BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00015002
         (1597 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU22643.1| hypothetical protein MIMGU_mgv1a002284mg [Mimulus...   793   0.0  
ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synt...   717   0.0  
ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   717   0.0  
ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synt...   708   0.0  
ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Popu...   706   0.0  
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              702   0.0  
gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus no...   697   0.0  
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   697   0.0  
ref|XP_007030612.1| Pseudouridine synthase family protein isofor...   696   0.0  
ref|XP_007208186.1| hypothetical protein PRUPE_ppa020985mg [Prun...   692   0.0  
ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synt...   682   0.0  
ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synt...   679   0.0  
ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synt...   679   0.0  
ref|XP_007030611.1| Pseudouridine synthase family protein, putat...   673   0.0  
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   673   0.0  
ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citr...   673   0.0  
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   667   0.0  
ref|XP_006408145.1| hypothetical protein EUTSA_v10022286mg, part...   655   0.0  
ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata...   655   0.0  
ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Caps...   648   0.0  

>gb|EYU22643.1| hypothetical protein MIMGU_mgv1a002284mg [Mimulus guttatus]
          Length = 691

 Score =  793 bits (2049), Expect = 0.0
 Identities = 395/532 (74%), Positives = 451/532 (84%), Gaps = 2/532 (0%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCP-SEIAEEK 183
            MTS EESDVGILCYIS LPGFRGILKQRYSDFIVNEV +DGNVVHLT+L+ P SE A EK
Sbjct: 1    MTSAEESDVGILCYISPLPGFRGILKQRYSDFIVNEVDMDGNVVHLTSLEAPPSEAAGEK 60

Query: 184  KEKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHR 363
            KEK  D +++D++ EIESFR L GD D EKLK  IDQ+ SGV  N ES+VLSPSSDK+HR
Sbjct: 61   KEKVADQLEKDYASEIESFRTLVGDSDAEKLKFFIDQISSGVKTNDESIVLSPSSDKTHR 120

Query: 364  TAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXP-YDSR 540
            TA+HNFFKER+KFLVTDT+DGPDSSSKCIRVRL                       YDSR
Sbjct: 121  TAVHNFFKERLKFLVTDTVDGPDSSSKCIRVRLNSGINNNARGNNSRKRKDRGQQQYDSR 180

Query: 541  GSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTV 720
            G+D+WP+N GKFLRF+LYKENKDTQEALG+L KM+G +PRSFGFAGTKDKRSVSTQRVTV
Sbjct: 181  GTDSWPDNTGKFLRFYLYKENKDTQEALGILGKMIGVQPRSFGFAGTKDKRSVSTQRVTV 240

Query: 721  FKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAI 900
            FKQRAS+LAALN +L GIKVGNFC+V+E LVLG+LQGNRFTITLRS+ S+ EDII+A+A 
Sbjct: 241  FKQRASKLAALNDRLFGIKVGNFCYVDEELVLGKLQGNRFTITLRSVSSDVEDIIRASAT 300

Query: 901  ALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYY 1080
            ALG NGFINYFGLQRFGSSSIPTHLIGAALLRGEW+AAV+M+L+PREGEKD TR IREYY
Sbjct: 301  ALGNNGFINYFGLQRFGSSSIPTHLIGAALLRGEWKAAVSMILDPREGEKDVTRTIREYY 360

Query: 1081 KESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1260
            KESGDIEGT+RQLPR LVAER+IL CF++ PGNYLQALLAIPRTLRMM+VHSYQSYLWNH
Sbjct: 361  KESGDIEGTLRQLPRHLVAERSILYCFQKNPGNYLQALLAIPRTLRMMFVHSYQSYLWNH 420

Query: 1261 AASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCDLEDIPVTDL 1440
            AASMRV  YG HQVVLGDLVYC +++ EKE   S  EC D  G+DTH DC ++++ V DL
Sbjct: 421  AASMRVQKYGMHQVVLGDLVYCKDQEIEKETKFSNSECEDGNGNDTHDDCHVDELSVIDL 480

Query: 1441 SEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            SE +N  VKVIS+EDIAAG YTI+DI+LPLPGSR++YP N+IGKIYHD+A+K
Sbjct: 481  SEARNTVVKVISEEDIAAGTYTIDDIVLPLPGSRITYPLNDIGKIYHDIARK 532


>ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            tuberosum]
          Length = 685

 Score =  717 bits (1852), Expect = 0.0
 Identities = 359/530 (67%), Positives = 430/530 (81%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEKK 186
            M +++ESDVGI CYIS LPGFRGILKQRYSDFIVNEV LD NVVHLT L+ P E +E K 
Sbjct: 1    MKTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLTLLEAPKECSENKD 60

Query: 187  EKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 366
                D ++R +  EIESFR LAG+ D +KLK  ID++ SG   + ES+VLSPSSDKSHRT
Sbjct: 61   VNISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 367  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 546
            AIHNFFKER+KFLVTDT+DG +  SKC+RVRL                      YDSRGS
Sbjct: 121  AIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRSSRKRKDRDDKRYDSRGS 180

Query: 547  DNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVFK 726
            D+WP ++GKFLRFHL+KENKDTQEAL ++AKMLG + RSFGFAGTKDKR+VSTQRVTVFK
Sbjct: 181  DSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFK 240

Query: 727  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIAL 906
            Q+AS+LAALN++LIGIKVG+FCHV EGL+LGQL GNRFTITLR + +E+EDIIKA+A+AL
Sbjct: 241  QQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVAL 300

Query: 907  GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKE 1086
            GK+GFINYFGLQRFGSSS+PTHLIGAALLRGEW+AAV+++L+PREGEK+A   +REYYKE
Sbjct: 301  GKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNAISTVREYYKE 360

Query: 1087 SGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1266
            SGDI+GT+RQLPR LVAE+AILQC ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SGDIDGTLRQLPRYLVAEKAILQCLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1267 SMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCDLEDIPVTDLSE 1446
            SMRV  +GF QVVLGDLVY  EE + KE  + V EC D   ++     +L++I  TDL E
Sbjct: 421  SMRVQKHGFDQVVLGDLVYSKEEYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 1447 VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
             +N  VKVI++ED+ +G Y I+D++LPLPGSRV YPSN+IG++Y DLA+K
Sbjct: 479  ERNIPVKVINEEDLKSGTYAIDDVLLPLPGSRVIYPSNDIGEVYCDLAQK 528


