BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00001300
         (7619 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   578   e-161
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   572   e-160
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   520   e-144
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   496   e-137
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       494   e-136
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   490   e-135
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   470   e-129
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   443   e-121
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           443   e-121
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   439   e-119
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              439   e-119
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   430   e-117
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               429   e-116
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   428   e-116
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   426   e-116
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   422   e-114
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   415   e-112
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   414   e-112
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   404   e-109
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                398   e-107

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  578 bits (1491), Expect = e-161
 Identities = 353/1119 (31%), Positives = 557/1119 (49%), Gaps = 57/1119 (5%)
 Frame = -3

Query: 3684 MIIANWNIRGMQSTHKKAAVRRLITDHKIDIIGILETKFTVAKFCKFSPTFLHDWNFAHN 3505
            M+  +WN+RGM    K   ++  +  HKI +  +LET+       K       DW + +N
Sbjct: 1    MLCVSWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNN 60

Query: 3504 FNCAKNGRILLYWNTSTVDLNIISIESQVIHALVTCRITGITFHFALC--YGFNKSHHRM 3331
            ++ +   RI + W  + V++ +   + Q    L+ C I   +    +   YG +    R 
Sbjct: 61   YSHSARERIWIGWRPAWVNVTLTHTQEQ----LMVCDIQDQSHKLKMVAVYGLHTIADRK 116

Query: 3330 DLWDSLILRVPLDMPAFLCGDFNCVLDPSERVGKRVPQENEFVDFVDTCAYLTMQDVPST 3151
             LW  L+  V    P  + GDFN V   ++R+   +  + E  DF        + +  ST
Sbjct: 117  SLWSGLLQCVQQQDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESRST 176

Query: 3150 GCIFTWNDKFVS-----SKIDRTLVNSIWMEKNLFCRTEFLIRGTTSDHSPCISTLFAKV 2986
               ++W++  +      S+ID+  VN +W+        ++L  G  SDHSP +  L    
Sbjct: 177  WSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGI-SDHSPLLFNLMTGR 235

Query: 2985 PTFKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFN 2806
            P   + FKF N   +   F +T+   W+S      K + +++ L  ++  LK++      
Sbjct: 236  PQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRF-KLQAIWLNLKAVKRELKQMKTQKIG 294

Query: 2805 NLSERAEAARRQLDGLQQQCD---RDPLNRDLRMIEMEARVLSQRLDAV----ERDFLVQ 2647
               E+ +  R QL  LQ Q D    D +  D + I  + R  S   D++     R   +Q
Sbjct: 295  LAHEKVKNLRHQLQDLQSQDDFDHNDIMQTDAKSIMNDLRHWSHIEDSILQQKSRITWLQ 354

Query: 2646 RGN-------------------------DGSTTGDIKTIVADFVNYYSELFG-KSVPRPH 2545
            +G+                         DG    D   +  + + +Y +L G ++     
Sbjct: 355  QGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTLMG 414

Query: 2544 IDFGVMNAGYRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVR 2365
            +D   +  G  L+ + + +L+  V  +EI  AL  IG+DKAPG DG+ + FFK++W  ++
Sbjct: 415  VDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIK 474

Query: 2364 GDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILTNR 2185
             ++ A + EFF+   + R +N  +V+L+PK  H   V +FRPIAC  V+YKII+K+LTNR
Sbjct: 475  QEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNR 534

Query: 2184 MSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDCIS 2005
            M  ++ ++V+ AQ+ FI GR I DN  LA ELI+ Y R   ++ RC++K+D+RKAYD + 
Sbjct: 535  MKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTR-KHMSPRCIMKVDIRKAYDSVE 593

Query: 2004 WDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFL 1825
            W FL+ +LY   F   F+ WIM CV++ ++S+ +NG      + ++GLRQGDPMSP LF 
Sbjct: 594  WSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFA 653

Query: 1824 LCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEF 1645
            LCM+YLSR L     SP+F++HPKC+R NITHL FADDLL+F R D SS++ +     +F
Sbjct: 654  LCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKF 713

Query: 1644 TTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSP 1465
            +  SGL  +  KS ++  GV     +++ D      G LP +YLG+PL S+ LT     P
Sbjct: 714  SHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKP 773

Query: 1464 LLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKFLW 1285
            L+  I++    W    LS AGRL+L++S+L  ++ YW    PL   VI  + K+ RKFLW
Sbjct: 774  LVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLW 833

Query: 1284 GG-----NYCPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWVHG 1120
             G        PVAW  +  P+  GG  + ++  WN+A   K LW I  K D LW++W+H 
Sbjct: 834  TGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHS 893

Query: 1119 EYIRDRTVWDVSFPKRDAPHFKNILLIRDQILHDCGGNLTDAQSKLASW---FAGDR-GT 952
             YI+ + +  V+   +     + I+  RD +            S +  W     GD+   
Sbjct: 894  YYIKRQDILTVNISNQTTWILRKIVKARDHL------------SNIGDWDEICIGDKFSM 941

Query: 951  KEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRLKFSDIPRQC---- 784
            K+AY+     GE+  W + I  +Y  PK    LW+ +  RL T DR+    +  QC    
Sbjct: 942  KKAYKKISENGERVRWRRLICNNYATPKSKFILWMMLHERLPTVDRISRWGV--QCDLNY 999

Query: 783  MLCNAAEETNDHLFFQCPRTVEIWSGICSWLKIRQRISTVSSGI--RRFQQDKAGSGIVR 610
             LC    ET  HLFF C  +  +WS IC  ++        +SG+  +       G    +
Sbjct: 1000 RLCRNDGETIQHLFFSCSYSAGVWSKICYIMRF------PNSGVSHQEIISSVCGQARKK 1053

Query: 609  KAKWIALGAT--VSYIWYARNSLYTEGKSPVSSAIIKEI 499
            K K I +  T  V  IW  RN     G++   + ++++I
Sbjct: 1054 KGKLIVMLYTEFVYAIWKQRNKRTFTGENKDENEVLRKI 1092


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  572 bits (1475), Expect = e-160
 Identities = 360/1109 (32%), Positives = 549/1109 (49%), Gaps = 47/1109 (4%)
 Frame = -3

Query: 3684 MIIANWNIRGMQSTHKKAAVRRLITDHKIDIIGILETKFTVAKFCKFSPTFLHDWNFAHN 3505
            M I  WN+RG+    K   V+  +   KI +  + ET+       K    F + W++ +N
Sbjct: 1    MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINN 60

Query: 3504 FNCAKNGRILLYWNTSTVDLNIISIESQVIHALVTCRITGITFHFALCYGFNKSHHRMDL 3325
            + C+  GRI + W  + V++N++S+  QVI   V        F  A  YG +    R  L
Sbjct: 61   YACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVL 120

Query: 3324 WDSLILRVPL-DMPAFLCGDFNCVLDPSERVGKRVPQENEFVDFVDTCAYLTMQDVPSTG 3148
            W+ L   V +   P  L GD+N V    +R+      E E  D         + + P+TG
Sbjct: 121  WEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTTG 180

Query: 3147 CIFTWNDKFV-----SSKIDRTLVNSIWMEKNLFCRTEFLIRGTTSDHSPCISTLFAKVP 2983
              ++WN+K +     SS+ID++ VN  W+ +      E+   G  SDHSP I  L  +  
Sbjct: 181  LFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGI-SDHSPLIFNLATQHD 239

Query: 2982 TFKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFNN 2803
               R FKF N   D   F + + + W S      K + +++RL  ++  LK  +   F+ 
Sbjct: 240  EGGRPFKFLNFLADQNGFVEVVKEAWGSANHRF-KMKNIWVRLQAVKRALKSFHSKKFSK 298

Query: 2802 LSERAEAARRQLDGLQ-----------QQCDRDPLNRDLRMIEMEARVLSQR-------- 2680
               + E  RR+L  +Q           Q+ ++D + +  +   ++  +L Q+        
Sbjct: 299  AHCQVEELRRKLAAVQALPEVSQVSELQEEEKDLIAQLRKWSTIDESILKQKSRIQWLSL 358

Query: 2679 --------LDAVE----RDFLVQRGND-GSTTGDIKTIVADFVNYYSELFGKSVPRPH-I 2542
                      A++    R+ +V   ND G    +   I  +  N+Y  L G S  +   I
Sbjct: 359  GDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEAI 418

Query: 2541 DFGVMNAGYRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVRG 2362
            D  V+  G +L+    A LV P+TI EI  AL DI D KAPG DG+ S FFK++W +++ 
Sbjct: 419  DLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQ 478

Query: 2361 DVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILTNRM 2182
            ++   + +FF  G + + +N T V+LIPK        D+RPIAC + +YKII+KILT R+
Sbjct: 479  EIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRL 538

Query: 2181 SPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDCISW 2002
              ++ ++V  AQ  FI  R I DN  LA ELI+ Y R   ++ RC++K+D+RKAYD + W
Sbjct: 539  QAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRH-VSPRCVIKVDIRKAYDSVEW 597

Query: 2001 DFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLL 1822
             FL+ +L  L F   FI WIM CV + ++SI +NG        Q+GLRQGDP+SP LF L
Sbjct: 598  VFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFAL 657

