BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00009008
         (5211 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus...  2888   0.0  
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...  2836   0.0  
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...  2833   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2804   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  2747   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  2746   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2746   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  2744   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  2744   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  2744   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  2744   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...  2744   0.0  
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ...  2742   0.0  
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun...  2740   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  2738   0.0  
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su...  2734   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  2731   0.0  
ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phas...  2729   0.0  
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun...  2729   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  2729   0.0  

>gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus guttatus]
          Length = 1842

 Score = 2888 bits (7488), Expect = 0.0
 Identities = 1434/1537 (93%), Positives = 1482/1537 (96%), Gaps = 2/1537 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MDLRFPFSPAEVAKVR VQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETCMANMA+CPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCSKILA+ EEPK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKIVLSILRCVCFNCSKILADEEEPK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQAMRIRNPKNRL+KIL+ACK+K+KC+GGDEIDGH QD EEPVKKSRGGCGAQQPK+++
Sbjct: 121  FKQAMRIRNPKNRLRKILDACKNKTKCDGGDEIDGHSQDTEEPVKKSRGGCGAQQPKISI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            DGMK+VA+YK           MPEPVERKQ LSAEKVLSILKRITDEDC  LGLNP+FAR
Sbjct: 181  DGMKMVAEYKLQKKKSDDQDQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKFAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            LLRYSAWHQE EKGFITPGDTQVRIEKGELL+GTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LLRYSAWHQETEKGFITPGDTQVRIEKGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFSMGIGDTIAD  TM KI+ETI+ AKNEV ELIRAAQEKQL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSMGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            LESLKLK+ DFNDMYKYEID  NWNPNYMLPEAVEDLKTIREIRSVFDAEV KLE DRFQ
Sbjct: 901  LESLKLKKSDFNDMYKYEIDNSNWNPNYMLPEAVEDLKTIREIRSVFDAEVTKLEVDRFQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            LGTEIATTGDNSWPLPVNIKRLVLNAQKTF+VDFRRPSDMHPMEIVEAVDKLQERLKVVV
Sbjct: 961  LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            GDDYLS EAQKNATLFFNILLRSALASKRVLKEYRLTREAF+WV+GEIESRFLQSLVAAG
Sbjct: 1021 GDDYLSTEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P VSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI
Sbjct: 1141 PDVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
            DPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            N++APKGE+ DES+EDDVFLKKIEGNMLTEMALRGIPDINKVFIKN K+NKFDEN+GFKA
Sbjct: 1261 NEQAPKGELADESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            ENEWMLDTEGVNLLAV+CHE+VD RRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 ENEWMLDTEGVNLLAVMCHEEVDVRRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD 
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSP-MGT 4687
            LRGVTENIMLGQLAPIGTGDCAL +NE+MLKQAIEIPLPSYMEGGLEFGMTPGRSP  GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALLLNEQMLKQAIEIPLPSYMEGGLEFGMTPGRSPHSGT 1500

Query: 4688 PYHDGMMSPNYML-SPNLRLSPVSDAQFSPYVGGVAF 4795
            PYHDGMMSPNY+L SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1501 PYHDGMMSPNYLLMSPNLRLSPVTDAQFSPYVGGMAF 1537


>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
            lycopersicum]
          Length = 1846

