BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00003399
         (4193 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]  2080   0.0  
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...  1856   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1728   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1726   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1724   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1722   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1722   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1717   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1701   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1692   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1664   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...  1654   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1652   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1649   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1646   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1640   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1620   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1615   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...  1612   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1599   0.0  

>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score = 2080 bits (5389), Expect = 0.0
 Identities = 1012/1195 (84%), Positives = 1102/1195 (92%), Gaps = 2/1195 (0%)
 Frame = -1

Query: 3875 KIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEINTE 3696
            ++GDNDMIVTQIS+GGL+  ++AK+L D+LED VGLVWRCRVKTSSTPQDSYPN+EI+TE
Sbjct: 3    QVGDNDMIVTQISIGGLEGYVTAKLLSDYLEDNVGLVWRCRVKTSSTPQDSYPNYEIDTE 62

Query: 3695 SVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMR 3516
            +VQRK EYEKVEPHAFVHFA+A+S+A A++LS +G L+LG  I+KV  GPQNPYRL E R
Sbjct: 63   NVQRKGEYEKVEPHAFVHFAVAQSSASAMKLSGAGDLVLGRHILKVGLGPQNPYRLRERR 122

Query: 3515 RTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRG 3336
            RTTTP+K+PGV++EIG ++SRDEFVVGWRGP+TG DFLVDPFNGTCQI FT+DTAFSI+G
Sbjct: 123  RTTTPYKVPGVTVEIGAMKSRDEFVVGWRGPRTGLDFLVDPFNGTCQILFTKDTAFSIKG 182

Query: 3335 EARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYD 3156
            EARPAVIKCNFK+EFVPREIN+IKRYKDF+S+V+L QLAS P LYYRTADDDIEESVP+D
Sbjct: 183  EARPAVIKCNFKMEFVPREINQIKRYKDFSSVVVLFQLASSPLLYYRTADDDIEESVPFD 242

Query: 3155 LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI--ER 2982
            LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPR+  QLEKALG+LQ RRVP       ER
Sbjct: 243  LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRHLSQLEKALGYLQNRRVPVENGSPQER 302

Query: 2981 LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQN 2802
            LRVQDEPDFGVPM DPFFCFQYKEGL+FKVMFMVNAVVHKGIINQHQ S  FFDLLR Q 
Sbjct: 303  LRVQDEPDFGVPMADPFFCFQYKEGLNFKVMFMVNAVVHKGIINQHQTSKQFFDLLRSQP 362

Query: 2801 EEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSK 2622
            EE NLVALKHI+SYKRP YDA RALD+V KWL+KNPKLLQRP+QMDDIVEVRRL+ITPSK
Sbjct: 363  EELNLVALKHIYSYKRPVYDAYRALDSVTKWLIKNPKLLQRPDQMDDIVEVRRLVITPSK 422

Query: 2621 AYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSP 2442
            AYCLPPEVELSNRVLR Y++ISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVRE+T NL+P
Sbjct: 423  AYCLPPEVELSNRVLRNYKNISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREITSNLNP 482

Query: 2441 QKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKF 2262
            Q+TTMF+RVRDILY+GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ T+V  IK WMGKF
Sbjct: 483  QRTTMFKRVRDILYQGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRKTSVVCIKTWMGKF 542

Query: 2261 TNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVA 2082
            TNRNVAKCAARMGQCFSSTYATVEVP +QAN K  DVERN Y+FSDGIGMIS+DLAKEVA
Sbjct: 543  TNRNVAKCAARMGQCFSSTYATVEVPSAQANSK-SDVERNGYIFSDGIGMISADLAKEVA 601

Query: 2081 EKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTRF 1902
            EKLQ+ T LPCA+QIRYAGYKGVVACWPA  NGHRLQLR SM+KFDS+HTTLEICSWTRF
Sbjct: 602  EKLQLRTKLPCAYQIRYAGYKGVVACWPAENNGHRLQLRPSMKKFDSDHTTLEICSWTRF 661

Query: 1901 QPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAA 1722
            QPGFLNRQIVTLLS+LEV D+ FWRMQELM++RLD ILEDPDMAFDVLT SC+D GNTAA
Sbjct: 662  QPGFLNRQIVTLLSSLEVCDENFWRMQELMIARLDGILEDPDMAFDVLTASCSDQGNTAA 721

Query: 1721 MMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 1542
            MMLAAGFR   EPHLRGML SIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF
Sbjct: 722  MMLAAGFRSHTEPHLRGMLMSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 781

Query: 1541 IQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRHL 1362
            IQVS PSLEDCFA HGSEFS+TKK+ EVIKGLVVIAKNPCLHPGDVRILEAVDV GL HL
Sbjct: 782  IQVSKPSLEDCFANHGSEFSETKKDLEVIKGLVVIAKNPCLHPGDVRILEAVDVRGLHHL 841

Query: 1361 HDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRG 1182
            +DCL+FPQKGERPH NEASGSDLDGDLYFVTWDD LIPPSK+SW PMDYEPGEVK KPR 
Sbjct: 842  YDCLVFPQKGERPHANEASGSDLDGDLYFVTWDDTLIPPSKRSWLPMDYEPGEVKLKPRE 901

Query: 1181 VTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGK 1002
            VTHSDIIEFFTKNMVNESLGTICNAHVVHAD S+YGALDEKCIKLAELAAIAVDFPKTGK
Sbjct: 902  VTHSDIIEFFTKNMVNESLGTICNAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGK 961

Query: 1001 IVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIF 822
            IV+MPP+LKP++YPDFMGKEELQSYKSTKILGKLYRR+RDAYN DYE S QLTYP++ I 
Sbjct: 962  IVTMPPDLKPQMYPDFMGKEELQSYKSTKILGKLYRRVRDAYNLDYEASSQLTYPAD-IS 1020

Query: 821  YDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQG 642
            YD+ELE+TGS+DFIADAWSCKCSYDGQL GLLGQYKVNSEDEVVTGHIWSMPK SSKKQG
Sbjct: 1021 YDQELEVTGSKDFIADAWSCKCSYDGQLAGLLGQYKVNSEDEVVTGHIWSMPKFSSKKQG 1080

Query: 641  ELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKS 462
            ELKERLKHAY+ALRKDYRKVFECM P FDQL DHEKNV YEQKASAWYQV+Y ++WV+KS
Sbjct: 1081 ELKERLKHAYNALRKDYRKVFECMAPGFDQLPDHEKNVLYEQKASAWYQVTYQDNWVKKS 1140

Query: 461  KELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
            KELQ++DD GKTVLLSFAWIA DYL RIKIR+R+MENA+S KPIDSLG YLADKI
Sbjct: 1141 KELQELDDSGKTVLLSFAWIAADYLARIKIRRRRMENAISGKPIDSLGRYLADKI 1195


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score = 1856 bits (4807), Expect = 0.0
 Identities = 894/1199 (74%), Positives = 1034/1199 (86%), Gaps = 3/1199 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            MG +I D +MIVTQIS+GGL  N++AKML+D+ ED +GLVWRCR+KTSSTP +SYPN+EI
Sbjct: 1    MGSEISDREMIVTQISVGGLGSNVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEI 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            + +S ++  +Y K++P+AFVHF +A+SA +A+E +  G L    +++KVS GPQNPYRLS
Sbjct: 61   DIDSAKQSDDYVKIQPYAFVHFVVAESANKAVEAASRGDLRFAGKLLKVSLGPQNPYRLS 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
            E RRTTTP+K+    +EIG LRSR+E VVGWRGP++G DFLVDPF+GTC++H  RDTAF 
Sbjct: 121  ERRRTTTPYKLSDAFVEIGSLRSREELVVGWRGPRSGVDFLVDPFSGTCKLHIKRDTAFC 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             +GEAR A+IKC+F+IEF PREI EIK Y+DF+S++IL+QLAS P +YYRTADDDIEE  
Sbjct: 181  FKGEARSAIIKCDFRIEFFPREIIEIKHYRDFSSLIILIQLASSPLIYYRTADDDIEEPA 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI- 2988
              DLLDDDDPWIRTTDF   GA GR NTYRISVRP N   L KAL +L++RRVP + +  
Sbjct: 241  TCDLLDDDDPWIRTTDFTSGGAFGRCNTYRISVRPHNGPHLLKALDYLRKRRVPVLDERT 300

Query: 2987 -ERLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 2811
             +RL VQDEPDFG+P+ DPF C QYKEG+SFKVMF++NAV+HKGIINQHQ+S+   D+ R
Sbjct: 301  RQRLVVQDEPDFGMPVLDPFLCIQYKEGISFKVMFLLNAVMHKGIINQHQISEQLLDMFR 360

Query: 2810 RQNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIIT 2631
            RQ E+ N VALKH+ SYKRP YDA +A++ VQ+WL+KNPKLL+RP  MDDIVEVRRLIIT
Sbjct: 361  RQPEDVNTVALKHMCSYKRPVYDAFKAVETVQRWLLKNPKLLERPRGMDDIVEVRRLIIT 420

