BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00015576
         (1785 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus...   557   e-156
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   464   e-128
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   461   e-127
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   453   e-124
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   450   e-123
ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   446   e-122
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           444   e-122
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   439   e-120
ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [...   432   e-118
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   430   e-118
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   430   e-118
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   425   e-116
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   424   e-116
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...   419   e-114
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   415   e-113
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   415   e-113
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   409   e-111
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   405   e-110
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   398   e-108
ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit...   396   e-107

>gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus guttatus]
          Length = 457

 Score =  557 bits (1436), Expect = e-156
 Identities = 285/413 (69%), Positives = 330/413 (79%), Gaps = 6/413 (1%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPEETSATTALKWILKCCPNLPRSLVQKLFRLRQV-- 401
            QWL LPPF P ADGCSIGK+L G+P +   TTALKWILKCCP++PR LVQKLFRLRQV  
Sbjct: 46   QWLTLPPFNPNADGCSIGKRLSGQPADAK-TTALKWILKCCPHIPRCLVQKLFRLRQVHF 104

Query: 402  ---RKECSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEEDRKF 572
               RKE S+ E  EQRP+R+GAKDLM IGDRI+LPKSVD  S  TTA +++F  E++ +F
Sbjct: 105  LLIRKESSNMEDKEQRPKRIGAKDLMDIGDRIFLPKSVDGTSPSTTAESRNFFDEKEMEF 164

Query: 573  VQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSS 752
            V+SLELYKD AIIVINKPPG+PVQGG+GI+RSLDELAAKYL++D  E PRLVHRLDRDSS
Sbjct: 165  VRSLELYKDPAIIVINKPPGLPVQGGIGIKRSLDELAAKYLKFDFTESPRLVHRLDRDSS 224

Query: 753  GILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRYLALVIGSPRRRQGSISVPL 932
            GILVMGRTQLSTT+LHSVFREKT GA N+V G K ILQK+Y ALVIGSPRRR+G ISVPL
Sbjct: 225  GILVMGRTQLSTTILHSVFREKTFGASNNVCGNKKILQKKYWALVIGSPRRREGLISVPL 284

Query: 933  MKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHC 1112
            +KVV D+GKSERITVA+ +NTL  QHAVT+YRVIASS  GY+WLELSPLTGRKHQLRVHC
Sbjct: 285  VKVVLDNGKSERITVAENNNTLSAQHAVTEYRVIASSSRGYSWLELSPLTGRKHQLRVHC 344

Query: 1113 AEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXXXXXXXEQF 1292
            AEVL TPIVGDYKYG QAH+KL  +L+S SD K GD  SK                 +QF
Sbjct: 345  AEVLGTPIVGDYKYGWQAHKKLGHHLDSVSDPKWGDEISKVKNDTFALELESGSISDKQF 404

Query: 1293 SLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNAPLPPHMQRSWDLLN 1448
             LHLHCKEM LPDI+  L++ ++ +DLD+A + +I L A LP HMQRSW LL+
Sbjct: 405  RLHLHCKEMSLPDITQALKYASINSDLDTAEMKSITLEACLPAHMQRSWSLLS 457


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  464 bits (1193), Expect = e-128
 Identities = 246/425 (57%), Positives = 301/425 (70%), Gaps = 17/425 (4%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPEETS--------ATTALKWILKCCPNLPRSLVQKL 383
            +W  LP FTP  D  S+GK L G   + +        +TTALKW+++CCP LPRSLVQKL
Sbjct: 55   KWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSLVQKL 114

Query: 384  FRLRQVRKECSSAETN-------EQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQ 542
            FRLRQVR+E  +  T+       E R +RV AKDLM +GD+I LP +V+E     +  ++
Sbjct: 115  FRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEFP---SEKHE 171

Query: 543  SFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPR 722
               ++E+  FV +LELYKD AIIV+NKPPG+PVQGG+GI+RSLDELAA YLRYD  EPPR
Sbjct: 172  YHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPR 231

Query: 723  LVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQKRYLALVIGSP 899
            LVHRLDRDSSGIL+MGRTQ S T+LHS+FREKT GA N D+   K ILQ+RY ALVIGSP
Sbjct: 232  LVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSP 291

Query: 900  RRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPL 1079
            RR +G IS PL KVV DDGKSERIT+ D   T+  QHA+T+YRVI SS  GYTWLELSPL
Sbjct: 292  RRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPL 351

Query: 1080 TGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXX 1259
            TGRKHQLRVHCAEVL TPIVGDYKYG QAHRK +Q  +S  +  L +  S          
Sbjct: 352  TGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGLD 411

Query: 1260 XXXXXXXXEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNAPLPPHMQRSW 1436
                    +Q  LHLHCK+M+LP++S+ LQ+  + A+ D + + ++   APLP HMQRSW
Sbjct: 412  LESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQRSW 471

Query: 1437 DLLNS 1451
            D+LNS
Sbjct: 472  DILNS 476


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  461 bits (1186), Expect = e-127
 Identities = 253/465 (54%), Positives = 309/465 (66%), Gaps = 7/465 (1%)
 Frame = +3

Query: 78   LRLLLRRWQPNAAAPGCGITFNKAIYVRQCCYXXXXXXXXXXXXXXXXXIQWLILPPFTP 257
            LR ++ R +   AA     T   A Y  QC Y                  +WL LPPFT 
Sbjct: 7    LRRVVHRSRQLFAASDDVQTLYSAFYRFQCHYATTVTAAQVCNRNENEKAKWLTLPPFTA 66