>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  717 bits (1850), Expect = 0.0
 Identities = 357/530 (67%), Positives = 414/530 (78%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEKK 186
            M  +EESDVGI  YIS+LPGFRGILKQRY DFIVNEV  DGNVVHLT+LD P E  E+ +
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 187  EKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 366
             K  D  ++ ++ EIE FR L GD DVE LK LIDQV SG+ +    +VLS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 367  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 546
            A+HNFFKE +KFLVTDT+DGPD+SSKCIRVRL                     P+DSRGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 547  DNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVFK 726
            DNW E++GKFLRFHLYKENKDTQEA+GL+ KMLG +PRSFGFAGTKDKRSVSTQRVTVFK
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 727  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIAL 906
            Q A+RLAALN++LIGIKVG+FCHV EGLVLGQL GNRFTITLR +++++E+ IKA+A AL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 907  GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKE 1086
            G+ GFINYFGLQRFGS S+PTHLIGAALLRGEW+ AV+++L+PREGE+DA RK REYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGERDAIRKAREYYKE 360

Query: 1087 SGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1266
            S DIEGT+RQ PR LVAERAILQC ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1267 SMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCDLEDIPVTDLSE 1446
            SMRV NYG  QVVLGDLVYC  +  EK       E  DD   D       ++I  TDL E
Sbjct: 421  SMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 480

Query: 1447 VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
             +N  VK +  ED+  G YTI+D++LPLPGSR  YP+N+I ++YHD AKK
Sbjct: 481  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKK 530


>ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            lycopersicum]
          Length = 685

 Score =  708 bits (1827), Expect = 0.0
 Identities = 354/530 (66%), Positives = 427/530 (80%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEKK 186
            M +++ESDVGI CYIS LPGFRGILKQRYSDFIVNEV LD NVVHL +L+ P E +E K 
Sbjct: 1    MKTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLNSLEAPKECSENKD 60

Query: 187  EKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 366
                D ++R +  EIESFR LAG+ D +KLK  ID++ SG   + ES+VLSPSSDKSHRT
Sbjct: 61   VNISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 367  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 546
             IHNFFKER+KFLVTDT+DG +  SKC+RVRL                      YDSRGS
Sbjct: 121  EIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRYSRKRKDRNDKRYDSRGS 180

Query: 547  DNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVFK 726
            D+WP ++GKFLRFHL+KENKDTQEAL ++AKMLG + RSFGFAGTKDKR+VSTQRVTVFK
Sbjct: 181  DSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFK 240

Query: 727  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIAL 906
            Q+AS+LAALN++LIGIKVG+FCHV EGL+LGQL GNRFTITLR + +E+EDIIKA+A+AL
Sbjct: 241  QQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVAL 300

Query: 907  GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKE 1086
            GK+GFINYFGLQRFGSSS+PTHLIGAALLRGEW+AAV+++L+PREGEK+    +REYYKE
Sbjct: 301  GKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNTISTVREYYKE 360

Query: 1087 SGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1266
            SGDI+GT+RQLPR LVAE+AILQ  ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SGDIDGTLRQLPRYLVAEKAILQSLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1267 SMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCDLEDIPVTDLSE 1446
            SMRV  +GF QVVLGDLVY  E+ + KE  + V EC D   ++     +L++I  TDL E
Sbjct: 421  SMRVQKHGFDQVVLGDLVYSKEDYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 1447 VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
             +N  VKVI++ED+ +G YTI+D++LPL GSRV YPSN+IG++Y DLA+K
Sbjct: 479  ERNIPVKVINEEDLKSGTYTIDDVLLPLSGSRVIYPSNDIGEVYRDLAQK 528


>ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Populus trichocarpa]
            gi|550338143|gb|ERP60572.1| hypothetical protein
            POPTR_0005s05300g [Populus trichocarpa]
          Length = 752

 Score =  706 bits (1821), Expect = 0.0
 Identities = 354/544 (65%), Positives = 423/544 (77%), Gaps = 13/544 (2%)
 Frame = +1

Query: 4    SMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEK 183
            S  S+EESDVGILCYIS+LPGFRGILKQRY+DFIVNEV  DGNVVHLT L+ P ++ EE 
Sbjct: 51   STASMEESDVGILCYISQLPGFRGILKQRYADFIVNEVDTDGNVVHLTCLEPPPQMVEET 110

Query: 184  KEKTDDLVDRDFSQ------EIESFRVLAGDPDVEKLKKLIDQVVS--GVHNNGESVVLS 339
            KE    + D   S+      EIE FR LAGD D EKL+ LI QV S  G  ++   +VLS
Sbjct: 111  KECGAKVSDEKMSESKSYEAEIELFRSLAGDSDAEKLESLISQVDSCTGSEDSVPHIVLS 170

Query: 340  PSSDKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXX 519
            P SDK+HRTA+HNFFK+  KFLVTDT DGPD+SSKCIRVRL                   
Sbjct: 171  PDSDKTHRTAVHNFFKQNFKFLVTDTTDGPDASSKCIRVRLDSGGHKNNGRNSKKRKERG 230

Query: 520  XXPYDSRGSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSV 699
              P+DSRGS NWPE++GKFLRFHLYKENKDTQEALG++ KMLG + +SFGFAGTKDKR+V
Sbjct: 231  EKPFDSRGSSNWPEHLGKFLRFHLYKENKDTQEALGIIGKMLGIQSKSFGFAGTKDKRAV 290

Query: 700  STQRVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENED 879
            STQRVTVFKQ+ASRLAALN +LIGIKVG+FCHV EGL+LG+L GNRFT+TLR +I+++ED
Sbjct: 291  STQRVTVFKQQASRLAALNDRLIGIKVGDFCHVKEGLLLGRLLGNRFTVTLRGVIADSED 350

Query: 880  IIKAAAIALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGE---- 1047
             IKAAA +LG++GFINYFGLQRFG+ S+PTHLIGAALLRGEW+ AV+M+L+PREG+    
Sbjct: 351  TIKAAADSLGRHGFINYFGLQRFGTGSVPTHLIGAALLRGEWKTAVSMILDPREGDILLL 410

Query: 1048 -KDATRKIREYYKESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMM 1224
                 RK REYYKES DIEGT+RQLPR LVAERA+LQC ++CPG+YLQA+ AIPRTLRMM
Sbjct: 411  FPYVIRKAREYYKESNDIEGTLRQLPRHLVAERAVLQCLKKCPGDYLQAMKAIPRTLRMM 470

Query: 1225 YVHSYQSYLWNHAASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHI 1404
            YVH YQSYLWNHAAS RV  YGF QV+LGDLVYC  +  EKE +    EC DD  DDT+ 
Sbjct: 471  YVHGYQSYLWNHAASERVQKYGFDQVLLGDLVYCKGDDSEKETVGVNSECNDDNCDDTYD 530

Query: 1405 DCDLEDIPVTDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHD 1584
               L++   TDL E +N  VKV++ ED++ G YT++D++LP+PGSRV +P+NEI K+YHD
Sbjct: 531  CSHLDETSGTDLLERKNTLVKVVTVEDMSTGNYTVDDVVLPMPGSRVIFPTNEIAKVYHD 590

Query: 1585 LAKK 1596
            LAKK
Sbjct: 591  LAKK 594


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  702 bits (1812), Expect = 0.0
 Identities = 353/530 (66%), Positives = 410/530 (77%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEKK 186
            M  +EESDVGI  YIS+LPGFRGILKQRY DFIVNEV  DGNVVHLT+LD P E  E+ +
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 187  EKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 366
             K  D  ++ ++ EIE FR L GD DVE LK LIDQV SG+ +    +VLS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 367  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 546
            A+HNFFKE +KFLVTDT+DGPD+SSKCIRVRL                     P+DSRGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 547  DNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVFK 726
            DNW E++GKFLRFHLYKENKDTQEA+GL+ KMLG +PRSFGFAGTKDKRSVSTQRVTVFK
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 727  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIAL 906
            Q A+RLAALN++LIGIKVG+FCHV EGLVLGQL GNRFTITLR +++++E+ IKA+A AL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 907  GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKE 1086
            G+ GFINYFGLQRFGS S+PTHLIGAALLRGEW+ AV+++L+PREG+     K REYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGD-ILLLKAREYYKE 359

Query: 1087 SGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1266
            S DIEGT+RQ PR LVAERAILQC ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 360  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 419

Query: 1267 SMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCDLEDIPVTDLSE 1446
            SMRV NYG  QVVLGDLVYC  +  EK       E  DD   D       ++I  TDL E
Sbjct: 420  SMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 479

Query: 1447 VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
             +N  VK +  ED+  G YTI+D++LPLPGSR  YP+N+I ++YHD AKK
Sbjct: 480  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKK 529


>gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus notabilis]
          Length = 784

 Score =  697 bits (1798), Expect = 0.0
 Identities = 344/533 (64%), Positives = 416/533 (78%), Gaps = 2/533 (0%)
 Frame = +1

Query: 4    SMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEK 183
            +M +++ESDVGI CYIS LPGFRGILKQRYSDFIVNEV  DGNVVHLT+LD P E  EE 
Sbjct: 59   AMKTLDESDVGIFCYISNLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPETREET 118

Query: 184  KEKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHR 363
            + +T D   + ++ EIESFR LAGD D E L+ LI+Q+ SG       +VLSPSSDKSHR
Sbjct: 119  RTETIDAGTKSYTSEIESFRCLAGDSDAESLEALINQINSGGGEEVSPIVLSPSSDKSHR 178

Query: 364  TAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRG 543
            T IHNFFK+  KFLVTDT+DGPD+SSKCIRVRL                     P+D RG
Sbjct: 179  TEIHNFFKKNFKFLVTDTVDGPDASSKCIRVRLNSGRHNNHGRNSKKRKERGDKPFDRRG 238

Query: 544  SDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVF 723
            SD+WPE++GKFLRFHLYKENKD+QEALGL+ KMLG +PRSFGFAGTKDKRSVSTQRVTVF
Sbjct: 239  SDDWPEHVGKFLRFHLYKENKDSQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVF 298

Query: 724  KQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIA 903
            KQRASRLAALN +LIGI+VG+FC+V E LVLGQL GNRFT+TLR +++++E+ IKA+A A
Sbjct: 299  KQRASRLAALNDRLIGIQVGDFCYVKEELVLGQLSGNRFTVTLRGVVADSEETIKASASA 358

Query: 904  LGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGE--KDATRKIREY 1077
            LG+ GFINYFGLQRFGS S+PT+LIGA L RGEW+ AV+M+L+PREG+   D   K REY
Sbjct: 359  LGRRGFINYFGLQRFGSGSVPTYLIGAMLFRGEWKDAVHMILDPREGDILLDVITKAREY 418

Query: 1078 YKESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWN 1257
            YKE+ DI+GT+RQLPR LVAE AILQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWN
Sbjct: 419  YKETNDIDGTLRQLPRHLVAENAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWN 478

Query: 1258 HAASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCDLEDIPVTD 1437
            HAAS RV  YG  QVV+GDLV+C E   EK   T+  +C D++ +      D++++   +
Sbjct: 479  HAASTRVQKYGTDQVVVGDLVFCKEHNIEKVKGTASADCKDEDSNAIFGSHDIDEVSGAE 538

Query: 1438 LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            L E +N  VKV++ EDI AG + I+D++LPLPGSRV  P+N+I ++YHDLAKK
Sbjct: 539  LPEERNNPVKVVAAEDILAGNFAIDDVVLPLPGSRVILPTNDIAQVYHDLAKK 591


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  697 bits (1798), Expect = 0.0
 Identities = 352/545 (64%), Positives = 434/545 (79%), Gaps = 15/545 (2%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEI---AE 177
            MT++EESDVGI CYISK+PGFRGILKQRYSDFIVNEV  +GNVVHLT+L  P EI   AE
Sbjct: 49   MTTIEESDVGISCYISKVPGFRGILKQRYSDFIVNEVDNNGNVVHLTSLHVPREIVEVAE 108

Query: 178  EKKEKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHN-NGESVVLSPSSDK 354
            E++E+  + V ++++ EIESFR LAGD D ++L+  I+QV+S  +  N   ++LSP SDK
Sbjct: 109  EREEEITNQVGKNYAAEIESFRELAGDADTQRLEAFINQVISEDNCINISPILLSPDSDK 168

Query: 355  SHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXX-PY 531
            +HRTA HNFFKE++KFLVTDT+DGPD+SSKCIRVRL                      P+
Sbjct: 169  AHRTATHNFFKEKLKFLVTDTVDGPDASSKCIRVRLNSRGNINEGNRNSKKRKDRNDKPF 228

Query: 532  DSRGSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQR 711
            DSRGSD+WPE++GKFLRFHLYKENKDTQEA+GL+ KMLG +PRSFGFAGTKDKRSVSTQR
Sbjct: 229  DSRGSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQR 288

