BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00013587
         (1162 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU34894.1| hypothetical protein MIMGU_mgv1a005743mg [Mimulus...   429   e-117
gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Mimulus...   406   e-110
ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated prot...   345   2e-92
ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated prot...   339   2e-90
ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated prot...   335   2e-89
ref|XP_006339934.1| PREDICTED: RNA polymerase II-associated prot...   327   8e-87
ref|XP_007031158.1| Tetratricopeptide repeat-like superfamily pr...   326   1e-86
ref|XP_006339935.1| PREDICTED: RNA polymerase II-associated prot...   323   7e-86
emb|CBI39598.3| unnamed protein product [Vitis vinifera]              322   1e-85
ref|XP_006382393.1| hypothetical protein POPTR_0005s01710g [Popu...   322   2e-85
ref|XP_007031159.1| Tetratricopeptide repeat (TPR)-like superfam...   322   2e-85
ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot...   322   2e-85
ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfam...   321   4e-85
ref|XP_004302236.1| PREDICTED: RNA polymerase II-associated prot...   314   4e-83
ref|XP_006433540.1| hypothetical protein CICLE_v10003914mg [Citr...   304   4e-80
ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated prot...   304   4e-80
ref|XP_006472205.1| PREDICTED: RNA polymerase II-associated prot...   302   2e-79
ref|XP_006382392.1| hypothetical protein POPTR_0005s01710g [Popu...   298   3e-78
gb|EXB53029.1| RNA polymerase II-associated protein 3 [Morus not...   297   5e-78
ref|XP_006392426.1| hypothetical protein EUTSA_v10023436mg [Eutr...   290   1e-75

>gb|EYU34894.1| hypothetical protein MIMGU_mgv1a005743mg [Mimulus guttatus]
          Length = 472

 Score =  429 bits (1103), Expect = e-117
 Identities = 234/376 (62%), Positives = 276/376 (73%), Gaps = 5/376 (1%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKL-DNPSQSSYNDSS 939
            MAK P KHSRD  +++EGLLNNLQDWELSFKEKDKK+R+D +G+ KL D   Q S N+  
Sbjct: 1    MAKTPSKHSRDLPQELEGLLNNLQDWELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 60

Query: 938  RLSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKEL 759
            R  D+ +V  ++T +KT S  N +TV+Q+DHLK+YE LS+L+S V S E  VDANSEKEL
Sbjct: 61   RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 120

Query: 758  GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 579
            GNEFFKQKKF EAIDCYSRSIALSP+AVAYANRAMAYIK++RFQEAENDCTEALNLDDRY
Sbjct: 121  GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 180

Query: 578  IKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 399
            IKAYSRRSTARKELGKLK+S+DD EFALRLEPQNQ+IKKQ AE K+LLEK I+KK SGAL
Sbjct: 181  IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 240

Query: 398  AGPLEGAHKGKVEANKKKYALNSPVGRVAKFVEDDSKAN-IIEVSNQESVEHKGSTILSN 222
             G +EGA  GK E +K         GRV + +E++ K N   EV+   S+E K +++ SN
Sbjct: 241  TGSVEGAQPGKSEVDKNNNVQKPLSGRVTEILEENPKGNKSREVTADTSMEIKQNSVRSN 300

Query: 221  GSHAGAVSECAK---GNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQFEVS 51
            GS     SE AK      +N K + +ASV                KNI PP SAYQFEVS
Sbjct: 301  GSDVITDSETAKLSQTKPKNGKQQLKASVQELAAKAANLAKAEAAKNIVPPNSAYQFEVS 360

Query: 50   WRGLSGDRELQARLLK 3
            WRGLS DR LQ RLL+
Sbjct: 361  WRGLSNDRNLQTRLLQ 376


>gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Mimulus guttatus]
          Length = 462

 Score =  406 bits (1043), Expect = e-110
 Identities = 227/376 (60%), Positives = 266/376 (70%), Gaps = 5/376 (1%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKL-DNPSQSSYNDSS 939
            MAK P KHSRD            QDWELSFKEKDKK+R+D +G+ KL D   Q S N+  
Sbjct: 1    MAKTPSKHSRDLP----------QDWELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 50

Query: 938  RLSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKEL 759
            R  D+ +V  ++T +KT S  N +TV+Q+DHLK+YE LS+L+S V S E  VDANSEKEL
Sbjct: 51   RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 110

Query: 758  GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 579
            GNEFFKQKKF EAIDCYSRSIALSP+AVAYANRAMAYIK++RFQEAENDCTEALNLDDRY
Sbjct: 111  GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 170

Query: 578  IKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 399
            IKAYSRRSTARKELGKLK+S+DD EFALRLEPQNQ+IKKQ AE K+LLEK I+KK SGAL
Sbjct: 171  IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 230

Query: 398  AGPLEGAHKGKVEANKKKYALNSPVGRVAKFVEDDSKAN-IIEVSNQESVEHKGSTILSN 222
             G +EGA  GK E +K         GRV + +E++ K N   EV+   S+E K +++ SN
Sbjct: 231  TGSVEGAQPGKSEVDKNNNVQKPLSGRVTEILEENPKGNKSREVTADTSMEIKQNSVRSN 290