Query: 258  TADGCSIGKKLYG-----RPEETSATTALKWILKCCPNLPRSLVQKLFRLRQVRKECSSA 422
            T +G ++G++L G     +   T+  TALKW+ +CCP LP+SLVQKLFRLRQVR++ S+ 
Sbjct: 67   TVNGAALGRELAGVKMDVKENSTNTMTALKWVQRCCPELPKSLVQKLFRLRQVRRDSSNV 126

Query: 423  ETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEEDRKFVQSLELYKDS 602
            E  EQRP+RV AK+ M +GDRI+LP +V +   P+       SSEE+RKFV SLELYKD 
Sbjct: 127  E--EQRPKRVSAKESMNVGDRIFLPITVQK--FPSEKVVYYPSSEEERKFVHSLELYKDP 182

Query: 603  AIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQL 782
             I+V+NKPPGMPVQGG+GI+RSLDELAAKY+R+++ E PRLVHRLDRD SG+LVMGRTQL
Sbjct: 183  EIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLDRDCSGLLVMGRTQL 242

Query: 783  STTVLHSVFREKTIGAFN-DVLGGKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGK 959
            S + LHS+FREKT  + N D+   K ILQK+Y ALVIG PRR  G IS PL K+V D+GK
Sbjct: 243  SASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGK 302

Query: 960  SERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIV 1139
            SERIT+         Q+AVT+YR+I SS  GYTWLELSPLTGRKHQLRVHCAE L TPIV
Sbjct: 303  SERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIV 362

Query: 1140 GDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXXXXXXXEQFSLHLHCKEM 1319
            GDYKYG QAHRKL+      S L LG    +                 +Q  LHLHCKEM
Sbjct: 363  GDYKYGWQAHRKLKHLPLPTSVLNLGVQIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEM 422

Query: 1320 ILPDISVVLQHGN-VADLDSARIGNIMLNAPLPPHMQRSWDLLNS 1451
            +LP+IS+ LQ    V+D D   + +I L APLP HMQ+SWD L+S
Sbjct: 423  VLPNISLALQRAQVVSDTDLVDVESIKLVAPLPFHMQKSWDCLSS 467


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  453 bits (1166), Expect = e-124
 Identities = 235/418 (56%), Positives = 298/418 (71%), Gaps = 10/418 (2%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKL--------YGRPEETSATTALKWILKCCPNLPRSLVQKL 383
            +W  LPPFT T +G ++G++L        Y +P   +ATTALKW+ +CCP +PR+LVQKL
Sbjct: 51   KWFTLPPFTDTVNGAALGRELSRSVGRDVYAKPSAAAATTALKWVTRCCPEIPRNLVQKL 110

Query: 384  FRLRQVRKECSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEED 563
            FRLRQVR+E S  + + Q  +RVG KD M +GDRI LP SV E   P     +   SEE+
Sbjct: 111  FRLRQVRREASDMDQSVQPLKRVGTKDSMNLGDRICLPISVKE--FPDHKQKEGHCSEEE 168

Query: 564  RKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDR 743
             +F++SL LYKD AIIVINKPPG+PVQGG+GI+RSLDELAA  L YD  +PPRLVHRLDR
Sbjct: 169  AEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDELAATCLSYDLSQPPRLVHRLDR 228

Query: 744  DSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNILQKRYLALVIGSPRRRQGSI 920
            D SGILVMGRTQ S TVLHSVFREKT GA +DV+   K+ILQ+RYLALVIGSPR+++G I
Sbjct: 229  DCSGILVMGRTQTSATVLHSVFREKTFGASDDVIKHAKSILQRRYLALVIGSPRQQEGLI 288

Query: 921  SVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQL 1100
            SVPL KVV D+GKS+RIT+ +K+  LP QHA+T Y+VI SS  G+TWLEL PLTGRKHQL
Sbjct: 289  SVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKVIGSSCPGFTWLELIPLTGRKHQL 348

Query: 1101 RVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXXXXXX 1280
            RVHCAEVL TPIVGDYKYG + H+  +    S ++    +  SK                
Sbjct: 349  RVHCAEVLGTPIVGDYKYGWRTHKDWKPVAWSKTECHSNEERSKRKNLPFDLNMDSGSID 408

Query: 1281 XEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNAPLPPHMQRSWDLLNS 1451
             +   LHLH K+M+LP++S+ LQ+  + A+ D + + +I L AP+P +MQ+SWD+ NS
Sbjct: 409  EKNLRLHLHSKQMVLPNVSLALQNVKLHAECDLSGLESIELVAPMPSYMQKSWDITNS 466


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  450 bits (1157), Expect = e-123
 Identities = 245/446 (54%), Positives = 297/446 (66%), Gaps = 7/446 (1%)
 Frame = +3

Query: 135  TFNKAIYVRQCCYXXXXXXXXXXXXXXXXXIQWLILPPFTPTADGCSIGKKLYG-----R 299
            T   A Y  QC Y                  +WL LPPFT   +G ++G++L G      
Sbjct: 26   TLYSAFYRLQCHYATTVTDAQVCNRNENEKAKWLTLPPFTAAVNGAALGRELAGVKMDVN 85

Query: 300  PEETSATTALKWILKCCPNLPRSLVQKLFRLRQVRKECSSAETNEQRPRRVGAKDLMGIG 479
               T+  TALKW+ +CCP LP+SLVQKLFRLRQVR++ S+ E  EQRP+RV AK+ M +G
Sbjct: 86   ENSTNTMTALKWVQRCCPELPKSLVQKLFRLRQVRRDSSNVE--EQRPKRVSAKESMNVG 143

Query: 480  DRIYLPKSVDERSHPTTANNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGI 659
            DRI+LP +V +   P+       SSEE+RKFV SLELYKD+ IIV+NKPPGMPVQGG+GI
Sbjct: 144  DRIFLPITVQK--FPSEKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGI 201

