BLASTX nr result
ID: Mentha29_contig00015603
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha29_contig00015603
(486 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU36603.1| hypothetical protein MIMGU_mgv1a027010mg [Mimulus... 298 4e-79
gb|EPS71674.1| hypothetical protein M569_03083, partial [Genlise... 298 7e-79
ref|XP_007050431.1| Zinc finger C-x8-C-x5-C-x3-H type family pro... 286 2e-75
ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, pu... 280 1e-73
ref|XP_004300085.1| PREDICTED: splicing factor U2af small subuni... 279 3e-73
ref|XP_004145565.1| PREDICTED: splicing factor U2af small subuni... 279 3e-73
gb|EXB56251.1| Splicing factor U2af small subunit A [Morus notab... 276 2e-72
ref|XP_002276502.1| PREDICTED: splicing factor U2af small subuni... 275 6e-72
ref|XP_006415744.1| hypothetical protein EUTSA_v10008280mg [Eutr... 274 8e-72
dbj|BAJ34257.1| unnamed protein product [Thellungiella halophila] 274 8e-72
ref|XP_002307825.1| U2 snRNP auxiliary factor small subunit fami... 273 1e-71
ref|XP_006305464.1| hypothetical protein CARUB_v10009885mg [Caps... 272 4e-71
ref|XP_002863733.1| hypothetical protein ARALYDRAFT_494737 [Arab... 271 5e-71
ref|NP_199096.1| Splicing factor U2af small subunit B [Arabidops... 271 5e-71
ref|XP_002300614.1| hypothetical protein POPTR_0002s00480g [Popu... 271 7e-71
ref|XP_006403342.1| hypothetical protein EUTSA_v10003254mg [Eutr... 270 1e-70
ref|XP_002890741.1| hypothetical protein ARALYDRAFT_472969 [Arab... 270 1e-70
ref|NP_174086.1| splicing factor U2af small subunit A [Arabidops... 270 2e-70
ref|XP_002440251.1| hypothetical protein SORBIDRAFT_09g028530 [S... 270 2e-70
ref|NP_001150605.1| splicing factor U2af 38 kDa subunit [Zea may... 270 2e-70
>gb|EYU36603.1| hypothetical protein MIMGU_mgv1a027010mg [Mimulus guttatus]
Length = 304
Score = 298 bits (764), Expect = 4e-79
Identities = 140/162 (86%), Positives = 153/162 (94%), Gaps = 1/162 (0%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQPIDPDKIQEHFEDF+EDI+EEL KFGEIESLNVCDNLADHMIGNVY Q
Sbjct: 56 DMITPGVDAQGQPIDPDKIQEHFEDFFEDIFEELRKFGEIESLNVCDNLADHMIGNVYAQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEED+AAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM
Sbjct: 116 FKEEDEAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 175
Query: 124 IGRELRRKLYGTRH-AKFWGTRSRSRSASPPYHKREREREKE 2
IG+ELRRKL+G + K+WGTRSRSRSASP +H + R++E++
Sbjct: 176 IGKELRRKLFGKHNTGKYWGTRSRSRSASPSHHHQRRDKERD 217
>gb|EPS71674.1| hypothetical protein M569_03083, partial [Genlisea aurea]
Length = 278
Score = 298 bits (762), Expect = 7e-79
Identities = 140/162 (86%), Positives = 155/162 (95%), Gaps = 1/162 (0%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQPI+ KIQEHFEDF+EDI+EELSKFGEIESLNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPIEARKIQEHFEDFFEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAALNAL+GRFYSGRPIIADFSPVTDFREATCRQYEE+SCNRGGYCNFMHVKM
Sbjct: 116 FKEEDQAAAALNALRGRFYSGRPIIADFSPVTDFREATCRQYEEDSCNRGGYCNFMHVKM 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASPP-YHKREREREKE 2
IGR+LR+KL+G R +FWG RSRSRSASPP +H+RER++E++
Sbjct: 176 IGRDLRKKLFGRRQIRFWGRRSRSRSASPPHFHRRERDKERD 217
>ref|XP_007050431.1| Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1
[Theobroma cacao] gi|590716560|ref|XP_007050432.1| Zinc
finger C-x8-C-x5-C-x3-H type family protein isoform 1
[Theobroma cacao] gi|508702692|gb|EOX94588.1| Zinc
finger C-x8-C-x5-C-x3-H type family protein isoform 1
[Theobroma cacao] gi|508702693|gb|EOX94589.1| Zinc