Query: 221  GSHAGAVSECAK---GNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQFEVS 51
            GS     SE AK      +N K + +ASV                KNI PP SAYQFEVS
Sbjct: 291  GSDVITDSETAKLSQTKPKNGKQQLKASVQELAAKAANLAKAEAAKNIVPPNSAYQFEVS 350

Query: 50   WRGLSGDRELQARLLK 3
            WRGLS DR LQ RLL+
Sbjct: 351  WRGLSNDRNLQTRLLQ 366


>ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X1
            [Solanum tuberosum]
          Length = 468

 Score =  345 bits (886), Expect = 2e-92
 Identities = 201/380 (52%), Positives = 250/380 (65%), Gaps = 9/380 (2%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MAKVP KHSRDQ +D++GLLNNLQDWELS K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL----REDWSRTSE 56

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 756
            L  +P+V+G +    TS     +    +++ K Y  +S L+S + S+E  ++ANSEKELG
Sbjct: 57   LLTSPQVNGTRVGKSTSIR---SAAGPYNYSKNYNPISHLSSELISEESNINANSEKELG 113

Query: 755  NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 576
            NE FKQKKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 114  NECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 173

Query: 575  KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 396
            KAYSRRST+RKELGKLK+SI+D EFALRLEPQN +IKKQ+ E KAL EKEI K+ SGA  
Sbjct: 174  KAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKEIRKRVSGATD 233

Query: 395  GPLEGAHK-GK-VEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTILSN 222
               + A K GK +++     +++S   ++A+     +K N  +V     VE     I + 
Sbjct: 234  VSAQRAQKSGKTIKSGPVIQSVSSSSQKMAEVWTIPAKENNRDVPGTAKVEDTHMQINNK 293

Query: 221  GSHAGAVSE-------CAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQ 63
             S A             AK   + SK E   SV                KNIA P SAYQ
Sbjct: 294  DSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAPNSAYQ 353

Query: 62   FEVSWRGLSGDRELQARLLK 3
            FEVSWRGLSGDR LQ +LLK
Sbjct: 354  FEVSWRGLSGDRNLQTQLLK 373


>ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X2
            [Solanum tuberosum]
          Length = 467

 Score =  339 bits (869), Expect = 2e-90
 Identities = 200/380 (52%), Positives = 249/380 (65%), Gaps = 9/380 (2%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MAKVP KHSRDQ +D++GLLNNLQDWELS K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL----REDWSRTSE 56

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 756
            L  +P+V+G +    TS     +    +++ K Y  +S L+S + S+E  ++ANSEKELG
Sbjct: 57   LLTSPQVNGTRVGKSTSIR---SAAGPYNYSKNYNPISHLSSELISEESNINANSEKELG 113

Query: 755  NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 576
            NE FKQKKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 114  NECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 173

Query: 575  KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 396
            KAYSRRST+RKELGKLK+SI+D EFALRLEPQN +IKKQ+ E KAL EK I K+ SGA  
Sbjct: 174  KAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEK-IRKRVSGATD 232

Query: 395  GPLEGAHK-GK-VEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTILSN 222
               + A K GK +++     +++S   ++A+     +K N  +V     VE     I + 
Sbjct: 233  VSAQRAQKSGKTIKSGPVIQSVSSSSQKMAEVWTIPAKENNRDVPGTAKVEDTHMQINNK 292

Query: 221  GSHAGAVSE-------CAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQ 63
             S A             AK   + SK E   SV                KNIA P SAYQ
Sbjct: 293  DSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAPNSAYQ 352

Query: 62   FEVSWRGLSGDRELQARLLK 3
            FEVSWRGLSGDR LQ +LLK
Sbjct: 353  FEVSWRGLSGDRNLQTQLLK 372


>ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated protein 3-like [Solanum
            lycopersicum]
          Length = 470

 Score =  335 bits (859), Expect = 2e-89
 Identities = 195/380 (51%), Positives = 246/380 (64%), Gaps = 9/380 (2%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MA+VP  HSRDQ +D++GL NNLQDWEL+ K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1    MARVPSNHSRDQFQDMQGLFNNLQDWELALKGKDKKMKSQAGGKETL----KEDWSRTSE 56

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 756
               +P+ +G +   K++S    N    + + K Y  +S L+S + S+E  ++ANSEKELG
Sbjct: 57   PLTSPQANGTQQVGKSTSI--RNAAGPYSYSKNYNPISHLSSELISEESNINANSEKELG 114

Query: 755  NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 576
            NE FKQKKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 115  NECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 174

Query: 575  KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 396
            KAYSRRST+RKELGKLK+SI+D EFAL LEP+N +IKKQ+ E KAL EKEI+K+ SGA  
Sbjct: 175  KAYSRRSTSRKELGKLKESIEDAEFALWLEPRNPEIKKQYGEVKALYEKEILKRVSGATD 234

Query: 395  GPLEGAHK-GK-VEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTILSN 222
               +G  K GK ++      +++S   +VA+     +K N  +V     VE     I + 
Sbjct: 235  VSAQGPQKSGKTIKIGPVIQSVSSSSQKVAEVRTIPAKENNRDVLGTAKVEDTHMQISNK 294

Query: 221  GSHAGAVSE-------CAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQ 63
             S A             AK   + SK E   SV                KNIA P SAYQ
Sbjct: 295  DSDASPTVPTLNLAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAPNSAYQ 354