 Score = 2836 bits (7351), Expect = 0.0
 Identities = 1398/1536 (91%), Positives = 1472/1536 (95%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MDLRFPFSPAEVAKVR VQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETCMANMA+CPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCSKILA+ ++PK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQAMRIRNPKNRL+K+L+ACK+K+KCEGGDEID  GQD EEPVKKSRGGCGAQQPK+++
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            DGMK+VA+YK           MPEPVERKQ LSAE+VLSILKR++DEDC+ LGLNP+FAR
Sbjct: 181  DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQ L         SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDNDLPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRK+TKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            LLRYSAWH + EKG+ITPGDTQVRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQ AFS+GIGDTIAD  TM KI+ETI+ AK +V ELI+AAQEK L
Sbjct: 661  RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK K+  F+DMY YEID PNWNP+YMLPEAVEDLK IREIRSVFDAEVQKLEADR Q
Sbjct: 901  LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            LGTEIA TGDNSWPLPVNI+RLVLNAQKTF++DFRRPSDMHPMEIVEAVDKLQERLKVV 
Sbjct: 961  LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            GDDYLS+EAQKNATLFFNILLRSALASKRVLKEYRL+REAF+WVVGEIESRFLQSLVA G
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P V KTKE+AK VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDVEFVKSYYEMPDEEI
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
            DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIKN KV KFD+NEGFKA
Sbjct: 1261 NDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            ENEWMLDTEGVNLLAV+ HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTG C+LY+NEEMLKQAIEIPLPSYMEGGLEFGMTPGRSP+ GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYHDGMMSPNY+LSPN+R+SP++DAQFSPYVGG+AF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score = 2833 bits (7344), Expect = 0.0
 Identities = 1396/1536 (90%), Positives = 1471/1536 (95%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MDLRFPFSPAEVAKVR VQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETCMANMA+CPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCSKILA+ ++PK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQAMRIRNPKNRL+K+L+ACK+K+KCEGGDEID  G D EEPVKKSRGGCGAQQPK+++
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            DGMK+VA+YK           MPEPVERKQ LSAE+VLSILKR++DEDC+ LGLNP+FAR
Sbjct: 181  DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQ L         SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDNDLPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRK+TKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            LLRYSAWH + EKG+ITPGDTQVRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQ AFS+GIGDTIAD  TM KI+ETI+ AK +V ELI+AAQEK L
Sbjct: 661  RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK K+  F+DMY YEID PNWNP+YMLPEAVEDLK IREIRSVFDAEVQKLEADR Q
Sbjct: 901  LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            LGTEIA TGDNSWPLPVNI+RLVLNAQKTF++DFRRPSDMHPMEIVEAVDKLQERLKVV 
Sbjct: 961  LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            GDDYLS+EAQKNATLFFNILLRSALASKRVLKEYRL+REAF+WVVGEIESRFLQSLVA G
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P V KTKE+AK VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDVEFVKSYYEMPDEEI
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
            DPDKISPWLLRIELNREMMVDKKLSMADIAEKIN+EFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIKN KV KFD+NEGFKA
Sbjct: 1261 NDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            ENEWMLDTEGVNLLAV+ HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTG C+LY+NEEMLKQAIEIPLPSYMEGGLEFGMTPGRSP+ GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYHDGMMSPNY+LSPN+R+SP++DAQFSPYVGG+AF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2804 bits (7269), Expect = 0.0
 Identities = 1378/1536 (89%), Positives = 1467/1536 (95%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD+RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+ E+ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA +IRNPKNRLKKIL+ACK+KSKCEGGDEI+    D++EPVKKSRGGCGAQQPKLT+
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ LSAE+VL++LKRI+DEDC+ LGLNP++AR
Sbjct: 181  EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            +DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            LLR SAWH E E GFITPGDTQVRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQN FS+GIGDTIAD  TM KI+ETI+KAKNEV ELIRAAQE+QL
Sbjct: 661  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+ ++KYEID  NWNP+YMLPE VEDLKTIRE R+VFDAEVQKLEADRFQ
Sbjct: 901  LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            LGTEIATTGDNSWP+PVN+KRL+ NAQKTF+VD RRPSDMHPMEIVEAVDKLQERLKVV 
Sbjct: 961  LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            GDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P VSKTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
             P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK+GKVNKFDE+EGFK 
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTGDCALY+N++ML+ AIE+ LPSYME GL+FGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME-GLDFGMTPSRSPITGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYHDGMMSPNY+LSPNLRLSP++DAQFSPYVGG+AF
Sbjct: 1500 PYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 2747 bits (7121), Expect = 0.0
 Identities = 1357/1539 (88%), Positives = 1453/1539 (94%), Gaps = 4/1539 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD+RFP+SPAEVAKVR VQFGILSP+EIR MSVV I+HSET ERGKPK  GLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKC+TC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+ILA+ E+ +
Sbjct: 61   DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEID-GHGQDNEEPVKKSR-GGCGAQQPKL 724
            FKQA++IRNPK RLKK+L+ CK+K+KCEGGD+ID    QD+EE VKK R GGCGAQQPK+
Sbjct: 121  FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180

