BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00038593
         (533 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFI44306.1| RNA polymerase (mitochondrion) [Silene vulgaris]       122   4e-26
ref|YP_003875488.1| RNA polymerase [Silene latifolia] gi|3013380...   121   9e-26
emb|CAA71809.1| RNA polymerase [Beta vulgaris subsp. maritima]        120   2e-25
ref|NP_064021.1| orf670 gene product (mitochondrion) [Beta vulga...    78   1e-12
emb|CBJ20686.1| hypothetical protein [Beta vulgaris subsp. marit...    78   1e-12
dbj|BAD66821.1| orf670 [Beta vulgaris subsp. vulgaris]                 78   1e-12
emb|CBL54156.1| hypothetical protein (mitochondrion) [Beta vulga...    69   5e-10
ref|YP_004222322.1| hypothetical protein BevumaM_p087 [Beta vulg...    55   8e-06

>gb|AFI44306.1| RNA polymerase (mitochondrion) [Silene vulgaris]
          Length = 1053

 Score =  122 bits (307), Expect = 4e-26
 Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 7/170 (4%)
 Frame = +3

Query: 45  ICHFWKMFFRDLMVKDEV----NTQVHTNDLVDNDTGIIKVSKSIFVKQYKDKVYKLLEE 212
           I  FW  +F +L+ KD V    + +  T ++VD D+  IKV K+++V++YK++V+K+LE+
Sbjct: 37  IDEFWVTYFNELLTKDNVVIYKDLECPTKEIVDLDSRTIKVPKALYVREYKNRVFKILED 96

Query: 213 NRKIFPSLGKNEKV---ELQREIETLTTSFSEENIYASCPNIISMMVKNDSLPNAKEFLL 383
           N+      G+ + +   ELQ EIE LT SF+EEN+Y  CPNI+SM+ K +  PNAKEFL 
Sbjct: 97  NK------GEKDPIKLKELQVEIEYLTMSFNEENMYKECPNIMSMLTKTNK-PNAKEFLR 149

Query: 384 HKYKVDRVGDRMTILRSEDEDRLSIEEKKTVHSLLSAEDKDLLSVFGQYT 533
            KYK+D +G RM I+  + E  L   E+K   +LL + D D+L   G +T
Sbjct: 150 GKYKLDDLG-RMQIINKDKE--LEEGEQKKYVNLLDSNDLDILKELGDHT 196


>ref|YP_003875488.1| RNA polymerase [Silene latifolia] gi|301338044|gb|ADK73336.1| RNA
           polymerase [Silene latifolia]
          Length = 261

 Score =  121 bits (304), Expect = 9e-26
 Identities = 72/170 (42%), Positives = 107/170 (62%), Gaps = 7/170 (4%)
 Frame = +3

Query: 45  ICHFWKMFFRDLMVKDEVNTQVHT----NDLVDNDTGIIKVSKSIFVKQYKDKVYKLLEE 212
           I  FW  +F +L+ K+E           N++VD D+  IKV K+++V++YK++VYK+LEE
Sbjct: 54  IDEFWVSYFIELLEKEEYKIYKEKGSLKNEIVDLDSRTIKVPKALYVREYKNRVYKILEE 113

Query: 213 NRKIFPSLGKNEKV---ELQREIETLTTSFSEENIYASCPNIISMMVKNDSLPNAKEFLL 383
           N+      G+ + +   ELQ +IE LT +F+EEN+Y  CPNI+SM+ K    PNAKEFL 
Sbjct: 114 NK------GEKDPLKLKELQIQIEELTMTFNEENLYKECPNIMSMLTKTKK-PNAKEFLR 166

Query: 384 HKYKVDRVGDRMTILRSEDEDRLSIEEKKTVHSLLSAEDKDLLSVFGQYT 533
            KYK+D +G RM I+  ++   LS  EKK   ++L + D D+L  FG +T
Sbjct: 167 GKYKLDDLG-RMQII--DNHKSLSEGEKKKYENILDSNDLDILKEFGDHT 213


>emb|CAA71809.1| RNA polymerase [Beta vulgaris subsp. maritima]
          Length = 1014

 Score =  120 bits (301), Expect = 2e-25
 Identities = 80/183 (43%), Positives = 107/183 (58%), Gaps = 8/183 (4%)
 Frame = +3

Query: 9   EFNNKISDSEMTICHFWKMFFRDLMVK---DEVNTQVHTN--DLVDNDTGIIKVSKSIFV 173
           +F    +     I  FW      + ++   DE     H +  DLVD DT  IKV K+IFV
Sbjct: 39  DFGESQTSKRKIIESFWIEVLDKIKIQVFEDERKNSCHGSKFDLVDLDTRTIKVPKAIFV 98