Query: 62   FEVSWRGLSGDRELQARLLK 3
            FEVSWRGLSGDR LQ +LLK
Sbjct: 355  FEVSWRGLSGDRNLQTQLLK 374


>ref|XP_006339934.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X3
            [Solanum tuberosum]
          Length = 461

 Score =  327 bits (837), Expect = 8e-87
 Identities = 195/380 (51%), Positives = 244/380 (64%), Gaps = 9/380 (2%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MAKVP KHSRDQ +D++GLLNNLQDWELS K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL----REDWSRTSE 56

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 756
            L  +P+V+G +    TS     +    +++ K Y  +S L+S + S+E  ++ANSEKEL 
Sbjct: 57   LLTSPQVNGTRVGKSTSIR---SAAGPYNYSKNYNPISHLSSELISEESNINANSEKEL- 112

Query: 755  NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 576
                  KKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 113  ------KKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 166

Query: 575  KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 396
            KAYSRRST+RKELGKLK+SI+D EFALRLEPQN +IKKQ+ E KAL EKEI K+ SGA  
Sbjct: 167  KAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKEIRKRVSGATD 226

Query: 395  GPLEGAHK-GK-VEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTILSN 222
               + A K GK +++     +++S   ++A+     +K N  +V     VE     I + 
Sbjct: 227  VSAQRAQKSGKTIKSGPVIQSVSSSSQKMAEVWTIPAKENNRDVPGTAKVEDTHMQINNK 286

Query: 221  GSHAGAVSE-------CAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQ 63
             S A             AK   + SK E   SV                KNIA P SAYQ
Sbjct: 287  DSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAPNSAYQ 346

Query: 62   FEVSWRGLSGDRELQARLLK 3
            FEVSWRGLSGDR LQ +LLK
Sbjct: 347  FEVSWRGLSGDRNLQTQLLK 366


>ref|XP_007031158.1| Tetratricopeptide repeat-like superfamily protein, putative isoform 1
            [Theobroma cacao] gi|508719763|gb|EOY11660.1|
            Tetratricopeptide repeat-like superfamily protein,
            putative isoform 1 [Theobroma cacao]
          Length = 468

 Score =  326 bits (836), Expect = 1e-86
 Identities = 192/385 (49%), Positives = 240/385 (62%), Gaps = 20/385 (5%)
 Frame = -3

Query: 1097 KHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSRLSDNPR 918
            KHSRDQ  D +G LNNLQDWELS KEKDK +++    + +L N                 
Sbjct: 4    KHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLTNEK--------------- 48

Query: 917  VDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGNEFFKQ 738
              GR T   +    +T + RQ+D+L+ Y++ + L+S+  ++E + DA SEKELGNE+FKQ
Sbjct: 49   --GRPTGKSSLIDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQ 106

Query: 737  KKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIKAYSRR 558
            KKF EAIDCYSRSI LSPTAVA+ANRAMAY+K+K+FQEAE+DCTEALNLDDRYIKAYSRR
Sbjct: 107  KKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRR 166

Query: 557  STARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALAGPLEGA 378
            +TARKELGKLK+SI+D EFALRLEP NQ+IKKQHAE K+L EKEI++KASG L   ++ A
Sbjct: 167  ATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEA 226

Query: 377  HK-GKVEANKKKYALNS---PVGRVAKFVEDDSKANIIEVSNQESVEHKGST----ILSN 222
             + GK E  +    ++S      R         +  + E   Q+  E KGS     I   
Sbjct: 227  QEVGKSETKENGLGMHSASNSTQRTGVATVQGYQTKVSEYDKQKKPE-KGSVTSEGIGDR 285

Query: 221  GSHAGAVS------------ECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPP 78
             + AG+              E  K N +  K E +ASV                KNI+PP
Sbjct: 286  NTLAGSRKDGTQLDSGIVGLESIKKNNRTRKPELKASVQELASLAATRAMAEAAKNISPP 345

Query: 77   TSAYQFEVSWRGLSGDRELQARLLK 3
             +AYQFEVSWR LSGDR LQA LLK
Sbjct: 346  NTAYQFEVSWRALSGDRALQAHLLK 370


>ref|XP_006339935.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X4
            [Solanum tuberosum]
          Length = 419

 Score =  323 bits (829), Expect = 7e-86
 Identities = 189/371 (50%), Positives = 234/371 (63%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MAKVP KHSRDQ +D++GLLNNLQDWELS K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL----REDWSRTSE 56

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 756
            L  +P+V+G +    TS     +    +++ K Y  +S L+S + S+E  ++ANSEKELG
Sbjct: 57   LLTSPQVNGTRVGKSTSIR---SAAGPYNYSKNYNPISHLSSELISEESNINANSEKELG 113

Query: 755  NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 576
            NE FKQKKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 114  NECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 173

Query: 575  KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 396
            KAYSRRST+RKELGKLK+SI+D EFALRLEPQN +IKKQ+ E KAL EKE  +   G   
Sbjct: 174  KAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKENNRDVPG--T 231

Query: 395  GPLEGAHKGKVEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTILSNGS 216
              +E  H                                ++++N++S      T+ +   
Sbjct: 232  AKVEDTH--------------------------------MQINNKDS--DASPTVPTLNP 257

Query: 215  HAGAVSECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQFEVSWRGLS 36
              G     AK   + SK E   SV                KNIA P SAYQFEVSWRGLS
Sbjct: 258  AFGT----AKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAPNSAYQFEVSWRGLS 313

Query: 35   GDRELQARLLK 3
            GDR LQ +LLK
Sbjct: 314  GDRNLQTQLLK 324


>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
          Length = 1097

 Score =  322 bits (826), Expect = 1e-85
 Identities = 190/387 (49%), Positives = 248/387 (64%), Gaps = 14/387 (3%)
 Frame = -3

Query: 1121 STMAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPS-QSSYND 945
            S   + P KH+RDQ  D +G L +LQDWELS KEKDKK++A    +   D P+ + +   
Sbjct: 623  SMATRFPSKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEK---DVPTARGNVKH 679

Query: 944  SSRLSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEK 765
            SS+LS +P V  R  + ++ +       RQH++ + ++ +S+++S+  ++E + DA SEK
Sbjct: 680  SSKLSSSPGVSLRLGQSRSDT-------RQHEYSRNHDAISRISSSFMTEESLPDAASEK 732

Query: 764  ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDD 585
            ELGNE+FKQ+KF EAIDCYSRSIAL PTAVAYANRAMAYIK+KRF+EAE+DC EALNLDD
Sbjct: 733  ELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDD 792

Query: 584  RYIKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASG 405
            RYIKAYSRR+TARKELGK K++ +D EFALRLEPQNQ+IKKQ+AE K+L EKEI++KASG
Sbjct: 793  RYIKAYSRRATARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASG 852

Query: 404  ALAGPLEGAHK-GK--VEANKKKYAL----NSPVGRVAKFVEDDSKANIIEVSNQESVEH 246
            AL   ++G  K GK  VE N     +    +S  G     ++D         ++ E  E+
Sbjct: 853  ALKSSVQGLQKVGKSVVEVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETEN 912

Query: 245  KGSTILS--NGSHAGAVS----ECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIA 84
            KG+   S  NG    AV     E    N +  + E ++S+                KNI 
Sbjct: 913  KGTGNRSKENGYLENAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNIT 972

Query: 83   PPTSAYQFEVSWRGLSGDRELQARLLK 3
             P SAYQFEVSWRGL GD  LQA  LK
Sbjct: 973  APNSAYQFEVSWRGLLGDHALQASYLK 999


>ref|XP_006382393.1| hypothetical protein POPTR_0005s01710g [Populus trichocarpa]
            gi|550337753|gb|ERP60190.1| hypothetical protein
            POPTR_0005s01710g [Populus trichocarpa]
          Length = 402

 Score =  322 bits (825), Expect = 2e-85
 Identities = 191/391 (48%), Positives = 256/391 (65%), Gaps = 20/391 (5%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MA+VP KH RDQ  D +G LN+LQDWEL  K+ DKK++                    SR
Sbjct: 1    MARVPGKHGRDQALDFQGFLNDLQDWEL-LKDTDKKMKK------------------KSR 41

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVR-QHDHLKKYEELSQLASTVSSKEGVVDANSEKEL 759
             SD    +  ++  KTS+A ++ +   Q+++ + +  +++L+S+ ++ E  VDA +EKEL
Sbjct: 42   ASDVKIGEDGRSEGKTSAADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKEL 101

Query: 758  GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 579
            GNE+FKQKKFNEAI+CYSRSIALSPTAVAYANRAMAY+K+KRF+EAE+DCTEALNLDDRY
Sbjct: 102  GNEYFKQKKFNEAIECYSRSIALSPTAVAYANRAMAYLKIKRFREAEDDCTEALNLDDRY 161

Query: 578  IKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 399
            IKAYSRR+TARKELGKLK+SI+D EFAL+LEP NQ+IKKQ+AE K+L EKEI++KASG L
Sbjct: 162  IKAYSRRATARKELGKLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKEILQKASGTL 221

Query: 398  AGPLEGAHK-GKVEANKKKYALNSPVG------RVAKFVEDDSKAN-----------IIE 273
               L+G  + G+ EA+   +A++ PV        V+   +D++K N           + E
Sbjct: 222  RSSLQGTQQGGRSEASVNGHAVH-PVSIATQKTGVSASKKDNTKENDGNNLVKKSVHVKE 280

Query: 272  VSNQ-ESVEHKGSTILSNGSHAGAVSECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXX 96
            + N+ +S  H G+   +N + + +V    K N +  + E + SV                
Sbjct: 281  LRNRSKSDGHVGNDSPANATPSSSVESVQKNN-RTRRQELKTSVIELASQAASRAMAEAA 339

Query: 95   KNIAPPTSAYQFEVSWRGLSGDRELQARLLK 3
            KNI PP SAYQFEVSW+G SGDR LQA LLK
Sbjct: 340  KNITPPNSAYQFEVSWQGFSGDRALQAHLLK 370


>ref|XP_007031159.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            isoform 2 [Theobroma cacao] gi|508719764|gb|EOY11661.1|
            Tetratricopeptide repeat (TPR)-like superfamily protein,
            putative isoform 2 [Theobroma cacao]
          Length = 422

 Score =  322 bits (825), Expect = 2e-85
 Identities = 185/366 (50%), Positives = 227/366 (62%), Gaps = 1/366 (0%)
 Frame = -3