Query: 660  RRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN- 836
            +RSLDELAAKY+ + + E PRLVHRLDRD SG+LVMGRTQLS + LHS+FREKT  + N 
Sbjct: 202  KRSLDELAAKYMSHQYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNE 261

Query: 837  DVLGGKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAV 1016
            D+   K ILQK+Y ALVIG PRR  G IS PL K+V D+GKSERIT+         Q+AV
Sbjct: 262  DLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAV 321

Query: 1017 TDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLES 1196
            T+YR+I SS  GYTWLELSPLTGRKHQLRVHCAE L TPIVGDYKYG QAHRKL+     
Sbjct: 322  TEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLP 381

Query: 1197 ASDLKLGDMPSKADKXXXXXXXXXXXXXXEQFSLHLHCKEMILPDISVVLQHGN-VADLD 1373
             S L L     +                 +Q  LHLHCKEM+LP+IS+ LQ    V+D D
Sbjct: 382  TSVLNLVVEIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDAD 441

Query: 1374 SARIGNIMLNAPLPPHMQRSWDLLNS 1451
               + +I L APLP HMQ+SWD L++
Sbjct: 442  LVDVESIKLVAPLPFHMQKSWDCLSA 467


>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395210|gb|EMJ01009.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  446 bits (1148), Expect = e-122
 Identities = 244/435 (56%), Positives = 297/435 (68%), Gaps = 27/435 (6%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKL-----YGRPEET---------SATTALKWILKCCPNLPR 365
            +W  LPPFT T +G ++GK+L     YGR   T         + TTALKW+ +CCP LPR
Sbjct: 49   KWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPR 108

Query: 366  SLVQKLFRLRQVRKE-----CSS--AETNEQRPRRVGAKDLMGIGDRIYLPKSVDE---- 512
            SLVQKLFRLRQVR+E     CS    E  E+  +RV AKD M +GDRI+LP SV E    
Sbjct: 109  SLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPND 168

Query: 513  RSHPTTANNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKY 692
            +        + + SEE+  F++SLELYKD AIIVINKPPGMPVQGG+GI+RSLDELAA  
Sbjct: 169  KQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAAC 228

Query: 693  LRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNILQK 869
            L YD  EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT GA ND +   K ILQ+
Sbjct: 229  LSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQR 288

Query: 870  RYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPS 1049
            RY ALVIGSPR+R+G IS PL KVV D+GKS+RIT+ + S TLP QHA+T Y+VI S   
Sbjct: 289  RYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPCP 348

Query: 1050 GYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPS 1229
            GYTWLEL+PLTGRKHQLRVHCAEVLRTPIVGDYKYG Q HR  +    S ++    +   
Sbjct: 349  GYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNECHSDEEFP 408

Query: 1230 KADKXXXXXXXXXXXXXXEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNA 1406
            K                 +   LHLHCK+M+LP++++ LQ+  + +D D + + ++ L A
Sbjct: 409  KRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLHSDSDLSELESLELVA 468

Query: 1407 PLPPHMQRSWDLLNS 1451
             LP  MQRSW++ NS
Sbjct: 469  ALPSFMQRSWNITNS 483


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  444 bits (1143), Expect = e-122
 Identities = 237/426 (55%), Positives = 292/426 (68%), Gaps = 18/426 (4%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPEE---------TSATTALKWILKCCPNLPRSLVQK 380
            +W  LPP T T DG  +GK + G  ++         ++ATTALKW+++CCP LPRSLVQK
Sbjct: 48   KWFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPRSLVQK 107

Query: 381  LFRLRQVRKECSSAET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANN 539
            LFRLRQVR+E  + E         + R RRV AKD + +GD+I+LP SV E         
Sbjct: 108  LFRLRQVRRESFNVEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISVKELP---VEKK 164

Query: 540  QSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPP 719
            + F +EE+ KF++SLELYKD AI+V+NKPPG+PVQGG+GI+ SLD+LA   L YD+ EPP
Sbjct: 165  ECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPP 224

Query: 720  RLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFND-VLGGKNILQKRYLALVIGS 896
            RLVHRLDRD SGILVMGRTQ S TVLHS+FREKT GA ND  + GK +LQ+RY A VIGS
Sbjct: 225  RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWAFVIGS 284

Query: 897  PRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSP 1076
            PR   G IS PL KVV D+GKS+RITV + S+TL  QHA+T Y+VI SS  GYTWLELSP
Sbjct: 285  PRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGYTWLELSP 344

Query: 1077 LTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXX 1256
            LTGRKHQLRVHCAEVL TP+VGDYKYG QAHR  +       D K  ++  K        
Sbjct: 345  LTGRKHQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCIEVLPKRKNLPFGL 404

Query: 1257 XXXXXXXXXEQFSLHLHCKEMILPDISVVLQH-GNVADLDSARIGNIMLNAPLPPHMQRS 1433
                     +   LHLHCK+M+LP+IS VLQ+    +D + +R+  + L+APLP +MQRS
Sbjct: 405  NMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRLERLKLDAPLPSYMQRS 464

Query: 1434 WDLLNS 1451
            W L NS
Sbjct: 465  WHLTNS 470


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395209|gb|EMJ01008.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  439 bits (1130), Expect = e-120
 Identities = 243/435 (55%), Positives = 296/435 (68%), Gaps = 27/435 (6%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKL-----YGRPEET---------SATTALKWILKCCPNLPR 365
            +W  LPPFT T +G ++GK+L     YGR   T         + TTALKW+ +CCP LPR
Sbjct: 49   KWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPR 108