Query: 725  TLDGMKLVADYKNXXXXXXXXXXM-PEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQ 901
            T++GMK+VA+YK           M PEPVERKQ L+AEKVL++LKRITDEDC  LGLNP+
Sbjct: 181  TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240

Query: 902  FARPDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAH 1081
            +ARPDWMILQV+         SVMMDTSSRSEDDLTHQLAM+IRHNENLKRQE+NGAPAH
Sbjct: 241  YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300

Query: 1082 IISEFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1261
            IISEFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301  IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360

Query: 1262 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 1441
            SARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 361  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420

Query: 1442 IIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1621
            IIR+DGQRLDLRYLKKS D HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421  IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480

Query: 1622 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1801
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 481  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540

Query: 1802 QDTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPR 1981
            QDTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+
Sbjct: 541  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600

Query: 1982 QINLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGP 2161
            QINL+RYSAWH E E GFITPGDT VRIE+GELLSGTLCKKTLG+SSGSLIHVIWEEVGP
Sbjct: 601  QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660

Query: 2162 DAARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQE 2341
            DAARKFLGHTQWLVNYWLLQ AFS+GIGDTIAD  TM KI+ETI+KAKNEV ELI+AAQE
Sbjct: 661  DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720

Query: 2342 KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINIS 2521
            KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINIS
Sbjct: 721  KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780

Query: 2522 QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMG 2701
            QMTACVGQQNVEGKRIPFGF DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMG
Sbjct: 781  QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840

Query: 2702 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2881
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 841  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900

Query: 2882 SQPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEAD 3061
            SQ L+SLK+KR +F ++YKYEIDQ NW+P+YMLPE VEDLKTIRE ++VFDAEVQKLEAD
Sbjct: 901  SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960

Query: 3062 RFQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLK 3241
            R QLGTEI TTGDNSWP+PVN+KRL+ NAQK F+VD RRPSDMHPMEIVEAVDKLQERLK
Sbjct: 961  RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020

Query: 3242 VVVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLV 3421
            VV GDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRLTREAFDWV+GEIESRFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080

Query: 3422 AAGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3601
            A GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140

Query: 3602 FLKPGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPD 3781
            +LK  V+KTKEKAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDV+FV+SYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200

Query: 3782 EEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 3961
            EE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260

Query: 3962 RIMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEG 4141
            RIMNDEAPKGE+ DESSEDDVFLKKIE NMLTEMALRGIPDINKVFIK+GK+NKFDENEG
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320

Query: 4142 FKAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4321
            FK E EWMLDTEGVNLLAV+C+E+VDA RTTSNHLIEVI+VLGIEAVR+ALLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380

Query: 4322 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 4501
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440

Query: 4502 TDYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM 4681
             D+LRGVTENIMLGQLAPIGTGDCALY+N++ML+QAIE+ LPSYME G++FGMTP RSPM
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYME-GMDFGMTPSRSPM 1499