Query: 1097 KHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSRLSDNPR 918
            KHSRDQ  D +G LNNLQDWELS KEKDK ++              S  +D  +L  N +
Sbjct: 4    KHSRDQALDFQGFLNNLQDWELSLKEKDKIMK--------------SQASDKEQLKTNEK 49

Query: 917  VDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGNEFFKQ 738
              GR T   +    +T + RQ+D+L+ Y++ + L+S+  ++E + DA SEKELGNE+FKQ
Sbjct: 50   --GRPTGKSSLIDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQ 107

Query: 737  KKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIKAYSRR 558
            KKF EAIDCYSRSI LSPTAVA+ANRAMAY+K+K+FQEAE+DCTEALNLDDRYIKAYSRR
Sbjct: 108  KKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRR 167

Query: 557  STARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALAGPLEGA 378
            +TARKELGKLK+SI+D EFALRLEP NQ+IKKQHAE K+L EKEI++KASG L   ++ A
Sbjct: 168  ATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEA 227

Query: 377  HK-GKVEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTILSNGSHAGAV 201
             + GK E  +    +                             H  S        A   
Sbjct: 228  QEVGKSETKENGLGM-----------------------------HSASNSTQRTGVATVQ 258

Query: 200  SECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQFEVSWRGLSGDREL 21
                K N +  K E +ASV                KNI+PP +AYQFEVSWR LSGDR L
Sbjct: 259  GYQTKKNNRTRKPELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRALSGDRAL 318

Query: 20   QARLLK 3
            QA LLK
Sbjct: 319  QAHLLK 324


>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis
            vinifera]
          Length = 474

 Score =  322 bits (824), Expect = 2e-85
 Identities = 189/383 (49%), Positives = 247/383 (64%), Gaps = 14/383 (3%)
 Frame = -3

Query: 1109 KVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPS-QSSYNDSSRL 933
            + P KH+RDQ  D +G L +LQDWELS KEKDKK++A    +   D P+ + +   SS+L
Sbjct: 4    RFPSKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEK---DVPTARGNVKHSSKL 60

Query: 932  SDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGN 753
            S +P V  R  + ++ +       RQH++ + ++ +S+++S+  ++E + DA SEKELGN
Sbjct: 61   SSSPGVSLRLGQSRSDT-------RQHEYSRNHDAISRISSSFMTEESLPDAASEKELGN 113

Query: 752  EFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIK 573
            E+FKQ+KF EAIDCYSRSIAL PTAVAYANRAMAYIK+KRF+EAE+DC EALNLDDRYIK
Sbjct: 114  EYFKQRKFKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIK 173

Query: 572  AYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALAG 393
            AYSRR+TARKELGK K++ +D EFALRLEPQNQ+IKKQ+AE K+L EKEI++KASGAL  
Sbjct: 174  AYSRRATARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKS 233

Query: 392  PLEGAHK-GK--VEANKKKYAL----NSPVGRVAKFVEDDSKANIIEVSNQESVEHKGST 234
             ++G  K GK  VE N     +    +S  G     ++D         ++ E  E+KG+ 
Sbjct: 234  SVQGLQKVGKSVVEVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTG 293

Query: 233  ILS--NGSHAGAVS----ECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTS 72
              S  NG    AV     E    N +  + E ++S+                KNI  P S
Sbjct: 294  NRSKENGYLENAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNS 353

Query: 71   AYQFEVSWRGLSGDRELQARLLK 3
            AYQFEVSWRGL GD  LQA  LK
Sbjct: 354  AYQFEVSWRGLLGDHALQASYLK 376


>ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            isoform 4 [Theobroma cacao] gi|508719766|gb|EOY11663.1|
            Tetratricopeptide repeat (TPR)-like superfamily protein,
            putative isoform 4 [Theobroma cacao]
          Length = 421

 Score =  321 bits (822), Expect = 4e-85
 Identities = 183/366 (50%), Positives = 225/366 (61%), Gaps = 1/366 (0%)
 Frame = -3

Query: 1097 KHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSRLSDNPR 918
            KHSRDQ  D +G LNNLQDWELS KEKDK +++    + +L N                 
Sbjct: 4    KHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLTNEK--------------- 48

Query: 917  VDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGNEFFKQ 738
              GR T   +    +T + RQ+D+L+ Y++ + L+S+  ++E + DA SEKELGNE+FKQ
Sbjct: 49   --GRPTGKSSLIDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQ 106

Query: 737  KKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIKAYSRR 558
            KKF EAIDCYSRSI LSPTAVA+ANRAMAY+K+K+FQEAE+DCTEALNLDDRYIKAYSRR
Sbjct: 107  KKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRR 166

Query: 557  STARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALAGPLEGA 378
            +TARKELGKLK+SI+D EFALRLEP NQ+IKKQHAE K+L EKEI++KASG L   ++ A
Sbjct: 167  ATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEA 226

Query: 377  HK-GKVEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTILSNGSHAGAV 201
             + GK E  +    +                             H  S        A   
Sbjct: 227  QEVGKSETKENGLGM-----------------------------HSASNSTQRTGVATVQ 257

Query: 200  SECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQFEVSWRGLSGDREL 21
                K N +  K E +ASV                KNI+PP +AYQFEVSWR LSGDR L
Sbjct: 258  GYQTKKNNRTRKPELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRALSGDRAL 317