Query: 1821 CMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEFT 1642
             M+YLSR +    + P F++HPKC+R  +THL FADDLL+F R D SS+  +    + F+
Sbjct: 658  SMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFS 717

Query: 1641 TTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSPL 1462
              SGL  +  KS ++ GGV   E +Q+ D      GSLP +YLG+PLAS+ L  +   PL
Sbjct: 718  KASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPL 777

Query: 1461 LAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKFLWG 1282
            + +I++    W    LS AGRL+LV+++L  ++ YW Q  PLP  +I  +    RKFLW 
Sbjct: 778  IDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWT 837

Query: 1281 GNY-----CPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWVHGE 1117
            G        PVAW  +  P+  GGL + ++  WNKA   K LW I  K D LW++WV+  
Sbjct: 838  GTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAY 897

Query: 1116 YIRDRTVWDVSFPKRDAPHFKNILLIRDQILHDCGGNLTDAQSKLASWFAGDRGTKEAYE 937
            YI+ + + +V+     +   + I   R+ +    G          +         K+ Y+
Sbjct: 898  YIKRQNIENVTVSSNTSWILRKIFESRELLTRTGGWEAVSNHMNFS--------IKKTYK 949

Query: 936  HFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRLK--FSDIPRQCMLCNAAE 763
              +   E   W + I  +   PK    LWLAM  RL T +R+     D+   C +C    
Sbjct: 950  LLQEDYENVVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCKMCGNEI 1009

Query: 762  ETNDHLFFQCPRTVEIWSGICSWLKIRQRISTVSSGIRRFQQDKAGSGIVRKAKWIALGA 583
            ET  HLFF C  + EIW  +  +L ++ +    +   +     KA S   R   ++ +  
Sbjct: 1010 ETIQHLFFNCIYSKEIWGKVLLYLNLQPQADAQAK--KELAIKKARSTKDRNKLYVMMFT 1067

Query: 582  TVSY-IWYARNSLYTEGKSPVSSAIIKEI 499
               Y IW  RN+    G     +  +K I
Sbjct: 1068 ESVYAIWLLRNAKVFRGIEINQNQAVKSI 1096


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  520 bits (1339), Expect = e-144
 Identities = 358/1077 (33%), Positives = 521/1077 (48%), Gaps = 48/1077 (4%)
 Frame = -3

Query: 3585 ILETKFTVAKFCKFSPTFLHDWNFAHNFNCAKNGRILLYWNTSTVDLNIISIESQVIHAL 3406
            +LET+   +K          DW    N+   + GRI + W++S V L +I   SQ+I  L
Sbjct: 336  VLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSSS-VQLQVIFKSSQMIVCL 394

Query: 3405 VTCRITGITFHFALCYGFNKSHHRMDLW-------DSLILRVPLDMPAFLCGDFNCVLDP 3247
            V      + F  +  Y  N    R  LW       +S+  R   + P  L GDFN  L  
Sbjct: 395  VRVEHYDVEFICSFIYASNFVEERKKLWQDLHNLQNSVAFR---NKPWLLFGDFNETLKM 451

Query: 3246 SERVGKRV-PQENEFV-DFVDTCAYLTMQDVPSTGCIFTWNDK----FVSSKIDRTLVNS 3085
             E     V P     + DF     Y +++D+ + G +FTW +K     +  K+DR L+N 
Sbjct: 452  EEHSSYAVSPMVTPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKRNEGLICKKLDRVLLNP 511

Query: 3084 IWMEK--NLFCRTEFLIRGTTSDHSPCISTLFAKVPTFKREFKFCNAWMDHPSFRQTLMD 2911
             +     + +C    +  G  SDH      L + +   K  FKF N    HP F   + D
Sbjct: 512  EYNSAYPHSYC---IMDSGGCSDHLRGRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKVED 568

Query: 2910 YWDSTTTTGGKQEQLFI---RLLKLRPILKELNKTHFNNLSERA-----EAARRQLDGLQ 2755
            +W +TT        LF    +L +L+PILK+L++ + ++L+ RA     E  R Q   L 
Sbjct: 569  FWKNTTELFPSTSTLFRFSKKLKELKPILKDLSRNNLSDLTRRATYAYEELCRCQTKSLT 628

Query: 2754 QQCDRDPLNRDLRMIEMEARVLSQRLDAVERDFLVQRGNDGSTTGDIKTIVADFVNYYSE 2575
                 D ++  L     E       L+A+  + +  +G       DIK    + V ++S+
Sbjct: 629  TLNPHDIVDESLAFERWEKE--RHLLNAIH-EVMDPQGTRPPNQDDIKI---EAVRFFSD 682

Query: 2574 LFGKSVPRPHIDFGVMNAG----YRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDG 2407
            L   S P       V        YR +  +Q  LV+ +T +E+    + I  +K+PGPDG
Sbjct: 683  LLS-SQPSDFTGISVDELKGILQYRYSLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDG 741

Query: 2406 YPSAFFKRNWAIVRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACT 2227
            Y   FF+  W+++  +V  A+  FF+ G + + LN TI++LIPK T+   + D+RPI+C 
Sbjct: 742  YTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCC 801

Query: 2226 NVVYKIITKILTNRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARC 2047
            NV+YK I+K+L NR+  LL + ++P Q+AFI  R + +N  LA EL+K Y +  G++ RC
Sbjct: 802  NVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHK-DGLSPRC 860

Query: 2046 MVKIDLRKAYDCISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQR 1867
             +KIDL KA+D + W FL   L  L+    FI+WI  C+++ +FS+ +NG          
Sbjct: 861  AMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVNG---------- 910

Query: 1866 GLRQGDPMSPSLFLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGD 1687
             LRQG  +SP LF++CM+ LS +L        F YHP+C    +THL FADD+++F  G 
Sbjct: 911  -LRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGS 969

Query: 1686 PSSMEVLKNTLDEFTTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGL 1507
              S+E +     +F   SGL I+  KS +F+  +       IL  F F  GSLPV+YLGL
Sbjct: 970  AHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGL 1029

Query: 1506 PLASRTLTCNDYSPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPAT 1327
            PL ++ +T  D  PLL +I S +  W N  LS AGRL+L+ SV+  +  +W+ A  LP  
Sbjct: 1030 PLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRA 1089

Query: 1326 VIDRITKLLRKFLWGG-----NYCPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNI 1162
             I  I ++   FLW G     +   VAW  VC P+ EGGLGLR L   NK    K +W +
Sbjct: 1090 CIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRL 1149

Query: 1161 HAKSDSLWIQWVHGEYIRDRTVWDVSFPKRDAPHFKNILLIRDQILHD---------CGG 1009
             +   SLW+ W+    I  RTV +     R   H       RD IL+D         C G
Sbjct: 1150 VSAKHSLWVNWIQNNLI--RTVAEALSSHRRRSH-------RDDILNDIEEELEKLLCRG 1200

Query: 1008 NLTDAQSKLASWFAGDRGTK----EAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAM 841
              T+    L     G    K    E +   R +G  K WHKAIW S   PKF+   WLA 
Sbjct: 1201 ICTEQDRSLCRSIGGQFKAKFFSPEIWHQIREQGLVKQWHKAIWFSGATPKFTFISWLAA 1260

Query: 840  RGRLKTFDRLKF--SDIPRQCMLCNAAEETNDHLFFQCPRTVEIWSGICSWLKIRQRIST 667
              RL T D++      I   C+LCN + E+ DHLFF C  +  IW  +   L +  R +T
Sbjct: 1261 HDRLTTGDKMASWNRGISSVCVLCNISAESRDHLFFSCNFSSHIWDRLTRRL-LLCRYTT 1319

Query: 666  VSSGIRRFQQDKAGSGIVRKAKWIALGATVSYIWYARNSLYTEGKSPV-SSAIIKEI 499
                +      +  SG  R        AT+  +W  RN     G  P+ S  IIK I
Sbjct: 1320 NFPALLLLLSGQDFSGTKRFLLRYVFQATIHTLWRERNK-RRHGDLPIPSDHIIKFI 1375


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  496 bits (1278), Expect = e-137
 Identities = 304/935 (32%), Positives = 470/935 (50%), Gaps = 56/935 (5%)
 Frame = -3

Query: 3672 NWNIRGMQSTHKKAAVRRLITDHKIDIIGILETKFTVAKFCKFSPTFLHDWNFAHNFNCA 3493
            +WN+RG  ++ ++   R+     K     ILET+    +  +   +    W    N+  A
Sbjct: 6    SWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFA 65

Query: 3492 KNGRILLYWNTSTVDLNIISIESQVIHALVTCRITGITFHFALCYGFNKSHHRMDLWDSL 3313
              GRI + W+ + V++ ++S   Q I   V        F     Y  N  + R  LW  L
Sbjct: 66   ALGRIWVVWDPA-VEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSEL 124

Query: 3312 IL----RVPLDMPAFLCGDFNCVLDPSERV--GKRVPQENEFVDFVDTCAYLTMQDVPST 3151
             L    +   D P  + GDFN  LDP +    G R+ +  E  +F +      + D+P  
Sbjct: 125  ELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGME--EFRECLLTSNISDLPFR 182