Query: 2630 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 2451
            P+KAYCLPPEVELSNRVLR Y++++DRFLRVTF DEAM TLNKN LTYY  P+VR +T +
Sbjct: 421  PAKAYCLPPEVELSNRVLRHYKAVADRFLRVTFTDEAMSTLNKNALTYYVGPMVRGITSS 480

Query: 2450 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 2271
             +PQ+TT+F+R++DIL+ GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK   V +IKNWM
Sbjct: 481  SNPQRTTIFKRIKDILHSGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKDIGVANIKNWM 540

Query: 2270 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 2091
            G+FTNRNVAKCAARMGQCFSSTYATVEVP  Q N KL D+ERN+YVFSDGIGM+S+DLA 
Sbjct: 541  GRFTNRNVAKCAARMGQCFSSTYATVEVPSKQVNSKLPDIERNDYVFSDGIGMLSADLAM 600

Query: 2090 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSW 1911
            EVAEKLQ+ TNLP A+QIRYAGYKGVVACWPA  +G RL LR SM+KFDSNHT LEICSW
Sbjct: 601  EVAEKLQLTTNLPSAYQIRYAGYKGVVACWPAQSDGFRLSLRKSMKKFDSNHTVLEICSW 660

Query: 1910 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 1731
            TRFQPGFLNRQI+TLLSALEV D+ FWRMQE M+SRL+ +LED D AFDVLT SCTD GN
Sbjct: 661  TRFQPGFLNRQIITLLSALEVGDEIFWRMQETMISRLNQMLEDTDTAFDVLTSSCTDQGN 720

Query: 1730 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 1551
            TAA+ML+AGF+P  EPHLRGML+SIRV+QLGDLRE++RIFV SGRWLMGCLDELGVLE+G
Sbjct: 721  TAAIMLSAGFKPQTEPHLRGMLTSIRVAQLGDLRERARIFVPSGRWLMGCLDELGVLEHG 780

Query: 1550 QCFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 1371
            QCFIQVS PSLEDCF KHGSEFS  KK  EVIKGLV IAKNPCLHPGDVRILEAVD PGL
Sbjct: 781  QCFIQVSNPSLEDCFVKHGSEFSGAKKKLEVIKGLVAIAKNPCLHPGDVRILEAVDCPGL 840

Query: 1370 RHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 1191
             HL+DCL+FPQKGERPH NEASGSDLDGDLYFVTWD+NL+PPSK+SW PM+Y PGEVK+ 
Sbjct: 841  HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLMPPSKRSWTPMEYAPGEVKQL 900

Query: 1190 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 1011
            PR V H+DIIEFFTKNMVNESLG ICNAHVVHAD+S+YGALDEKCIKLAELAAIAVDFPK
Sbjct: 901  PREVKHTDIIEFFTKNMVNESLGAICNAHVVHADSSEYGALDEKCIKLAELAAIAVDFPK 960

Query: 1010 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 831
            TGKIV+MP ELKPKLYPDFMGK+E Q+YKS+KILGKLYR+I+D+ N DYE S + T  S 
Sbjct: 961  TGKIVTMPAELKPKLYPDFMGKDEFQTYKSSKILGKLYRKIKDS-NYDYEESSENT--SV 1017

Query: 830  NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 651
            NI YD+ELEI GS  FI DAW+CKCSYDGQL GLLGQYKVNSE+EVVTGHIWSMPK SSK
Sbjct: 1018 NIAYDQELEIAGSESFITDAWNCKCSYDGQLTGLLGQYKVNSEEEVVTGHIWSMPKYSSK 1077

Query: 650  KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 471
            KQGELKERLKHAYS LRKD+RKVFE M  +FDQLSD EKN  +E+KASAWYQV+Y+ESWV
Sbjct: 1078 KQGELKERLKHAYSTLRKDFRKVFESMDAEFDQLSDDEKNTMFERKASAWYQVTYNESWV 1137

Query: 470  EKSKELQKVDDP-GKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
            +KSK+LQ VDD  GKTV+LSFAWIA DYL RIKIR+R+MENA+S KPIDSLG YLADKI
Sbjct: 1138 KKSKDLQVVDDEVGKTVMLSFAWIAADYLARIKIRRRRMENAISMKPIDSLGRYLADKI 1196


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1728 bits (4476), Expect = 0.0
 Identities = 847/1198 (70%), Positives = 988/1198 (82%), Gaps = 2/1198 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            MG +  + D++VTQIS+GG D +++AKML ++LE++VG VWRCR+K SSTP DSYP F++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            + E VQR  +YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
            + RRTT PFK   VSIE+GVL S+D+FVVGWRGP+TG DFLVDPFNG C+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VILLQLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 2985
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 2984 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 2811
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2810 RQNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIIT 2631
               EE NL ALKH+FSYK P  DA++ L  ++KWL+KNPKLL+R  ++DDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2630 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 2451
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2450 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 2271
             +PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2270 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 2091
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 2090 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSW 1911
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 1910 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 1731
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1730 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 1551
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1550 QCFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 1371
            QCFIQVS+PSLE+CF KHG +FS  KKN +V+KGLVVIAKNPCLHPGDVRILEAVDVPGL
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 1370 RHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 1191
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 1190 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 1011
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1010 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 831
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 830  NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 651
            +I YD  LEI GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 650  KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 471
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+Y+  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 470  EKSKELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
             +S ELQ  D    TV+LSFAWIA DYL RIKIR R ++ + S+KPI+SLG YL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1726 bits (4470), Expect = 0.0
 Identities = 845/1198 (70%), Positives = 990/1198 (82%), Gaps = 2/1198 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            MG +  + D++VTQIS+GG D +++AKML ++LE++VG VWRCR+K S+TP DSYP ++I
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            + E V R  +YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
            + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VIL QLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 2985
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +   RRVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 2984 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 2811
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2810 RQNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIIT 2631
             + EE NL ALKH+FSYK P  DA++ L  +QKWL+KNPKLL+R  ++DDIVEVRRL+IT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2630 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 2451
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2450 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 2271
             +PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2270 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 2091
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2090 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSW 1911
            EVAEKL ++ N P A+QIRYAGYKGVVACWP   +G  L LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 1910 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 1731
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1730 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 1551
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1550 QCFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 1371
            QCFIQVS+PSLE+CF KHG +FS  KKN +V+KGLVVIAKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1370 RHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 1191
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1190 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 1011
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1010 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 831
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 830  NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 651
            +I YD  L I GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 650  KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 471
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+Y+  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 470  EKSKELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
             +S ELQ  D    TV+LSFAWIA DYL RIKIR R ++ + S+KPI+SLG YL DKI
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1724 bits (4464), Expect = 0.0
 Identities = 843/1198 (70%), Positives = 987/1198 (82%), Gaps = 2/1198 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            MG +  + +++VTQIS+GG D +++AKML ++LE++VG VWRCR+K SSTP DSYP ++I
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            + E VQR   YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
            + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VIL QLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 2985
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +   RRVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 2984 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 2811
            R  LRV+DEPDFGV M DPFFCFQ  EG+SF+V+F+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359

Query: 2810 RQNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIIT 2631
               EE N  ALKH+FSYK P  DA++ L  +QKWL+KNPKLL R  ++DDIVEVRRL+IT
Sbjct: 360  SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 2630 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 2451
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2450 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 2271
             +PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2270 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 2091
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2090 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSW 1911
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 1910 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 1731
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1730 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 1551
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1550 QCFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 1371
            QCFIQVS+PSLE+CF KHG +FS  KKN +V+KGLVVIAKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1370 RHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 1191
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1190 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 1011
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1010 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 831
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 830  NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 651
            +I YD  LEI GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTG+IWSMPK ++K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAK 1079

Query: 650  KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 471
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+YH  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 470  EKSKELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
             +S ELQ  D    TV+LSFAWIA DYL RIKIR R+++ + S+KPI+SLG YL D I
Sbjct: 1140 ARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1722 bits (4461), Expect = 0.0
 Identities = 844/1198 (70%), Positives = 985/1198 (82%), Gaps = 2/1198 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            MG +  + +++VTQIS+GG D +++AKML ++LE++VG VWRCR+K SSTP DSYP ++I
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            + E VQR   YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
            + RRTT PFK   VS+E+GVL S+ +FVVGWRGP+TG DFLVDPFNGTC+I FT+DT FS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             RGEAR A+IKCNFKIEF+ REINEIK+ KDF S+VILLQLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 2985
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 2984 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 2811
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKV+F+ NAV+HKGI+NQHQM + FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 2810 RQNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIIT 2631
               EE NL ALKH+FSYK P  DA++ L  +QKWL+KNPKLL+R  ++DDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2630 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 2451
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2450 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 2271
             +PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2270 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 2091
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2090 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSW 1911
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 1910 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 1731
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M++ LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1730 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 1551
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1550 QCFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 1371
            QCFIQVS+PSLE+CF KHGS+FS  KKN +V+KGLVVIAKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1370 RHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 1191
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+N+IPPSKKSW PM+YEP EVK+ 
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899