finger C-x8-C-x5-C-x3-H type family protein isoform 1
[Theobroma cacao]
Length = 279
Score = 286 bits (732), Expect = 2e-75
Identities = 139/165 (84%), Positives = 154/165 (93%), Gaps = 4/165 (2%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQPIDP KIQEHFEDFYEDI+EELSKFGEIESLNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPIDPHKIQEHFEDFYEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
F+EEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK+
Sbjct: 116 FREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKV 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASPPYHK----REREREKE 2
IGRELRRKL+G R+ KF G+RSRSRSASP + + R+R+R+++
Sbjct: 176 IGRELRRKLFG-RYRKFRGSRSRSRSASPRHRRDKEFRDRDRDRD 219
>ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis] gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary
factor, small subunit, putative [Ricinus communis]
Length = 272
Score = 280 bits (716), Expect = 1e-73
Identities = 133/160 (83%), Positives = 147/160 (91%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQPIDP KIQEHFEDFYEDI+EEL KFGEIESLNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
F+EEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK+
Sbjct: 116 FREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASPPYHKREREREK 5
IGR+LRRKL+G R+ + +RSRSRS SP H+RE+ ++
Sbjct: 176 IGRDLRRKLFG-RYRGYRASRSRSRSVSPSRHRREKSNDR 214
>ref|XP_004300085.1| PREDICTED: splicing factor U2af small subunit B-like [Fragaria
vesca subsp. vesca]
Length = 280
Score = 279 bits (714), Expect = 3e-73
Identities = 136/163 (83%), Positives = 149/163 (91%), Gaps = 2/163 (1%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGEIESLNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDPQGQPLDPRKIQDHFEDFYEDIFEELDKFGEIESLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAAL ALQGRFY+GRPIIADFSPVTDFREATCRQ+EENSCNRGGYCNFMHVK+
Sbjct: 116 FKEEDQAAAALQALQGRFYNGRPIIADFSPVTDFREATCRQFEENSCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGT-RHAKFWGTRSRSRSASPPYHKRERE-REKE 2
IGRELRRKLYG R + +RSRSRS SPP H+R+R+ RE++
Sbjct: 176 IGRELRRKLYGRYRGFRASRSRSRSRSLSPPRHRRDRDYRERD 218
>ref|XP_004145565.1| PREDICTED: splicing factor U2af small subunit B-like [Cucumis
sativus] gi|449485076|ref|XP_004157064.1| PREDICTED:
splicing factor U2af small subunit B-like [Cucumis
sativus]
Length = 276
Score = 279 bits (713), Expect = 3e-73
Identities = 135/161 (83%), Positives = 145/161 (90%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQPIDP KIQEHFEDFYEDIYEEL KFGEIESLNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
F+EEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVKM
Sbjct: 116 FREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKM 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASPPYHKREREREKE 2
IG++LRRKL+G R+ + +RSRSRS SP K RE++
Sbjct: 176 IGKDLRRKLFG-RYRGYRASRSRSRSLSPRNRKEHDRRERD 215
>gb|EXB56251.1| Splicing factor U2af small subunit A [Morus notabilis]
Length = 348
Score = 276 bits (706), Expect = 2e-72
Identities = 133/161 (82%), Positives = 148/161 (91%), Gaps = 1/161 (0%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQPIDP KIQEHFEDFYEDI+EEL KFGEIESLNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPIDPHKIQEHFEDFYEDIFEELCKFGEIESLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEED AAAAL ALQGRFY+GRPIIADFSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK+
Sbjct: 116 FKEEDHAAAALQALQGRFYNGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASPP-YHKREREREK 5