Query: 3150 GCIFTW----NDKFVSSKIDRTLVNSIWM-----EKNLFCRTEFLIRGTTSDHSPCISTL 2998
            G  +TW     +  ++ KIDR LVN  W+         FC  EF      SDH P    +
Sbjct: 183  GNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEF------SDHCPSCVNI 236

Query: 2997 FAKVPTFKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNK 2818
              +     + FK  N  M HP F + +   WD     G     L  +   L+  ++  N+
Sbjct: 237  SNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNR 296

Query: 2817 THFNNLSERAEAARRQLDGLQQQCDRDPLNRDLRMIEMEARVLSQRLDAVERDFLVQRGN 2638
             H++ L +R   A + L   Q      P +  L  +E EA      L   E  FL Q+  
Sbjct: 297  EHYSGLEKRVVQAAQNLKTCQNNLLAAPSSY-LAGLEKEAHRSWAELALAEERFLCQKSR 355

Query: 2637 -------DGSTTGDIKTIVA--------------------------DFVNYYSELFGKS- 2560
                   D +TT   + + A                            V+++ ELFG S 
Sbjct: 356  VLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSS 415

Query: 2559 --VPRPHIDFGVMNAGYRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFK 2386
              +    I        ++  E  +  L + V+ ++IK   + +  +K+PGPDGY S FFK
Sbjct: 416  HLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFK 475

Query: 2385 RNWAIVRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKII 2206
            + W+IV   ++AAV EFF  G +L   N T V+++PK  +   + +FRPI+C N +YK+I
Sbjct: 476  KTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVI 535

Query: 2205 TKILTNRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLR 2026
            +K+L  R+  +L   +SP+Q+AF+KGR +T+N  LA EL++ + + + I++R ++K+DLR
Sbjct: 536  SKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQAN-ISSRGVLKVDLR 594

Query: 2025 KAYDCISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDP 1846
            KA+D + W F+ E L   N  P F+ WI  C+TS +FSI ++G   G+ +G +GLRQGDP
Sbjct: 595  KAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDP 654

Query: 1845 MSPSLFLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVL 1666
            +SPSLF++ M+ LSRLL  +    +  YHPK     I+ LAFADDL++F  G  SS+  +
Sbjct: 655  LSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGI 714

Query: 1665 KNTLDEFTTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTL 1486
            K+ L+ F   SGL +N  KS V+  G+   +K+  L  FGF+ G+ P +YLGLPL  R L
Sbjct: 715  KSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTL-AFGFVNGTFPFRYLGLPLLHRKL 773

Query: 1485 TCNDYSPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITK 1306
              +DYS L+ +I++  + W+   LS AGRL+L+ SV+     +WL +  LP   +  I +
Sbjct: 774  RRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQ 833

Query: 1305 LLRKFLWGGNY-----CPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSL 1141
            +  +FLWG +        V+W   CLP+ EGGLGLR+   WNK L+ + +W + A+ DSL
Sbjct: 834  MCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSL 893

Query: 1140 WIQWVHGEYIRDRTVWDVSFPKRDAPHFKNILLIR 1036
            W+ W H   +R    W+       +  +K IL +R
Sbjct: 894  WVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLR 928



 Score = 60.8 bits (146), Expect = 1e-05
 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 3/159 (1%)
 Frame = -3

Query: 954  TKEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRLKF--SDIPRQCM 781
            +K  +E  R +   K W  A+W     PK++   W+A   RL    R     ++ P  C 
Sbjct: 1035 SKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCC 1094

Query: 780  LCNAAEETNDHLFFQCPRTVEIWSGICSWLKIRQRISTVSSGIRRFQQDKAG-SGIVRKA 604
            +C    ET DHLF  C     IW  + +     Q        I     ++   SG ++K 
Sbjct: 1095 VCQRETETRDHLFIHCTLGSLIWQQVLARFGRSQMFREWKDIIEWMLSNQGSFSGTLKK- 1153

Query: 603  KWIALGATVSYIWYARNSLYTEGKSPVSSAIIKEIKTDV 487
              +A+   + +IW  RNS      S   +AI K+I   +
Sbjct: 1154 --LAVQTAIFHIWKERNSRLHSAMSASHTAIFKQIDRSI 1190


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  494 bits (1271), Expect = e-136
 Identities = 311/931 (33%), Positives = 476/931 (51%), Gaps = 53/931 (5%)
 Frame = -3

Query: 3669 WNIRGMQSTHKKAAVRRLITDHKIDIIGILETKFTVAKFCKFSPTFLHDWNFAHNFNCAK 3490
            WNIRG  +   ++  ++ +  +K    G++ET     K  KF    L  W+F  N+  + 
Sbjct: 8    WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSD 67

Query: 3489 NGRILLYWNTSTVDLNIISIESQVIHALVTCRITGITFHFALCYGFNKSHHRMDLWDSLI 3310
             G+I + W+ S V + +++   Q+I   V    +      ++ Y  N+   R +LW  ++
Sbjct: 68   LGKIWVMWDPS-VQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIEIV 126

Query: 3309 LRVPL----DMPAFLCGDFNCVLDPSERVGK-RVPQENEFVDFVDTCAYLTMQDVPSTGC 3145
              V      D P  + GDFN VL+P E      +  +    DF D      + D+   G 
Sbjct: 127  NMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKGN 186

Query: 3144 IFTWNDKF----VSSKIDRTLVNSIWMEKNLFCRTEFLIRGTT--SDHSPCISTLFAKVP 2983
             FTW +K     V+ KIDR LVN  W   N    +   I G+   SDH  C   L     
Sbjct: 187  TFTWWNKSHTTPVAKKIDRILVNDSW---NALFPSSLGIFGSLDFSDHVSCGVVLEETSI 243

Query: 2982 TFKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFNN 2803
              KR FKF N  + +  F   + D W +    G    ++  +L  L+  +K+ ++ +++ 
Sbjct: 244  KAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSE 303

Query: 2802 LSERAEAARRQLDGLQQQ--CDRDPLNRDLRMIEMEARVLSQRLDAVERDFLVQRGN--- 2638
            L +R + A   L G Q +   D  P+N      E+EA      L A E  F  Q+     
Sbjct: 304  LEKRTKEAHDFLIGCQDRTLADPTPINASF---ELEAERKWHILTAAEESFFRQKSRISW 360

Query: 2637 ----DGSTT--------------------GDIKTI-----VADF-VNYYSELFGKSVPRP 2548
                DG+T                     G+ K +     + D   +Y+  L G  V   
Sbjct: 361  FAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPY 420

Query: 2547 HIDFGVMNA--GYRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWA 2374
             ++   MN    YR +      L S  +  +I+ AL+ +  +K+ GPDG+ + FF  +W+
Sbjct: 421  LMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWS 480

Query: 2373 IVRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKIL 2194
            IV  +V  A+ EFFS G +L+  N T + LIPK  +    +DFRPI+C N +YK+I ++L
Sbjct: 481  IVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLL 540

Query: 2193 TNRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYD 2014
            T+R+  LL  ++S AQ+AF+ GR + +N  LA +L+  Y   S I+ R M+K+DL+KA+D
Sbjct: 541  TDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYN-WSNISPRGMLKVDLKKAFD 599

Query: 2013 CISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPS 1834
             + W+F+   L  L     FI WI  C+++PTF+++INGG  GF +  +GLRQGDP+SP 
Sbjct: 600  SVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPY 659

Query: 1833 LFLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTL 1654
            LF+L M+  S LLH+R +S    YHPK    +I+HL FADD+++F  G   S+  +  TL
Sbjct: 660  LFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETL 719

Query: 1653 DEFTTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCND 1474
            D+F + SGL +N+ KS ++L G+   E       +GF  G+LP++YLGLPL +R L   +
Sbjct: 720  DDFASWSGLKVNKDKSHLYLAGLNQLESNANA-AYGFPIGTLPIRYLGLPLMNRKLRIAE 778

Query: 1473 YSPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRK 1294
            Y PLL +I++    W N  LS AGR++L+ SV+ G   +W+    LP   I RI  L  +
Sbjct: 779  YEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSR 838

Query: 1293 FLWGGNY-----CPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQW 1129
            FLW GN        V+W  +CLP+ EGGLGLR L  WNK L  + +W +    DSLW  W
Sbjct: 839  FLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADW 898

Query: 1128 VHGEYIRDRTVWDVSFPKRDAPHFKNILLIR 1036
             H  ++   + W V   + D+  +K +L +R
Sbjct: 899  QHLHHLSRGSFWAVEGGQSDSWTWKRLLSLR 929


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  490 bits (1262), Expect = e-135
 Identities = 311/923 (33%), Positives = 462/923 (50%), Gaps = 62/923 (6%)
 Frame = -3

