BLASTX nr result
ID: Mentha29_contig00016009
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha29_contig00016009
(428 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus... 209 3e-52
gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlise... 199 4e-49
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 178 8e-43
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope... 174 1e-41
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 172 6e-41
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 170 2e-40
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 170 2e-40
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 169 5e-40
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 169 5e-40
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin... 168 6e-40
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 168 8e-40
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 165 5e-39
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put... 164 2e-38
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put... 164 2e-38
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 163 3e-38
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 163 3e-38
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 162 6e-38
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 161 8e-38
ref|XP_002299208.2| DNA-directed RNA polymerase alpha subunit fa... 159 4e-37
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 150 2e-34
>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
Length = 2113
Score = 209 bits (532), Expect = 3e-52
Identities = 108/142 (76%), Positives = 117/142 (82%)
Frame = +3
Query: 3 ALQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSE 182
ALQ+D YLR+VKIPV F++ SSA+G LIDSKSESALSKVVQQIGFLGIQ+SDKGKFY+E
Sbjct: 657 ALQIDNYLRNVKIPVTNFVK-SSAVGRLIDSKSESALSKVVQQIGFLGIQLSDKGKFYTE 715
Query: 183 TLVKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
TLV+DMSSLFQ KYPS D P EEF LV RPLFRGLNPYQEMVH GLT
Sbjct: 716 TLVQDMSSLFQKKYPSCDGYPAEEFSLVSRPLFRGLNPYQEMVHSIASREVIVRSTRGLT 775
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVIC+DG
Sbjct: 776 EPGTLFKNLMAILRDVVICHDG 797
>gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlisea aurea]
Length = 1379
Score = 199 bits (505), Expect = 4e-49
Identities = 102/142 (71%), Positives = 113/142 (79%)
Frame = +3
Query: 3 ALQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSE 182
ALQL++YL SVK PV +FI +SSAIG L DS+SES LSKVVQQIGF G Q+S KGKFY+E
Sbjct: 656 ALQLESYLSSVKTPVTEFIVNSSAIGFLTDSRSESGLSKVVQQIGFCGTQLSSKGKFYTE 715
Query: 183 TLVKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
LVKD+SSLF+ KYPS DD P E+FGLV +PLFRGLNPYQEMVH GLT
Sbjct: 716 RLVKDLSSLFRSKYPSSDDCPTEDFGLVCQPLFRGLNPYQEMVHSISSREVIVRSSRGLT 775
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 776 EPGTLFKNLMAILRDVVICYDG 797
>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1 [Solanum lycopersicum]
Length = 1632
Score = 178 bits (451), Expect = 8e-43
Identities = 91/141 (64%), Positives = 107/141 (75%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
+QL+ +LR+ K+PV F+ SS +G LIDSKSESA +KVVQQIGFLG+QISD+GKFY++T
Sbjct: 659 VQLEHHLRNEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYTKT 718
Query: 186 LVKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLTE 365
LV DM+ LFQ KYPS +P EEFGLV LF GL+PYQ M+H GLTE
Sbjct: 719 LVHDMAQLFQKKYPSVGTNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTE 778
Query: 366 PGTLFKNLMAILRDVVICYDG 428
PGTLFKNLMAILRDVVICYDG
Sbjct: 779 PGTLFKNLMAILRDVVICYDG 799
>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1127
Score = 174 bits (441), Expect = 1e-41
Identities = 90/141 (63%), Positives = 104/141 (73%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
+QL+ +LR+ K+PV F+ SS +G LIDSKSESA +KVVQQIGFLG+QISD+GKFY T
Sbjct: 210 VQLEHHLRNEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYXXT 269
Query: 186 LVKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLTE 365
LV DM+ LFQ KYPS +P EEFGLV LF GL+PYQ M+H GLTE
Sbjct: 270 LVHDMAQLFQKKYPSVGTNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTE 329
Query: 366 PGTLFKNLMAILRDVVICYDG 428
PGTLF NLMAILRDVVICYDG
Sbjct: 330 PGTLFXNLMAILRDVVICYDG 350
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 172 bits (435), Expect = 6e-41
Identities = 86/140 (61%), Positives = 107/140 (76%)
Frame = +3
Query: 9 QLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETL 188
QL +RSVK+PV+ FI +SSA+G LIDSKS+SA++K+VQQIGFLG+Q+SDKG+FYS+TL
Sbjct: 662 QLQNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTL 721
Query: 189 VKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLTEP 368
V+D++SL KYPS D P E+GLV F GL+PY+ +VH GL+EP
Sbjct: 722 VEDVASLCHSKYPSDIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEP 781
Query: 369 GTLFKNLMAILRDVVICYDG 428
GTLFKNLMAILRDVVICYDG
Sbjct: 782 GTLFKNLMAILRDVVICYDG 801
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 170 bits (431), Expect = 2e-40