IGR+LRRKL+G R+ + +RSRSRS SPP +H+R+ +R +
Sbjct: 176 IGRDLRRKLFG-RYRGYRVSRSRSRSLSPPRHHRRDNDRRE 215
>ref|XP_002276502.1| PREDICTED: splicing factor U2af small subunit B isoform 1 [Vitis
vinifera] gi|359491881|ref|XP_003634337.1| PREDICTED:
splicing factor U2af small subunit B isoform 2 [Vitis
vinifera]
Length = 272
Score = 275 bits (702), Expect = 6e-72
Identities = 133/160 (83%), Positives = 148/160 (92%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQPIDP KIQEHFEDFYEDI+EEL KFGEIESLNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEE+QAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK+
Sbjct: 116 FKEEEQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASPPYHKREREREK 5
IGR+LRRKL+G R++ + +RSRSRS SP Y +R+ +R +
Sbjct: 176 IGRDLRRKLFG-RYSGYGRSRSRSRSLSPRY-RRDSDRRR 213
>ref|XP_006415744.1| hypothetical protein EUTSA_v10008280mg [Eutrema salsugineum]
gi|557093515|gb|ESQ34097.1| hypothetical protein
EUTSA_v10008280mg [Eutrema salsugineum]
Length = 308
Score = 274 bits (701), Expect = 8e-72
Identities = 133/159 (83%), Positives = 145/159 (91%), Gaps = 1/159 (0%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQP+DP KIQEHFEDF+ED++EEL KFGEIESLN+CDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK+
Sbjct: 116 FKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGT-RHAKFWGTRSRSRSASPPYHKRERER 11
+ RELRRKL+G R + G+RSRSRS S P HKRE +R
Sbjct: 176 VSRELRRKLFGRYRRSYRRGSRSRSRSIS-PRHKREHDR 213
>dbj|BAJ34257.1| unnamed protein product [Thellungiella halophila]
Length = 308
Score = 274 bits (701), Expect = 8e-72
Identities = 133/159 (83%), Positives = 145/159 (91%), Gaps = 1/159 (0%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQP+DP KIQEHFEDF+ED++EEL KFGEIESLN+CDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK+
Sbjct: 116 FKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGT-RHAKFWGTRSRSRSASPPYHKRERER 11
+ RELRRKL+G R + G+RSRSRS S P HKRE +R
Sbjct: 176 VSRELRRKLFGRYRRSYRRGSRSRSRSIS-PRHKREHDR 213
>ref|XP_002307825.1| U2 snRNP auxiliary factor small subunit family protein [Populus
trichocarpa] gi|222857274|gb|EEE94821.1| U2 snRNP
auxiliary factor small subunit family protein [Populus
trichocarpa]
Length = 272
Score = 273 bits (699), Expect = 1e-71
Identities = 133/162 (82%), Positives = 147/162 (90%), Gaps = 5/162 (3%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQP+DP KIQEHFEDFYEDI+EELSKFGEIE+LNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPLDPHKIQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAAL +LQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK+
Sbjct: 116 FKEEDQAAAALQSLQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASP-----PYHKRERE 14
IG++LRRKL+G R+ + +RSRSRS SP Y +RER+
Sbjct: 176 IGKDLRRKLFG-RYRGYRVSRSRSRSVSPRRRDRDYDRRERD 216
>ref|XP_006305464.1| hypothetical protein CARUB_v10009885mg [Capsella rubella]
gi|482574175|gb|EOA38362.1| hypothetical protein
CARUB_v10009885mg [Capsella rubella]
Length = 296
Score = 272 bits (695), Expect = 4e-71
Identities = 132/160 (82%), Positives = 145/160 (90%), Gaps = 2/160 (1%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQP+DP KIQEHFEDF+ED++EEL KFGEIESLN+CDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK+
Sbjct: 116 FKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGT-RHAKFWGTRSRSRSAS-PPYHKRERER 11
+ RELRRKL+G R + G+RSRSRS S P HKR+ +R
Sbjct: 176 VSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRHKRDYDR 215
>ref|XP_002863733.1| hypothetical protein ARALYDRAFT_494737 [Arabidopsis lyrata subsp.