Query: 1190 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 1011
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1010 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 831
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 830  NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 651
            +I YD  LEI GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 650  KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 471
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+YH  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 470  EKSKELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
             +S ELQ  D    TV+LSFAWIA DYL RIKIR R +  + S+KPI+SLG YLADKI
Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1722 bits (4460), Expect = 0.0
 Identities = 844/1198 (70%), Positives = 985/1198 (82%), Gaps = 2/1198 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            MG +  + +++VTQIS GG D +++AKML ++LE++VG VWRCR+K SSTP DSYP ++I
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            + E VQR   YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
            + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNGTC+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VILLQLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 2985
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 2984 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 2811
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2810 RQNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIIT 2631
             + EE N  ALKH+FSYK P  DA++ L  +QKWL+KNPKLL R  ++DDIVEVRRL+IT
Sbjct: 360  SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 2630 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 2451
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2450 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 2271
             +PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2270 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 2091
            G+F+NRNVAKCAARMGQCFSSTYATVEVP  + N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2090 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSW 1911
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 1910 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 1731
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1730 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 1551
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1550 QCFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 1371
            QCFIQVS+PSLE+CF KHG +FS  K+N +V+KGLVVIAKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1370 RHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 1191
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1190 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 1011
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1010 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 831
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 830  NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 651
            +I YD  LEI GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 650  KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 471
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+YH  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 470  EKSKELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
             +S ELQ  D    TV+LSFAWIA DYL RIKIR R+++ + S+KPI+SLG YL D I
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1717 bits (4446), Expect = 0.0
 Identities = 838/1198 (69%), Positives = 985/1198 (82%), Gaps = 2/1198 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            MG +  + D++VTQIS+GG D +++AKML ++LE++VG VWRCR+K S+TP DSYP +++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            +   V R  +YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
            + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNG C+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             RGEA+ A+IKCNFKIEF+ REINEIK++KDFTS+VILLQLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 2985
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 2984 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 2811
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2810 RQNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIIT 2631
               EE NL ALKH+FSYK P  DA++ L  +QKWL+KNPKLL+R  ++DDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2630 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 2451
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2450 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 2271
             +PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2270 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 2091
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599

Query: 2090 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSW 1911
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G  L LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 1910 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 1731
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S L+ +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719

Query: 1730 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 1551
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1550 QCFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 1371
            QCFIQVS+PSLE+CF KHG +FS  KKN +V+KGLVVIAKNPCLHPGDVRILEAVDVPGL
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 1370 RHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 1191
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1190 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 1011
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1010 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 831
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 830  NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 651
            +I YD  LEI GS  F+ DAW+CKCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 650  KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 471
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+Y+  WV
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 470  EKSKELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
             +S ELQ  D    TV+LSFAWIA DYL RI IR R ++ + S+KPI+SLG YL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1701 bits (4404), Expect = 0.0
 Identities = 829/1198 (69%), Positives = 979/1198 (81%), Gaps = 2/1198 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            MG +  + D++VTQIS+GG   +++AKML + LED+VG VWRCR+KTSSTP DSYP ++I
Sbjct: 1    MGSEGSEKDLVVTQISVGGFSNDVNAKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            + E+V+R   Y KVEPHAFVHFA ++SA  AL  +    L L  + +KVS GP+NP+ ++
Sbjct: 61   DVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENPFNMN 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
            + RRT  PFK   V +EIGVL S D+FVVGWRGP +G +FLVDPFNGTC+I FTRDTAF 
Sbjct: 121  KRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFC 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             +GE + AVIKCNFKIEF+ REINEI   KDF S+V+LLQL S P ++YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESV 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 2985
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN   L+KA+ + +E RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGN 300

Query: 2984 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 2811
            R  LRV+DEPDFGV + +PFFCFQ  EG+SFKV+F+VNAV+ KGI+NQHQM+  FF LLR
Sbjct: 301  RQMLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLR 360

Query: 2810 RQNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIIT 2631
            +  E  NL ALKHIFSYKRP  DA++ L +VQKWL KNP LL+R  Q+DD+VEVRRL+IT
Sbjct: 361  KHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVIT 420

Query: 2630 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 2451
            P+KAYCLPP VELSNRVLRKY+ +SDRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T +
Sbjct: 421  PTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSS 480

Query: 2450 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 2271
             +PQ+T +FQRV+ IL KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V +I NWM
Sbjct: 481  SNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWM 540

Query: 2270 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 2091
            GKF NRNVAKCAARMGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+S+DL+ 
Sbjct: 541  GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSI 600

Query: 2090 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSW 1911
            EVA KLQ+  N PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSW
Sbjct: 601  EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 660

Query: 1910 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 1731
            TR QPGFLNRQI+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GN
Sbjct: 661  TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 720

Query: 1730 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 1551
            TAA+ML+AGF+P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDEL  LE G
Sbjct: 721  TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQG 780

Query: 1550 QCFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 1371
            QCFIQVS+PSLE CF KHG +FS+ KKN +VIKGLVVIAKNPCLHPGDVRILEAVDVPGL
Sbjct: 781  QCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 840

Query: 1370 RHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 1191
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PMDY P E K+ 
Sbjct: 841  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQL 900

Query: 1190 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 1011
             R V H+DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 901  GRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 960

Query: 1010 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 831
            TGK+V+MP +LKPK+YPDFMGKE  Q+Y+S KILGKLYR++ D Y+ +   S  L +  +
Sbjct: 961  TGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPK 1020

Query: 830  NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 651
            +I YD  +EI G  DFI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1021 DIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1080

Query: 650  KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 471
            KQGELKERLKHAY+ LRK++R VFE M PDFD L   EKN  YE+KASAWY+V+YH  WV
Sbjct: 1081 KQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWV 1140

Query: 470  EKSKELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
             +S ELQ  D     V+LSFAWIA DY+ RIKIRQR M+N+ S+KPI+ LG YL +KI
Sbjct: 1141 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1692 bits (4381), Expect = 0.0
 Identities = 826/1197 (69%), Positives = 975/1197 (81%), Gaps = 1/1197 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            MG +  D +++VTQIS+GG   +++AKML ++LE++VG VWRCR+KTSSTP DSYP ++I
Sbjct: 1    MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            + E V+R   Y KVEPHAFVHFA ++SA  AL  +    L L  + +KVS GP+N + ++
Sbjct: 61   DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
            E RRT  P+K   V +EIGVL S D+FVVGWRGP +G +FLVDPFNG C+I FTRDTAF 
Sbjct: 121  ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             +GE + AVIKCNFKIEF+ REINEI   KDF+S+V+LLQLAS P ++YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 2985
             +DLLDDDD WIRTTD   SGAIGR NTYR+S+RPRN    +KA+ + +E RVP V   E
Sbjct: 241  AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQGE 300

Query: 2984 R-LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRR 2808
            + LRV++EPDFG  + +PFFCFQ  EG+SFKV+F+VNAV+HKGI+NQHQM+  FF LLR+
Sbjct: 301  QMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRK 360

Query: 2807 QNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITP 2628
              E  NL ALKHIFSYKRP  DA+R L +VQKWL  NP LL+R  Q+DD+VEVRRL+ITP
Sbjct: 361  HQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITP 420

Query: 2627 SKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNL 2448
            +KAYCLPP VELSNRVLRKY+ ISDRFLRVTFMDE M+ LN+N LTYYAA IVRE+T + 
Sbjct: 421  TKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSS 480

Query: 2447 SPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMG 2268
            +PQ+T +FQRV+ I+ KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V SI NWMG
Sbjct: 481  NPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMG 540

Query: 2267 KFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKE 2088
            KF NRNVAKCAARMGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+++DL+ E
Sbjct: 541  KFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIE 600

Query: 2087 VAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWT 1908
            VA KLQ+  N PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSWT
Sbjct: 601  VAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWT 660

Query: 1907 RFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNT 1728
            R QPGFLNRQI+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GNT
Sbjct: 661  RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNT 720

Query: 1727 AAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQ 1548
            AA+ML+AGF+P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDELG LE GQ
Sbjct: 721  AAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQ 780

Query: 1547 CFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLR 1368
            CFIQVS+PSLE CF KHG EFS+ KKN +V+KGLVVIAKNPCLHPGDVRILEAVDVPGL 
Sbjct: 781  CFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH 840

Query: 1367 HLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKP 1188
            HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y P E K+  
Sbjct: 841  HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLG 900