Identities = 88/142 (61%), Positives = 107/142 (75%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQ + +LR K+PVA FI +SSA+G+LIDSKS+SA++KVVQQIGFLG Q+S+KGKFYS T
Sbjct: 718 LQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRT 777
Query: 186 LVKDMSSLFQMKYPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
LV+ M+ LF+ KYP + D P EFGL+ F GL+PY+EMVH GL+
Sbjct: 778 LVEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLS 837
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 838 EPGTLFKNLMAILRDVVICYDG 859
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 170 bits (431), Expect = 2e-40
Identities = 88/142 (61%), Positives = 107/142 (75%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQ + +LR K+PVA FI +SSA+G+LIDSKS+SA++KVVQQIGFLG Q+S+KGKFYS T
Sbjct: 658 LQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRT 717
Query: 186 LVKDMSSLFQMKYPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
LV+ M+ LF+ KYP + D P EFGL+ F GL+PY+EMVH GL+
Sbjct: 718 LVEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLS 777
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 778 EPGTLFKNLMAILRDVVICYDG 799
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 169 bits (427), Expect = 5e-40
Identities = 87/142 (61%), Positives = 106/142 (74%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQL+ +LRSVK+P FI S++G L DSKSESA++KVVQQIGFLG+Q+SDKG+FYS++
Sbjct: 658 LQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKS 717
Query: 186 LVKDMSSLFQMKYPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
L++D++SLF +Y S D P EFGLV F GL+PY+EMVH GLT
Sbjct: 718 LIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLT 777
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 778 EPGTLFKNLMAILRDVVICYDG 799
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 169 bits (427), Expect = 5e-40
Identities = 87/142 (61%), Positives = 106/142 (74%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQL+ +LRSVK+P FI S++G L DSKSESA++KVVQQIGFLG+Q+SDKG+FYS++
Sbjct: 688 LQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKS 747
Query: 186 LVKDMSSLFQMKYPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
L++D++SLF +Y S D P EFGLV F GL+PY+EMVH GLT
Sbjct: 748 LIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLT 807
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 808 EPGTLFKNLMAILRDVVICYDG 829
>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 991
Score = 168 bits (426), Expect = 6e-40
Identities = 86/142 (60%), Positives = 106/142 (74%)
Frame = +3
Query: 3 ALQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSE 182
ALQL+ ++R K+PVA FI S+IG LID KS+SA++KVVQQIGFLG+QISD+GKFY++
Sbjct: 660 ALQLENHIRRAKLPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTK 719
Query: 183 TLVKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
TLV+DM+ F+ KYPS D P + GL+ F GL+PY+EMVH GL+
Sbjct: 720 TLVEDMALHFESKYPSDIDYPSAKHGLIQSCFFHGLDPYEEMVHSISAREVMVRSTRGLS 779
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 780 EPGTLFKNLMAILRDVVICYDG 801
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 168 bits (425), Expect = 8e-40
Identities = 85/141 (60%), Positives = 103/141 (73%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQL+ +R K PV FI SS++G+LID KS+SA++KVVQQIGFLG+QISD+GKFYS+T
Sbjct: 662 LQLENQIRFAKAPVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRGKFYSKT 721
Query: 186 LVKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLTE 365
LV+D+S L+ KYP D P E GL+ F GL+PY+E+VH GLTE
Sbjct: 722 LVEDVSCLYTRKYPENVDYPSAEHGLIRSCFFHGLDPYEEIVHSISTREVIVRSSRGLTE 781
Query: 366 PGTLFKNLMAILRDVVICYDG 428
PGTLFKNLMAILRDVVICYDG
Sbjct: 782 PGTLFKNLMAILRDVVICYDG 802
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 165 bits (418), Expect = 5e-39
Identities = 81/141 (57%), Positives = 101/141 (71%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
+Q + ++R K PV FI SSA+G +IDS+S+SA+ K+VQQIGFLG+Q+SD+ KFYS
Sbjct: 459 VQFENHIREFKSPVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYSRG 518
Query: 186 LVKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLTE 365
LV+D++SLF KYP D P EEFG V R F GL+PY+E+VH GL E
Sbjct: 519 LVEDVASLFHQKYPFADVYPSEEFGFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGLAE 578
Query: 366 PGTLFKNLMAILRDVVICYDG 428
PGTLFKNLMA+LRDVVICYDG
Sbjct: 579 PGTLFKNLMAVLRDVVICYDG 599
>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
[Theobroma cacao] gi|508727914|gb|EOY19811.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
3 [Theobroma cacao]
Length = 1675
Score = 164 bits (414), Expect = 2e-38
Identities = 85/142 (59%), Positives = 105/142 (73%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQ++ ++R K PVA FI +SSA+G LIDSKS+S ++KVVQQIGFLG+Q+S+KGKFYS+T
Sbjct: 659 LQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKT 718
Query: 186 LVKDMSSLFQMKYPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
LV+D++ FQ YPS D P EFGL+ F GL+PY+ MVH GL+
