BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00043789
         (294 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGF30149.1| RNA polymerase alpha subunit, partial (chloroplas...   118   1e-24
gb|AFV61844.1| RNA polymerase alpha subunit (chloroplast) [Origa...   117   2e-24
ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [...   115   5e-24
ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum ind...   115   5e-24
ref|YP_007507143.1| RNA polymerase alpha subunit (chloroplast) [...   114   1e-23
ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]...   114   2e-23
gb|ADD31211.1| RNA polymerase alpha subunit protein [Antirrhinum...   114   2e-23
ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [...   112   4e-23
ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [...   112   5e-23
gb|AGF30104.1| RNA polymerase alpha subunit, partial (chloroplas...   112   7e-23
gb|ADM92734.1| RNA polymerase alpha subunit protein [Davidia inv...   112   7e-23
gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sa...   112   7e-23
gb|ADD31225.1| RNA polymerase alpha subunit protein [Cornus flor...   112   7e-23
gb|AGF30103.1| RNA polymerase alpha subunit, partial (chloroplas...   111   9e-23
gb|AGF30148.1| RNA polymerase alpha subunit, partial (chloroplas...   111   1e-22
gb|AGF30147.1| RNA polymerase alpha subunit, partial (chloroplas...   111   1e-22
gb|AGF30123.1| RNA polymerase alpha subunit, partial (chloroplas...   111   1e-22
gb|AGF30122.1| RNA polymerase alpha subunit, partial (chloroplas...   111   1e-22
gb|AGF30119.1| RNA polymerase alpha subunit, partial (chloroplas...   111   1e-22
gb|AGF30111.1| RNA polymerase alpha subunit, partial (chloroplas...   111   1e-22

>gb|AGF30149.1| RNA polymerase alpha subunit, partial (chloroplast) [Glechoma
           hederacea]
          Length = 240

 Score =  118 bits (295), Expect = 1e-24
 Identities = 57/64 (89%), Positives = 60/64 (93%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKD+EN PLEDNQ 
Sbjct: 160 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDEENLPLEDNQH 219

Query: 180 KISI 191
            + +
Sbjct: 220 MVPL 223


>gb|AFV61844.1| RNA polymerase alpha subunit (chloroplast) [Origanum vulgare subsp.
           vulgare]
          Length = 335

 Score =  117 bits (293), Expect = 2e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGN KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN PLEDNQ 
Sbjct: 185 SIHSYGNGNAKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDENLPLEDNQH 244

Query: 180 KISI 191
            + +
Sbjct: 245 MVPL 248


>ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [Lindenbergia
           philippensis] gi|557136896|emb|CDI43950.1| RNA
           polymerase alpha subunit (chloroplast) [Lindenbergia
           philippensis]
          Length = 336

 Score =  115 bits (289), Expect = 5e-24
 Identities = 55/64 (85%), Positives = 61/64 (95%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL+K++EN PLEDNQ+
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQR 244

Query: 180 KISI 191
            + +
Sbjct: 245 TVPL 248


>ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum indicum]
           gi|347448327|gb|AEO92738.1| RNA polymerase alpha subunit
           (chloroplast) [Sesamum indicum]
           gi|496538633|gb|AGL45368.1| RpoA (chloroplast) [Sesamum
           indicum]
          Length = 337

 Score =  115 bits (289), Expect = 5e-24
 Identities = 55/64 (85%), Positives = 61/64 (95%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL+K++EN PLEDNQ+
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQR 244

Query: 180 KISI 191
            + +
Sbjct: 245 TVPL 248


>ref|YP_007507143.1| RNA polymerase alpha subunit (chloroplast) [Salvia miltiorrhiza]
           gi|401879773|gb|AFQ30960.1| RNA polymerase alpha subunit
           (chloroplast) [Salvia miltiorrhiza]
           gi|573461983|emb|CCQ71652.1| RNA polymerase alpha
           subunit (chloroplast) [Salvia miltiorrhiza]
          Length = 335