Query: 366  SLVQKLFRLRQVRKE-----CSS--AETNEQRPRRVGAKDLMGIGDRIYLPKSVDE---- 512
            SLVQKLFRLRQVR+E     CS    E  E+  +RV AKD M +GDRI+LP SV E    
Sbjct: 109  SLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPND 168

Query: 513  RSHPTTANNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKY 692
            +        + + SEE+  F++SLELYKD AIIVINKPPGMPVQGG+GI+RSLDELAA  
Sbjct: 169  KQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAAC 228

Query: 693  LRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVL-GGKNILQK 869
            L YD  EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT GA ND +   K ILQ+
Sbjct: 229  LSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQR 288

Query: 870  RYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPS 1049
            RY ALVIGSPR+R+G IS PL KVV D+GKS+RIT+ + S TLP QHA+T Y+VI S   
Sbjct: 289  RYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGS--P 346

Query: 1050 GYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPS 1229
             YTWLEL+PLTGRKHQLRVHCAEVLRTPIVGDYKYG Q HR  +    S ++    +   
Sbjct: 347  CYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNECHSDEEFP 406

Query: 1230 KADKXXXXXXXXXXXXXXEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNA 1406
            K                 +   LHLHCK+M+LP++++ LQ+  + +D D + + ++ L A
Sbjct: 407  KRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLHSDSDLSELESLELVA 466

Query: 1407 PLPPHMQRSWDLLNS 1451
             LP  MQRSW++ NS
Sbjct: 467  ALPSFMQRSWNITNS 481


>ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
            gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine
            synthase, putative [Theobroma cacao]
          Length = 477

 Score =  432 bits (1112), Expect = e-118
 Identities = 232/419 (55%), Positives = 291/419 (69%), Gaps = 11/419 (2%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPEETSA--TTALKWILKCCPNLPRSLVQKLFRLRQV 401
            +W  LPPFT T +   +G KL G+P   +A  TTA+KW+++CCP LPRSLVQKLFRLRQV
Sbjct: 62   KWFTLPPFTKTVNASVLGAKLSGKPHSKAANETTAVKWVMRCCPELPRSLVQKLFRLRQV 121

Query: 402  RKEC-------SSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEE 560
            R+E           +    + +RVGAKD + IGDRI+LP SV E         +S  +EE
Sbjct: 122  RRESHVLEVAGDGCQVQTVQLKRVGAKDALNIGDRIFLPFSVREFREE---KQESGCTEE 178

Query: 561  DRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLD 740
            +  F++ LELYKD AIIV+NKPPGMPVQGG+GI+ SLD+LAA  L +D+ EPPRLVHRLD
Sbjct: 179  ELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEPPRLVHRLD 238

Query: 741  RDSSGILVMGRTQLSTTVLHSVFREKTIGAF-NDVLGGKNILQKRYLALVIGSPRRRQGS 917
            RDSSGILVMGRTQ+S T+LHSVFRE+T  A  +DV   K ILQKRY ALVIGSPRR +G 
Sbjct: 239  RDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVIGSPRRPKGM 298

Query: 918  ISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQ 1097
            I  PL KVV DDGKS+RITV D S  +  Q A T+Y+VI ++  GYTWLELSPLTGRKHQ
Sbjct: 299  IVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELSPLTGRKHQ 358

Query: 1098 LRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXXXXX 1277
            LRVHCAEVL TPIVGDYKYG QAHR+ +   ES       D   + +             
Sbjct: 359  LRVHCAEVLGTPIVGDYKYGWQAHRRWQHLPESDLKKSSNDKCPEENMLPFGLNMDSGSI 418

Query: 1278 XXEQFSLHLHCKEMILPDISVVLQHGNVA-DLDSARIGNIMLNAPLPPHMQRSWDLLNS 1451
              ++  LHLHC+EMI P++S  LQ+  ++ D D +++ ++ + APLP +MQ+SWD++NS
Sbjct: 419  SAKRPRLHLHCREMIFPNVSQALQNLQLSTDHDLSKLKSLEVVAPLPSYMQKSWDIMNS 477


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  430 bits (1106), Expect = e-118
 Identities = 235/419 (56%), Positives = 289/419 (68%), Gaps = 11/419 (2%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPEET--SATTALKWILKCCPNLPRSLVQKLFRLRQV 401
            +W  LPPFT T DG ++G++L   P ++  S TTALKW+L+CCP LPR+ VQKLFRL QV
Sbjct: 80   KWFTLPPFTSTIDGSALGRQL-ACPSKSPISETTALKWVLQCCPGLPRNFVQKLFRLSQV 138

Query: 402  RKECSSAETN-------EQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEE 560
            R+E  S +++       E + +RV AKD + +GDRI+LP S+ E     +   +   +EE
Sbjct: 139  RRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESP---SRKEKCPCTEE 195

Query: 561  DRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLD 740
            +  F+QSLELYKDSAIIVINKP GMPVQGG+GIRRS+DELAA  L YD+ EPPRLVHRLD
Sbjct: 196  EVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLD 255

Query: 741  RDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQKRYLALVIGSPRRRQGS 917
            RDSSGILVMGRTQ S TVLHS+FREKT  A   D    K ILQ+ Y ALV+G+PR  +G 
Sbjct: 256  RDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGV 315

Query: 918  ISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQ 1097
            IS PL KVV D+GKS+RITV +    +  QHAVT Y+VI  S  GYTWL+LSPLTGRKHQ
Sbjct: 316  ISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 375

Query: 1098 LRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXXXXX 1277
            LRVHCAEVL TPIVGDYKYG Q HRK +Q+  S  +    D   K               
Sbjct: 376  LRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSI 435