Query: 3669 WNIRGMQSTHKKAAVRRLITDHKIDIIGILETKFTVAKFCKFSPTFLHDWNFAHNFNCAK 3490
            WN+RG+  + K + +++ I ++      ++ET+   +K  +       DW+   N+   +
Sbjct: 6    WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 3489 NGRILLYWNTSTVDLNIISIESQVIHALVTCRITGITFHFALCYGFNKSHHRMDLW---- 3322
             GRI + W  + V L+ I    Q++   V        F  +  Y  N    R  LW    
Sbjct: 66   RGRIWVLWRKN-VRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124

Query: 3321 ---DSLILRVPLDMPAFLCGDFNCVLDPSERVGKRV-PQENEFV-DFVDTCAYLTMQDVP 3157
               DS I+R     P  L GDFN  LD +E     V P     + DF     Y ++ D+ 
Sbjct: 125  DHYDSPIIR---HKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVINYCSLTDMA 181

Query: 3156 STGCIFTWNDK----FVSSKIDRTLVNSIWMEKNLFCRTEFLIR-GTTSDHSPCISTLFA 2992
            + G +FTW +K     +  K+DR L+N  W +   F ++  +   G  SDH  C  +L +
Sbjct: 182  AQGPLFTWCNKREHGLIMKKLDRVLINDCWNQT--FSQSYSVFEAGGCSDHLRCRISLNS 239

Query: 2991 ----KVPTFKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFI---RLLKLRPIL 2833
                KV   K  FKF NA  D   F+  +  YW  T         LF     L  L+P +
Sbjct: 240  EAGNKVQGLK-PFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKI 298

Query: 2832 KELNKTHFNNLSERAEAARRQLDGLQQQCDRDPLNRDLRMIEMEARVLSQRLDAVERDFL 2653
            + + +    NLS++A  A + L   Q     +P +  +   E  A     R+  +E  +L
Sbjct: 299  RSMARDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEE-ENAAYSRWDRVAILEEKYL 357

Query: 2652 VQRG---------------------------------NDG--STTGD-IKTIVADFVNYY 2581
             Q+                                  NDG   T GD IK     F   +
Sbjct: 358  KQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREF 417

Query: 2580 SELFGKSVPRPHIDFGVMNAGYRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDGYP 2401
             +L         I         R ++ DQ +L+ PVT  EI+  L+ +  DK+PGPDGY 
Sbjct: 418  LQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYT 477

Query: 2400 SAFFKRNWAIVRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNV 2221
            S FFK  W I+  +   AV  FF+KG + + +N TI++LIPK T    + D+RPI+C NV
Sbjct: 478  SEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNV 537

Query: 2220 VYKIITKILTNRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMV 2041
            +YK+I+KI+ NR+  +L K ++  Q+AF+K R + +N  LA EL+K Y + + I+ RC +
Sbjct: 538  LYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDT-ISTRCAI 596

Query: 2040 KIDLRKAYDCISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGL 1861
            KID+ KA+D + W FL  V   L F   FI+WI  C+T+ +FS+ +NG   G+ +  RGL
Sbjct: 597  KIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGL 656

Query: 1860 RQGDPMSPSLFLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPS 1681
            RQG  +SP LF++CMD LS++L     + +F YHPKC    +THL+FADDL++   G   
Sbjct: 657  RQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIR 716

Query: 1680 SMEVLKNTLDEFTTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPL 1501
            S+E +    DEF   SGL I+  KS V+L G+    + ++ D F F  G LPV+YLGLPL
Sbjct: 717  SIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPL 776

Query: 1500 ASRTLTCNDYSPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVI 1321
             ++ L+  D  PLL Q+   +  W++  LS AGRL L+ SVL  +  +WL A  LP   I
Sbjct: 777  ITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCI 836

Query: 1320 DRITKLLRKFLWGG-----NYCPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHA 1156
              + K+   FLW G     N   ++W  VC P+ EGGLGLR L   N     K +W I +
Sbjct: 837  RELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVS 896

Query: 1155 KSDSLWIQWVHGEYIRDRTVWDV 1087
             S+SLW++WV    +R+ + W+V
Sbjct: 897  HSNSLWVKWVDQHLLRNASFWEV 919



 Score = 77.4 bits (189), Expect = 1e-10
 Identities = 54/197 (27%), Positives = 81/197 (41%), Gaps = 11/197 (5%)
 Frame = -3

Query: 1110 RDRTVWDVSFPKRDAPHFKNILLIRDQILHDCGGNLTDAQSKL-----ASWFAGDRGTKE 946
            R  TV +    +R   H  ++  + +  L       T+ + K+     +  F     T++
Sbjct: 983  RRMTVEEAWTNRRQRRHRNDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRD 1042

Query: 945  AYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRL--KFSDIPRQCMLCN 772
             + H R+   +  WHK IW S+  PK+S   WLA  GRL T DR+    + I   C+ C 
Sbjct: 1043 TWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQ 1102

Query: 771  AAEETNDHLFFQCPRTVEIWSGICSWLKIRQRISTVSSGIRRFQQDKAGSGIVRKAKWI- 595
               ET DHLFF C  T  IW  +   +   Q  S   S I      +       + +W  
Sbjct: 1103 GTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSIIEAITNSQH-----HRVEWFL 1157

Query: 594  ---ALGATVSYIWYARN 553
                  AT+  +W  RN
Sbjct: 1158 RRYVFQATIYIVWRERN 1174


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  470 bits (1210), Expect = e-129
 Identities = 290/900 (32%), Positives = 445/900 (49%), Gaps = 52/900 (5%)
 Frame = -3

Query: 3669 WNIRGMQSTHKKAAVRRLITDHKIDIIGILETKFTVAKFCKFSPTFLHDWNFAHNFNCAK 3490
            WNIRG+ S +++  VR  I  + + +   LET            + L  W    N+ C++
Sbjct: 6    WNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSE 65

Query: 3489 NGRILLYWNTSTVDLNIISIESQVIHALVTCRITGITFHFALCYGFNKSHHRMDLWDSLI 3310
             GRI + W+ S + + +     Q++   +       +F  A  YG N    R  LW+ ++
Sbjct: 66   LGRIWIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDIL 124

Query: 3309 L---RVPLDM-PAFLCGDFNCVLDPSER--VGKRVPQENEFVDFVDTCAYLTMQDVPSTG 3148
            +     PL + P  L GDFN +   SE   + + +       D         + D+PS G
Sbjct: 125  VLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRG 184

Query: 3147 CIFTWN----DKFVSSKIDRTLVNSIWMEKNLFCRTEFLIRGTTSDHSPCISTLFAKVPT 2980
              FTW+    D  +  K+DR L N  W          F   G  SDH+PCI  +  + P 
Sbjct: 185  VFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILIDNQPPP 243

Query: 2979 FKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFNNL 2800
             K+ FK+ +    HPS+   L   W++ T  G     L   L   +   + LN+  F+N+
Sbjct: 244  SKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNI 303

Query: 2799 SERAEAARRQLDGLQQQCDRDPLN------------------------------RDLRMI 2710
             +R   +  +L+ +Q +    P +                              R L   
Sbjct: 304  QQRTAQSLTRLEDIQVELLTSPSDTLFRREHVARKQWIFFAAALESFFRQKSRIRWLHEG 363

Query: 2709 EMEARVLSQRLDAVERDFLVQ--RGNDGSTTGDIKTIVADFVNYYSELFGKSVPRPHID- 2539
            +   R   + + A +   L++  RG+DG    ++  I    + YYS L G  +P  ++  
Sbjct: 364  DANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLG--IPSENVTP 421

Query: 2538 FGVMNAGYRLTEEDQAALVSPVTI----SEIKGALYDIGDDKAPGPDGYPSAFFKRNWAI 2371
            F V      L     + L S +T      EI   L+ +  +KAPGPDG+P  FF   WAI
Sbjct: 422  FSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAI 481

Query: 2370 VRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILT 2191
            V+  V+AA+ EFF  G + R  N T ++LIPK T    +  FRP+AC   +YK+IT+I++
Sbjct: 482  VKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIIS 541

Query: 2190 NRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDC 2011
             R+   + + V   Q  FIKGR + +N  LA EL+  +E   G T R  +++D+ KAYD 
Sbjct: 542  RRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFE-ADGETTRGCLQVDISKAYDN 600

Query: 2010 ISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSL 1831
            ++W+FL  +L  L+    FI+WI  C++S ++SIA NG   GF +G++G+RQGDPMS  L
Sbjct: 601  VNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHL 660

Query: 1830 FLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLD 1651
            F+L MD LS+ L     +  F+ HP C    ITHL+FADD+L+F  G  SS+  +   LD
Sbjct: 661  FVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILD 720

Query: 1650 EFTTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDY 1471
            +F   SGL IN+ K+ + L G      + + D  G   GSLPV+YLG+PL S+ +   DY
Sbjct: 721  DFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDY 780

Query: 1470 SPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKF 1291
             PL+ +I+S    W+  HLS AGRL+L++SV+     +W      P   + ++ ++   F
Sbjct: 781  QPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQKLEQMCNAF 840

Query: 1290 LWGG-----NYCPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWV 1126
            LW G         ++W  VC P+  GGLGL+ LS+WN+ L  K +W +   + SLW+ WV
Sbjct: 841  LWSGAPNSARGAKISWNIVCSPKEAGGLGLKRLSSWNRILALKLIWLLFTSAGSLWVSWV 900