Query: 1187 RGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKT 1008
            R V H+DII+FF KNMV ESLG ICNAHVVHAD S++GA+DEKC+KLAELAA+AVDFPKT
Sbjct: 901  RQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKT 960

Query: 1007 GKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSEN 828
            GK+V+MP +LKPK+YPDFMGKE  QSY+S KILGKLYR++ D Y+ +   S  L Y  ++
Sbjct: 961  GKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKD 1020

Query: 827  IFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKK 648
            I YD  LEI G  DFI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KK
Sbjct: 1021 IPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKK 1080

Query: 647  QGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVE 468
            QGELKERLKHAY+ LRK++R VFE M PDFD L   EKN  YE+KA AWY+V+YH  WV 
Sbjct: 1081 QGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWVT 1140

Query: 467  KSKELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
            +S ELQ  D     V+LSFAWIA DY+ RIKIRQR M+N  S+KPIDSLG YL +KI
Sbjct: 1141 RSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1664 bits (4308), Expect = 0.0
 Identities = 791/1190 (66%), Positives = 971/1190 (81%), Gaps = 2/1190 (0%)
 Frame = -1

Query: 3860 DMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 3684
            + +VTQ+SLGG D +++AK L+++LE ++GLVWRCR+KTS TP +SYPNFEI +   + R
Sbjct: 9    ETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITR 68

Query: 3683 KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 3504
              +Y +VEPHAFVHFAL +SA  A++ ++   L L ++ +K S GP+NP+ L++ RR TT
Sbjct: 69   TEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTT 128

Query: 3503 PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 3324
            PFK+ GV +EIG L SRDEF VGWRGP TG DFLVDPF+GTC+  F+R+TAFS +  A  
Sbjct: 129  PFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEH 188

Query: 3323 AVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDD 3144
            AVIKC+FK+EF+ R+INEIK+Y + + +V+LLQLAS P+++YRTADDDIE SVP+DLLDD
Sbjct: 189  AVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDD 248

Query: 3143 DDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDE 2964
            DDPWIRTTDF  SGAIGR ++YR+S+ PR+  +L KA+ FL+ERRV        +R++DE
Sbjct: 249  DDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDE 308

Query: 2963 PDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLV 2784
            PDFG+PM DPFFC  +KEG++F V+F+VNAV+HKGI NQHQ+S++FFDLLR Q  E N+ 
Sbjct: 309  PDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVA 368

Query: 2783 ALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPP 2604
            ALKHI+ Y+RP +DA + L   Q+WL+KNPK  +  +++DDI E+RRL+ITP+KAYCLPP
Sbjct: 369  ALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPP 428

Query: 2603 EVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMF 2424
            EVELSNRVLRKY+ ++DRFLRVTFMDE +QT+N N L Y+AAPIVR +T    PQKT +F
Sbjct: 429  EVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIF 488

Query: 2423 QRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVA 2244
            +RVR IL +GFYLCGR+YSFLAFSSNQLRDRSAWFFAED++  V +IK+WMGKFTN+N+A
Sbjct: 489  KRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIA 548

Query: 2243 KCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMH 2064
            KCAARMGQCFSSTYAT+EVPP + N  L D++RN Y FSDGIGMI+ DLA+EVAEKL+  
Sbjct: 549  KCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKFD 608

Query: 2063 TNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLN 1884
             + PCA+QIRYAG KGVVACWP   +G RL LR+SM KF SNHT LEICSWTRFQPGFLN
Sbjct: 609  FDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLN 668

Query: 1883 RQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAG 1704
            RQI+TLLSAL V D  FW+MQELMVS+L+ +L D D+AFDVLT SC + GN AA+ML+AG
Sbjct: 669  RQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAG 728

Query: 1703 FRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTP 1524
            F+P  EPHLRGML+ +R +QL  LREK+RIFV SGRWLMGCLDELGVLE GQCFIQVS  
Sbjct: 729  FKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNS 788

Query: 1523 SLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRHLHDCLIF 1344
             LE+CF KHGS+FS+TKKN +V+KG VVIAKNPCLHPGD+RILEAVD PGL HL+DCL+F
Sbjct: 789  YLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVF 848

Query: 1343 PQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDI 1164
            PQKGERPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+  E K+  R V H DI
Sbjct: 849  PQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDI 908

Query: 1163 IEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPP 984
            +EFF KNM NE+LG ICNAHVV AD S+YGALDEKC+ LAELAA AVDFPKTGKIVSMP 
Sbjct: 909  VEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPS 968

Query: 983  ELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAY-NQDYEPSPQLTYPSENIFYDREL 807
            +LKPK+YPDFMGKEE QSYKS KILG+LYR+I+DAY + D   S +L +   +I YD +L
Sbjct: 969  DLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDL 1028

Query: 806  EITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKER 627
            E+ G+ DFI+DAW  KCSYDGQL GLL QYKV  E+EVVTGH+WSMPK SS+KQG+LKER
Sbjct: 1029 EVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKER 1088

Query: 626  LKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQK 447
            LKH+Y+ L++++R+VFE M  DF QL D EKN+ YE+KASAWYQV+YH  W++KS ELQ 
Sbjct: 1089 LKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQD 1148

Query: 446  VDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
             D  G +V+LSFAWIA DYL RIKIR  ++ N  S+KP++SL  YLAD++
Sbjct: 1149 SDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score = 1654 bits (4284), Expect = 0.0
 Identities = 797/1191 (66%), Positives = 962/1191 (80%), Gaps = 1/1191 (0%)
 Frame = -1

Query: 3866 DNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESV 3690
            + D +VTQ+S+GG  ++++AK LM++ +++VG+VWRCR+KTS TP +SYPNFEI ++  +
Sbjct: 7    EKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVI 66

Query: 3689 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 3510
            QR  +Y+KVEPHAFVHFA   +A  A++ +    L+  +Q++KVS GP+NPY L+  RR 
Sbjct: 67   QRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRN 126

Query: 3509 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 3330
            TTPFK+  V ++IG + SRDEF VGWRGP  G DFLVDPF+GTC+  F+RDTAFS +G  
Sbjct: 127  TTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTT 186

Query: 3329 RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 3150
              AVIKC+FK+EF+ R+INEIK+Y + + +V+ LQLAS P+++YRTADD+IEESVP+DLL
Sbjct: 187  EYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLL 246

Query: 3149 DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 2970
            DDDD WIRTTDF PSGAIGR NTYR+ +RPR+  +L+KAL +L+E+RVP       LR+ 
Sbjct: 247  DDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRIS 306

Query: 2969 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 2790
            DEPDFG  M DPF+C  YKEG+ F++MF+VNAV+HKGI NQHQ+S++FF+LLR Q  E N
Sbjct: 307  DEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVN 366

Query: 2789 LVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCL 2610
            + ALKHI+SY+RP +DA + L  V  WL++NP L + P+Q+DDIVE+RRL+ITP+KA+CL
Sbjct: 367  VAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCL 426

Query: 2609 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTT 2430
             PEVELSNRVLRKY+ ++DRFLRVTFMDE MQT+N NVLTYYAA IVR+VT     QKT 
Sbjct: 427  LPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTG 486

Query: 2429 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 2250
            +F+RVR IL  GFYLCGRKYSFLAFS+NQLRD SAWFFAED  T+V  I  WMGKFTNRN
Sbjct: 487  VFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRN 546

Query: 2249 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 2070
            +AKCAARMGQCFSSTYATVEVP ++ N  L D+ERN YVFSDGIG I+ DLAKEVA+KL+
Sbjct: 547  IAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLK 606

Query: 2069 MHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 1890
            +  N PCA+QIRYAG KGVVACWP   +G RL LR SM KF S+HTTLEICSWTRFQPGF
Sbjct: 607  LDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGF 666

Query: 1889 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 1710
            LNRQI+TLLS   V D+ FW MQ  MVS+L+ IL D D+AF+VLT SC++ GN AA+ML+
Sbjct: 667  LNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLS 726

Query: 1709 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 1530
            AGF+P  EPHLRG+L+ +R SQL  LREK+RIFV SGRWLMG LDELGVLE GQCFIQVS
Sbjct: 727  AGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVS 786

Query: 1529 TPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRHLHDCL 1350
             PS+E+CF KHGS F++TKKN EVI+GLVVIAKNPCLHPGD+RILEAVD PGL HL+DCL
Sbjct: 787  NPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 846

Query: 1349 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 1170
            +FPQKGERPH NEASGSDLDGDLYFVTW+D LIPP KKSWPPM Y+PGE KE  R V H 
Sbjct: 847  VFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHK 906

Query: 1169 DIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 990
            DII+FF KNMVNE LGTICNAHVVHAD S+YGALDEKCI LAELAA AVDFPKTGKIVSM
Sbjct: 907  DIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSM 966

Query: 989  PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRE 810
            P  LKPKLYPDFMGKEE QSYKS KILG+LYR I+D Y++D   S ++   S +I YD +
Sbjct: 967  PANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINYDTD 1026