Query: 1278 XXEQFSLHLHCKEMILPDISVVLQHGNVAD-LDSARIGNIMLNAPLPPHMQRSWDLLNS 1451
              +Q  LHLHCKEM LP++S  +Q   ++   D +++ ++ L APLP HMQRSWD+LNS
Sbjct: 436  LEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSHMQRSWDVLNS 494


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            gi|550331407|gb|EEE87831.2| hypothetical protein
            POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  430 bits (1106), Expect = e-118
 Identities = 235/418 (56%), Positives = 289/418 (69%), Gaps = 12/418 (2%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGR--PEETSATTALKWILKCCPNLPRSLVQKLFRLRQV 401
            +W  LPP+T T +G  +G  L  R   +  S TTALKW+L+CCP LPR+LVQKLFRLRQV
Sbjct: 57   KWFTLPPYTSTINGSVLGIALSARIPAKSASETTALKWVLRCCPELPRNLVQKLFRLRQV 116

Query: 402  RKECSSAET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEE 560
            R+E    E+        E R +RV AKD M +GDRI+LP SV               +EE
Sbjct: 117  RRESPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKVLP---AEKQDCHCNEE 173

Query: 561  DRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLD 740
            +  F++ LELYKD+AIIV+NKPPGMPVQGG+GI+RSLDEL+A     D+ EPPRLVHRLD
Sbjct: 174  EINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLD 233

Query: 741  RDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGK-NILQKRYLALVIGSPRRRQGS 917
            RD SGILVMGRTQ S TVLH++FREKT+ A ND +G K  ILQ++Y ALVIGSPRR +G 
Sbjct: 234  RDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGL 293

Query: 918  ISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQ 1097
            IS PL KVV D+GKS+RITV + S  L  QHAVT YRVI SS  G+TWLELSPLTGRKHQ
Sbjct: 294  ISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESS-HGFTWLELSPLTGRKHQ 352

Query: 1098 LRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXXXXX 1277
            LRVHCAEVL TPIVGDYKY  QAHR  +Q   S  +    D  S ++K            
Sbjct: 353  LRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSND-KSLSEKILPFALDLDSGS 411

Query: 1278 XXEQF-SLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNAPLPPHMQRSWDLL 1445
              E+   LHLHCK+M+LPD+S  LQ   + +D D +++ ++  +APLPP+M++SWD+L
Sbjct: 412  ISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDIL 469


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
            gi|482566291|gb|EOA30480.1| hypothetical protein
            CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  425 bits (1092), Expect = e-116
 Identities = 234/426 (54%), Positives = 293/426 (68%), Gaps = 15/426 (3%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPE------ETSATTALKWILKCCPNLPRSLVQKLFR 389
            +WL LPPF+PT DG ++GK+L    +      ++S TTAL+WIL+C P+LPR+LVQKLFR
Sbjct: 54   KWLTLPPFSPTVDGTAVGKELASEGDSITGSTDSSTTTALRWILRCRPDLPRTLVQKLFR 113

Query: 390  LRQVRKE----CSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFS-S 554
            LRQVR+E    C   E    + +RV AK+ + +GDRIYLP SVD  + P  A  +SF  S
Sbjct: 114  LRQVRREMSVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPPPAKKESFRCS 173

Query: 555  EEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHR 734
            EE+RKFV SL LYKD +IIV+NKP GM VQGG GI+ S+DELAA  L +D  E PRLVHR
Sbjct: 174  EEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFDKSESPRLVHR 233

Query: 735  LDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNI--LQKRYLALVIGSPRR 905
            LDRD SG+LV+ RTQ + TVLHS+FREKT GA     G  KNI  L+++Y+ALVIG PRR
Sbjct: 234  LDRDCSGLLVLARTQTAATVLHSIFREKTSGA--SAYGVKKNIKSLKRKYMALVIGCPRR 291

Query: 906  RQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTG 1085
            ++G IS PL KVV DDGKS+RITV D    +  QHA+T+YRVI SSP GYTWLEL PLTG
Sbjct: 292  QRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTG 351

Query: 1086 RKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXX 1265
            RKHQLRVHCAEVL TPIVGDYKYG QAH+  E  + S       + P+K           
Sbjct: 352  RKHQLRVHCAEVLGTPIVGDYKYGWQAHKSREPLVTSE------NTPTKPQSSPFGLDLD 405

Query: 1266 XXXXXXEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNAPLPPHMQRSWDL 1442
                  +Q  LHLH K++ LP+IS +L+   V +D D + I ++  +APLP HMQ S++L
Sbjct: 406  GGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDIDSLKFDAPLPTHMQLSFNL 465

Query: 1443 LNSNLQ 1460
            L S ++
Sbjct: 466  LKSKVE 471


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  424 bits (1091), Expect = e-116
 Identities = 232/415 (55%), Positives = 289/415 (69%), Gaps = 7/415 (1%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRP--EETSATTALKWILKCCPNLPRSLVQKLFRLRQV 401
            ++  LPP+T T  G ++GK L      + ++ TTALKW+L+CCP LPR+LVQKLFRLRQV
Sbjct: 127  KFFTLPPYTSTISGSALGKALSATATAKASTETTALKWVLRCCPELPRNLVQKLFRLRQV 186

Query: 402  RKECSSAETNEQ--RPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEEDRKFV 575
            ++E  +    E   + +RV AKDLM +GDRI+LP SV           +    E++  F+
Sbjct: 187  KRELLNVGDGEMEHKTKRVAAKDLMNVGDRIFLPISVQALPFE---KQKCHCGEKEANFI 243

Query: 576  QSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSG 755
            + LELYKD AIIV+NKPPGMPVQGG+GI+ S DELAA  L YD+ EPPRLVHRLDRDSSG
Sbjct: 244  RGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSG 303