 Score =  114 bits (285), Expect = 1e-23
 Identities = 55/64 (85%), Positives = 59/64 (92%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASR LIDLFIPFLYKD+EN PLE NQ 
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRTLIDLFIPFLYKDEENLPLEHNQH 244

Query: 180 KISI 191
           ++ +
Sbjct: 245 RVPL 248


>ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]
           gi|558697182|gb|AHA84937.1| RNA polymerase subunit alpha
           [Ajuga reptans]
          Length = 337

 Score =  114 bits (284), Expect = 2e-23
 Identities = 55/59 (93%), Positives = 57/59 (96%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQ 176
           SIHSYGNGNEKQEILFLEIWTNGSL PKEALHEASRNLIDLFIPFLYK++EN PLEDNQ
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLNPKEALHEASRNLIDLFIPFLYKEEENLPLEDNQ 243


>gb|ADD31211.1| RNA polymerase alpha subunit protein [Antirrhinum majus]
          Length = 336

 Score =  114 bits (284), Expect = 2e-23
 Identities = 55/64 (85%), Positives = 60/64 (93%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL+K++EN PL+DNQ 
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLDDNQH 244

Query: 180 KISI 191
            I +
Sbjct: 245 TIPL 248


>ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [Olea europaea]
           gi|330850774|ref|YP_004376452.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334700313|ref|YP_004563812.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334701650|ref|YP_004564035.1| RNA polymerase alpha
           subunit [Olea woodiana subsp. woodiana]
           gi|334701919|ref|YP_004564528.1| RNA polymerase alpha
           subunit [Olea europaea subsp. maroccana]
           gi|281428718|gb|ADA69957.1| RNA polymerase alpha subunit
           (chloroplast) [Olea europaea]
           gi|291059284|gb|ADD72120.1| RNA polymerase alpha subunit
           [Olea europaea] gi|328795464|emb|CBR30346.1| RNA
           polymerase alpha subunit [Olea europaea subsp. europaea]
           gi|334084432|emb|CBR23861.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334084518|emb|CBR24655.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334084604|emb|CBR30439.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334084690|emb|CBS29383.1| RNA polymerase alpha
           subunit [Olea woodiana subsp. woodiana]
           gi|334084895|emb|CBS29273.1| RNA polymerase alpha
           subunit [Olea europaea subsp. maroccana]
           gi|334084981|emb|CBJ04329.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334085067|emb|CBR23770.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|510934435|emb|CCQ09133.1| RNA polymerase alpha
           subunit (chloroplast) [Olea europaea subsp. europaea]
          Length = 337

 Score =  112 bits (281), Expect = 4e-23
 Identities = 54/64 (84%), Positives = 59/64 (92%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFL+K++EN PLEDNQ 
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQH 244

Query: 180 KISI 191
            + +
Sbjct: 245 TVPL 248


>ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [Tectona grandis]
           gi|438687635|emb|CCP47162.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
           gi|438688319|emb|CCP47251.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
           gi|438688443|emb|CCP47340.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
          Length = 337

 Score =  112 bits (280), Expect = 5e-23
 Identities = 55/62 (88%), Positives = 58/62 (93%), Gaps = 1/62 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYK++EN  LEDNQ 
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLLLEDNQH 244

Query: 180 KI 185
            +
Sbjct: 245 TV 246


>gb|AGF30104.1| RNA polymerase alpha subunit, partial (chloroplast) [Lamium
           flexuosum]
          Length = 240

 Score =  112 bits (279), Expect = 7e-23
 Identities = 55/64 (85%), Positives = 59/64 (92%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYK+++N PLEDNQ 
Sbjct: 160 SIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEKNLPLEDNQY 219

Query: 180 KISI 191
            I +
Sbjct: 220 TIPL 223


>gb|ADM92734.1| RNA polymerase alpha subunit protein [Davidia involucrata]
          Length = 328

 Score =  112 bits (279), Expect = 7e-23
 Identities = 54/64 (84%), Positives = 60/64 (93%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL+ ++EN  LEDNQ 
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLEDNQH 244

Query: 180 KISI 191
           K+++
Sbjct: 245 KVTL 248


>gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sanguinea]
          Length = 337