Query: 809  LEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKE 630
            LE+TGS D+I DAW  KCSYD QL+GLLGQYKV  E+EVVTGHIWSMPK +S+K G+LKE
Sbjct: 1027 LEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLKE 1086

Query: 629  RLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQ 450
            +L H+Y ALRK++R++FE M  + +QL++ E+N  YE+KASAWYQV+YH  WVEK  ELQ
Sbjct: 1087 KLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKLELQ 1146

Query: 449  KVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
            K D     V+LSFAWIA DYL RIKIR +   N   SKP++SL  YLADKI
Sbjct: 1147 KSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1652 bits (4278), Expect = 0.0
 Identities = 785/1192 (65%), Positives = 972/1192 (81%), Gaps = 4/1192 (0%)
 Frame = -1

Query: 3860 DMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 3684
            + +VTQ+S+GG D +++AK L+++L+  +GLVWRCR+KTS TP +SYPNFEI +   ++R
Sbjct: 9    ETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIER 68

Query: 3683 KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 3504
              +Y +V PHAFVHFAL +SA  A+  S    L L ++ +KVS GP+NP+ L++ RRTTT
Sbjct: 69   TEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTT 128

Query: 3503 PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 3324
            PFK+  V  EIG L SRDEF VGWRGP +G DFLVDPF+GTC+  F+R+TAFS++  +  
Sbjct: 129  PFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEH 188

Query: 3323 AVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDD 3144
            AVIKC+FK+EF+ R+INEI +Y + + +V+LLQLAS P ++YRTADDDIE  VP+DLLDD
Sbjct: 189  AVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDD 248

Query: 3143 DDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE---RLRV 2973
            DDPWIRTTDF  SGAIGR ++YR+S+ PR+  +L KA+ +L+ERRV  + +     R+R+
Sbjct: 249  DDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRI 308

Query: 2972 QDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEF 2793
             DEPDFG+PM DPFFC  +KEG++F+V+F+VNAV+HKGI NQHQ+S++FFDLLR Q+ E 
Sbjct: 309  LDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEV 368

Query: 2792 NLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYC 2613
            N+ ALKHI +Y+RP ++A R L  VQ+WL+KNP L + P+Q+ D+VE+RRL+ITP+KAYC
Sbjct: 369  NVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYC 428

Query: 2612 LPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKT 2433
            LPPEVELSNRVLRKY+ ++DRFLRVTFMDE +Q +N NVL YY APIVR++T N  PQKT
Sbjct: 429  LPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKT 488

Query: 2432 TMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNR 2253
             +F+RVR IL +GFYLCGR+YSFLAFS+NQLRD+SAWFF+E+++ +V  +K+WMGKFTNR
Sbjct: 489  RIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTNR 548

Query: 2252 NVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKL 2073
            N+AKCAARMGQCFSSTYAT+EVPP + N  L D+ERN YVFSDGIG+I+ DLA+EVAEKL
Sbjct: 549  NIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKL 608

Query: 2072 QMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTRFQPG 1893
            ++  + PCA+QIRYAG KGVVACWP   +G RL LR SM KF SNHTTLEICSWTRFQPG
Sbjct: 609  KLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPG 668

Query: 1892 FLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMML 1713
            FLNRQI+TLLS L V D  FW+MQE MVS+L+ +  + D+AFDVLT SC D GN AA+ML
Sbjct: 669  FLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIML 728

Query: 1712 AAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQV 1533
            +AGF+P  EPHLRGML+ +R +QL DLREK+RIFV SGRWLMGCLDELG+LE GQCFIQV
Sbjct: 729  SAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQV 788

Query: 1532 STPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRHLHDC 1353
            S  SLE CF KHG++FS+ +KN +VIKG VVIAKNPCLHPGDVR+LEAVDVPGL HL+DC
Sbjct: 789  SNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDC 848

Query: 1352 LIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTH 1173
            L+FPQKGERPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+  E K   R V H
Sbjct: 849  LVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNH 908

Query: 1172 SDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVS 993
             DIIEFF KNMVN++LG ICNAHVVHAD S+YGA D+ C+ LAELAA AVDFPKTGK+VS
Sbjct: 909  QDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVS 968

Query: 992  MPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDR 813
            MPP LKPK+YPDFMGKEE QSYKS KILG+LYR+I+DAY++D   S +L     +I YD 
Sbjct: 969  MPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDIPYDS 1028

Query: 812  ELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELK 633
            +LE+ G+ D+I+DAW  KCSYDGQL GLL QYKV  E+EVVTGHIWSMPK SS+KQGELK
Sbjct: 1029 DLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELK 1088

Query: 632  ERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKEL 453
            +RLKH+Y++L+K++R++FE M  +F+QL D EKN  YEQKASAWYQV YH  WV+KS EL
Sbjct: 1089 DRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLEL 1148

Query: 452  QKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
            Q  D  G +V+LSFAWIA DYL RIKIR R+  N  S+KP++SL  YLAD++
Sbjct: 1149 QDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1649 bits (4270), Expect = 0.0
 Identities = 795/1203 (66%), Positives = 961/1203 (79%), Gaps = 7/1203 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            M  K  + + +VTQ+S GG DK+++A+ L+ +L++++G VWRCR+KTS TP +SYPNFEI
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 3704 -NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRL 3528
             +T  +QR   Y +VEPHAFVHFA   SA  A   +    L    + +KVS GP+NP+ L
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 3527 SEMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAF 3348
            ++ RRTT PFK+  V +EIG L SRDEF+VGWRGP +G DFLVDPF+G C+  FTRDTAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 3347 SIRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEES 3168
            S +G    AVI+C+FK+EF+ R+INEIK+Y D + +VILLQLAS P ++YRTADDDIE  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 3167 VPYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI 2988
            VP+DLLDDDDPWIRTTDF PSGAIGR N+YR+S+ PR+  +L++AL FL+ERRV      
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 2987 ERLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRR 2808
              L V  EP++ +PM DPFFC  ++EG+ F +MF+VNAV+HKGI NQHQ+SD+FFDLLR 
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 2807 QNEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITP 2628
            Q  + N+ AL+HI SYK P +DA + L  VQ+WL+KNPKL +  +Q+DDIVE+RRL ITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 2627 SKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNL 2448
            ++AYCLPPEVELSNRVLR+Y+ I+D+FLRVTFMDE +QT+N N LTYY APIVR++T N 
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480

Query: 2447 SPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMG 2268
              QKT +F+RV+ IL  GFYLCGRKYSFLAFSSNQLRDRSAWFFAED  T+V  I+NWMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540

Query: 2267 KFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKE 2088
            KFTNRN+AKCAARMGQCFSSTYATVEVP ++A   L D+ERNNY+FSDGIGMI+ DLAKE
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600

Query: 2087 VAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWT 1908
            VAEKL++  N PCA+QIRYAG KGVVACWPA  +G RL LR SM KF SNHTTLEICSWT
Sbjct: 601  VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660

Query: 1907 RFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNT 1728
            RFQPGFLNRQI+TLLS L+V D+ FW+MQ +MVS+L+ +  D D+AFDV+T SC + GNT
Sbjct: 661  RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720

Query: 1727 AAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQ 1548
            AA+ML+AGF P  EPHL GML+ IR +QL  LREK+RIFV SGRWLMGCLDELGVLE+GQ
Sbjct: 721  AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780

Query: 1547 CFIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLR 1368
            CFIQVS PSLE CF KHGS FS++KK  +V+KG VV+AKNPCLHPGD+RILEAVD P L 
Sbjct: 781  CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840

Query: 1367 HLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKP 1188
            HLHDCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+  E K+  
Sbjct: 841  HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900

Query: 1187 RGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKT 1008
            R V H DII+FF KNMVNE+LG ICNAHVVHAD S+YGALDE CIKLAELAA AVDFPKT
Sbjct: 901  RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960

Query: 1007 GKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE- 831
            GK+V+MPP LKPKLYPDFMGKE+ QSY S KILG+LYR+++D YN D +        SE 
Sbjct: 961  GKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSEL 1020

Query: 830  -----NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMP 666
                 +I YD++LE++GS D+I DAW  KCSYDGQL GLL QYKV  E+EVVTGHIWSMP
Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMP 1080

Query: 665  KSSSKKQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSY 486
            K +S+KQGELKERLK +Y +L+K++R+VFE M  DF+QL++ EKN+ YEQKASAWYQV+Y
Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAY 1140

Query: 485  HESWVEKSKELQKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLA 306
            H  WV KS ELQ+ D  G   +LSFAWIA DYL RIKIR R  +   +SKP++SL  YLA
Sbjct: 1141 HPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLA 1200

Query: 305  DKI 297
            D+I
Sbjct: 1201 DRI 1203


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1646 bits (4262), Expect = 0.0
 Identities = 801/1194 (67%), Positives = 967/1194 (80%), Gaps = 4/1194 (0%)
 Frame = -1