lyrata] gi|297309568|gb|EFH39992.1| hypothetical protein
ARALYDRAFT_494737 [Arabidopsis lyrata subsp. lyrata]
Length = 280
Score = 271 bits (694), Expect = 5e-71
Identities = 134/162 (82%), Positives = 143/162 (88%), Gaps = 1/162 (0%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL+KFGE+ESLNVCDNLADHMIGNVYV
Sbjct: 56 DMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVL 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEED AAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK
Sbjct: 116 FKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQ 175
Query: 124 IGRELRRKLYGT-RHAKFWGTRSRSRSASPPYHKREREREKE 2
I RELRRKL+G R + G+RSRSRS S P KRE RE+E
Sbjct: 176 ISRELRRKLFGRYRRSYRRGSRSRSRSIS-PRRKREHSRERE 216
>ref|NP_199096.1| Splicing factor U2af small subunit B [Arabidopsis thaliana]
gi|42573547|ref|NP_974870.1| Splicing factor U2af small
subunit B [Arabidopsis thaliana]
gi|75334092|sp|Q9FMY5.1|U2AFB_ARATH RecName:
Full=Splicing factor U2af small subunit B; AltName:
Full=U2 auxiliary factor 35 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
small subunit B; Short=U2 snRNP auxiliary factor small
subunit B; AltName: Full=Zinc finger CCCH
domain-containing protein 60; Short=AtC3H60
gi|10177285|dbj|BAB10638.1| U2 snRNP auxiliary factor,
small subunit [Arabidopsis thaliana]
gi|22531195|gb|AAM97101.1| U2 snRNP auxiliary factor
small subunit [Arabidopsis thaliana]
gi|23198022|gb|AAN15538.1| U2 snRNP auxiliary factor
small subunit [Arabidopsis thaliana]
gi|332007485|gb|AED94868.1| Splicing factor U2af small
subunit B [Arabidopsis thaliana]
gi|332007486|gb|AED94869.1| Splicing factor U2af small
subunit B [Arabidopsis thaliana]
Length = 283
Score = 271 bits (694), Expect = 5e-71
Identities = 134/162 (82%), Positives = 143/162 (88%), Gaps = 1/162 (0%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL+KFGE+ESLNVCDNLADHMIGNVYV
Sbjct: 56 DMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVL 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEED AAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK
Sbjct: 116 FKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQ 175
Query: 124 IGRELRRKLYGT-RHAKFWGTRSRSRSASPPYHKREREREKE 2
I RELRRKL+G R + G+RSRSRS S P KRE RE+E
Sbjct: 176 ISRELRRKLFGRYRRSYRRGSRSRSRSIS-PRRKREHSRERE 216
>ref|XP_002300614.1| hypothetical protein POPTR_0002s00480g [Populus trichocarpa]
gi|566155509|ref|XP_006386121.1| hypothetical protein
POPTR_0002s00480g [Populus trichocarpa]
gi|566155511|ref|XP_006386122.1| U2 snRNP auxiliary
factor small subunit family protein [Populus
trichocarpa] gi|222842340|gb|EEE79887.1| hypothetical
protein POPTR_0002s00480g [Populus trichocarpa]
gi|550343978|gb|ERP63918.1| hypothetical protein
POPTR_0002s00480g [Populus trichocarpa]
gi|550343979|gb|ERP63919.1| U2 snRNP auxiliary factor
small subunit family protein [Populus trichocarpa]
Length = 273
Score = 271 bits (693), Expect = 7e-71
Identities = 132/160 (82%), Positives = 147/160 (91%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQP+DP KIQEHFE+FYEDI+EEL+KFGEIESLNVCDNLADHMIGNVYV
Sbjct: 56 DMITPGVDAQGQPLDPHKIQEHFEEFYEDIFEELNKFGEIESLNVCDNLADHMIGNVYVL 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK+
Sbjct: 116 FKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASPPYHKREREREK 5
IGR+LRRKL+G R+ + +RSRSRS SP KRER+ ++
Sbjct: 176 IGRDLRRKLFG-RYRGYRVSRSRSRSVSP--RKRERDYDR 212
>ref|XP_006403342.1| hypothetical protein EUTSA_v10003254mg [Eutrema salsugineum]
gi|557104455|gb|ESQ44795.1| hypothetical protein
EUTSA_v10003254mg [Eutrema salsugineum]
Length = 282
Score = 270 bits (691), Expect = 1e-70
Identities = 133/162 (82%), Positives = 144/162 (88%), Gaps = 2/162 (1%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV
Sbjct: 56 DMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELDKFGEVESLNVCDNLADHMIGNVYVL 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQYEE++CNRGGYCNFMHVK
Sbjct: 116 FKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEDNCNRGGYCNFMHVKQ 175
Query: 124 IGRELRRKLYGT-RHAKFWGTRSRSRSAS-PPYHKREREREK 5
I RELRRKL+G R + G+RSRSRS S P KRERER++
Sbjct: 176 ISRELRRKLFGRYRRSYRRGSRSRSRSRSISPRRKRERERDR 217
>ref|XP_002890741.1| hypothetical protein ARALYDRAFT_472969 [Arabidopsis lyrata subsp.