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  443 bits (1140), Expect = e-121
 Identities = 270/794 (34%), Positives = 409/794 (51%), Gaps = 46/794 (5%)
 Frame = -3

Query: 3279 LCGDFNCVLDPSERVGK-RVPQENEFVDFVDTCAYLTMQDVPSTGCIFTWNDKF----VS 3115
            + GDFN VL P E      +  +    DF    + + + D+   G  FTW +K     ++
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 3114 SKIDRTLVNSIWMEKNLFCRTEFLIRGTT-SDHSPCISTLFAKVPTFKREFKFCNAWMDH 2938
             K+DR L N  W   NL+  +  L      SDH  C   L A   + KR FKF N  + +
Sbjct: 61   KKLDRILANDSWC--NLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKN 118

Query: 2937 PSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFNNLSERAEAARRQLDGL 2758
              F   +MD W ST   G    ++  +L  ++  +K+ ++ +++ +  R + A   L   
Sbjct: 119  EDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITC 178

Query: 2757 QQQCDRDPLNRDLRMIEMEARVLSQRLDAVERDFLVQRGN-DGSTTGDIKT--------- 2608
            Q     +P   +  + E+EA+     L   E  F  QR        GD  T         
Sbjct: 179  QNLTLANPSVSNAAL-ELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDS 237

Query: 2607 -----------------------IVADFVNYYSELFGKSVPRPHIDFGVMNA--GYRLTE 2503
                                   I+   V YY  L G       ++   MN    YR ++
Sbjct: 238  RKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQ 297

Query: 2502 EDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVRGDVLAAVNEFFSKG 2323
            +  + L    T  EIK A   +  +K  GPDGY   FF+  W+I+  +VLAA++EFF  G
Sbjct: 298  DQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSG 357

Query: 2322 LILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILTNRMSPLLHKLVSPAQA 2143
             +L+  N T + LIPKT++  T+++FRPI+C N +YK+I+K+LT+R+  LL  ++  +Q+
Sbjct: 358  QLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQS 417

Query: 2142 AFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDCISWDFLKEVLYGLNFH 1963
            AF+ GR + +N  LA E++  Y R   I+ R M+K+DL+KA+D + W+F+   L  L   
Sbjct: 418  AFLPGRSLAENVLLATEMVHGYNR-LNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIP 476

Query: 1962 PCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRLLHTRT 1783
              +I WI  C+T+P+F+I++NG   GF R  +GLRQGDP+SP LF+L M+  S+LL++R 
Sbjct: 477  ERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRY 536

Query: 1782 QSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEFTTTSGLTINQSKSL 1603
             S    YHPK    +I+HL FADD+++F  G  SSM  +  TLD+F   SGL +N+ KS 
Sbjct: 537  DSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQ 596

Query: 1602 VFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSPLLAQISSFVHRWSN 1423
            +F  G+   E+      +GF  G+ P++YLGLPL  R L   DY PLL ++S+ +  W +
Sbjct: 597  LFQAGLDLSERITSA-AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVS 655

Query: 1422 IHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKFLWGGNY-----CPVAW 1258
              LS AGR +L+ SV+ G+  +W+    LP   I +I  L  KFLW G+        V+W
Sbjct: 656  KALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSW 715

Query: 1257 TQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWVHGEYIRDRTVWDVSFP 1078
               CLP+ EGGLG R    WNK L  + +W +  +  SLW QW     +   + W V+  
Sbjct: 716  VDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNAL 775

Query: 1077 KRDAPHFKNILLIR 1036
            + D   +K +L +R
Sbjct: 776  QTDPWTWKMLLNLR 789


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  443 bits (1140), Expect = e-121
 Identities = 270/794 (34%), Positives = 409/794 (51%), Gaps = 46/794 (5%)
 Frame = -3

Query: 3279 LCGDFNCVLDPSERVGK-RVPQENEFVDFVDTCAYLTMQDVPSTGCIFTWNDKF----VS 3115
            + GDFN VL P E      +  +    DF    + + + D+   G  FTW +K     ++
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 3114 SKIDRTLVNSIWMEKNLFCRTEFLIRGTT-SDHSPCISTLFAKVPTFKREFKFCNAWMDH 2938
             K+DR L N  W   NL+  +  L      SDH  C   L A   + KR FKF N  + +
Sbjct: 61   KKLDRILANDSWC--NLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKN 118

Query: 2937 PSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFNNLSERAEAARRQLDGL 2758
              F   +MD W ST   G    ++  +L  ++  +K+ ++ +++ +  R + A   L   
Sbjct: 119  EDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITC 178

Query: 2757 QQQCDRDPLNRDLRMIEMEARVLSQRLDAVERDFLVQRGN-DGSTTGDIKT--------- 2608
            Q     +P   +  + E+EA+     L   E  F  QR        GD  T         
Sbjct: 179  QNLTLANPSVSNAAL-ELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDS 237

Query: 2607 -----------------------IVADFVNYYSELFGKSVPRPHIDFGVMNA--GYRLTE 2503
                                   I+   V YY  L G       ++   MN    YR ++
Sbjct: 238  RKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQ 297

Query: 2502 EDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVRGDVLAAVNEFFSKG 2323
            +  + L    T  EIK A   +  +K  GPDGY   FF+  W+I+  +VLAA++EFF  G
Sbjct: 298  DQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSG 357

Query: 2322 LILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILTNRMSPLLHKLVSPAQA 2143
             +L+  N T + LIPKT++  T+++FRPI+C N +YK+I+K+LT+R+  LL  ++  +Q+
Sbjct: 358  QLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQS 417

Query: 2142 AFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDCISWDFLKEVLYGLNFH 1963
            AF+ GR + +N  LA E++  Y R   I+ R M+K+DL+KA+D + W+F+   L  L   
Sbjct: 418  AFLPGRSLAENVLLATEMVHGYNR-LNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIP 476

Query: 1962 PCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRLLHTRT 1783
              +I WI  C+T+P+F+I++NG   GF R  +GLRQGDP+SP LF+L M+  S+LL++R 
Sbjct: 477  ERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRY 536

Query: 1782 QSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEFTTTSGLTINQSKSL 1603
             S    YHPK    +I+HL FADD+++F  G  SSM  +  TLD+F   SGL +N+ KS 
Sbjct: 537  DSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQ 596

Query: 1602 VFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSPLLAQISSFVHRWSN 1423
            +F  G+   E+      +GF  G+ P++YLGLPL  R L   DY PLL ++S+ +  W +
Sbjct: 597  LFQAGLDLSERITSA-AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVS 655

Query: 1422 IHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKFLWGGNY-----CPVAW 1258
              LS AGR +L+ SV+ G+  +W+    LP   I +I  L  KFLW G+        V+W
Sbjct: 656  KALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSW 715

Query: 1257 TQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWVHGEYIRDRTVWDVSFP 1078
               CLP+ EGGLG R    WNK L  + +W +  +  SLW QW     +   + W V+  
Sbjct: 716  VDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNAL 775

Query: 1077 KRDAPHFKNILLIR 1036
            + D   +K +L +R
Sbjct: 776  QTDPWTWKMLLNLR 789


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  439 bits (1129), Expect = e-119
 Identities = 276/857 (32%), Positives = 445/857 (51%), Gaps = 65/857 (7%)
 Frame = -3

Query: 3297 LDMPAFLCGDFNCVLDPSERV---GKRVPQENEFVDFVDTCAYLTMQDVPSTGCIFTWND 3127
            +D P  + GDFN +L PSE     G  V +      F +T    ++ D+   G  FTW +
Sbjct: 32   IDKPWTVLGDFNQILHPSEHSTSDGFNVDRPTRI--FRETILLASLTDLSFRGNTFTWWN 89

Query: 3126 KF----VSSKIDRTLVNSIWMEK-----NLFCRTEFLIRGTTSDHSPCISTLFAKVPTFK 2974
            K     V+ K+DR LVN  W         LF   +F      SDHS C  +L +  P  K
Sbjct: 90   KRSRAPVAKKLDRILVNDKWTTTFPSSLGLFGEPDF------SDHSSCELSLMSASPRSK 143

Query: 2973 REFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFNNLSE 2794
            + F+F N  +   +F   +   W ST+ TG    ++ ++L  L+ ++++ ++ +++++ +
Sbjct: 144  KPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEK 203

Query: 2793 RAEAARRQLDGLQQQCDRDPLNRDLRMIEMEARVLSQRLDAVERDFLVQRGN-DGSTTGD 2617
            R + A   L   Q      P   +   IE E +   + L   E  F  QR   +    GD
Sbjct: 204  RTKEAHDALLLAQSVLLASPCPSNAA-IEAETQRKWRILAEAEASFFYQRSRVNWLREGD 262

Query: 2616 IKTIV----------ADFVNYYSELFGKSVPRPH------IDFGVMNAG----------- 2518
            + +             + +++ S+  G  +          +++   N G           
Sbjct: 263  MNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQGLPLFEQA 322