Query: 3866 DNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESV 3690
            + DM+VTQIS+GG D+ ++A  L  +LED +G V RCR+KTSSTP +SYP+FEI +T  +
Sbjct: 7    EKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKI 66

Query: 3689 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 3510
            +R  +Y+KVEPHAFVHF   ++A  AL+ +    L L  + +KVS GP+ P+ L++ RRT
Sbjct: 67   ERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRT 126

Query: 3509 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 3330
            T PFK P V +EIG+L SRDE+  GWRGP +G DFLVDPF+GTC+  FT+DTAFS +G  
Sbjct: 127  TFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMP 186

Query: 3329 RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 3150
            + AVIKCNFK+EF+ REINE+++ +D +S+++LLQL+S P +YYRTADDDIEE+VP+DLL
Sbjct: 187  KHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLL 246

Query: 3149 DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LR 2976
            DDDDPWIRTTDF  SGAIGR N+YRIS+ PR   +L+KA+ +L+ RRV  + D  +  LR
Sbjct: 247  DDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLR 306

Query: 2975 VQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEE 2796
            V+DEPDFG+PM DPFFC Q+KEG+ F+VMF+VNAV+HKGIINQHQ+SD FFDLLR Q ++
Sbjct: 307  VRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKD 366

Query: 2795 FNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAY 2616
             N+ ALKHI SY+ P +DA + L  V KWL+KNPKLL+ P+++DDIVEVRRL+ITPSKAY
Sbjct: 367  INIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAY 426

Query: 2615 CLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQK 2436
            CLPPEVELSNRVLR Y+ +SDRFLRVTFMDE MQT+N NVL YY APIV+ +T N  PQK
Sbjct: 427  CLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQK 486

Query: 2435 TTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTN 2256
            T +F+RV+ IL  GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK T+V +IK+WMGKFTN
Sbjct: 487  TRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN 546

Query: 2255 RNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEK 2076
            RNVAKCAARMGQCFSSTYATVEVP  +   +L D++RN Y FSDGIG I  DLA EVAEK
Sbjct: 547  RNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEK 605

Query: 2075 LQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTRFQP 1896
            L++    P A+QIRYAG KGVVACWP+  +G RL  R SM KF S+HT LEICSWTRFQP
Sbjct: 606  LKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQP 664

Query: 1895 GFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMM 1716
            GFLNRQIVTLLSAL V D  FW+MQE M+S+L+ +L D D+AFDVL  SC + GNTAA+M
Sbjct: 665  GFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIM 724

Query: 1715 LAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQ 1536
            L+AGF+P  EPHL+GML+ IR +Q   LREK+RIFV SGRWLMGCLDELGVLE GQCFIQ
Sbjct: 725  LSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQ 784

Query: 1535 VSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRHLHD 1356
            VS+PSLE+CF KHGS FS  +KN +VIKG+V IAKNPCLHPGDVRILEAVD PGL HL D
Sbjct: 785  VSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVD 843

Query: 1355 CLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVT 1176
            CL+FPQKG+RPH NEASGSDLDGDLYFVTW++ LIPPSK+SWPPM Y+  E K   R VT
Sbjct: 844  CLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVT 903

Query: 1175 HSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIV 996
              DII+FFTKNMVNE+LG ICNAHVVHAD S+YGALDE C+ LAE AA AVDFPKTGK+V
Sbjct: 904  SLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLV 963

Query: 995  SMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYD 816
            ++PP LKPK+YPDFMGKEE Q+Y+S KILGK+YR+I+DAYN+D   S +  + ++ + +D
Sbjct: 964  TLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFD 1023

Query: 815  RELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGEL 636
             +L I GS DFI DAW  KCSYDGQL GLLGQYKV  E+EVVTGH+WSMPK  S+KQGEL
Sbjct: 1024 EDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGEL 1083

Query: 635  KERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKE 456
             ERLKHAYS+L+K++R++FE M  DFDQL+D EKN  YEQKASAWYQV+YH +WV+KS E
Sbjct: 1084 TERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLE 1143

Query: 455  LQKVDDP-GKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
            LQ  D+  G+ V+LSFAWI  DYL RIKIR++   N  SSKPI+SL  +L D+I
Sbjct: 1144 LQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1640 bits (4247), Expect = 0.0
 Identities = 790/1192 (66%), Positives = 964/1192 (80%), Gaps = 2/1192 (0%)
 Frame = -1

Query: 3866 DNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFE-INTESV 3690
            + D +VTQIS+GG D+++ AK LMDFLE +VG+V+RCR+KTS T ++SYP FE IN+E++
Sbjct: 7    EKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFENINSENI 66

Query: 3689 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 3510
                +  +VEPHAFVHFA  +S    L    S  LML +Q +KV+ GP+  YR+++ RRT
Sbjct: 67   MESIDIRQVEPHAFVHFASPESVNWTL----SNPLMLNNQTLKVTLGPETLYRMNQRRRT 122

Query: 3509 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 3330
            TTP K+  V +EIG L  RDEF V WRGP  G DFLVDPF+G C+  FTRDTAFS +  A
Sbjct: 123  TTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFKDMA 182

Query: 3329 RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 3150
            + A++KC+FK+EF+ R+INEIK+Y D + +V+LL LAS P+++YRTADDDIE SVP+DLL
Sbjct: 183  KLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPFDLL 242

Query: 3149 DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 2970
            DDDDPWIRTTDF PSGAIGR N+YR+S+ PR+  +L+KA+ +L+ERRV      + LR+Q
Sbjct: 243  DDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKALRIQ 302

Query: 2969 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 2790
             EPDF VPM DP F    K G+ F++MF++N +VHKGI NQH +SD  FDL R Q  E N
Sbjct: 303  SEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQPREIN 362

Query: 2789 LVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCL 2610
            L ALKHI SYKRP +DA   L NVQ+WL++NPKLL+ P Q+DDI EVRRL+ITP++AYCL
Sbjct: 363  LAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYCL 422

Query: 2609 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTT 2430
            PPEVELSNRVLRKY+ +SDRFLRVTFMDE MQT+N NVLTYY APIV+E+T N + QKT 
Sbjct: 423  PPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTK 482

Query: 2429 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 2250
            +F+RV+ +L  GFYLCG++YSFLAFSSNQLRDRSAWFFAED   TV+ IK WMG+F NRN
Sbjct: 483  VFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGRFNNRN 542

Query: 2249 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 2070
            +AKCAARMGQCFSSTYATVEVP ++ N  L+++ERN YVFSDGIGMI+ DLAKEVAEKL+
Sbjct: 543  IAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKLK 602

Query: 2069 MHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 1890
            +  N P A+QIRYAG KGVVACWP   +G RL LR SM KFDS HT LEICSWTRFQPGF
Sbjct: 603  LDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGF 662

Query: 1889 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 1710
            LNRQIVTLLS L V D+ FW+MQE M+ +L+ +L D D+AF+VLT SC + GN  A+ML+
Sbjct: 663  LNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLS 722

Query: 1709 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 1530
            AGF+P +EPHL+GML+ IR +QL  LREK+RIFV  GRWLMGCLDELGVLE GQCFIQVS
Sbjct: 723  AGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVS 782

Query: 1529 TPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRHLHDCL 1350
            TPSLE+CF+KHGS FS+TK N EVIKG VVIAKNPCLHPGD+RILEAVDVPGL HL+DCL
Sbjct: 783  TPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCL 842

Query: 1349 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 1170
            +FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y+P + +  PR VT  
Sbjct: 843  VFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVTQK 902

Query: 1169 DIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 990
            DII+FF++NMVNESLG ICNAHVVHAD S YGALDEKC+ LAELAAIAVDFPKTG IV+M
Sbjct: 903  DIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTM 962

Query: 989  PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRE 810
            P  LKPK+YPDFMGKEE QSYKSTKI+G+LYR+I+D Y+ D  PS +L   S NI +D +
Sbjct: 963  PAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFDTD 1022

Query: 809  LEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKE 630
            LE+ G+ DF+ DAW  KCSYDGQL GL+ QYKV  E+EVVTG IWSMPK +S+K+G+LKE
Sbjct: 1023 LEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDLKE 1082

Query: 629  RLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKEL- 453
            RLKH+Y+ LRK++R+VFE +  DF+QL+D EKNV YE++ASAWYQ++YH  WV+KS+++ 
Sbjct: 1083 RLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKWVKKSQDMH 1142

Query: 452  QKVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
             ++++    V+LSFAWIA DYL RIKIR R + +A S+KPI+SLG YLAD+I
Sbjct: 1143 DQLEEVKNVVMLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1620 bits (4194), Expect = 0.0
 Identities = 783/1189 (65%), Positives = 959/1189 (80%), Gaps = 2/1189 (0%)
 Frame = -1

