BLASTX nr result

ID: Mentha29_contig00044435 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00044435
         (237 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEE01491.1| coat protein [Blueberry red ringspot virus]             52   4e-06
ref|NP_395468.1| putative coat protein [Blueberry red ringspot v...    52   4e-06
ref|YP_006607891.1| capsid protein [Soybean Putnam virus] gi|401...    55   8e-06

>gb|AEE01491.1| coat protein [Blueberry red ringspot virus]
          Length = 491

 Score = 52.4 bits (124), Expect(2) = 4e-06
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = -2

Query: 98  KKDCKCWLCEEIGHYANNCPNKKGKK 21
           KKDCKCW+C+E GHYAN CPNK  ++
Sbjct: 403 KKDCKCWICQEDGHYANECPNKDKRR 428



 Score = 23.9 bits (50), Expect(2) = 4e-06
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 129 RKNDKYCPKDKK 94
           + N KYCPK KK
Sbjct: 393 KSNQKYCPKGKK 404


>ref|NP_395468.1| putative coat protein [Blueberry red ringspot virus]
           gi|16033535|gb|AAL13273.1|AF404509_3 putative coat
           protein [Blueberry red ringspot virus]
          Length = 486

 Score = 52.4 bits (124), Expect(2) = 4e-06
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = -2

Query: 98  KKDCKCWLCEEIGHYANNCPNKKGKK 21
           KKDCKCW+C+E GHYAN CPNK  ++
Sbjct: 398 KKDCKCWICQEDGHYANECPNKDKRR 423



 Score = 23.9 bits (50), Expect(2) = 4e-06
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 129 RKNDKYCPKDKK 94
           + N KYCPK KK
Sbjct: 388 KSNQKYCPKGKK 399


>ref|YP_006607891.1| capsid protein [Soybean Putnam virus] gi|401620159|gb|AFP95349.1|
           capsid protein [Soybean Putnam virus]
          Length = 498

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = -2

Query: 98  KKDCKCWLCEEIGHYANNCPNKKGKKKEF 12
           KK+C+CW+C E GHYAN CPNK+  KK+F
Sbjct: 419 KKNCRCWICSEEGHYANECPNKENNKKQF 447


Top