Query: 756  ILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNILQKRYLALVIGSPRRRQGSISVPL 932
            ILVMGRTQ ST VLHSVFREKT  A N  +G  + ILQ++Y ALVIGSPRR++G IS PL
Sbjct: 304  ILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPL 363

Query: 933  MKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHC 1112
             KVV DDGKS+RITV + + +   QHAVT YRV+ SS  GY WLELSP+TGRKHQLRVHC
Sbjct: 364  GKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESS-HGYAWLELSPITGRKHQLRVHC 422

Query: 1113 AEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXXXXXXXEQF 1292
            AEVL TPIVGDYKYG Q HRK +Q L   +  K+ +  +   K              E+ 
Sbjct: 423  AEVLGTPIVGDYKYGWQVHRKWKQ-LPFPNLEKISNENALCKKILPFGIDLESGSISEKH 481

Query: 1293 -SLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNAPLPPHMQRSWDLLNS 1451
              LHLHCK+M+LPD+S  L+     ++ D + + +I L+APLP +MQRSWD+LNS
Sbjct: 482  PRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQRSWDILNS 536


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
            gi|557107647|gb|ESQ47954.1| hypothetical protein
            EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score =  419 bits (1076), Expect = e-114
 Identities = 229/423 (54%), Positives = 288/423 (68%), Gaps = 12/423 (2%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPEETSA-----TTALKWILKCCPNLPRSLVQKLFRL 392
            +WL LPPF+PT D  ++GK+L+   +   A     TTAL+WIL+C P+LPR+LVQKLFRL
Sbjct: 57   KWLTLPPFSPTIDAAAVGKELFSDGDSVKASSDGSTTALRWILRCRPDLPRTLVQKLFRL 116

Query: 393  RQVRKE----CSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEE 560
            RQVR+E    C   E    + +RV AK+ + +GDRIYLP SV+  + P         SEE
Sbjct: 117  RQVRREMSLSCDGDELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPPPAKKESFCCSEE 176

Query: 561  DRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLD 740
            +RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA  L +   E PRLVHRLD
Sbjct: 177  ERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFGKSESPRLVHRLD 236

Query: 741  RDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGKNI--LQKRYLALVIGSPRRRQG 914
            RD SG+LV+GRTQ + TVLHS+FREKT GA +     KNI  L+++YLALVIG PRR++G
Sbjct: 237  RDCSGLLVLGRTQTAATVLHSIFREKTSGA-SAYSVKKNIKSLKRKYLALVIGCPRRQRG 295

Query: 915  SISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKH 1094
             IS PL KVV DDGKS+RITV D    +  QHA+T+YRVI SSP GYTWLEL PLTGRKH
Sbjct: 296  QISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKH 355

Query: 1095 QLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXXXX 1274
            QLRVHCAEVL TPI+GDYKYG QAH+  E ++ S      G+ P+K              
Sbjct: 356  QLRVHCAEVLGTPILGDYKYGWQAHKSREPFVSS------GNTPTKPSLSPFGLDLDGGD 409

Query: 1275 XXXEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNAPLPPHMQRSWDLLNS 1451
               +Q  LHLH K++ LP+IS +L+   V +D DS+    +  +APLP HMQ S++LL S
Sbjct: 410  VSSKQPHLHLHSKQIDLPNISQLLEQLEVSSDSDSSEHDCLKFDAPLPAHMQLSFNLLKS 469

Query: 1452 NLQ 1460
             ++
Sbjct: 470  RVE 472


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudouridine synthase 4, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 4; AltName:
            Full=RNA-uridine isomerase 4; Flags: Precursor
            gi|11994467|dbj|BAB02469.1| unnamed protein product
            [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
            thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
            synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  415 bits (1067), Expect = e-113
 Identities = 229/425 (53%), Positives = 291/425 (68%), Gaps = 14/425 (3%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPE------ETSATTALKWILKCCPNLPRSLVQKLFR 389
            +WL LPPF+PT DG ++GK L    +      + S TTAL+WIL+C P+LPR+LVQKLFR
Sbjct: 54   KWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFR 113

Query: 390  LRQVRKECSSA----ETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTT-ANNQSFS- 551
            LRQVR+E S +    E    + +RV AK+ + +GDRIYLP SVD  +  T  A  +SF  
Sbjct: 114  LRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQC 173

Query: 552  SEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVH 731
            S+E+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA  L++D  E PRLVH
Sbjct: 174  SDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVH 233

Query: 732  RLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQKRYLALVIGSPRRR 908
            RLDRD SG+LV+ RTQ + TVLHS+FREKT GA    V      L+++Y+ALVIG P R+
Sbjct: 234  RLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQ 293

Query: 909  QGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGR 1088
            +G IS PL KVV DDGKSERITV D    +  QHA+T+YRVI SSP GYTWLEL PLTGR
Sbjct: 294  RGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGR 353

Query: 1089 KHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXX 1268
            KHQLRVHCAEVL TPIVGDYKYG QAH+  E ++ S ++      P+K            
Sbjct: 354  KHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENN------PTKQSSSPFGLDLDG 407

Query: 1269 XXXXXEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNAPLPPHMQRSWDLL 1445
                 +Q  LHLH K++ LP+IS +L+   V +D D + + ++  +APLP HMQ S++LL
Sbjct: 408  GDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLL 467

Query: 1446 NSNLQ 1460
             S ++
Sbjct: 468  KSRVE 472


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 477

 Score =  415 bits (1066), Expect = e-113
 Identities = 231/426 (54%), Positives = 293/426 (68%), Gaps = 16/426 (3%)
 Frame = +3