Query: 174 KQYKDKVYKLLEENRKIFPSLGKNEK---VELQREIETLTTSFSEENIYASCPNIISMMV 344
           K YK+ VY LLEE+R      GK  K    +LQ+EIE LT +FSEE+I+ +CPNI+ M+ 
Sbjct: 99  KDYKNHVYSLLEEHR------GKTNKEVLEKLQKEIEELTLNFSEESIFKTCPNIMLMIT 152

Query: 345 KNDSLPNAKEFLLHKYKVDRVGDRMTILRSEDEDRLSIEEKKTVHSLLSAEDKDLLSVFG 524
           K D LPNAKEFL  +Y  D+VG R+ IL  +  +  S+EE   +H +LS  DK LL  FG
Sbjct: 153 KTD-LPNAKEFLRGEYYTDKVG-RIRILEQKKREGSSVEE---LHPVLSEYDKGLLKEFG 207

Query: 525 QYT 533
           ++T
Sbjct: 208 EHT 210


>ref|NP_064021.1| orf670 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|9838496|ref|NP_064108.1| orf670 gene product
           (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|323435078|ref|YP_004222296.1| hypothetical protein
           BevumaM_p058 [Beta vulgaris subsp. maritima]
           gi|323435132|ref|YP_004222350.1| hypothetical protein
           BevumaM_p117 [Beta vulgaris subsp. maritima]
           gi|346683169|ref|YP_004842101.1| hypothetical protein
           BemaM_p054 [Beta macrocarpa]
           gi|346683223|ref|YP_004842155.1| hypothetical protein
           BemaM_p111 [Beta macrocarpa] gi|9049322|dbj|BAA99332.1|
           orf670 [Beta vulgaris subsp. vulgaris]
           gi|9087358|dbj|BAA99502.1| orf670 [Beta vulgaris subsp.
           vulgaris] gi|317905583|emb|CBJ13995.1| hypothetical
           protein [Beta vulgaris subsp. maritima]
           gi|317905631|emb|CBJ14031.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|319439811|emb|CBJ17522.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|319439865|emb|CBJ17570.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|345500087|emb|CBX24903.1|
           hypothetical protein [Beta macrocarpa]
           gi|345500141|emb|CBX24960.1| hypothetical protein [Beta
           macrocarpa] gi|384977890|emb|CBL54112.1| hypothetical
           protein (mitochondrion) [Beta vulgaris subsp. maritima]
          Length = 670

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 13/186 (6%)
 Frame = +3

Query: 15  NNKISDSEMTICHFWKMFFRDLMVKDEVNTQVHTNDLVDNDTGIIKVSK----------- 161
           +N   ++   +  FW   FR+L++  E   +V   D   ++    +VS+           
Sbjct: 24  HNFSDENRELLIRFWNRVFRELLLVKEATDKVEFYDSDSDEVSADEVSRINRALTQIEFF 83

Query: 162 SIFVKQYKDKVYKLLEENRKIFPSLGKNEKVELQREIETLTTSFSEENIYASCPNIISMM 341
                +YK+KV++ L + +K    +  ++ + LQ EIE LT ++ EE+IY   P ++ + 
Sbjct: 84  QTVKDEYKEKVFQKLVDAKK--EKMDYSQLMALQNEIENLTMTYYEESIYHCQPALMRLF 141

Query: 342 VKNDSLPNAKEFLLHKYKVDR-VGDRMTILRSEDEDR-LSIEEKKTVHSLLSAEDKDLLS 515
           + +D LP AK+FL  ++KVD+  GD  + ++     +  S E  K    LL++E+K++LS
Sbjct: 142 INSD-LPCAKDFLKGQFKVDKNSGDTSSRIKIIPHSKGNSSENSKDYMDLLTSEEKNMLS 200

Query: 516 VFGQYT 533
            FG YT
Sbjct: 201 FFGPYT 206


>emb|CBJ20686.1| hypothetical protein [Beta vulgaris subsp. maritima]
          Length = 670

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 13/186 (6%)
 Frame = +3

Query: 15  NNKISDSEMTICHFWKMFFRDLMVKDEVNTQVHTNDLVDNDTGIIKVSK----------- 161
           +N   ++   +  FW   FR+L++  E   +V   D   ++    +VS+           
Sbjct: 24  HNFSDENRELLIRFWNRVFRELLLVKEATDKVEFYDSDSDEVSADEVSRINRALTQIEFF 83

Query: 162 SIFVKQYKDKVYKLLEENRKIFPSLGKNEKVELQREIETLTTSFSEENIYASCPNIISMM 341
                +YK+KV++ L + +K    +  ++ + LQ EIE LT ++ EE+IY   P ++ + 
Sbjct: 84  QTVKDEYKEKVFQKLVDAKK--EKMDYSQLMALQNEIENLTMTYYEESIYHCQPALMRLF 141