Query: 712  VTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKA 891
            VTVFKQ ASRLAALN +LIGIKVG+FC+VNEGL+LGQL GNRFT+TLR +++++ED IK 
Sbjct: 289  VTVFKQHASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVTLRGVVADSEDTIKG 348

Query: 892  AAIALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDA----- 1056
            +A +LG++GFINYFGLQRFGS S+PTHLIGAALLRGEW+ AV+M+L+PREG+        
Sbjct: 349  SADSLGRHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMILDPREGDILLLVICF 408

Query: 1057 --TRKIREYYKESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYV 1230
               R  REYYKES DI+GT+RQLPR L AERA+LQC ++CPGNYLQAL AIPRTLRMMYV
Sbjct: 409  MWMRMAREYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQALKAIPRTLRMMYV 468

Query: 1231 HSYQSYLWNHAASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDC 1410
            HSYQSYLWNHAASMRV  YG  QVV+GDLVYC  +  E+E+ ++   C DD+ +D +   
Sbjct: 469  HSYQSYLWNHAASMRVQKYGTDQVVVGDLVYCKGDDTEREIGSANSACEDDDCEDMYGCS 528

Query: 1411 DLEDIPVTDLSEVQNASVKV---ISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYH 1581
            +L++   TDLSE ++  VKV   ++ ED++ G YTI D+ILP+PGSRVSYP+N+I K+YH
Sbjct: 529  NLDETSGTDLSERKDTLVKVEQAVNAEDLSTGNYTINDVILPMPGSRVSYPTNDIAKVYH 588

Query: 1582 DLAKK 1596
            DLA+K
Sbjct: 589  DLAEK 593


>ref|XP_007030612.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
            gi|508719217|gb|EOY11114.1| Pseudouridine synthase family
            protein isoform 2 [Theobroma cacao]
          Length = 732

 Score =  696 bits (1797), Expect = 0.0
 Identities = 346/530 (65%), Positives = 416/530 (78%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEKK 186
            MT++ ESDVGILC+IS LPGFRGILKQRYSDFIVNEV  +GNVVHLT+LD P E  +E +
Sbjct: 43   MTTITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEAVQEGE 102

Query: 187  EKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 366
             KT D +++ ++ EI  FR LAGD D ++L+  I+Q+ SG   +   +VLSP SDKSHRT
Sbjct: 103  TKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVLSPDSDKSHRT 162

Query: 367  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 546
            A+HNFFKE ++FLVTDT+DGPDSSSKCIRVRL                     PYDSRGS
Sbjct: 163  AMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRKERGDK-PYDSRGS 221

Query: 547  DNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVFK 726
             +WPE++GKFLRFHLYKENKDTQEALGL+ KMLG +PRSFGFAGTKDKRSVSTQRVTVFK
Sbjct: 222  SHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 281

Query: 727  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIAL 906
            Q ASRLAALN++LIGIKVG+FC+V +  +LGQL GNRFTI LR I++++E+ IKA+  +L
Sbjct: 282  QHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADSEETIKASVESL 341

Query: 907  GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKE 1086
            G++GFINYFGLQRFGS SIPTH IGA LLRGEWQAA + +L+PREGE+D   K REYYKE
Sbjct: 342  GRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGERDFVSKAREYYKE 401

Query: 1087 SGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1266
            +GDIEGT+RQLPR LVAERA+LQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 402  TGDIEGTLRQLPRHLVAERAMLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 461

Query: 1267 SMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCDLEDIPVTDLSE 1446
            SMRV  YG ++VVLGDLVYC     EK  +    E  D+  +D +    L++I  TDL E
Sbjct: 462  SMRVEKYGSNEVVLGDLVYCKGNDAEKVKVVP-SEHEDNNFEDAYDCSQLDEISGTDLPE 520

Query: 1447 VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
             +N  VK I+  DI+ G YTIED++LP+PGSR+ YP N+I  +YHD+AKK
Sbjct: 521  GKNNLVKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHDMAKK 570


>ref|XP_007208186.1| hypothetical protein PRUPE_ppa020985mg [Prunus persica]
            gi|462403828|gb|EMJ09385.1| hypothetical protein
            PRUPE_ppa020985mg [Prunus persica]
          Length = 691

 Score =  692 bits (1785), Expect = 0.0
 Identities = 344/534 (64%), Positives = 419/534 (78%), Gaps = 4/534 (0%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEKK 186
            M + EE DVGI CYIS+LPGFRGILKQRYSDF+VNEV  + NVVHLT LD P+E  +E +
Sbjct: 1    MKTTEEPDVGIFCYISQLPGFRGILKQRYSDFMVNEVDTEENVVHLTNLDAPAETVKEIE 60

Query: 187  EKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 366
             KT D   +D++ EIESFR L    D E+L+ +I+Q+ SG  ++   +VLSP  DKSHRT
Sbjct: 61   TKTHDATSKDYTTEIESFRSLVDPDDAERLEAIINQINSGSEDSILPIVLSPDYDKSHRT 120

Query: 367  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 546
            A+HNFFKE  KFLVTDT+DGPD+SSKCIRVR+                     P+DSRGS
Sbjct: 121  AVHNFFKENFKFLVTDTVDGPDASSKCIRVRINSGGQNSRGRNSRKRKERGDKPFDSRGS 180

Query: 547  DNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVFK 726
            D+W EN+GKFLRFHLYKENKDTQEALG++AKMLG +PRSFGFAGTKDKR+V+TQRVTVFK
Sbjct: 181  DDWSENVGKFLRFHLYKENKDTQEALGIIAKMLGIQPRSFGFAGTKDKRAVTTQRVTVFK 240

Query: 727  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIAL 906
            Q ASRLAALN +LIGIKVG+FC+V EGLVLGQL GNRFTITLR +++++ED IKA+ IAL
Sbjct: 241  QLASRLAALNDRLIGIKVGDFCYVKEGLVLGQLLGNRFTITLRGVVADSEDTIKASVIAL 300

Query: 907  GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGE--KDATRKIREYY 1080
            GK GFINYFGLQRFGS S+PTHLIGA LLRGEW++ V++ L+PREG+         REYY
Sbjct: 301  GKQGFINYFGLQRFGSGSVPTHLIGATLLRGEWKSTVSLFLDPREGDILLMLLGIAREYY 360

Query: 1081 KESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1260
            KE+ DIEGT+RQLPR LV+E+AILQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWNH
Sbjct: 361  KETNDIEGTLRQLPRHLVSEKAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNH 420