Query: 20   QARLLK 3
            QA LLK
Sbjct: 318  QAHLLK 323


>ref|XP_004302236.1| PREDICTED: RNA polymerase II-associated protein 3-like [Fragaria
            vesca subsp. vesca]
          Length = 407

 Score =  314 bits (805), Expect = 4e-83
 Identities = 184/371 (49%), Positives = 230/371 (61%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MA+ P KH RDQ  D +G L++LQDWELS K+KDKK+R           P Q        
Sbjct: 1    MARAPSKHGRDQALDFQGFLSDLQDWELSLKDKDKKMR-----------PQQ-------- 41

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 756
                P  +  K+RD  +S+Y+TN          YE ++ ++S+ +S++G+ DA SEK+LG
Sbjct: 42   ----PNKEAPKSRDFGTSSYSTN----------YEPMNTVSSSFTSEDGLPDAASEKDLG 87

Query: 755  NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 576
            NE+FKQKKF EAIDCYSRSIAL+PTAVA+ANRAM+YIK+KRFQEAENDCTEALNLDDRYI
Sbjct: 88   NEYFKQKKFKEAIDCYSRSIALTPTAVAFANRAMSYIKIKRFQEAENDCTEALNLDDRYI 147

Query: 575  KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 396
            KAYSRR+TARKELGKLK+SI+D EFALRLEP NQ+IKKQ+AE K+L EK I++K SGA+ 
Sbjct: 148  KAYSRRATARKELGKLKESIEDAEFALRLEPHNQEIKKQYAEAKSLYEKGILQKVSGAI- 206

Query: 395  GPLEGAHKGKVEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTILSNGS 216
              +    K KVE +                             N  S++   ST  +  +
Sbjct: 207  -KISEQDKQKVEKSG-------------------------TTVNGHSIQPVSST--TQRT 238

Query: 215  HAGAVSECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQFEVSWRGLS 36
               AV +  K    N K   + SV                +NI PP+SAYQFE SWRGLS
Sbjct: 239  ETTAVGDHTKKINTNGKQASKLSVQELASRAASRAKALAAENITPPSSAYQFEASWRGLS 298

Query: 35   GDRELQARLLK 3
            GDR LQA+LLK
Sbjct: 299  GDRALQAKLLK 309


>ref|XP_006433540.1| hypothetical protein CICLE_v10003914mg [Citrus clementina]
            gi|557535662|gb|ESR46780.1| hypothetical protein
            CICLE_v10003914mg [Citrus clementina]
          Length = 977

 Score =  304 bits (779), Expect = 4e-80
 Identities = 181/375 (48%), Positives = 235/375 (62%)
 Frame = -3

Query: 1127 FRSTMAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYN 948
            +++   K+PP H+RDQ  D +G LN+LQDW+LS  EKDKK++                + 
Sbjct: 533  YKAINEKMPP-HNRDQALDFQGFLNDLQDWDLSLHEKDKKMK----------------HK 575

Query: 947  DSSRLSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSE 768
             SS+  DN      K+ +K S + N+       + + Y+ +S+++S++ ++E   DA SE
Sbjct: 576  ASSK--DNLVSSSLKSGEKPSPSGNS-------YSRNYDPVSRISSSLMNEESTPDATSE 626

Query: 767  KELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLD 588
            KELGNE FKQKKF EAIDCYSRSIALSPTAVAYANRAMAY+K++RFQEAE+DCTEALNLD
Sbjct: 627  KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 686

Query: 587  DRYIKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKAS 408
            DRYIKAYSRR+TARKELGKLK+SI+D EFALRLEPQNQ+IKKQ AE K+L EKE+ +KAS
Sbjct: 687  DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 746

Query: 407  GALAGPLEGAHKGKVEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTIL 228
              L     G    KV  ++ +   N+        ++D + +   E  N            
Sbjct: 747  KTL--EKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRD 804

Query: 227  SNGSHAGAVSECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQFEVSW 48
             +G++A  +S   K N +  K+   ASV                KNI PP SAY+FEVSW
Sbjct: 805  GSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSW 864

Query: 47   RGLSGDRELQARLLK 3
            RG +GD  LQARLLK
Sbjct: 865  RGFAGDHALQARLLK 879


>ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis
            sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA
            polymerase II-associated protein 3-like [Cucumis sativus]
          Length = 458

 Score =  304 bits (779), Expect = 4e-80
 Identities = 179/390 (45%), Positives = 230/390 (58%), Gaps = 19/390 (4%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MA    KH RDQL D +G LN+LQDWE+SFK KDKKL+   +G+ K D            
Sbjct: 1    MADSSAKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKED------------ 48

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 756
                     R+  +K S+A         D++K+Y+ +++L+    ++   VDA SEKE G
Sbjct: 49   ---------RRQTEKASAA---------DYMKQYDAVNRLSRNFQTEGSFVDAASEKEQG 90

Query: 755  NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 576
            NE+FKQKKF EAIDCYSRSIALSPTAVA+ANRAMAY+K++RFQEAE+DCTEALNLDDRYI
Sbjct: 91   NEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYI 150

Query: 575  KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 396
            KAYSRR+TARKELGK K++++D EFA RLEP NQ+IKKQHA+ +A + K I++KASGA  
Sbjct: 151  KAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASR 210