Query: 2517 -------YRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVRGD 2359
                   YR +   Q +L +P +  +IK A + +  +KA GPDG+   FF   W I+ G+
Sbjct: 323  DISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGE 382

Query: 2358 VLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILTNRMS 2179
            V  A++EFF+ G +L+  N T + LIPK T+  +++DFRPI+C N VYK+I+K+LT+R+ 
Sbjct: 383  VTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLK 442

Query: 2178 PLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDCISWD 1999
              L   +S +Q+AF+ GR   +N  LA EL+  Y +   I    M+K+DLRKA+D + WD
Sbjct: 443  DFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNK-KNIAPSSMLKVDLRKAFDSVRWD 501

Query: 1998 FLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLC 1819
            F+   L  LN    F  WI+ C+++ +FS+ +NG + G     +GLRQGDPMSP LF+L 
Sbjct: 502  FIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLA 561

Query: 1818 MDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEFTT 1639
            M+  S LL +R  S   +YHPK  +  I+HL FADD+++F  G  SS+  +  +L++F  
Sbjct: 562  MEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAG 621

Query: 1638 TSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSPLL 1459
             SGL +N +K+ ++  G+   E   +   +GF  GSLPV+YLGLPL SR LT  +Y+PL+
Sbjct: 622  WSGLLMNTNKTQLYHAGLSQSESDSMAS-YGFKLGSLPVRYLGLPLMSRKLTIAEYAPLI 680

Query: 1458 AQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKFLWGG 1279
             +I++  + W    LS AGR++L+ SV+ G+  +W+ +  LP   I +I  L  +FLW  
Sbjct: 681  EKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSS 740

Query: 1278 -----NYCPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWVHGEY 1114
                     VAW+QVCLP+ EGG+GLR  +  N+ L+ + +W + + S SLW+ W H ++
Sbjct: 741  RIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAW-HKQH 799

Query: 1113 I--RDRTVWDVSFPKRDAPHFKNILLIR---DQILHDCGGNLTDAQSKLASW-------- 973
               +  + W+      D+ ++K +L +R   ++ +    GN  DA     +W        
Sbjct: 800  SLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPLIK 859

Query: 972  FAGDRGTKEAYEHFRAK 922
            F G+ G ++   H  AK
Sbjct: 860  FLGNEGPRDLRVHLNAK 876


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  439 bits (1129), Expect = e-119
 Identities = 328/1128 (29%), Positives = 511/1128 (45%), Gaps = 56/1128 (4%)
 Frame = -3

Query: 3657 GMQSTHKKAAVRRLITDHKIDIIGILETKFTVAKFCKFSPTFLHDWNFAHNFNCAKNGRI 3478
            G+ S +++  VR  I  + + +   LET            + L  W    N+ C++ GRI
Sbjct: 53   GLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSELGRI 112

Query: 3477 LLYWNTSTVDLNIISIESQVIHALVTCRITGITFHFALCYGFNKSHHRMDLWDSLIL--- 3307
             + W+ S + + +     Q++   +       +F  A  YG N    R  LW+ +++   
Sbjct: 113  WIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDILVLSR 171

Query: 3306 RVPLDM-PAFLCGDFNCVLDPSER--VGKRVPQENEFVDFVDTCAYLTMQDVPSTGCIFT 3136
              PL + P  L GDFN +   SE   + + +       D         + D+PS G  FT
Sbjct: 172  TSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVFFT 231

Query: 3135 WN----DKFVSSKIDRTLVNSIWMEKNLFCRTEFLIRGTTSDHSPCISTLFAKVPTFKRE 2968
            W+    D  +  K+DR L N  W          F   G  SDH+PCI  +  + P  K+ 
Sbjct: 232  WSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILIDNQPPPSKKS 290

Query: 2967 FKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFNNLSERA 2788
            FK+ +    HPS+   L   W+  T  G     L   L   +   + LN+  F+N+ +R 
Sbjct: 291  FKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRT 350

Query: 2787 EAARRQLDGLQQQCDRDPLN------------------------------RDLRMIEMEA 2698
              +  +L+ +Q +    P +                              R L   +   
Sbjct: 351  AQSLTRLEDIQVELLTSPSDTLFRREHVARKQWIFFAAALESFFRQKSRIRWLHEGDANT 410

Query: 2697 RVLSQRLDAVERDFLVQ--RGNDGSTTGDIKTIVADFVNYYSELFGKSVPRPHID-FGVM 2527
            R   + + A +   L++  RG+DG    ++  I    + YYS L G  +P  ++  F V 
Sbjct: 411  RFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLG--IPSENVTPFSVE 468

Query: 2526 NAGYRLTEEDQAALVSPVTI----SEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVRGD 2359
                 L     + L S +T      EI   L+ +  +KAPGPDG+P  FF   WAIV+  
Sbjct: 469  KIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSS 528

Query: 2358 VLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILTNRMS 2179
            V+AA+ EFF  G + R  N T ++LIPK T    +  FRP+AC   +YK+IT+I++ R+ 
Sbjct: 529  VVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLK 588

Query: 2178 PLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDCISWD 1999
              + + V   Q  FIKGR + +N  LA EL+  +E   G T R  +++D+ KAYD ++W+
Sbjct: 589  LFIDQAVQANQVGFIKGRLLCENVLLASELVDNFE-ADGETTRGCLQVDISKAYDNVNWE 647

Query: 1998 FLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLC 1819
            FL  +L  L+    FI+WI  C++S ++SIA NG   GF +G++G+RQGDPMS  LF+L 
Sbjct: 648  FLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLV 707

Query: 1818 MDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEFTT 1639
            MD LS+ L     +  F+ HP C    ITHL+FADD+L+F  G  SS+  +   LD+F  
Sbjct: 708  MDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQ 767

Query: 1638 TSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSPLL 1459
             SGL IN+ K+ + L G      + + D  G   GSLPV+YLG+PL S+ +   DY PL+
Sbjct: 768  GSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLV 827

Query: 1458 AQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKFLWGG 1279
             +I+S    W+  HLS AGRL+L+  + +  +   L+    P  + +  + +   F W  
Sbjct: 828  DRINSRFTSWTARHLSFAGRLQLLNWIWR--KLCKLRPFARPFIICEVGSGVTASF-WHD 884

Query: 1278 NYCPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWVHGEYIRDRT 1099
            N     WT      H  G     L+                    L +  V  + +RD T
Sbjct: 885  N-----WTDHGPLLHLTGPAGPLLA-------------------GLPLNSVVRDALRDDT 920

Query: 1098 VWDVSFPKRDAPHFKNILLIRDQILHDCGGNLTDAQSKLASWFAGDR------GTKEAYE 937
             W +S  +   P    ++ +  ++L      +         W  G         T + + 
Sbjct: 921  -WRISSSRSRNP----VITLLQRVLPSAASLIDCPHDDTYLWKIGHHAPSNRFSTADTWS 975

Query: 936  HFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRLK---FSDIPRQCMLCNAA 766
            + +       WHKA+W     PK +   W+    RL T DRL+   FS IP  C+LCN  
Sbjct: 976  YLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFS-IPPTCVLCNDL 1034

Query: 765  EETNDHLFFQCPRTVEIWSGICSWLKIRQRISTVSSGIRRFQQDKAGSGIVRKAKWIALG 586
            +E+ +HLFF+C  + EIWS     L +      +   +      +  +  +     +   
Sbjct: 1035 DESREHLFFRCQFSSEIWSFFMRALNLNPPPQFMHCLLWTLTASRDRN--ITLITKLLFH 1092

Query: 585  ATVSYIWYARNSLYTEGKSPVSSAIIKEIKTDVYRVLYSLFPADAVMS 442
            A+V +IW  RN          +  IIKEI+  V   L  L  +  V+S
Sbjct: 1093 ASVYFIWRERNLRIHSNSVRPAHLIIKEIQLIVRARLDPLSRSSRVVS 1140


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  430 bits (1105), Expect = e-117
 Identities = 321/1067 (30%), Positives = 498/1067 (46%), Gaps = 98/1067 (9%)
 Frame = -3

Query: 3369 ALCYGFNKSHHRMDLWDSLIL-RVPLD---MPAFLCGDFNCVLDPSERVGKRVPQENEFV 3202
            ++ Y  N++  R +LW+ L+L  V L     P  + GDFN VL P+E         N  +
Sbjct: 56   SIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRRM 115

Query: 3201 DFVDTCAY-LTMQDVPSTGCIFTWNDKF----VSSKIDRTLVNSIWMEK-----NLFCRT 3052
                 C +   + D+   G  FTW +K     V+ K+DR LVN  W  +      +F   
Sbjct: 116  KVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGEP 175

Query: 3051 EFLIRGTTSDHSPCISTLFAKVPTFKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQE 2872
            +F      SDH+ C   +   +   KR F+F N  + +P F   + + W S    G    
Sbjct: 176  DF------SDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMF 229

Query: 2871 QLFIRLLKLRPILKELNKTHFNNLSERAEAARRQLDGLQQQCDRDPLNRDLRMIEMEARV 2692
            ++  +L  L+  ++  +  +F+NL +R + A   +   Q +   DP   +  + EMEA+ 
Sbjct: 230  KMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAAL-EMEAQR 288