Query: 1261 AASMRVTNYGFHQVVLGDLVYC--NEEQREKELITSVLECGDDEGDDTHIDCDLEDIPVT 1434
            AASMRV  YG  +VVLGDLVYC  NE ++  E+++S  +C D+ G+DT    DL+DI  T
Sbjct: 421  AASMRVQKYGTDRVVLGDLVYCKGNETEKVSEVVSS--KCVDENGNDTLDPIDLDDISGT 478

Query: 1435 DLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            +L E +   VK ++ EDI +G YTI+D++LP+PGSRV +P N+I  ++HDLAKK
Sbjct: 479  NLPEERLNLVKAVTAEDILSGNYTIDDVVLPMPGSRVIFPENDIAHVFHDLAKK 532


>ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Citrus sinensis]
          Length = 739

 Score =  682 bits (1760), Expect = 0.0
 Identities = 340/535 (63%), Positives = 419/535 (78%), Gaps = 4/535 (0%)
 Frame = +1

Query: 4    SMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIA--E 177
            +M +V+ESD GILC+IS LPGFRGILKQRY DFIVNEV  D  VVHLT+LD P E A  E
Sbjct: 44   TMKTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVE 103

Query: 178  EKKEKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNG-ESVVLSPSSDK 354
              + K  D ++R ++ EIESFR LAGD D + L+ LI+QV SG + +    +VLS +SDK
Sbjct: 104  HNETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDK 163

Query: 355  SHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXX-PY 531
            SHRTAIHNFFK+  KFLVTDT+DGPD+SSKCIRVRL                      P+
Sbjct: 164  SHRTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPF 223

Query: 532  DSRGSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQR 711
            DSRGS+NWPE +GKFLRFHLYKENKDTQEALGL++KMLG  PRSFGFAGTKDKRSVSTQR
Sbjct: 224  DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 283

Query: 712  VTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKA 891
            VTVFKQRAS+LAALN++LIGI++G+FC+V EGL+LGQL GNRFTITLR ++ ++ED+IKA
Sbjct: 284  VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 343

Query: 892  AAIALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIR 1071
            +A +LG+NGFINYFGLQRFGS S+PTHL+GA LLRGEW++AV M+L+PREGE++   K R
Sbjct: 344  SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAR 403

Query: 1072 EYYKESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYL 1251
            EYYKE+ DI+GT+R+LPR LVAERAILQC ++CPGNYLQAL AIPRTLRMMYVHSYQS+L
Sbjct: 404  EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFL 463

Query: 1252 WNHAASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCDLEDIPV 1431
            WNHAAS RV  +G   VV+GDLV+C  +  EKEL     E   +  +D      L+++P 
Sbjct: 464  WNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPE 523

Query: 1432 TDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            TD  + ++  VK ++ EDI +GKYTI+D++LPLPGSRV YP N++ ++YH LA+K
Sbjct: 524  TDHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 578


>ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 693

 Score =  679 bits (1753), Expect = 0.0
 Identities = 335/533 (62%), Positives = 410/533 (76%), Gaps = 5/533 (0%)
 Frame = +1

Query: 13   SVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEKKEK 192
            + +ES+VGI CYIS LPGFRGILKQRYSDF+VNEV ++GNVVHLT L+ P E+ +E   K
Sbjct: 2    TTQESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAK 61

Query: 193  TDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRTAI 372
            T+D   +D+S EIE FR LA   DVE+L+  I +V SG  +    +VLSP  DK HRTA+
Sbjct: 62   TEDAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAV 121

Query: 373  HNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGSDN 552
            HNFFKE +KFLVTD +DGPD+SSKCIRVRL                     P+DSRG D+
Sbjct: 122  HNFFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDD 181

Query: 553  WPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVFKQR 732
            W E++GKFLRFHL+KENKDTQEALG++ KMLG +PR+FGFAGTKDKR+V+ QRVTVFKQ 
Sbjct: 182  WSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQF 241

Query: 733  ASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIALGK 912
            ASRLAALN +LIGIKVG+FC+V EGL LGQL GNRFTITLR +++++EDII+A+A ALGK
Sbjct: 242  ASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGK 301

Query: 913  NGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKESG 1092
             GF+NYFGLQRFGS SIPTHLIGA+LLRGEW++ V+M+LEPREGE+D   + R+YYKES 
Sbjct: 302  QGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESN 361

Query: 1093 DIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASM 1272
            DI+GT+R+LPR LVAERA+LQC ++CPGNY QAL A+PRTLRMMYVHSYQSYLWNHAASM
Sbjct: 362  DIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASM 421

Query: 1273 RVTNYGFHQVVLGDLVYCNEEQREKELITSVLEC-----GDDEGDDTHIDCDLEDIPVTD 1437
            RV  YG  +VV+GDLVYC   + EK       EC      D+  DDT     L+DI  T+
Sbjct: 422  RVQKYGTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETN 481

Query: 1438 LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            + E + + VK ++ EDI  G YTI+DI+LPLPGSRV +P N+I  ++HDLAKK
Sbjct: 482  VPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKK 534


>ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 701

 Score =  679 bits (1753), Expect = 0.0
 Identities = 335/533 (62%), Positives = 410/533 (76%), Gaps = 5/533 (0%)
 Frame = +1

Query: 13   SVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEKKEK 192
            + +ES+VGI CYIS LPGFRGILKQRYSDF+VNEV ++GNVVHLT L+ P E+ +E   K
Sbjct: 2    TTQESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAK 61

Query: 193  TDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRTAI 372
            T+D   +D+S EIE FR LA   DVE+L+  I +V SG  +    +VLSP  DK HRTA+
Sbjct: 62   TEDAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAV 121

Query: 373  HNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGSDN 552
            HNFFKE +KFLVTD +DGPD+SSKCIRVRL                     P+DSRG D+
Sbjct: 122  HNFFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDD 181

Query: 553  WPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVFKQR 732
            W E++GKFLRFHL+KENKDTQEALG++ KMLG +PR+FGFAGTKDKR+V+ QRVTVFKQ 
Sbjct: 182  WSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQF 241

Query: 733  ASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIALGK 912
            ASRLAALN +LIGIKVG+FC+V EGL LGQL GNRFTITLR +++++EDII+A+A ALGK
Sbjct: 242  ASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGK 301

Query: 913  NGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKESG 1092
             GF+NYFGLQRFGS SIPTHLIGA+LLRGEW++ V+M+LEPREGE+D   + R+YYKES 
Sbjct: 302  QGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESN 361