Query: 395  GPLEGAHKGKVEANKKKYALNSPVG---------RVAKFVEDDSKANIIEVS-------- 267
               +     K   +  K     PV             + VE++   N ++ S        
Sbjct: 211  SSTKNKKTLKKSDSDAKIQDIPPVSSSTSRTGLLAARERVEENGGGNAVKTSARLEESED 270

Query: 266  NQESVEHKGSTILSNGSHAGAVS--ECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXK 93
                 E     + +NG H  + S     + +    K E +ASV                K
Sbjct: 271  TSSGAEITSKKVATNGFHKDSSSYLSALERDHLPRKQELKASVYELASQAASRSMVEAAK 330

Query: 92   NIAPPTSAYQFEVSWRGLSGDRELQARLLK 3
            NI  PT+AYQFEVSWRG SGD+ LQARLLK
Sbjct: 331  NIIAPTTAYQFEVSWRGFSGDQALQARLLK 360


>ref|XP_006472205.1| PREDICTED: RNA polymerase II-associated protein 3-like [Citrus
            sinensis]
          Length = 438

 Score =  302 bits (774), Expect = 2e-79
 Identities = 177/365 (48%), Positives = 224/365 (61%)
 Frame = -3

Query: 1097 KHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSRLSDNPR 918
            KH+RDQ  D +G LN+LQDW+LS  EKDKK++     +  L + S  S            
Sbjct: 3    KHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKS------------ 50

Query: 917  VDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGNEFFKQ 738
                K    + ++Y+ N          Y+ +S ++S++ ++E   DA SEKELGNE FKQ
Sbjct: 51   ---AKKPSPSGNSYSRN----------YDPVSHISSSLMNEESTPDATSEKELGNECFKQ 97

Query: 737  KKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIKAYSRR 558
            KKF EAIDCYSRSIALSPTAVAYANRAMAY+K++RFQEAE+DCTEALNLDDRYIKAYSRR
Sbjct: 98   KKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 157

Query: 557  STARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALAGPLEGA 378
            +TARKELGKLK+SI+D EFALRLEPQNQ+IKKQ AE K+L EKE+ +KAS  L     G 
Sbjct: 158  ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL--EKYGK 215

Query: 377  HKGKVEANKKKYALNSPVGRVAKFVEDDSKANIIEVSNQESVEHKGSTILSNGSHAGAVS 198
               KV  ++ +   N+        ++D + +   E  N             +G++A  +S
Sbjct: 216  SGMKVNGHEVRAVRNTTQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHIS 275

Query: 197  ECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXKNIAPPTSAYQFEVSWRGLSGDRELQ 18
               K N +  K+   ASV                KNI PP SAY+FEVSWRG +GD  LQ
Sbjct: 276  GLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQ 335

Query: 17   ARLLK 3
            ARLLK
Sbjct: 336  ARLLK 340


>ref|XP_006382392.1| hypothetical protein POPTR_0005s01710g [Populus trichocarpa]
            gi|550337752|gb|ERP60189.1| hypothetical protein
            POPTR_0005s01710g [Populus trichocarpa]
          Length = 462

 Score =  298 bits (763), Expect = 3e-78
 Identities = 184/395 (46%), Positives = 247/395 (62%), Gaps = 24/395 (6%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MA+VP KH RDQ  D          WEL  K+ DKK++                    SR
Sbjct: 1    MARVPGKHGRDQALD----------WEL-LKDTDKKMKK------------------KSR 31

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVR-QHDHLKKYEELSQLASTVSSKEGVVDANSEKEL 759
             SD    +  ++  KTS+A ++ +   Q+++ + +  +++L+S+ ++ E  VDA +EKEL
Sbjct: 32   ASDVKIGEDGRSEGKTSAADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKEL 91

Query: 758  GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 579
            GNE+FKQKKFNEAI+CYSRSIALSPTAVAYANRAMAY+K+KRF+EAE+DCTEALNLDDRY
Sbjct: 92   GNEYFKQKKFNEAIECYSRSIALSPTAVAYANRAMAYLKIKRFREAEDDCTEALNLDDRY 151

Query: 578  IKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 399
            IKAYSRR+TARKELGKLK+SI+D EFAL+LEP NQ+IKKQ+AE K+L EKEI++KASG L
Sbjct: 152  IKAYSRRATARKELGKLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKEILQKASGTL 211

Query: 398  AGPLEGAHK-GKVEANKKKYALNSPVG------RVAKFVEDDSKA--------NIIEVS- 267
               L+G  + G+ EA+   +A++ PV        V+   +D++K         N+++ S 
Sbjct: 212  RSSLQGTQQGGRSEASVNGHAVH-PVSIATQKTGVSASKKDNTKLEQEENDGNNLVKKSV 270

Query: 266  -------NQESVEHKGSTILSNGSHAGAVSECAKGNFQNSKSEFRASVXXXXXXXXXXXX 108
                     +S  H G+   +N + + +V    K N +  + E + SV            
Sbjct: 271  HVKELRNRSKSDGHVGNDSPANATPSSSVESVQKNN-RTRRQELKTSVIELASQAASRAM 329

Query: 107  XXXXKNIAPPTSAYQFEVSWRGLSGDRELQARLLK 3
                KNI PP SAYQFEVSW+G SGDR LQA LLK
Sbjct: 330  AEAAKNITPPNSAYQFEVSWQGFSGDRALQAHLLK 364