Query: 231  WLILPPFTPTADGCSIGKKLYGRPE------ETSATTALKWILKCCPNLPRSLVQKLFRL 392
            WL LPPF+PT DG ++GK L    +      + S TTAL+WIL+C P+LPR+LVQKLFRL
Sbjct: 55   WLTLPPFSPTIDGTAVGKDLLSDGDSVKASTDNSKTTALRWILRCRPDLPRTLVQKLFRL 114

Query: 393  RQVRKECSSA----ETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTT-ANNQSFS-S 554
            RQVR++ S +    E    + +RV AK+ + +GDRIYLP SVD  + PT  A  +SF  S
Sbjct: 115  RQVRRQMSLSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPPTPPAKKESFQCS 174

Query: 555  EEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHR 734
            EE+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA  L +D  E PRLVHR
Sbjct: 175  EEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAATCLTFDKSESPRLVHR 234

Query: 735  LDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNI--LQKRYLALVIGSPRR 905
            LDRD SG+LV+ RTQ + TVLHS+FREKT GA     G  KNI  L+++Y+ALVIG PRR
Sbjct: 235  LDRDCSGLLVLARTQTAATVLHSIFREKTCGA--SAYGVKKNIKSLKRKYMALVIGCPRR 292

Query: 906  RQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTG 1085
            ++G IS PL KVV DDGKS+RITV D    +  QHA+T+Y+VI SSP GYTWLEL PLTG
Sbjct: 293  QKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIESSPHGYTWLELRPLTG 352

Query: 1086 RKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXX 1265
            RKHQLRVHCAEVL TPI+GDYKYG QAH+  E ++ S +       P+K           
Sbjct: 353  RKHQLRVHCAEVLGTPILGDYKYGWQAHKAREPFVSSET------TPTKPSSSPFGLDLD 406

Query: 1266 XXXXXXEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGNIMLNAPLPPHMQRSWDL 1442
                  +Q  LHLH K++ LP+IS +L+   V +D D + + ++  +APLP HMQ S++L
Sbjct: 407  GGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNL 466

Query: 1443 LNSNLQ 1460
            L S ++
Sbjct: 467  LKSRVE 472


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  409 bits (1052), Expect = e-111
 Identities = 223/435 (51%), Positives = 288/435 (66%), Gaps = 28/435 (6%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLY---GRPE---ETSATTALKWILKCCPNLPRSLVQKLFR 389
            +W  LPP+T T +G  +G ++    G+ E    T+A TALKW+++CCP LPRSLVQKLFR
Sbjct: 59   RWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPRSLVQKLFR 118

Query: 390  LRQVRKECSSAETNE------QRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFS 551
            LR+VR+  S  E +E       + +RV AKD++ +GD+I+LP SV   S   T   + + 
Sbjct: 119  LRKVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMSVQVFS---TEKTRDYC 175

Query: 552  SEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVH 731
            ++E+  F+ SL L+KD AI+VINKPPG+PVQGG+G++RSLDELAA  L Y + EPPRLVH
Sbjct: 176  NKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVH 235

Query: 732  RLDRDSSGILVMGRTQLSTTVLHSVFREKTIGA---FNDVLGGKNILQKRYLALVIGSPR 902
            RLDRDSSGIL+MGRT  ST++LHSVFREKT  A    N V   K IL KRY ALVIGSPR
Sbjct: 236  RLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGSPR 295

Query: 903  RRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLT 1082
            R +G I+ PL K+V DDG+SE+I V D +  +P Q A+T Y+VI  S  GYTWLEL PLT
Sbjct: 296  RSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWLELCPLT 354

Query: 1083 GRKHQLRVHCAEVLRTPIVGDYKYGRQAHRK-------------LEQYLESASDLKLGDM 1223
            GRKHQLRVHCAEVL TPIVGDYKYG QAH+               +Q+L    D + G +
Sbjct: 355  GRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNFHKNQGKKQFLPFGLDFESGSI 414

Query: 1224 PSKADKXXXXXXXXXXXXXXEQFSLHLHCKEMILPDISVVLQHGNVADLDSARIGNIMLN 1403
               + +                  LHLHCK++ LPD+S  L H +  D D +R+  + L+
Sbjct: 415  AENSPR------------------LHLHCKQLTLPDVSFAL-HNDSLDRDCSRLECLELD 455

Query: 1404 APLPPHMQRSWDLLN 1448
            APLP +MQ+SWD++N
Sbjct: 456  APLPSYMQKSWDIIN 470


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  405 bits (1042), Expect = e-110
 Identities = 221/431 (51%), Positives = 285/431 (66%), Gaps = 23/431 (5%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLY---GRPE---ETSATTALKWILKCCPNLPRSLVQKLFR 389
            +W  LPP+T T +G  +G ++    G+ E    T+A TALKW+++CCP LPRSLVQKLFR
Sbjct: 59   RWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPRSLVQKLFR 118

Query: 390  LRQVRKECSSAETNEQRP-RRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEEDR 566
            LR+V ++ +    N     +RV AKD++ +GD+I+LP SV   S   T   + + ++E+ 
Sbjct: 119  LRKVPRQLNVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFS---TEKTRDYCNKEEE 175

Query: 567  KFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRD 746
             F+ SL L+KD AI+VINKPPG+PVQGG+G++RSLDELAA  L Y + EPPRLVHRLDRD
Sbjct: 176  TFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRD 235

Query: 747  SSGILVMGRTQLSTTVLHSVFREKTIGA---FNDVLGGKNILQKRYLALVIGSPRRRQGS 917
            SSGIL+MGRT  ST++LHSVFREKT  A    N V   K IL KRY ALVIGSPRR +G 
Sbjct: 236  SSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGSPRRSKGL 295