Query: 4682 -GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
             GTPYH+GMMSP Y+LSPN+R SP++DAQFSPYVGG+AF
Sbjct: 1500 TGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2746 bits (7119), Expect = 0.0
 Identities = 1348/1536 (87%), Positives = 1445/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MDLRFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVL+I+R VCFNCSKIL + E+PK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA+RI+NPKNRL+KIL+ACK+K+KCEGGDEID  GQD+++PVKKSRGGCGAQQPK+++
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK+ A+YK           +PEPVERKQ L+AE+VL ILKRITDEDC  LGLNP++AR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L R SAWH E E G ITPGDT VRIEKGELLSGTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+ AKNEV  LI+ AQE+ L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F  +++YE +  NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            LGTEIATTG+NSWP+PVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERLKVV 
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            G+D LS+EAQKNATLFFNILLRS  ASKRVL EYRLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P  +KTKE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED++FVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
             P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFDENEGFK 
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E EWMLDTEGVNLLAV+ HEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTG CALY+N+EMLK AIE+ LPSY++ GL+FGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYH+GMMSPNY+LSPNLRLSP+SDAQFSPYVGG+AF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 2746 bits (7119), Expect = 0.0
 Identities = 1348/1536 (87%), Positives = 1445/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MDLRFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVL+I+R VCFNCSKIL + E+PK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA+RI+NPKNRL+KIL+ACK+K+KCEGGDEID  GQD+++PVKKSRGGCGAQQPK+++
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK+ A+YK           +PEPVERKQ L+AE+VL ILKRITDEDC  LGLNP++AR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L R SAWH E E G ITPGDT VRIEKGELLSGTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+ AKNEV  LI+ AQE+ L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F  +++YE +  NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            LGTEIATTG+NSWP+PVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERLKVV 
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            G+D LS+EAQKNATLFFNILLRS  ASKRVL EYRLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P  +KTKE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED++FVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
             P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFDENEGFK 
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E EWMLDTEGVNLLAV+ HEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTG CALY+N+EMLK AIE+ LPSY++ GL+FGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYH+GMMSPNY+LSPNLRLSP+SDAQFSPYVGG+AF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 2744 bits (7114), Expect = 0.0
 Identities = 1344/1536 (87%), Positives = 1448/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCSKILA+ ++ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA++IRNPKNRLKKIL+ACK+K+KCEGGDEID  GQD EEP+KK++GGCGAQQPKLT+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ L+AE+VL +LKRI+DEDC  LGLNP++AR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            L TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKVV 
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            PGV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
             P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 2744 bits (7114), Expect = 0.0
 Identities = 1344/1536 (87%), Positives = 1448/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCSKILA+ ++ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA++IRNPKNRLKKIL+ACK+K+KCEGGDEID  GQD EEP+KK++GGCGAQQPKLT+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ L+AE+VL +LKRI+DEDC  LGLNP++AR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            L TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKVV 
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            PGV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
             P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 2744 bits (7114), Expect = 0.0
 Identities = 1344/1536 (87%), Positives = 1448/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCSKILA+ ++ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA++IRNPKNRLKKIL+ACK+K+KCEGGDEID  GQD EEP+KK++GGCGAQQPKLT+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ L+AE+VL +LKRI+DEDC  LGLNP++AR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            L TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKVV 
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            PGV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
             P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 2744 bits (7114), Expect = 0.0
 Identities = 1344/1536 (87%), Positives = 1448/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCSKILA+ ++ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA++IRNPKNRLKKIL+ACK+K+KCEGGDEID  GQD EEP+KK++GGCGAQQPKLT+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ L+AE+VL +LKRI+DEDC  LGLNP++AR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            L TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKVV 
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            PGV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
             P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score = 2744 bits (7113), Expect = 0.0
 Identities = 1344/1536 (87%), Positives = 1447/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCSKILA+ ++ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA++IRNPKNRLKKIL+ACK+K+KCEGGDEID  GQD EEP+KK +GGCGAQQPKLT+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ L+AE+VL +LKRI+DEDC  LGLNP++AR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            L TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKVV 
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            PGV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
             P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
            cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|590702285|ref|XP_007046586.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
          Length = 1861

 Score = 2742 bits (7109), Expect = 0.0
 Identities = 1348/1537 (87%), Positives = 1448/1537 (94%), Gaps = 2/1537 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MDLRFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+ EE K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA++I+NPKNRLKKIL+ACK+KSKCEGGDEID  GQD EEPVKKSRGGCGAQQPKL++
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            DGMK++A+YK           +PEPVERKQ L+AE+VLS+LKRI+DEDC  LGLNP+FAR
Sbjct: 181  DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTH LAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFHVATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            LLR SAWH E E GFITPGDTQVRIEKGELLSGTLCKK LG+SSGSLIHVIWEEVGPDAA
Sbjct: 601  LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+KAK EV  LI  AQ K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEEVKNLIVKAQNKDL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMMESFEN+VNQVLNKARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNP-NYMLPEAVEDLKTIREIRSVFDAEVQKLEADRF 3067
            L+SLK+K+ +F+ +++Y ID  +WNP +YMLPE +EDL+TI+E+R VF+AEVQKL+ADR+
Sbjct: 901  LDSLKMKKSEFDRVFRYNIDDESWNPTSYMLPEHIEDLRTIQELRDVFEAEVQKLDADRY 960

Query: 3068 QLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVV 3247
            QLGTEIA TGD++WPLPVN+KRL+ NAQKTF+VDFRR SD+HP+EIV++VDKLQERLKVV
Sbjct: 961  QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV 1020