lyrata] gi|297336583|gb|EFH67000.1| hypothetical protein
ARALYDRAFT_472969 [Arabidopsis lyrata subsp. lyrata]
Length = 296
Score = 270 bits (691), Expect = 1e-70
Identities = 132/160 (82%), Positives = 145/160 (90%), Gaps = 2/160 (1%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQP+DP KIQEHFEDF+ED++EEL KFGEIESLN+CDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK+
Sbjct: 116 FKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGT-RHAKFWGTRSRSRSAS-PPYHKRERER 11
+ RELRRKL+G R + G+RSRSRS S P +KRE +R
Sbjct: 176 VSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKREYDR 215
>ref|NP_174086.1| splicing factor U2af small subunit A [Arabidopsis thaliana]
gi|75336807|sp|Q9S709.1|U2AFA_ARATH RecName:
Full=Splicing factor U2af small subunit A; AltName:
Full=U2 auxiliary factor 35 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
small subunit A; Short=U2 snRNP auxiliary factor small
subunit A; AltName: Full=Zinc finger CCCH
domain-containing protein 8; Short=AtC3H8
gi|5668775|gb|AAD46002.1|AC005916_14 Strong similarity
to gb|Y18349 U2 snRNP auxiliary factor, small subunit
from Oryza sativa. ESTs gb|AA586295 and gb|AA597332 come
from this gene [Arabidopsis thaliana]
gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10
[Arabidopsis thaliana]
gi|12744991|gb|AAK06875.1|AF344324_1 putative U2 snRNP
auxiliary factor [Arabidopsis thaliana]
gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|19699275|gb|AAL91249.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary
factor protein [Arabidopsis thaliana]
gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|21689611|gb|AAM67427.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
gi|332192737|gb|AEE30858.1| splicing factor U2af small
subunit A [Arabidopsis thaliana]
Length = 296
Score = 270 bits (690), Expect = 2e-70
Identities = 131/160 (81%), Positives = 145/160 (90%), Gaps = 2/160 (1%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQP+DP KIQEHFEDF+ED++EEL KFGEIESLN+CDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
FKEEDQAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK+
Sbjct: 116 FKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKL 175
Query: 124 IGRELRRKLYGT-RHAKFWGTRSRSRSAS-PPYHKRERER 11
+ RELRRKL+G R + G+RSRSRS S P +KR+ +R
Sbjct: 176 VSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDR 215
>ref|XP_002440251.1| hypothetical protein SORBIDRAFT_09g028530 [Sorghum bicolor]
gi|241945536|gb|EES18681.1| hypothetical protein
SORBIDRAFT_09g028530 [Sorghum bicolor]
Length = 307
Score = 270 bits (690), Expect = 2e-70
Identities = 128/159 (80%), Positives = 143/159 (89%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQPIDP+K+QEHFEDFYEDIYEEL KFGEIE+LNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
F+EE+QAAAA NALQGRFYSGRPII ++SPVTDFREATCRQ+EENSCNRGGYCNFMHVK
Sbjct: 116 FREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQ 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASPPYHKRERERE 8
IGR+LRRKLYG ++ + RSRSRS PP + R+R+
Sbjct: 176 IGRDLRRKLYGRSASRRYHGRSRSRS-PPPQRRGHRDRD 213
>ref|NP_001150605.1| splicing factor U2af 38 kDa subunit [Zea mays]
gi|195640524|gb|ACG39730.1| splicing factor U2af 38 kDa
subunit [Zea mays] gi|223947729|gb|ACN27948.1| unknown
[Zea mays] gi|407232662|gb|AFT82673.1| C3H4 C3H
transcription factor, partial [Zea mays subsp. mays]
gi|414591925|tpg|DAA42496.1| TPA: Splicing factor U2af
subunit isoform 1 [Zea mays]
gi|414591926|tpg|DAA42497.1| TPA: Splicing factor U2af
subunit isoform 2 [Zea mays]
gi|414591927|tpg|DAA42498.1| TPA: Splicing factor U2af
subunit isoform 3 [Zea mays]
gi|414591928|tpg|DAA42499.1| TPA: Splicing factor U2af
subunit isoform 4 [Zea mays]
Length = 299
Score = 270 bits (690), Expect = 2e-70
Identities = 128/159 (80%), Positives = 143/159 (89%)
Frame = -3
Query: 484 DMITPGVDAQGQPIDPDKIQEHFEDFYEDIYEELSKFGEIESLNVCDNLADHMIGNVYVQ 305
DMITPGVDAQGQPIDP+K+QEHFEDFYEDIYEEL KFGEIE+LNVCDNLADHMIGNVYVQ
Sbjct: 56 DMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIGNVYVQ 115
Query: 304 FKEEDQAAAALNALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKM 125
F+EE+QAAAA NALQGRFYSGRPII ++SPVTDFREATCRQ+EENSCNRGGYCNFMHVK
Sbjct: 116 FREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQ 175
Query: 124 IGRELRRKLYGTRHAKFWGTRSRSRSASPPYHKRERERE 8
IGR+LRRKLYG ++ + RSRSRS PP + R+R+
Sbjct: 176 IGRDLRRKLYGRSASRRYHGRSRSRS-PPPQRRGHRDRD 213