Query: 1093 DIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASM 1272
            DI+GT+R+LPR LVAERA+LQC ++CPGNY QAL A+PRTLRMMYVHSYQSYLWNHAASM
Sbjct: 362  DIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASM 421

Query: 1273 RVTNYGFHQVVLGDLVYCNEEQREKELITSVLEC-----GDDEGDDTHIDCDLEDIPVTD 1437
            RV  YG  +VV+GDLVYC   + EK       EC      D+  DDT     L+DI  T+
Sbjct: 422  RVQKYGTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETN 481

Query: 1438 LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            + E + + VK ++ EDI  G YTI+DI+LPLPGSRV +P N+I  ++HDLAKK
Sbjct: 482  VPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKK 534


>ref|XP_007030611.1| Pseudouridine synthase family protein, putative isoform 1 [Theobroma
            cacao] gi|508719216|gb|EOY11113.1| Pseudouridine synthase
            family protein, putative isoform 1 [Theobroma cacao]
          Length = 763

 Score =  673 bits (1737), Expect = 0.0
 Identities = 344/561 (61%), Positives = 418/561 (74%), Gaps = 31/561 (5%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEI----- 171
            MT++ ESDVGILC+IS LPGFRGILKQRYSDFIVNEV  +GNVVHLT+LD P E+     
Sbjct: 43   MTTITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEVMIDVF 102

Query: 172  --------AEEKKEKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGES 327
                     +E + KT D +++ ++ EI  FR LAGD D ++L+  I+Q+ SG   +   
Sbjct: 103  SLNKFTQAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICP 162

Query: 328  VVLSPSSDKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXX 507
            +VLSP SDKSHRTA+HNFFKE ++FLVTDT+DGPDSSSKCIRVRL               
Sbjct: 163  IVLSPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRK 222

Query: 508  XXXXXXPYDSRGSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKD 687
                  PYDSRGS +WPE++GKFLRFHLYKENKDTQEALGL+ KMLG +PRSFGFAGTKD
Sbjct: 223  ERGDK-PYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKD 281

Query: 688  KRSVSTQRVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIS 867
            KRSVSTQRVTVFKQ ASRLAALN++LIGIKVG+FC+V +  +LGQL GNRFTI LR I++
Sbjct: 282  KRSVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVA 341

Query: 868  ENEDIIKAAAIALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGE 1047
            ++E+ IKA+  +LG++GFINYFGLQRFGS SIPTH IGA LLRGEWQAA + +L+PREG+
Sbjct: 342  DSEETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGD 401

Query: 1048 KDA------------------TRKIREYYKESGDIEGTIRQLPRQLVAERAILQCFRQCP 1173
              +                  T++ REYYKE+GDIEGT+RQLPR LVAERA+LQC ++CP
Sbjct: 402  ILSLTFFFPFLLGKALFRCLTTQRAREYYKETGDIEGTLRQLPRHLVAERAMLQCLKKCP 461

Query: 1174 GNYLQALLAIPRTLRMMYVHSYQSYLWNHAASMRVTNYGFHQVVLGDLVYCNEEQREKEL 1353
            GNYLQAL AIPRTLRMMYVHSYQSYLWNHAASMRV  YG ++VVLGDLVYC     EK  
Sbjct: 462  GNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGSNEVVLGDLVYCKGNDAEKVK 521

Query: 1354 ITSVLECGDDEGDDTHIDCDLEDIPVTDLSEVQNASVKVISKEDIAAGKYTIEDIILPLP 1533
            +    E  D+  +D +    L++I  TDL E +N  VK I+  DI+ G YTIED++LP+P
Sbjct: 522  VVP-SEHEDNNFEDAYDCSQLDEISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLPMP 580

Query: 1534 GSRVSYPSNEIGKIYHDLAKK 1596
            GSR+ YP N+I  +YHD+AKK
Sbjct: 581  GSRIIYPVNDIANVYHDMAKK 601


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
            gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820
            [Arabidopsis thaliana] gi|61742699|gb|AAX55170.1|
            hypothetical protein At3g04820 [Arabidopsis thaliana]
            gi|332640619|gb|AEE74140.1| pseudouridine synthase
            [Arabidopsis thaliana]
          Length = 715

 Score =  673 bits (1737), Expect = 0.0
 Identities = 339/533 (63%), Positives = 419/533 (78%), Gaps = 3/533 (0%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIA--EE 180
            M +V+E+DVGI C+IS+LPGFRGILKQRY+DFIVNEV +DGNVVHLT+LD P E+A  EE
Sbjct: 37   MKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDLPPEMAVKEE 96

Query: 181  KKEKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSH 360
             K K+ D V ++++  +ESF+ ++   D E+L+ LI+QV SG       VVL PSSDKS 
Sbjct: 97   DKAKSCDNVPQNYTSAVESFKSISSVTDAERLEILINQVTSGTDGEVLPVVLDPSSDKSK 156

Query: 361  RTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSR 540
            RTAIHNF KE  KFLVTDT+DGPDS+SKCIRVR+                     P+DSR
Sbjct: 157  RTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRKERGDKPFDSR 216

Query: 541  GSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTV 720
            GS++WPE++GKFLRFHLYKENKDTQEALGL+ KMLG +P+SFGF+GTKDKRSVSTQRVTV
Sbjct: 217  GSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTV 276

Query: 721  FKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAI 900
            FKQ+AS+LAALN++L GIKVG+FC+V EGL+LGQL GNRFTITLR +++++E+ IK +A 
Sbjct: 277  FKQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETIKQSAE 336

Query: 901  ALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYY 1080
            +LGK+GFINYFGLQRFGS S+PTH +GAALL+GEW+ AV+M+L+PRE E+      REYY
Sbjct: 337  SLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDAVDMILDPRETERHVVNDAREYY 396

Query: 1081 KESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1260
            KE+GDI+GT+RQLPR LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYLWN+
Sbjct: 397  KETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNN 456

Query: 1261 AASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCD-LEDIPVTD 1437
            AAS+RV NYG  QVVLGDLV   +    K ++ S L    +E  +  +DCD ++D  V D
Sbjct: 457  AASLRVKNYGTSQVVLGDLV-STKVDAAKRMVDS-LTSEHNESSEEALDCDQVDDTAVVD 514

Query: 1438 LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            L   ++  VKV+S ED+ AG Y+  DI+LPLPGSRV YPSN+I +IYHDLAKK
Sbjct: 515  LPAERSDLVKVVSIEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKK 567


>ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citrus clementina]
            gi|557535111|gb|ESR46229.1| hypothetical protein
            CICLE_v10003382mg [Citrus clementina]
          Length = 697

 Score =  673 bits (1736), Expect = 0.0
 Identities = 339/534 (63%), Positives = 416/534 (77%), Gaps = 4/534 (0%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIA--EE 180
            M +V+ESD GILC+IS LPGFRGILKQRY DFIVNEV  D  VVHLT+LD P E A  E 
Sbjct: 1    MKTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEH 60

Query: 181  KKEKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNG-ESVVLSPSSDKS 357
             + K  D ++R ++ EIESFR LAGD D + L+ LI+QV SG + +    +VLS +SDKS
Sbjct: 61   NETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKS 120

Query: 358  HRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXX-PYD 534
            HRTAIHNFFK+  KFLVTDT+DGPD+SSKCIRVRL                      P+D
Sbjct: 121  HRTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFD 180

Query: 535  SRGSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRV 714
            SRGS+NWPE +GKFLRFHLYKENKDTQEALGL++KMLG  PRSFGFAGTKDKRSVSTQRV
Sbjct: 181  SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 240

Query: 715  TVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAA 894
            TVFKQRAS+LAALN++LIGI++G+FC+V EGL+LGQL GNRFTITLR ++ ++ED+IKA+
Sbjct: 241  TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 300

Query: 895  AIALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIRE 1074
            A +LG+NGFINYFGLQRFGS S+PTHL+GA LLRGEW++AV M+L+PREG+     K RE
Sbjct: 301  ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGD-ILLFKARE 359

Query: 1075 YYKESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLW 1254
            YYKE+ DI+GT+R+LPR LVAERAILQC ++CPGNYLQAL AIPRTLRMMYVHSYQS+LW
Sbjct: 360  YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 419

Query: 1255 NHAASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCDLEDIPVT 1434
            NHAAS RV  +G   VV+GDLV+C  +  EKEL     E   +  +D      L+++P T
Sbjct: 420  NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 479

Query: 1435 DLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            D  + ++  VK ++ EDI +GKYTI+D++LPLPGSRV YP N++ ++YH LA+K
Sbjct: 480  DHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 533


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  667 bits (1721), Expect = 0.0
 Identities = 334/531 (62%), Positives = 409/531 (77%), Gaps = 3/531 (0%)
 Frame = +1

Query: 13   SVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSE-IAEEKKE 189
            SV ESDVGIL YIS LPGFRGILKQRYSDFIVNEV  DGNVVHLT+LD P E I  E   
Sbjct: 42   SVGESDVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEVIVSESGP 101

Query: 190  KTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRTA 369
                   + ++ EIE FR LAGD D E L+  + Q+ SGV+++   +V SP +DK+HRTA
Sbjct: 102  TIVHSTSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSPDTDKTHRTA 161

Query: 370  IHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGSD 549
            +HNFFK + KFLVTDT+DGPDSSSKC+RVR+                     P+DSRGSD
Sbjct: 162  VHNFFK-KFKFLVTDTIDGPDSSSKCVRVRVDSGAQNNRGRFSKKRKERGDKPFDSRGSD 220

Query: 550  NWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTVFKQ 729
            NWPE++GKFLRFHLYKENKDTQEALGL+ KMLG + RSFGFAGTKDKRS+STQRVTVFKQ
Sbjct: 221  NWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRSISTQRVTVFKQ 280

Query: 730  RASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAIALG 909
             ASR+AALN +LIGIK+GNF ++ EGL+LGQL GNRFTITLR +++ +ED+IKA+A ALG
Sbjct: 281  HASRIAALNDRLIGIKLGNFSYIQEGLLLGQLLGNRFTITLRGVVANSEDVIKASAEALG 340

Query: 910  KNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKES 1089
            ++GFINYFGLQRFGS S+PTHL+GA+LLRGEW+ AVNM+L+PREG+     + R+YYKES
Sbjct: 341  RHGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGDILLLMRARDYYKES 400

Query: 1090 GDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAAS 1269
             DI+GT++QLPR LVAERAILQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWNHAAS
Sbjct: 401  DDIDGTLKQLPRYLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAAS 460

Query: 1270 MRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDE-GDDTHID-CDLEDIPVTDLS 1443
            MRV  YG  +VV+GDLVYC E   E   + +  E  D++ GD    D C LE++    L 
Sbjct: 461  MRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEVCKLGLP 520

Query: 1444 EVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
              ++  VK ++  D+ +G +TI+D++LPLPGSRV YP+N+I ++Y+DLA K
Sbjct: 521  TERHKLVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTNDIAEVYNDLATK 571


>ref|XP_006408145.1| hypothetical protein EUTSA_v10022286mg, partial [Eutrema salsugineum]
            gi|557109291|gb|ESQ49598.1| hypothetical protein
            EUTSA_v10022286mg, partial [Eutrema salsugineum]
          Length = 692

 Score =  655 bits (1690), Expect = 0.0
 Identities = 331/534 (61%), Positives = 414/534 (77%), Gaps = 3/534 (0%)
 Frame = +1

Query: 4    SMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIAEEK 183
            S  +V+ESDVGI C+IS+LPGFRGILKQRY+DFIVNEV +DGNVVHLT+LD   E+ E++
Sbjct: 38   SKKTVDESDVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDVSPEMDEKE 97

Query: 184  KEKT--DDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKS 357
            +EKT   D V + ++  IESFR ++   D E+L+ LI+QV S   +    VV  PSSDKS
Sbjct: 98   EEKTKSSDDVPQSYASAIESFRSISSVTDAERLETLINQVTSVTDDEISPVVFDPSSDKS 157

Query: 358  HRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDS 537
             RTAIHNF KE  KFLVTDT+DGPD +SKCIRVR+                     P+DS
Sbjct: 158  KRTAIHNFVKENFKFLVTDTVDGPDPTSKCIRVRVNSADHNSRGKRSKKRKERGDKPFDS 217

Query: 538  RGSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVT 717
            RGS++WPE++GKF++FHLYKENKDTQEALGL+ KMLG +P+SFGF+GTKDKRSVS+QRVT
Sbjct: 218  RGSEHWPEHLGKFVKFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSSQRVT 277

Query: 718  VFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAA 897
            VFKQ+AS+LAALN++L GIKVG+FCHV EGL+LGQL GNRFTITLR +++++E+ IK +A
Sbjct: 278  VFKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSA 337