Query: 3248 VGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAA 3427
             G D LS+EAQKNATLFF+ILLRS LASKRVL+EYRLT+EAF+WV+GEIESRFLQSLVA 
Sbjct: 1021 PGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP 1080

Query: 3428 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 3607
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1140

Query: 3608 KPGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEE 3787
             P  SKTKEKAKNVQCALEYTTLRSVT ATEVWYDPDP STIIEED++FVKSYYEMPDEE
Sbjct: 1141 SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKSYYEMPDEE 1200

Query: 3788 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 3967
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1201 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260

Query: 3968 MNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFK 4147
            MNDE PKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK+ K +KFDE +G+K
Sbjct: 1261 MNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK 1320

Query: 4148 AENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFD 4327
               EW+LDTEGVNLLAV+CHEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFD
Sbjct: 1321 TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380

Query: 4328 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 4507
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1440

Query: 4508 YLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-G 4684
            YLRGVTENIMLGQLAPIGTGDCALY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ G
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSG 1499

Query: 4685 TPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            TPYH+GMMSP+Y+LSPNLRLSP++DAQFSPYVGG+AF
Sbjct: 1500 TPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1536


>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
            gi|462398589|gb|EMJ04257.1| hypothetical protein
            PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 2740 bits (7102), Expect = 0.0
 Identities = 1347/1536 (87%), Positives = 1444/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVV IEHSET   GKPK  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKIL + ++ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA+RI++PKNRLKKIL+ACK+K+KC+GGDEID  GQ++EEPVKKSRGGCGAQQPKL++
Sbjct: 121  FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK+ A+YK           +PEPVERKQ L+AE+VLS+LKRI+DED   LGLNP++AR
Sbjct: 181  EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L R SAWH E E G ITPGDT VRIEKGELL+GTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+KAKNEV +LI  AQ KQL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            EAEPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+  + YE+D  NWNP+YML E VEDLKTIRE R+VFDAEVQKLE DR Q
Sbjct: 901  LDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            LGTEIA TGDNSWPLPVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERLKVV 
Sbjct: 961  LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            GDD LS+EAQKNATLFF+ILLRS  ASKRVL EYRLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P  +KTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV+FV SYYEMPDEE+
Sbjct: 1141 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
            +PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            N EAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK+GKVNKFD NEGFKA
Sbjct: 1261 NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTGDCALY+N+EMLK AIE+ LPSYM+ GL+FGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMD-GLDFGMTPSRSPVSGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYH+GMMSPNY+LSPNLRLSP+SDAQFSPYVGG+AF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 2738 bits (7098), Expect = 0.0
 Identities = 1344/1536 (87%), Positives = 1444/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRK+KCETC A+MA+CPGHFGHLELAKPM+HIGF+KTVL+I+RCVCFNCSKILA+  + K
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA+RIRNPKNRLKKIL+ACK+KSKCEGGDEID  GQD +EPVKKSRGGCGAQQPK+T+
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ LSAE+VL +LKRI+DEDC  LGLNP++AR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L+RYS+WH E E+G ITPGDT VRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+ AK +V +LIR AQEK+L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+ +++YE D  NW P YML E VEDLKTIRE R+VF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            L TEIATTGD+S PLPVN+KRL+ NAQKTF+VDFRRPSDMHPMEIVEA+DKLQERLKVV 
Sbjct: 961  LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            G+D LS EAQKNATL FNILLRS  ASKRVL+EYRL+REAF+WVVGEIESRFLQSLVA+G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+L+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
              V KTKE+AK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FVKSYYEMPDEE+
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
              +KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+ DES+EDDVFLKKIE NMLTEM LRGIPDINKVFIKN KV KFDEN+GFK 
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
              EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTG+CALY+N+EMLK AIE+ LPSYM+ GL+FGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYH+G+MSP+Y+LSPNLRLSP SDAQFSPYVGG+AF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
            arietinum]
          Length = 1834