Query: 3857 MIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRK 3681
            ++  Q+S GG D+N+ A  L+ +LE++VG VWRCR+KTS TP +SYP+F + NT  V++ 
Sbjct: 10   LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKT 69

Query: 3680 TEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTP 3501
             +YEKVEPHAFVHFA+     RA++ +    L L  Q +KVS GP+NP+RL++  RT+TP
Sbjct: 70   DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129

Query: 3500 FKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPA 3321
            FK+P V +EIG L SRDEF V WRGP +G DFLVDPF+GTC+  FTRD AF+++     A
Sbjct: 130  FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189

Query: 3320 VIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDD 3141
            VIKC FK+EF+ REIN +K+Y +F+ + ILLQLAS P+++YRTADDDI   VP+D+LDDD
Sbjct: 190  VIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDD 249

Query: 3140 DPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEP 2961
            DPWIRTTDF PSGAIGR N+YRIS+  R+R +L K + +L ERRV        + +++EP
Sbjct: 250  DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP 309

Query: 2960 DFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVA 2781
            DF VPM DPFFC  Y+EG+SF++MF+VNAV+HKGIINQHQ+SD+FFDLLR Q+ E N+ A
Sbjct: 310  DFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAA 369

Query: 2780 LKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPE 2601
            LKHI+SYK P +DA + L  VQ+WL+K+P+L + P+Q+DDIVEVRRL+ITP+KAYCLPPE
Sbjct: 370  LKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPE 429

Query: 2600 VELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQ 2421
            VELSNRVLRKY+ ++DRFLRVTFMDE +QT+N NVL+Y+ APIVR++T N   QKT +F+
Sbjct: 430  VELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFK 489

Query: 2420 RVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAK 2241
            RVR IL  GFYLCGRK+SFLAFSS+QLRD SAWFF+ED  T+V  IK WMG+FT++N+AK
Sbjct: 490  RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAK 549

Query: 2240 CAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHT 2061
            CAARMGQCFSSTYATVEVPP++ + +L D++RN YVFSDGIG I+ DLA EVA+KL++  
Sbjct: 550  CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV 609

Query: 2060 NLP-CAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLN 1884
            N P CA+QIRYAG KGVVACWPA  +G R+ LR SM KF S+HTTLEICSWTRFQPGFLN
Sbjct: 610  NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLN 669

Query: 1883 RQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAG 1704
            RQI+TLLS L V D+ FW MQ+ M+S+L+ +L D D+AF+VLT +C + GNTAA+ML+AG
Sbjct: 670  RQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAG 729

Query: 1703 FRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTP 1524
            F P  EPHLRGML+ IR +QL  LREK+RIFV +GRWLMGCLDELGVLE GQCFIQVS P
Sbjct: 730  FNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEP 789

Query: 1523 SLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRHLHDCLIF 1344
             L +CF+KHGS F++TKK  +VIKG VVIAKNPCLHPGD+RILEAVD P L HL+DCL+F
Sbjct: 790  FLGNCFSKHGSRFAETKKL-QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848

Query: 1343 PQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDI 1164
            PQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSWPPM+Y   E K   R V   DI
Sbjct: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI 908

Query: 1163 IEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPP 984
            IEFF K+MVNE+LGTICNAHVVHAD S+YGALDE CI LAELAA AVDFPKTGKIV+MP 
Sbjct: 909  IEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPA 968

Query: 983  ELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELE 804
             LKPKLYPDFMGKE  QSYKS KILG+LYR+ +DAY++D   S ++     +I YD +LE
Sbjct: 969  HLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLE 1028

Query: 803  ITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERL 624
            +  S DFIADAW+ KCSYDGQL GLL QYKVN E+E+VTGHIWSMPK +S+KQGELKERL
Sbjct: 1029 VPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERL 1088

Query: 623  KHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKV 444
            KH+YSALRK++R+VFE M  D + LS+ EKN  +E+KASAWYQV+YH  WV+KS +LQ+ 
Sbjct: 1089 KHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQ 1148

Query: 443  DDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
            D     VLLSFAWIA DYL RIKIR R+M N  +SKP++ L  Y+AD+I
Sbjct: 1149 DSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1615 bits (4181), Expect = 0.0
 Identities = 787/1189 (66%), Positives = 952/1189 (80%), Gaps = 1/1189 (0%)
 Frame = -1

Query: 3860 DMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 3684
            + +VTQ+S+GG D+++ A+ LM +LE++VGLVWRCR+KTS TP +SYPNFEI +T  +QR
Sbjct: 9    ETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQR 68

Query: 3683 KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 3504
            K  Y+KVEPHAFVHFA  ++   A++ +    L   +Q++KVS GP+NPY L+  RR TT
Sbjct: 69   KDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTT 128

Query: 3503 PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 3324
            PFK+P VS+EIG L S DEF+VGWRGP +G +FLVDPF+ TC+  F+RDTAFS +G    
Sbjct: 129  PFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEH 188

Query: 3323 AVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDD 3144
            AVIKC+FK+EF+ REINE+K+Y + T  V+LLQLAS P ++YRTADDD E++VP+ LLDD
Sbjct: 189  AVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLDD 248

Query: 3143 DDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDE 2964
            DD WIRTTDF  SGAIGR NTYR+ VRPR+  +L+KA+ +L+ERRVP      +LR++DE
Sbjct: 249  DDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRDE 308

Query: 2963 PDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLV 2784
            PDFG  M D F+ + YKEG+ F++MF+VNAV+HKGI NQHQ+S +FF LLR Q+ E N+ 
Sbjct: 309  PDFGRSMSDHFY-YIYKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNVA 367

Query: 2783 ALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPP 2604
            ALKHI+SY+ P YDA   L +V  WL+KNPKL + P Q+DDIVE+RRL+ITP+KAYCL P
Sbjct: 368  ALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLLP 427

Query: 2603 EVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMF 2424
            EVELSNRVLRKY+ ++DRFLRVTFMDE MQ +N NVLTYY A IVR+VT     QKT +F
Sbjct: 428  EVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGVF 487

Query: 2423 QRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVA 2244
            +RV+ IL  GFYLCGRKYSFLAFS+NQLRDR+AWFFAED    V  I  WMGKFTNRN+A
Sbjct: 488  KRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNIA 547

Query: 2243 KCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMH 2064
            KCAARMGQCFSSTYATVEVP  Q N  L D++RN Y FSDGIG I+ DLA EVA+KL++ 
Sbjct: 548  KCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKLKLD 607

Query: 2063 TNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLN 1884
             N PCA+QIRYAG KGVVACWP   +  RL LR+SM KF S+HTTLEICSWTRFQPGFLN
Sbjct: 608  LNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFLN 667

Query: 1883 RQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAG 1704
            RQI+TLLS L V D+ FW MQ  MVS+LD +L D D AF+V+  SC + G+T A+ML+AG
Sbjct: 668  RQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAIMLSAG 727

Query: 1703 FRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTP 1524
            F+P  EPHLRGML+ +R SQL  LREKSRIF+HSGRWLMG LDELGVLE GQCFIQVS P
Sbjct: 728  FKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNP 787

Query: 1523 SLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRHLHDCLIF 1344
            SL++CF KHGS F++TKKN EVIKGLVVIAKNPCLHPGD+RILEAVD PGL HL+DCL+F
Sbjct: 788  SLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVF 847

Query: 1343 PQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDI 1164
            PQKGERPH NEASGSDLDGDLYFVTW++ LIPPSKKS  PM Y+    +E  R VTH DI
Sbjct: 848  PQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHKDI 907

Query: 1163 IEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPP 984
            IEFF+KNMVNE LG+ICNAHVVH+D S++GA DEKCI LAELAAIAVDFPKTGKIVSMP 
Sbjct: 908  IEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMPA 967

Query: 983  ELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELE 804
            +LKPKLYPDFMGKEE QSYKS KILG+LYR I+DAY++D   S +L + + +I YD +LE
Sbjct: 968  QLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYDADLE 1027

Query: 803  ITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERL 624
            ITGS D+I DAW+ KCSYDGQL+GLL QYKV  E+EVVTG IWSMPK +SKK G+LKE+L
Sbjct: 1028 ITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKEKL 1087

Query: 623  KHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKV 444
             H+Y +LRK++R++FE M  +F+QL++ EKN  YE+KASAWYQV+YH  WV+K  E QK 
Sbjct: 1088 GHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQKP 1147

Query: 443  DDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
            D     V+LSFAWIA DYL RIK+R +  EN   +KP++SL  YLAD+I
Sbjct: 1148 DGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1612 bits (4175), Expect = 0.0
 Identities = 775/1197 (64%), Positives = 957/1197 (79%), Gaps = 1/1197 (0%)
 Frame = -1

Query: 3884 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEI 3705
            M ++  +N  +VTQ+S GG   +  AK L+ +LED++GLV+RCR+KTS TP +S+PNFEI
Sbjct: 1    MEFEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI 60