Query: 898  IALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREY 1077
             +LGK+GFINYFGLQRFGS S+PTH +GAA+L+GEW+ AV+M+L+PRE       + REY
Sbjct: 338  ESLGKDGFINYFGLQRFGSGSVPTHHVGAAVLKGEWKEAVDMILDPRE-----INEAREY 392

Query: 1078 YKESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWN 1257
            YKE+GDI+GT+RQLPR LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYLWN
Sbjct: 393  YKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWN 452

Query: 1258 HAASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCD-LEDIPVT 1434
            +AAS+RV  YG +QVVLGDLV    +  ++  I   L     E ++  +DCD L+D  V 
Sbjct: 453  NAASLRVQKYGTNQVVLGDLVSTKVDDAKR--IVGSLTSEHKENNEEALDCDQLDDTAVV 510

Query: 1435 DLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            DLS  ++  VKV+  ED+ AG Y+  DI+LPLPGSRV YPSN+I +IYH+LAKK
Sbjct: 511  DLSGERSDLVKVVDIEDMEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHNLAKK 564


>ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
            gi|297330312|gb|EFH60731.1| pseudouridylate synthase
            [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  655 bits (1689), Expect = 0.0
 Identities = 337/534 (63%), Positives = 409/534 (76%), Gaps = 4/534 (0%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQR-YSDFIVNEVGLDGNVVHLTTLDCPSE--IAE 177
            MT+V+E+DVGI C+IS+LPGFRGILKQR Y+DFIVNEV +DGNVVHLT+LD P E  + E
Sbjct: 37   MTTVDEADVGISCFISQLPGFRGILKQRSYADFIVNEVDIDGNVVHLTSLDLPPEMDVKE 96

Query: 178  EKKEKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKS 357
            E K KT D V ++++  IESFR ++   D E+L+ LI+QV SG  +    VVL PSSDKS
Sbjct: 97   EDKTKTSDNVPQNYTSAIESFRSISSVTDAERLETLINQVTSGTDDEISPVVLDPSSDKS 156

Query: 358  HRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDS 537
             RTAIHNF KE  KFLVTDT+DGPDS+SKCIRVR+                     P+DS
Sbjct: 157  KRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPFDS 216

Query: 538  RGSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVT 717
            RGS++WPE++GKFLRFHLYKENKDTQEALGL+ KMLG +P+SFGF+GTKDKRSVSTQRVT
Sbjct: 217  RGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVT 276

Query: 718  VFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAA 897
            VFKQ+AS+LAALN++L GIKVG+FCHV EGL+LGQL GNRFTITLR +++++E+ IK +A
Sbjct: 277  VFKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSA 336

Query: 898  IALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREY 1077
             +LGK+GFINYFGLQRFGS S+PTH +GAALL+GEW+ A                  REY
Sbjct: 337  ESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ECSNAWHVVNDAREY 390

Query: 1078 YKESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWN 1257
            YKE+GDI+GT+RQLPR LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYLWN
Sbjct: 391  YKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWN 450

Query: 1258 HAASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCD-LEDIPVT 1434
            +AAS+RVT YG  QVVLGDLV   +   EK ++ S L    +E  +  +DCD ++D  V 
Sbjct: 451  NAASLRVTKYGTSQVVLGDLV-STKVDAEKRMVDS-LTSEHNESSEEALDCDQVDDTAVV 508

Query: 1435 DLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            DL   ++  VKV+S ED+ AG Y   DI+LPLPGSRV YPSN+I +IYHDLAKK
Sbjct: 509  DLPAERSDLVKVVSIEDLEAGTYLTSDIVLPLPGSRVIYPSNDIAEIYHDLAKK 562


>ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Capsella rubella]
            gi|482568803|gb|EOA32992.1| hypothetical protein
            CARUB_v10016322mg [Capsella rubella]
          Length = 704

 Score =  648 bits (1671), Expect = 0.0
 Identities = 330/533 (61%), Positives = 406/533 (76%), Gaps = 3/533 (0%)
 Frame = +1

Query: 7    MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSE--IAEE 180
            M +V+E+DVGI C+IS+LPGFRGILKQRY+DFIVNEV ++GNVVHLT+LD P E  + EE
Sbjct: 39   MKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDINGNVVHLTSLDLPPEMDVKEE 98

Query: 181  KKEKTDDLVDRDFSQEIESFRVLAGDPDVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSH 360
             K K+ D V ++++  IESF+ ++   D E+L+ LI+QV SG  +    VVL PSSDKS 
Sbjct: 99   DKTKSSDNVPQNYTSAIESFKSISNATDAERLETLINQVTSGTDDEISPVVLDPSSDKSK 158

Query: 361  RTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSR 540
            RTAIHNF KE  KFLVTDT+DGPDS+SKCIRVR+                     P+DSR
Sbjct: 159  RTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPFDSR 218

Query: 541  GSDNWPENIGKFLRFHLYKENKDTQEALGLLAKMLGTKPRSFGFAGTKDKRSVSTQRVTV 720
            GS++WPE++GKFLRFHLYKENKDTQEALGL+ KMLG +P+SFGF+GTKDKRSVSTQ VTV
Sbjct: 219  GSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQCVTV 278

Query: 721  FKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIISENEDIIKAAAI 900
            FKQ+AS+LAALN++L GIKVG+FCHV EGL+LGQL GNRFTITLR +++++E+ IK +A 
Sbjct: 279  FKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSAE 338

Query: 901  ALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYY 1080
            +LGK+GFINYFGLQRFGS S+PTH +GAALL+GEW+ A       R          REYY
Sbjct: 339  SLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ERINAWHVVNDAREYY 392

Query: 1081 KESGDIEGTIRQLPRQLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1260
            KE+GDI+GT+RQLPR LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYLWN+
Sbjct: 393  KETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNN 452

Query: 1261 AASMRVTNYGFHQVVLGDLVYCNEEQREKELITSVLECGDDEGDDTHIDCD-LEDIPVTD 1437
            AAS+RV  YG  QVVLGDLV    +  +K   TS       E ++  +DCD ++D  + D
Sbjct: 453  AASLRVKKYGTSQVVLGDLVSTKIDATKKMADTS----EHKENNEDALDCDQVDDTAIVD 508

Query: 1438 LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1596
            L   ++  VKV+S ED+ AG Y+  DI+LPLPGSRV YPSN+I +IYHDLAKK
Sbjct: 509  LPAERSDLVKVVSVEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKK 561