 Score = 2734 bits (7088), Expect = 0.0
 Identities = 1343/1536 (87%), Positives = 1445/1536 (94%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPKIGGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC A+MA+CPGHFG+LELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+ ++ K
Sbjct: 61   DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA+RI++PKNRL+KIL+ACK+K+KCEGGD+ID  G D EEPVKKSRGGCGAQQPK+T+
Sbjct: 121  FKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGHDTEEPVKKSRGGCGAQQPKITI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ LSAE+VL +LKRI+DEDC  LGLNP++AR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDW+ILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD+
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVP PTILKP+P+WTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPTPTILKPEPMWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L+RYS+WH E EKG ITPGDT VRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHNENEKGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI++AK +V +LIR AQEK+L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKEKVKQLIREAQEKKL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            EAEPGRTMMESFENRVNQ LN+ARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ DF+  ++YE D  NW P YML E VEDLKTIRE R+VF+AEVQKL+ADRFQ
Sbjct: 901  LDSLKMKKADFDRAFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            L TEIATTGD+S PLPVN+KRL+ NAQKTF+VDFRRPSDMHPMEIVEA+DKLQERLKVV 
Sbjct: 961  LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            GDD LS EAQKNATL FNILLRS  ASKRVL+EYRL+REAF+WVVGEIESRFLQSLVA+G
Sbjct: 1021 GDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P V KTKE+AK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PEVCKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
              +KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+ DES+EDDVFLKKIE NMLTEM LRGI DINKVFIKN K+ KFDENEGFK 
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKIQKFDENEGFKP 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
              EWMLDTEGVNLLAV+CHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 YEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTG+CAL +N+EMLK AIE+ LPSYME GL+FGMTPGRSP+  T
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYME-GLDFGMTPGRSPISAT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYH+G+MSP+Y+LSPNLRLSP +DAQFSPYVGG+AF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTNDAQFSPYVGGMAF 1535


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 2731 bits (7079), Expect = 0.0
 Identities = 1335/1537 (86%), Positives = 1447/1537 (94%), Gaps = 2/1537 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD RFP+SPAEVAKV+ VQFGILSPDEIRQMSVV IEH+ET ERGKPK GGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRK+KCETCMA MA+CPGHFGHLELAKPM+HIGFIKTVLSI+RCVCFNCSKILA+ ++ K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEID-GHGQDNEEPVKKSRGGCGAQQPKLT 727
            FKQA++IRNPKNRLK+I +ACKSK  C GGD++D    QD +EPVK+ RGGCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179

Query: 728  LDGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFA 907
            +DGMK+VA++K           +PEPVERKQILSAE+VL++LKRI+DEDC+ LGLNP+FA
Sbjct: 180  VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 908  RPDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHII 1087
            RPDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 1088 SEFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 1267
            +EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 1268 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 1447
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 1448 RDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 1627
            R+DGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 1628 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 1807
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 1808 TLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQI 1987
            TLLGCRKITKRDT I+KDVFMNILMWWEDFDGKVPAP ILKP+P+WTGKQVFNLIIP+ I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPI 599

Query: 1988 NLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDA 2167
            NL+R+SAWH E E GFITPGDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2168 ARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQ 2347
            ARKFLGHTQWLVNYWLLQN FS+GIGDTIAD  TM KI+ETI+ AKNEV ELI+ A +K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKH 719

Query: 2348 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQM 2527
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2528 TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGR 2707
            TACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2708 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2887
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2888 PLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRF 3067
             L+SLK+K+ +F+ +++YE+D  NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADRF
Sbjct: 900  KLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRF 959

Query: 3068 QLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVV 3247
            QLGTEIATTGDN+WP+PVN+KRL+ NAQKTF++D RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 3248 VGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAA 3427
             GDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRLT+EAF+WV+GEIESRFLQSLVA 
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079

Query: 3428 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 3607
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 3608 KPGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEE 3787
            KP V+K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDVEFV+SYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 3788 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 3967
            +DPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 VDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 3968 MNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFK 4147
             NDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKF++N+GFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFK 1319

Query: 4148 AENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFD 4327
             +NEWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379

Query: 4328 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 4507
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 4508 YLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-G 4684
            YLRGVTENIMLGQLAPIGTG CALY+N++ML+QAIE+ LPSY+E GL+FGMTP RSP+ G
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1498