Sbjct: 719 LVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLS 778
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 779 EPGTLFKNLMAILRDVVICYDG 800
>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|590569189|ref|XP_007011000.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 164 bits (414), Expect = 2e-38
Identities = 85/142 (59%), Positives = 105/142 (73%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQ++ ++R K PVA FI +SSA+G LIDSKS+S ++KVVQQIGFLG+Q+S+KGKFYS+T
Sbjct: 659 LQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKT 718
Query: 186 LVKDMSSLFQMKYPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
LV+D++ FQ YPS D P EFGL+ F GL+PY+ MVH GL+
Sbjct: 719 LVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLS 778
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 779 EPGTLFKNLMAILRDVVICYDG 800
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 163 bits (412), Expect = 3e-38
Identities = 81/141 (57%), Positives = 106/141 (75%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQ++ ++R VK+ VAKFI SS +G+LIDSKS+SA+SKVVQQ GFLG+Q+SD+GKFYS+T
Sbjct: 659 LQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 718
Query: 186 LVKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLTE 365
LV+D++S F+ YP + P ++GL+ F GL+PY+EM H GL+E
Sbjct: 719 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 778
Query: 366 PGTLFKNLMAILRDVVICYDG 428
PGTLFKNLMA+LRDVVICYDG
Sbjct: 779 PGTLFKNLMAVLRDVVICYDG 799
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 163 bits (412), Expect = 3e-38
Identities = 81/141 (57%), Positives = 106/141 (75%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQ++ ++R VK+ VAKFI SS +G+LIDSKS+SA+SKVVQQ GFLG+Q+SD+GKFYS+T
Sbjct: 660 LQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 719
Query: 186 LVKDMSSLFQMKYPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLTE 365
LV+D++S F+ YP + P ++GL+ F GL+PY+EM H GL+E
Sbjct: 720 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 779
Query: 366 PGTLFKNLMAILRDVVICYDG 428
PGTLFKNLMA+LRDVVICYDG
Sbjct: 780 PGTLFKNLMAVLRDVVICYDG 800
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 162 bits (409), Expect = 6e-38
Identities = 84/142 (59%), Positives = 105/142 (73%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
+QL+ ++R VK PV+ FI +SSA+G LIDSKS+SA++KVVQQ+GFLG Q+ D+GK YS+T
Sbjct: 657 MQLENHIRKVKEPVSNFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYDQGKLYSKT 716
Query: 186 LVKDMSSLFQMKYPS-YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
LV+D+SSL+Q KYPS D P EFGLV R GL+P + M+H GL+
Sbjct: 717 LVEDVSSLYQNKYPSDIVDYPSAEFGLVHRGFVHGLDPVEGMIHSIATREVIVRSSRGLS 776
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMA LRDVVICYDG
Sbjct: 777 EPGTLFKNLMATLRDVVICYDG 798
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 161 bits (408), Expect = 8e-38
Identities = 81/142 (57%), Positives = 106/142 (74%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQ++ ++R VK PV +FI SSA+G+LIDSKS++A++KVVQQIGFLG+Q+SD+GK YS+T
Sbjct: 664 LQVENHIRDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKT 723
Query: 186 LVKDMSSLFQMKYP-SYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
LV+D++S F KYP + D P ++GL+ F GL+ Y+EM H GL+
Sbjct: 724 LVEDLASHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLS 783
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 784 EPGTLFKNLMAILRDVVICYDG 805
>ref|XP_002299208.2| DNA-directed RNA polymerase alpha subunit family protein [Populus
trichocarpa] gi|550346661|gb|EEE84013.2| DNA-directed RNA
polymerase alpha subunit family protein [Populus
trichocarpa]
Length = 842
Score = 159 bits (402), Expect = 4e-37
Identities = 79/142 (55%), Positives = 106/142 (74%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 LQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSET 185
LQ++ +++ VK PV +FI SSA+G+LIDSKS+ A++K+VQQIGFLG+Q+SD+GK YS+T
Sbjct: 578 LQVENHIQDVKTPVLEFILTSSALGYLIDSKSDGAVAKLVQQIGFLGLQVSDRGKLYSKT 637
Query: 186 LVKDMSSLFQMKYP-SYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGLT 362
LV+D++S FQ KYP + + P ++GL+ F GL+ Y+EM H GL+
Sbjct: 638 LVEDLASHFQSKYPTNLLNYPSAQYGLIQSSFFHGLDAYEEMAHSISTREVIVRSSRGLS 697
Query: 363 EPGTLFKNLMAILRDVVICYDG 428
EPGTLFKNLMAILRDVVICYDG
Sbjct: 698 EPGTLFKNLMAILRDVVICYDG 719
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 150 bits (378), Expect = 2e-34
Identities = 77/143 (53%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 ALQLDTYLRSVKIPVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSE 182
A QL+ ++ +++PV F S+ +G LIDSKS+SA+ KV+QQIGFLG Q+ ++GKFYS+
Sbjct: 743 AQQLEKVIQDIELPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSK 802
Query: 183 TLVKDMSSLFQMK-YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXXGL 359
LV+D++S FQ+K + DD P EFGL+ F GL+PY+E+VH GL
Sbjct: 803 GLVEDVASHFQLKCFYDKDDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGL 862
Query: 360 TEPGTLFKNLMAILRDVVICYDG 428
+EPGTLFKNLMAILRDVVICYDG
Sbjct: 863 SEPGTLFKNLMAILRDVVICYDG 885