Query: 2691 LSQRLDAVERDFLVQRGN-------DGSTT------------GDIKTIVAD--------- 2596
                L   E  F  QR         D +T+              I  I+ D         
Sbjct: 289  KWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQL 348

Query: 2595 -----FVNYYSELFGKSVPRPHI---DFGVMNAGYRLTEEDQAALVSPVTISEIKGALYD 2440
                  + Y+S L G  V  P +   DF ++   +R + + +  L    +  +IK A + 
Sbjct: 349  GIKEHCIEYFSNLLGGEVGPPMLIQEDFDLL-LPFRCSHDQKKELAMSFSRQDIKSAFFS 407

Query: 2439 IGDDKAPGPDGYPSAFFKRNWAIVRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDP 2260
               +K  GPDG+P  FFK  W+++  +V  AV+EFF+  ++L+  N T + LIPK T+  
Sbjct: 408  FPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNAS 467

Query: 2259 TVADFRPIACTN----VVYKIITKILTNRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQE 2092
             + DFRPI+C +     +YK+I ++LTNR+  LL +++SP Q+AF+ GR + +N  LA E
Sbjct: 468  KMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATE 527

Query: 2091 LIKKYERGSGITARCMVKIDLRKAYDCISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFS 1912
            L++ Y R   I  R M+K+DLRKA+D I WDF+   L  +     F+YWI  C+++PTFS
Sbjct: 528  LVQGYNR-QNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFS 586

Query: 1911 IAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNIT 1732
            + +NG   GF +  RGLRQG+P+SP LF+L M+  S LL++R Q+    YHPK    +I+
Sbjct: 587  VCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSIS 646

Query: 1731 HLAFADDLLLFGRGDPSSMEVLKNTLDEFTTTSGLTINQSKSLVFLGGVRPYEKQQILDL 1552
            HL FADD+++F  G  SS+  +   L++F   SGL +N+ K+ ++L G+   E   I   
Sbjct: 647  HLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRIEASTI--- 703

Query: 1551 FGFLEGSLPVKYLGLPLASRTLTCNDYSPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQ 1372
                              +R L   +Y PLL +++     WS   LS AGR++L+ SV+ 
Sbjct: 704  ------------------ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVIS 745

Query: 1371 GVECYWLQALPLPATVIDRITKLLRKFLWGGNY-----CPVAWTQVCLPRHEGGLGLRDL 1207
            G+  +W+    LP   + RI  L  +FLW GN        VAW++VCLP+ EGG+GLR  
Sbjct: 746  GIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGLRRF 805

Query: 1206 SAWNKALHSKTLWNIHAKSDSLW-------------------------IQWVHGEYIRDR 1102
            +  N      TLW+   K  S W                         IQ    +   D 
Sbjct: 806  TVLN-----TTLWD--GKKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSD- 857

Query: 1101 TVWDVSFPKRDAPHFKNILLIRDQILHDCGGNLTDAQSKLASWFAGD-----RGTKEAYE 937
              W +S P+ D      +L+    I   C     D+      W   D           +E
Sbjct: 858  VGWLISPPRTD--QALALLIHLTTIALPC----FDSSPDTFVWIVDDFTCHGFSAARTWE 911

Query: 936  HFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRLKFSDI--PRQCMLCNAAE 763
              R K   K W K++W     PK +  +W++   RL T  RL    +     C LC++  
Sbjct: 912  AMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRP 971

Query: 762  ETNDHLFFQCPRTVEIWSGICSWLKIRQRISTVSSGI---RRFQQDKAGSGIVRKAKWIA 592
            E+ DHL   C  +  IW  +   L   Q I    + +    R    KA S ++RK   IA
Sbjct: 972  ESRDHLLLYCVFSAVIWKLVFFRLTPSQAIFNSWAELLSWTRINSSKAPS-LLRK---IA 1027

Query: 591  LGATVSYIWYARNSLYTE----GKSPVSSAIIKEIKTDVYRVLYSLF 463
              A+V ++W  RN++         + V   I +E++ ++YR +  LF
Sbjct: 1028 AQASVFHLWKQRNNVLHNSIFISPATVFHFIDRELE-NLYRYIQILF 1073


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  429 bits (1102), Expect = e-116
 Identities = 252/743 (33%), Positives = 371/743 (49%), Gaps = 88/743 (11%)
 Frame = -3

Query: 2517 YRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVRGDVLAAVNE 2338
            +R T  D   L   V+  EIK  L+ +  DK+PGPDGY S F+K  W I+  +    V  
Sbjct: 86   FRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQS 145

Query: 2337 FFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILTNRMSPLLHKLV 2158
            FF KG + + +N  I++LIPK      + D+RPI+C NV+YK+I+KI+ NR+  LL + +
Sbjct: 146  FFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFI 205

Query: 2157 SPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDCISWDFLKEVLY 1978
            +  Q+AF+K R + +N  LA EL+K Y + S I+ARC +KID+ KA+D + W FL   L 
Sbjct: 206  AENQSAFVKDRLLIENLLLATELVKDYHKDS-ISARCAIKIDISKAFDSVQWSFLTNTLV 264

Query: 1977 GLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 1798
             +NF P FI+WI  C+T+ +FS+ +NG   G+ + +RGLRQG  +SP LF++CMD LS++
Sbjct: 265  AMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKM 324

Query: 1797 LHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEFTTTSGLTIN 1618
            L        F +HPKC R  +THL+FADDL++   G   S+E +    DEF   SGL I+
Sbjct: 325  LDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRIS 384

Query: 1617 QSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSPLLAQISSFV 1438
              KS +++ GV P  KQ+I   F F  G LPV+YLGLPL ++ LT  DYSPLL QI   +
Sbjct: 385  LEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRI 444

Query: 1437 HRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKFLWGGNY----- 1273
              W+    S AGR  L++SVL  +  +WL A  LP   I  I KL   FLW G+      
Sbjct: 445  ATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHK 504

Query: 1272 CPVAWTQVCLPRHEGGLGLRDL--------------------SAWNK-----ALHSKTLW 1168
              ++W  VC P+ EGGLGLR+L                    S W K      +  K++W
Sbjct: 505  AKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIW 564

Query: 1167 NI------------------------------HAKSDSLWIQ-W-VHGEYIR---DRTVW 1093
            ++                              + +S S W   W  HG  I    D+   
Sbjct: 565  SLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTI 624

Query: 1092 DVSFPKRDAP-----------HFKNIL-----LIRDQILHDCGGNLTDAQSKLASWFAGD 961
            D+  P+  +            H  ++L     ++  Q +H      T         F   
Sbjct: 625  DLGIPREASVADAWTRRSRRRHRTSLLNEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPH 684

Query: 960  RGTKEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRL----KFSDIP 793
              T++ +   +A      WHK +W  +  PK+++  WLA+  RL T DR+        + 
Sbjct: 685  FSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVS 744

Query: 792  RQCMLCNAAEETNDHLFFQCPRTVEIWSGICSWL---KIRQRISTVSSGIRRFQQDKAGS 622
              C+LC    +T +HLFF C     +W+ +   +   +   R S + + I    QD+   
Sbjct: 745  GNCVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHISTHFQDRVEG 804

Query: 621  GIVRKAKWIALGATVSYIWYARN 553
             + R        AT+ ++W  RN
Sbjct: 805  FLTR----YIFQATIYHVWRERN 823


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  428 bits (1101), Expect = e-116
 Identities = 277/899 (30%), Positives = 454/899 (50%), Gaps = 55/899 (6%)
 Frame = -3

Query: 3669 WNIRGMQSTHKKAAVRRLITDHKIDIIGILETKFTVAKFCKFSPTFLHDWNFAHNFNCAK 3490
            WN+RG   +  +   ++    +K    G++ET     K  KF    L  W+F  N+  + 
Sbjct: 8    WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67

Query: 3489 NGRILLYWNTSTVDLNIISIESQVIHALVTCRITGITFHFALCYGFNKSHHRMDLWDSLI 3310
             G+I + W+ S V + +I    Q+I   +    +   F  ++ Y  N+   R +LW+ L+
Sbjct: 68   LGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNELV 126

Query: 3309 LR----VPLDMPAFLCGDFNCVLDPSERVGKRVPQENEFVDFVDTCAYLTMQDVPSTGCI 3142
                  V +     + GDFN +L+P   +   + ++     F        + D+   G  
Sbjct: 127  QLALSPVVVGRSWIVLGDFNQILNPESAINANIGRKIRA--FRSCLLDSDLYDLVYKGSS 184

Query: 3141 FTWNDKFVS----SKIDRTLVNSIWMEKNLFCRTEFLIRGTT--SDHSPCISTLFAKVPT 2980
            +TW +K  S     KIDR LVN  W   N    + +   G    SDHS C   L   V  
Sbjct: 185  YTWWNKCSSRPLAKKIDRILVNDHW---NTLFPSAYANFGEPDFSDHSSCEVVLDPAVLK 241