Query: 4685 TPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            TPYH+GMMSP+Y+LSPN+R SP++DAQFSPYVGG+AF
Sbjct: 1499 TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535


>ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
            gi|561031277|gb|ESW29856.1| hypothetical protein
            PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score = 2729 bits (7075), Expect = 0.0
 Identities = 1339/1536 (87%), Positives = 1442/1536 (93%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRK+KCETC A+MA+CPGHFGHLELAKPM+HIGF+KTVL+I+RCVCFNCSKILA+  + K
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA+RIRNPKNRLKKIL+ACK+KSKCEGGDEID  GQD +EPVKKSRGGCGAQQPK+T+
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ LSAE+VL +LKRI+DEDC  LGLNP++AR
Sbjct: 181  EGMKIIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+ IN
Sbjct: 541  LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWTGKQVFNLIIPKPIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L+RYS+WH E E+G ITPGDT VRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+ AK +V +LIR AQEK+L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+ +++YE D  NW P YML E VEDLKTIRE R+VF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            L TEIATTGD+S PLPVN+KRL+ NAQKTF+VDFRRPSDMHPMEIVEA+DKLQERL+VV 
Sbjct: 961  LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVP 1020

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            G+D LS EAQKNATL FNILLRS  ASKRVL+EYRL+REAF+WVVGEIESRFLQSLVA+G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+L 
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLN 1140

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P V KTKE+AK+VQCALEYTTLRSVTQATEVWYDP+PMSTII+EDV+FVKSYYEMPDEE+
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPEPMSTIIDEDVDFVKSYYEMPDEEV 1200

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
              +KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            NDEAPKGE+ DES+EDDVFLKKIE NMLTEM LRGIPDINKVFIKN KV KFDE+EGFK 
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDESEGFKP 1320

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
              EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTG+CALY+N+EMLK AIE+ LPSYM+ GL+FGMTP RSP+ GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            PYH+G+MSP+Y+LSPNLRLSP SDAQFSPYVGG+AF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
            [Populus trichocarpa] gi|550338614|gb|ERP60834.1|
            DNA-directed RNA polymerase II largest subunit family
            protein [Populus trichocarpa]
          Length = 1837

 Score = 2729 bits (7073), Expect = 0.0
 Identities = 1344/1539 (87%), Positives = 1448/1539 (94%), Gaps = 4/1539 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD RFP+SPAEVAKVR VQFGILSPDEIRQMSV+ IEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+ E+ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FKQA++I+NPK+RLKKIL+ACK+K+KCEGGDEID  GQDNEEPVKKSRGGCGAQQPKLT+
Sbjct: 121  FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            +GMK++A+YK           +PEPVERKQ L+AE+VLS+LKRI+DEDC  LGL+P++AR
Sbjct: 181  EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQER+GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAPTI+KP+PLWTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L+R +AWH + E+G ITPGDT VRIEKGELLSGTLCKKTLG+SSGSLIHVIWEEVGPDAA
Sbjct: 601  LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+ AKNEV +LIR AQ K+L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL 720

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+ +++YE D  +WNP YM+ + VEDL+ IRE+R VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTDHVEDLRNIRELRDVFDAEVQKLEADRYQ 960

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFR--RPSDMHPMEIVEAVDKLQERLKV 3244
            LGTEIATTGDN+WP+PVN+KRL+ NAQKTF++D R  R SD+HPME VEAVDKLQERLKV
Sbjct: 961  LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQERLKV 1020

Query: 3245 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 3424
            V GDD LS+EAQKNATLFF ILLRS LASKRVL+EYRL+REAFDWV+GEIESRFLQSLVA
Sbjct: 1021 VPGDDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVA 1080

Query: 3425 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 3604
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1140

Query: 3605 LKPGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 3784
            LKP  +KTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FVKSYYEMPDE
Sbjct: 1141 LKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE 1200

Query: 3785 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 3964
            E+ P+KISPWLLRIELNREMM+DKKL+MADIAEKIN EFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1201 EVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLILRIR 1260

Query: 3965 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 4144
            IMNDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIKN KV+ FDE+EGF
Sbjct: 1261 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSSFDESEGF 1320