Query: 918  ISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQ 1097
            I+ PL K+V DDG+SE+I V D +  +P Q A+T Y+VI  S  GYTWLEL PLTGRKHQ
Sbjct: 296  ITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWLELCPLTGRKHQ 354

Query: 1098 LRVHCAEVLRTPIVGDYKYGRQAHRK-------------LEQYLESASDLKLGDMPSKAD 1238
            LRVHCAEVL TPIVGDYKYG QAH+               +Q+L    D + G +     
Sbjct: 355  LRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNFHKNQGKKQFLPFGLDFESGSIAENNP 414

Query: 1239 KXXXXXXXXXXXXXXEQFSLHLHCKEMILPDISVVLQHGNVADLDSARIGNIMLNAPLPP 1418
            +                  LHLHCK++ LPD+S  L H +  D D +R+  + L+APLP 
Sbjct: 415  R------------------LHLHCKQLTLPDVSFAL-HNDSLDRDCSRLECLELDAPLPS 455

Query: 1419 HMQRSWDLLNS 1451
            +MQ+SWD++NS
Sbjct: 456  YMQKSWDIINS 466


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 427

 Score =  398 bits (1023), Expect = e-108
 Identities = 214/409 (52%), Positives = 276/409 (67%), Gaps = 2/409 (0%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPEETSATTALKWILKCCPNLPRSLVQKLFRLRQVRK 407
            +WL LPP + ++       +L   P     TTALKW+++CCP+LPR+LV KLFRLRQVR 
Sbjct: 30   KWLTLPPVSASSSASVELNQLSSTP-----TTALKWVVRCCPHLPRALVHKLFRLRQVRI 84

Query: 408  ECSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEEDRKFVQSLE 587
              ++    +Q  +RV AKD +  GDRI LP+SV  +  PT     S  + +   F+++L 
Sbjct: 85   HPATV-IQQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPT----HSHLTPQQINFIRTLV 139

Query: 588  LYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVM 767
            +YKD AI+V+NKPPGMPVQGG+ I+RSLD +AA  L Y + +PPRLVHRLDRD SGILVM
Sbjct: 140  IYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVM 199

Query: 768  GRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRYLALVIGSPRRRQGSISVPLMKVVF 947
            GRT  STTVLHS+FREKT  A +D+   K ILQ+RY ALV+G PRR +G ++  L KVV 
Sbjct: 200  GRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVV 259

Query: 948  DDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVLR 1127
            D+G+S+RIT+ D S  +  QHA+T+YRVIASS  GYTWLEL+PLTGRKHQLRVHCAEVL 
Sbjct: 260  DNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLG 319

Query: 1128 TPIVGDYKYGRQAHRKLEQY-LESASDLKLGDMPSKADKXXXXXXXXXXXXXXEQFSLHL 1304
            TPIVGDYKYG QAHRK   + L +  D +  +     +K                  LHL
Sbjct: 320  TPIVGDYKYGWQAHRKWGHFDLPNVEDSR--EELLNEEKLPFGLNLNKGSISENHPRLHL 377

Query: 1305 HCKEMILPDISVVLQH-GNVADLDSARIGNIMLNAPLPPHMQRSWDLLN 1448
            HCK+M+LP+IS  LQ+  + +  D + +  + L A LPP+MQRSWD+ N
Sbjct: 378  HCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 426


>ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 429

 Score =  396 bits (1018), Expect = e-107
 Identities = 214/410 (52%), Positives = 275/410 (67%), Gaps = 3/410 (0%)
 Frame = +3

Query: 228  QWLILPPFTPTADGCSIGKKLYGRPEETSATTALKWILKCCPNLPRSLVQKLFRLRQVRK 407
            +WL LPP + ++       +L   P     TTALKW+++CCP+LPR+LV KLFRLRQVR 
Sbjct: 30   KWLTLPPVSASSSASVELNQLSSTP-----TTALKWVVRCCPHLPRALVHKLFRLRQVRI 84

Query: 408  ECSSAETNEQRPR-RVGAKDLMGIGDRIYLPKSVDERSHPTTANNQSFSSEEDRKFVQSL 584
              ++    +   R RV AKD +  GDRI LP+SV  +  PT     S  + +   F+++L
Sbjct: 85   HPATVIQQQTFKRVRVAAKDTLNTGDRILLPQSVKVKQTPT----HSHLTPQQINFIRTL 140

Query: 585  ELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILV 764
             +YKD AI+V+NKPPGMPVQGG+ I+RSLD +AA  L Y + +PPRLVHRLDRD SGILV
Sbjct: 141  VIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILV 200

Query: 765  MGRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRYLALVIGSPRRRQGSISVPLMKVV 944
            MGRT  STTVLHS+FREKT  A +D+   K ILQ+RY ALV+G PRR +G ++  L KVV
Sbjct: 201  MGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVV 260

Query: 945  FDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVL 1124
             D+G+S+RIT+ D S  +  QHA+T+YRVIASS  GYTWLEL+PLTGRKHQLRVHCAEVL
Sbjct: 261  VDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVL 320

Query: 1125 RTPIVGDYKYGRQAHRKLEQY-LESASDLKLGDMPSKADKXXXXXXXXXXXXXXEQFSLH 1301
             TPIVGDYKYG QAHRK   + L +  D +  +     +K                  LH
Sbjct: 321  GTPIVGDYKYGWQAHRKWGHFDLPNVEDSR--EELLNEEKLPFGLNLNKGSISENHPRLH 378

Query: 1302 LHCKEMILPDISVVLQH-GNVADLDSARIGNIMLNAPLPPHMQRSWDLLN 1448
            LHCK+M+LP+IS  LQ+  + +  D + +  + L A LPP+MQRSWD+ N
Sbjct: 379  LHCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 428