>gb|EXB53029.1| RNA polymerase II-associated protein 3 [Morus notabilis]
          Length = 450

 Score =  297 bits (761), Expect = 5e-78
 Identities = 181/390 (46%), Positives = 231/390 (59%), Gaps = 19/390 (4%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSF--KEKDKKLRADTLGRGKLDNPSQSSYNDS 942
            MA+ P KH RD+    +G LN+LQDWE S   K+KDKK++A    +G        S + S
Sbjct: 1    MARAPTKHGRDEALAFQGFLNDLQDWEFSLEDKDKDKKMKAQASDKG-------ISVSSS 53

Query: 941  SRLSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKE 762
             ++ +  +   RK   K+S+    ++   +D+ +KY+ ++Q++S+  S++   DA SEKE
Sbjct: 54   KKIGEAGK--DRKAAGKSSTFEYLSSSMPYDYSRKYDAINQVSSSSISEDSYTDAASEKE 111

Query: 761  LGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKR----------------- 633
            LGNE+FKQKKF EAIDCYSRSIALS TAVAYANRAMAY+K+KR                 
Sbjct: 112  LGNEYFKQKKFKEAIDCYSRSIALSSTAVAYANRAMAYLKLKRQLLPYLIFFCKSIFLIR 171

Query: 632  FQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHA 453
            FQEAE DCTEALN+DDRYIKAYSRR+TARKELGKLK+ I+D EFALRLEP NQ+IKKQ++
Sbjct: 172  FQEAEGDCTEALNMDDRYIKAYSRRATARKELGKLKECIEDAEFALRLEPNNQEIKKQYS 231

Query: 452  ECKALLEKEIMKKASGALAGPLEGAHKGKVEANKKKYALNSPVGRVAKFVEDDSKANIIE 273
            E K+L EK I++KAS                      AL + V ++ K  + D+K     
Sbjct: 232  EAKSLCEKVILQKAS---------------------VALENTVQKMQKAEKKDTKVQNNG 270

Query: 272  VSNQESVEHKGSTILSNGSHAGAVSECAKGNFQNSKSEFRASVXXXXXXXXXXXXXXXXK 93
            +   ES   K        + A    +  K N    K E +ASV                K
Sbjct: 271  IQPVESATQK--------TEAAVAEDYTKINQTAKKQEPKASVQELASRAASRAMNGTAK 322

Query: 92   NIAPPTSAYQFEVSWRGLSGDRELQARLLK 3
            NI  PTSAYQFEVSWRGLSGDR LQA LLK
Sbjct: 323  NIRSPTSAYQFEVSWRGLSGDRALQASLLK 352


>ref|XP_006392426.1| hypothetical protein EUTSA_v10023436mg [Eutrema salsugineum]
            gi|557088932|gb|ESQ29712.1| hypothetical protein
            EUTSA_v10023436mg [Eutrema salsugineum]
          Length = 473

 Score =  290 bits (741), Expect = 1e-75
 Identities = 179/406 (44%), Positives = 232/406 (57%), Gaps = 35/406 (8%)
 Frame = -3

Query: 1115 MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 936
            MA+ P KH RDQ +D +G LN+LQDWELS K+KDKK++ +      L NP          
Sbjct: 1    MARSPSKHGRDQTQDFQGFLNDLQDWELSLKDKDKKIKQN------LSNP---------- 44

Query: 935  LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 756
                           TS  +  +   Q+D +KKY  +S L+S+ +  E  +DANSEKE G
Sbjct: 45   ---------------TSEKFRPSGSGQYDFVKKYGPMSGLSSSFADDESPLDANSEKEQG 89

Query: 755  NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 576
            NE+FKQKKFNEAIDCYSRSIALSP AVA+ANRAMAY+K+KR++EAE DCTEALNLDDRY 
Sbjct: 90   NEYFKQKKFNEAIDCYSRSIALSPNAVAFANRAMAYLKIKRYREAEIDCTEALNLDDRYT 149

Query: 575  KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 396
            KAYSRR+TARK LG +K++++D EFALRLEPQ+Q+++KQ+A+ K+LLEKEI++KASGA+ 
Sbjct: 150  KAYSRRATARKALGMVKEAMEDAEFALRLEPQSQELQKQYADIKSLLEKEIIEKASGAMQ 209

Query: 395  GPLEGAHKGKVEANKKKYA---LNSPVGRVAK----FVEDDSKAN------IIEVSNQES 255
               +   K      K K        PV  VAK     V   S++N      +IE  + E 
Sbjct: 210  STAQELLKTAGLDKKAKIPNTDTKKPVTLVAKTNGDMVRPVSRSNESSGKKLIESVDPEE 269

Query: 254  VEHKGSTILS----------------------NGSHAGAVSECAKGNFQNSKSEFRASVX 141
               +GS  +S                        S         + N  ++K E + SV 
Sbjct: 270  KHKEGSKKISAITENVDNKKVTPISQSYEKEAKSSGGNVTQPSEQVNQVSTKLELKPSVQ 329

Query: 140  XXXXXXXXXXXXXXXKNIAPPTSAYQFEVSWRGLSGDRELQARLLK 3
                           KNI  P SAY+FE +WR  SGDR LQ +LLK
Sbjct: 330  ELATRAASLAMSEVTKNIKAPKSAYEFENTWRSFSGDRALQKQLLK 375