 Score =  112 bits (279), Expect = 7e-23
 Identities = 54/64 (84%), Positives = 60/64 (93%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL+ ++EN  LEDNQ 
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEDNQH 244

Query: 180 KISI 191
           K+++
Sbjct: 245 KVTL 248


>gb|ADD31225.1| RNA polymerase alpha subunit protein [Cornus florida]
          Length = 337

 Score =  112 bits (279), Expect = 7e-23
 Identities = 54/64 (84%), Positives = 60/64 (93%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL+ ++EN  LEDNQ 
Sbjct: 185 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLEDNQH 244

Query: 180 KISI 191
           K+++
Sbjct: 245 KVTL 248


>gb|AGF30103.1| RNA polymerase alpha subunit, partial (chloroplast) [Lamium
           flexuosum]
          Length = 240

 Score =  111 bits (278), Expect = 9e-23
 Identities = 54/64 (84%), Positives = 59/64 (92%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQK 179
           SIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYK+++N PLEDNQ 
Sbjct: 160 SIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEKNLPLEDNQY 219

Query: 180 KISI 191
            + +
Sbjct: 220 TVPL 223


>gb|AGF30148.1| RNA polymerase alpha subunit, partial (chloroplast) [Lamium
           tomentosum]
          Length = 242

 Score =  111 bits (277), Expect = 1e-22
 Identities = 54/59 (91%), Positives = 57/59 (96%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQ 176
           SIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYK+++N PLEDNQ
Sbjct: 160 SIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEKNLPLEDNQ 218


>gb|AGF30147.1| RNA polymerase alpha subunit, partial (chloroplast) [Lamium
           tomentosum]
          Length = 242

 Score =  111 bits (277), Expect = 1e-22
 Identities = 54/59 (91%), Positives = 57/59 (96%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQ 176
           SIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYK+++N PLEDNQ
Sbjct: 160 SIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEKNLPLEDNQ 218


>gb|AGF30123.1| RNA polymerase alpha subunit, partial (chloroplast) [Lamium
           garganicum subsp. striatum]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22
 Identities = 54/59 (91%), Positives = 57/59 (96%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQ 176
           SIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYK+++N PLEDNQ
Sbjct: 160 SIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEKNLPLEDNQ 218


>gb|AGF30122.1| RNA polymerase alpha subunit, partial (chloroplast) [Lamium
           garganicum subsp. striatum] gi|451041575|gb|AGF30132.1|
           RNA polymerase alpha subunit, partial (chloroplast)
           [Lamium lycium] gi|550600524|gb|AGX85118.1| RpoA,
           partial (chloroplast) [Lamium garganicum subsp.
           laevigatum]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22
 Identities = 54/59 (91%), Positives = 57/59 (96%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQ 176
           SIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYK+++N PLEDNQ
Sbjct: 160 SIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEKNLPLEDNQ 218


>gb|AGF30119.1| RNA polymerase alpha subunit, partial (chloroplast) [Lamium
           garganicum subsp. garganicum]
           gi|451041551|gb|AGF30120.1| RNA polymerase alpha
           subunit, partial (chloroplast) [Lamium garganicum subsp.
           laevigatum] gi|451041553|gb|AGF30121.1| RNA polymerase
           alpha subunit, partial (chloroplast) [Lamium garganicum
           subsp. laevigatum]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22
 Identities = 54/59 (91%), Positives = 57/59 (96%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQ 176
           SIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYK+++N PLEDNQ
Sbjct: 160 SIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEKNLPLEDNQ 218


>gb|AGF30111.1| RNA polymerase alpha subunit, partial (chloroplast) [Lamium
           galeobdolon subsp. flavidum] gi|451041539|gb|AGF30114.1|
           RNA polymerase alpha subunit, partial (chloroplast)
           [Lamium galeobdolon subsp. montanum]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22
 Identities = 54/59 (91%), Positives = 57/59 (96%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKDDEN-PLEDNQ 176
           SIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYK+++N PLEDNQ
Sbjct: 160 SIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEKNLPLEDNQ 218