Query: 3704 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 3525
            NT  V+R  +Y +VEPHAFVHF    S   A++ +    L   ++ +KVS GP+NPY L+
Sbjct: 61   NTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLN 120

Query: 3524 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 3345
              RRT TPFK+  V +EIG L  +DEF   WRGP  G DF+VDPF+GTC+  FT DTAFS
Sbjct: 121  RRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFS 180

Query: 3344 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 3165
             +G  + AVIKC+FK+EF+ REI EIK+Y D + +VILL+L S P + YRTADDDI++SV
Sbjct: 181  FKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSV 240

Query: 3164 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 2985
            P+DLLDDDDPWIRTTDF PSGAIGR N+YR+ + PR+  +L+KA+ +L+ERRV  V    
Sbjct: 241  PFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKW 300

Query: 2984 RLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 2805
              ++QDEPDFG+   +PFF  QY+EG+SF++MF+VNAV+HKG +NQHQ+SD+FF LLR Q
Sbjct: 301  PPKIQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQ 360

Query: 2804 NEEFNLVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 2625
             +E N+ ALKH+ SY+ P +DA   L  VQ WL+KNPKL++ P+++DDI EVRRL+ITP+
Sbjct: 361  PKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPT 420

Query: 2624 KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLS 2445
            KAYCLPPEVELSNRVLRKY+ ++DRFLRVTFMDE MQ +N NVL YY APIV+E+T N  
Sbjct: 421  KAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSF 480

Query: 2444 PQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 2265
             QKT +F+R R IL  GFYLCGRKY+FLAFSSNQLRDRSAWFFAE  + +V  I +WMGK
Sbjct: 481  LQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGK 540

Query: 2264 FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 2085
            F N+NVAKCAARMGQCFSSTYATVEV  S+ N  + D++RN YVFSDGIGMI+ DLA EV
Sbjct: 541  FNNKNVAKCAARMGQCFSSTYATVEVTSSEVND-IPDIKRNGYVFSDGIGMITPDLALEV 599

Query: 2084 AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTR 1905
            AEKL++  N PCA+QIR+AG KGVVACWP+  +G RL LRTSM KF+S HTTLEICSWTR
Sbjct: 600  AEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTR 659

Query: 1904 FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 1725
            +QPGFLNRQI+TLLS L VED+ FWRMQE MV +L+ +L D D+AFDVLT SC + GN A
Sbjct: 660  YQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAA 719

Query: 1724 AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 1545
            A+ML+AGF+P  EPHLRGML+ I+ +QL  LREK+RIFVHSGRWLMG LDELGVLE GQC
Sbjct: 720  AIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQC 779

Query: 1544 FIQVSTPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRH 1365
            F+QVSTP LE CFAKHGS F++ ++N +VIKG VVIAKNPCLHPGD+RILEAVD PGL H
Sbjct: 780  FVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHH 839

Query: 1364 LHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPR 1185
            L+DCL+FPQKG+RPH +EASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y+P E K + R
Sbjct: 840  LYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGR 899

Query: 1184 GVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTG 1005
             VT  DII+FF KNM NE+LG ICNAHVVHAD S YGALD  C+KLAELAA+AVDFPKTG
Sbjct: 900  PVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTG 959

Query: 1004 KIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENI 825
            KIVS+P  LKP+LYPDF+GKE+ QSYKSTKILG+LYR++RDAY++D   S +L Y   +I
Sbjct: 960  KIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDI 1019

Query: 824  FYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQ 645
             YD +LE+ G+ DF+ DAW  KCSYDGQL GL+GQYKV  E+E+VTGH+WS+PKS+SKKQ
Sbjct: 1020 PYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQ 1079

Query: 644  GELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEK 465
            GELKERL H+Y+AL+K++R++FE +  + + L+D EKN+  E+KASAWYQV+YH  WV++
Sbjct: 1080 GELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQ 1139

Query: 464  SKELQKVDDPGK-TVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
            S  LQ+ D PG   V+LSFAWIA DYL RIKI+   +E+  S+KPI+SL  YLAD+I
Sbjct: 1140 SPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1599 bits (4140), Expect = 0.0
 Identities = 763/1191 (64%), Positives = 941/1191 (79%), Gaps = 1/1191 (0%)
 Frame = -1

Query: 3866 DNDMIVTQISLGGLDKNISAKMLMDFLEDKVGLVWRCRVKTSSTPQDSYPNFEINTES-V 3690
            +ND +VTQ+S GG   +++AK L+ +LED++GLV+RCR+KTS TP +S PNFEI+  + +
Sbjct: 7    ENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAADI 66

Query: 3689 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 3510
            +   +Y KVEPHAFVHFA  +S    ++      L   +Q +K S GP+N + +++ RRT
Sbjct: 67   ETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRRRT 126

Query: 3509 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 3330
              PFK+  V +EIG L   DEF V W+GP  G DF+VDPF+GTC+  F RDTAFS +G  
Sbjct: 127  KIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKGLN 186

Query: 3329 RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 3150
            + AVI C+FK EF  REI E K Y +    V+LL+L S P + YRTADDDI++SV +DLL
Sbjct: 187  KHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFDLL 246

Query: 3149 DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 2970
            DDDDPWIRTTDF P+GAIGR N YR+ + PR+  +L+KA+ +L+ERRV  +   +  R+Q
Sbjct: 247  DDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPRIQ 306

Query: 2969 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 2790
            DEP FG PM D  F   Y++ +SF ++F+VNAV+HKGI+NQHQ+S++FFDLLR Q EE N
Sbjct: 307  DEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEEIN 366

Query: 2789 LVALKHIFSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCL 2610
            + ALKH+ SYK P +DA + L  VQ+WL++NPKL++ P+++DDI EVRRL+ITP+KAYCL
Sbjct: 367  VAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCL 426

Query: 2609 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTT 2430
            PPEVELSNRVLRKY+ ++DRFLRVTFMDE MQT+N NV+  Y APIV+E+T+N  PQKT 
Sbjct: 427  PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTK 486

Query: 2429 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 2250
            ++ R+R IL  GF+LCGRKYSFLAFSSNQLRDRSAWFFAEDK+ ++  IKNWMG+FTNRN
Sbjct: 487  VYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTNRN 546

Query: 2249 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 2070
            VAKCAARMGQCFSSTYATVEVP +Q NH+L D+ERN YVFSDGIG I+ DLA EVAEKL+
Sbjct: 547  VAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLK 606

Query: 2069 MHTNLPCAFQIRYAGYKGVVACWPAIKNGHRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 1890
            +  + P A+QIRY G KGVVACWP+  +G RL LR SM KF S+HTTLEICSWTR QPGF
Sbjct: 607  LDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGF 666

Query: 1889 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 1710
            LNRQI+TLLSAL V D+ FW MQE MVS+L  +L D D+AFDVLT SC + GN+AA+ML+
Sbjct: 667  LNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLS 726

Query: 1709 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 1530
            AGF+P  EPHLRGML+ I+ +QL  LREK+RIFV SGRWLMGCLDELGVLE GQCF+QVS
Sbjct: 727  AGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVS 786

Query: 1529 TPSLEDCFAKHGSEFSKTKKNPEVIKGLVVIAKNPCLHPGDVRILEAVDVPGLRHLHDCL 1350
            TPSLE+CFAKHGS F +T KN +VIKG VV+AKNPCLHPGD+RILEAVD PGL HLHDCL
Sbjct: 787  TPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCL 846

Query: 1349 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 1170
            +FPQKG RPH +EASGSDLDGDLYFVTWD+NLIPP KKSW PM+YEP E K   R VT  
Sbjct: 847  VFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQ 906

Query: 1169 DIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 990
            D+IEFF +NMVNE+LG ICNAHVVH+D S+YGA DE C+KLAELAA+AVDFPKTGKIV+M
Sbjct: 907  DLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTM 966

Query: 989  PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRE 810
            PP LKPKLYPDFMGK++ QSYKS KILG+LYR+I DAY++D   S +  +   ++ YD +
Sbjct: 967  PPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVKYDMD 1026

Query: 809  LEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKE 630
            LE+  + DFIADAW  KCSYD QL GL+ QYK+  E+E+VTGH+WSMPK +S+KQGEL+E
Sbjct: 1027 LEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQGELQE 1086

Query: 629  RLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQ 450
            RLKH+YSAL+K++R+ FE M   F+ L D +KN  YEQKASAWYQV+YH  WV+KS +L 
Sbjct: 1087 RLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKSLDLH 1146

Query: 449  KVDDPGKTVLLSFAWIAVDYLTRIKIRQRKMENALSSKPIDSLGWYLADKI 297
              D PG  V+LSFAWIA DYL RIKI++R++ N    KPI+ L  YLAD+I
Sbjct: 1147 GPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197