Query: 4145 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 4324
            K   EWMLDTEGVNLLAV+C+E+VDAR+TTSNHLIEVIEV+GIEAVR++LLDELRVVISF
Sbjct: 1321 KTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVIGIEAVRRSLLDELRVVISF 1380

Query: 4325 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 4504
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1440

Query: 4505 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 4681
            DYLRGVTENIMLGQLAPIGTG CALY+N+EMLK AIE+ LPSYME GL+FGMTP RSP+ 
Sbjct: 1441 DYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYME-GLDFGMTPARSPVS 1499

Query: 4682 GTPYHDGMMSPNYMLSPNLRLSPVSD-AQFSPYVGGVAF 4795
            GTPYHDGMMSP  ++SPNLR+SP  D   FSPYVGG+AF
Sbjct: 1500 GTPYHDGMMSP-MLMSPNLRMSPTVDGVAFSPYVGGMAF 1537


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 2729 bits (7073), Expect = 0.0
 Identities = 1339/1536 (87%), Positives = 1439/1536 (93%), Gaps = 1/1536 (0%)
 Frame = +2

Query: 191  MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 370
            MD+RFPFSP EVAKVR VQFGILSPDEIRQMSVV IEHSET   GKPK  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 371  DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 550
            DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKIL + ++ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 551  FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDNEEPVKKSRGGCGAQQPKLTL 730
            FK A+RI+NPKNRLKKIL+ACK+K+KCEGGDEID   QD +EP+KKSRGGCGAQQPKLT+
Sbjct: 121  FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDV--QDTDEPLKKSRGGCGAQQPKLTI 178

Query: 731  DGMKLVADYKNXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCVTLGLNPQFAR 910
            DGMK+VA+YK           +PEPVERKQ L+AE+VLS+LKRI+DEDC  LGLNP++AR
Sbjct: 179  DGMKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 238

Query: 911  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1090
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 239  PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 298

Query: 1091 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1270
            EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 299  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 358

Query: 1271 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1450
            TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 359  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 418

Query: 1451 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1630
            DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 419  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 478

Query: 1631 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1810
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 479  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 538

Query: 1811 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1990
            LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 539  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 598

Query: 1991 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2170
            L R SAWH E E G ITPGDT VRIEKGELLSGTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 599  LQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 658

Query: 2171 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2350
            RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+KAKNEV ELI  AQ K L
Sbjct: 659  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKSL 718

Query: 2351 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2530
            E EPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 719  EPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 778

Query: 2531 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2710
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 779  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 838

Query: 2711 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 
Sbjct: 839  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 898

Query: 2891 LESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 3070
            L+SLK+K+ +F+  + Y  D  NWNP+YMLPE VEDLKTIRE R+VFDAEV KLE DR Q
Sbjct: 899  LDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRLQ 958

Query: 3071 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV 3250
            LGTEIA TGDNSWPLPVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERL+VV 
Sbjct: 959  LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVP 1018

Query: 3251 GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG 3430
            GDD LS+EAQKNATLFFNILLRS  ASKRVL+EYRLTREAF+WV+GEIESRFLQSLVA G
Sbjct: 1019 GDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPG 1078

Query: 3431 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 3610
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1079 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1138

Query: 3611 PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 3790
            P  +KTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEED++FV+SYYEMPDEE+
Sbjct: 1139 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEV 1198

Query: 3791 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3970
            +PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFD DLTCIFNDDNAEKLILRIRIM
Sbjct: 1199 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIRIM 1258

Query: 3971 NDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA 4150
            N+E PKG+  DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK+GKVNKFD+NEGFKA
Sbjct: 1259 NEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKA 1318

Query: 4151 ENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4330
            E EWMLDTEGVNLLAV+CH+DVDA+RTTSNHLIE+IEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1319 EQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDG 1378

Query: 4331 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 4510
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA+V+AETD+
Sbjct: 1379 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETDH 1438

Query: 4511 LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM-GT 4687
            LRGVTENIMLGQLAPIGTGDCALY+N+EMLK AIE+ LPSY++ GL+FGMTP RSP+ GT
Sbjct: 1439 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVD-GLDFGMTPSRSPVSGT 1497

Query: 4688 PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 4795
            P+ DGMMSPNY+LSPN+R+SP+SDAQFSPYVGG+AF
Sbjct: 1498 PFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533