Query: 342 VKNDSLPNAKEFLLHKYKVDR-VGDRMTILRSEDEDR-LSIEEKKTVHSLLSAEDKDLLS 515
           + +D LP AK+FL  ++KVD+  GD  + ++     +  S E  K    LL++E+K++LS
Sbjct: 142 INSD-LPCAKDFLKGQFKVDKNSGDTSSRIKIIPHSKGNSSENSKDYMDLLTSEEKNMLS 200

Query: 516 VFGQYT 533
            FG YT
Sbjct: 201 FFGPYT 206


>dbj|BAD66821.1| orf670 [Beta vulgaris subsp. vulgaris]
          Length = 670

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 13/186 (6%)
 Frame = +3

Query: 15  NNKISDSEMTICHFWKMFFRDLMVKDEVNTQVHTNDLVDNDTGIIKVSK----------- 161
           +N   ++   +  FW   FR+L++  E   +V   D   ++    +VS+           
Sbjct: 24  HNFSDENRELLIRFWNRVFRELLLVKEATDKVEFYDSDSDEVSADEVSRINRALTQIEFF 83

Query: 162 SIFVKQYKDKVYKLLEENRKIFPSLGKNEKVELQREIETLTTSFSEENIYASCPNIISMM 341
                +YK+KV++ L + +K    +  ++ + LQ EIE LT ++ EE+IY   P ++ + 
Sbjct: 84  QTVKDEYKEKVFQKLVDAKK--EKMDYSQLMALQNEIENLTMTYYEESIYHCQPALMRLF 141

Query: 342 VKNDSLPNAKEFLLHKYKVDR-VGDRMTILRSEDEDR-LSIEEKKTVHSLLSAEDKDLLS 515
           + +D LP AK+FL  ++KVD+  GD  + ++     +  S E  K    LL++E+K++LS
Sbjct: 142 INSD-LPCAKDFLKGQFKVDKNSGDTSSRIKIIPHSKGNSSENSKDYMDLLTSEEKNMLS 200

Query: 516 VFGQYT 533
            FG YT
Sbjct: 201 FFGPYT 206


>emb|CBL54156.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
           maritima]
          Length = 203

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 13/180 (7%)
 Frame = +3

Query: 15  NNKISDSEMTICHFWKMFFRDLMVKDEVNTQVHTNDLVDNDTGIIKVSK----------- 161
           +N   ++   +  FW   FR+L++  E   +V   D   ++    +VS+           
Sbjct: 24  HNFSDENRELLIRFWNRVFRELLLVKEATDKVEFYDSDSDEVSADEVSRINRALTQIEFF 83

Query: 162 SIFVKQYKDKVYKLLEENRKIFPSLGKNEKVELQREIETLTTSFSEENIYASCPNIISMM 341
                +YK+KV++ L + +K    +  ++ + LQ EIE LT ++ EE+IY   P ++ + 
Sbjct: 84  QTVKDEYKEKVFQKLVDAKK--EKMDYSQLMALQNEIENLTMTYYEESIYHCQPALMRLF 141

Query: 342 VKNDSLPNAKEFLLHKYKVDR-VGDRMTILRSEDEDR-LSIEEKKTVHSLLSAEDKDLLS 515
           + +D LP AK+FL  ++KVD+  GD  + ++     +  S E  K    LL++E+K++LS
Sbjct: 142 INSD-LPCAKDFLKGQFKVDKNSGDTSSRIKIIPHSKGNSSENSKDYMDLLTSEEKNMLS 200


>ref|YP_004222322.1| hypothetical protein BevumaM_p087 [Beta vulgaris subsp. maritima]
           gi|346683196|ref|YP_004842128.1| hypothetical protein
           BemaM_p083 [Beta macrocarpa]
           gi|317905658|emb|CBJ14054.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|319439837|emb|CBJ17545.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|320148085|emb|CBJ20747.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|345500114|emb|CBX24932.1|
           hypothetical protein [Beta macrocarpa]
          Length = 224

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
 Frame = +3

Query: 258 LQREIETLTTSFSEENIYASCPNIISMMVKNDSLPNAKEFLLHKYKVDRVGDRMTILRSE 437
           LQ ++E LT  ++EE I+A  P+++   +K+D LPNA+++L  KYK+D+V D +  ++  
Sbjct: 18  LQAKVEDLTMKYNEECIFAGNPSLLERFIKSD-LPNARDYLKGKYKLDKVDDNLDRIKVL 76

Query: 438 DEDR-LSIEEKKTVHSLLSAEDKDLLSVFG 524
             D+            LL+  DK+L++ +G
Sbjct: 77  PYDKGQRTPPADGYKDLLNEADKELINSYG 106