Query: 2979 FKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFNNL 2800
             KR F+F N ++ +P F Q + + W S   +G    ++  +L  L+  +   ++ +++++
Sbjct: 242  AKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDI 301

Query: 2799 SERAEAARRQLDGLQQQCDRDPLNRDLRMIEMEARVLSQRLDAVERDFLVQRGN------ 2638
             +R   A   +   Q+    +P +     +E+EA    Q L   E  F  Q+ +      
Sbjct: 302  EKRVSEAHAIVLHRQRITLTNP-SVVHATLELEATRKWQILAKAEESFFCQKSSISWLYE 360

Query: 2637 -DGSTT-----GDIKTIVADFVNYYSELFGKSVPRPH-IDFGV--------------MNA 2521
             D +T       D++  + + +N+  + FG+ +     I  G+              +  
Sbjct: 361  GDNNTAYFHKMADMRKSI-NTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEG 419

Query: 2520 GYRLTEEDQAALVS-------------PVTISEIKGALYDIGDDKAPGPDGYPSAFFKRN 2380
               L + D   L+S               +  +I+ A + +  +KA GPDGY S FFK  
Sbjct: 420  ENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGV 479

Query: 2379 WAIVRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITK 2200
            W +V  +V  AV EFF  G +L+  N T + LIPK T+   + DFRPI+C N +YK+I K
Sbjct: 480  WFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAK 539

Query: 2199 ILTNRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKA 2020
            +LT+R+  LL++++SP+Q+AF+ GR +++N  LA E++  Y     I++R M+K+DLRKA
Sbjct: 540  LLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNT-KNISSRGMLKVDLRKA 598

Query: 2019 YDCISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMS 1840
            +D + WDF+      L     F+ WI  C+++P FS+ +NG + GF +  +GLRQGDP+S
Sbjct: 599  FDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLS 658

Query: 1839 PSLFLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKN 1660
            P LF+L M+  S LL  R  +    YHPK    +I+HL FADD+++F  G  SS+  +  
Sbjct: 659  PYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISE 718

Query: 1659 TLDEFTTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTC 1480
             LD+F + SGL +N+ K+ ++L G    E   I   +GF   +LP++YLGLPL SR L  
Sbjct: 719  ALDDFASWSGLHVNKDKTNLYLAGTDEVEALAI-SHYGFPISTLPIRYLGLPLMSRKLKI 777

Query: 1479 NDYSPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLL 1300
            ++Y     ++      W+   LS AGR++L+ SV+ G+  +W+    L    + +I  L 
Sbjct: 778  SEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLC 832

Query: 1299 RKFLWGGNY-----CPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLW 1138
             +FLW G+        +AW+ VCLP++EGG+GLR  + WNK  + + +W + A +D LW
Sbjct: 833  SRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLRFIWPLFADNDVLW 891


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  426 bits (1096), Expect = e-116
 Identities = 276/899 (30%), Positives = 453/899 (50%), Gaps = 55/899 (6%)
 Frame = -3

Query: 3669 WNIRGMQSTHKKAAVRRLITDHKIDIIGILETKFTVAKFCKFSPTFLHDWNFAHNFNCAK 3490
            WN+RG   +  +   ++    +K    G++ET     K  KF    L  W+F  N+  + 
Sbjct: 8    WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67

Query: 3489 NGRILLYWNTSTVDLNIISIESQVIHALVTCRITGITFHFALCYGFNKSHHRMDLWDSLI 3310
             G+I + W+ S V + +I    Q+I   +    +   F  ++ Y  N+   R +LW+ L+
Sbjct: 68   LGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNELV 126

Query: 3309 LR----VPLDMPAFLCGDFNCVLDPSERVGKRVPQENEFVDFVDTCAYLTMQDVPSTGCI 3142
                  V +     + GDFN +L+P   +   + ++     F        + D+   G  
Sbjct: 127  QLALSPVVVGRSWIVLGDFNQILNPESAINANIGRKIRA--FRSCLLDSDLYDLVYKGSS 184

Query: 3141 FTWNDKFVS----SKIDRTLVNSIWMEKNLFCRTEFLIRGTT--SDHSPCISTLFAKVPT 2980
            +TW +K  S     KIDR LVN  W   N    + +   G    SDHS C   L   V  
Sbjct: 185  YTWWNKCSSRPLAKKIDRILVNDHW---NTLFPSAYANFGEPDFSDHSSCEVVLDPAVLK 241

Query: 2979 FKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFIRLLKLRPILKELNKTHFNNL 2800
             KR F+F N ++ +P F Q + + W S   +G    ++  +L  L+  +   ++ +++++
Sbjct: 242  AKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDI 301

Query: 2799 SERAEAARRQLDGLQQQCDRDPLNRDLRMIEMEARVLSQRLDAVERDFLVQRGN------ 2638
             +R   A   +   Q+    +P +     +E+EA    Q L   E  F  Q+ +      
Sbjct: 302  EKRVSEAHAIVLHRQRITLTNP-SVVHATLELEATRKWQILAKAEESFFCQKSSISWLYE 360

Query: 2637 -DGSTT-----GDIKTIVADFVNYYSELFGKSVPRPH-IDFGV--------------MNA 2521
             D +T       D++  + + +N+  + FG+ +     I  G+              +  
Sbjct: 361  GDNNTAYFHKMADMRKSI-NTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEG 419

Query: 2520 GYRLTEEDQAALVS-------------PVTISEIKGALYDIGDDKAPGPDGYPSAFFKRN 2380
               L + D   L+S               +  +I+ A + +  +KA GPDGY S FFK  
Sbjct: 420  ENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGV 479

Query: 2379 WAIVRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITK 2200
            W +V  +V  AV EFF  G +L+  N T + LIPK T+   + DFRPI+C N +YK+I K
Sbjct: 480  WFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAK 539

Query: 2199 ILTNRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKA 2020
            +LT+R+  LL++++SP+Q+AF+ GR +++N  LA E++  Y     I++R M+K+DLRKA
Sbjct: 540  LLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNT-KNISSRGMLKVDLRKA 598

Query: 2019 YDCISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMS 1840
            +D + WDF+      L     F+ WI  C+++P FS+ +NG + GF +  +GLRQGDP+S
Sbjct: 599  FDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLS 658

Query: 1839 PSLFLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKN 1660
            P LF+L M+  S LL  R  +    YHPK    +I+HL FADD+++F  G  SS+  +  
Sbjct: 659  PYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISE 718

Query: 1659 TLDEFTTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTC 1480
             LD+F + SGL +N+ K+ ++L G    E   I   +GF   +LP++YLGLPL SR L  
Sbjct: 719  ALDDFASWSGLHVNKDKTNLYLAGTDEVEALAI-SHYGFPISTLPIRYLGLPLMSRKLKI 777

Query: 1479 NDYSPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLL 1300
            ++Y     ++      W+   LS AGR++L+ SV+ G+  +W+    L    + +I  L 
Sbjct: 778  SEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLC 832

Query: 1299 RKFLWGGNY-----CPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLW 1138
             +FLW G+        +AW+ VCLP++EGG+ LR  + WNK  + + +W + A +D LW
Sbjct: 833  SRFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPWNKTFYLRFIWPLFADNDVLW 891


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  422 bits (1085), Expect = e-114
 Identities = 245/695 (35%), Positives = 364/695 (52%), Gaps = 21/695 (3%)
 Frame = -3

Query: 2490 ALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVRGDVLAA-VNEFFSKGLIL 2314
            +L +  T  +I+   + +  +K+PGPDG+   FF++ W ++  +V+AA V EFFS G +L
Sbjct: 268  SLCNEFTHDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLL 327

Query: 2313 RNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILTNRMSPLLHKLVSPAQAAFI 2134
              LN TI++L+PK  +  T++DFRPI+C N  YKII K+L NR+   LH +V P+Q+ FI
Sbjct: 328  MELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFI 387

Query: 2133 KGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDCISWDFLKEVLYGLNFHPCF 1954
             GR I DN  LAQE+I  Y +  G   RC   +D+ KA D + WDF+   L   N     
Sbjct: 388  PGRRIGDNILLAQEIICDYHKADG-QPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTL 446

Query: 1953 IYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRLLHTRTQ-S 1777
            I WI +C++S  FS+ +NG   GF   +RGLRQGDP+SP LF++ M+ LS  +  R   S
Sbjct: 447  IGWIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCS 506

Query: 1776 PNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEFTTTSGLTINQSKSLVF 1597
            P F YH +CD+ N++HL FADDLL+F  GD +S+  L +    F + S L  N S+S +F
Sbjct: 507  PCFRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIF 566

Query: 1596 LGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSPLLAQISSFVHRWSNIH 1417
            L GV       +L +  F  G+ PV+YLG+PL +  L   D SPLL +I + +  W N  
Sbjct: 567  LAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKV 626

Query: 1416 LSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKFLWGGN-----YCPVAWTQ 1252
            LS AGRL+L++SVL  ++ YW   L LP  V+  I K LR FLW GN        VAW++
Sbjct: 627  LSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSE 686

Query: 1251 VCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWVHGEYIRDRTVWDVSFPKR 1072
            +CLP+ EGGLG++DL  WNKAL    +WN+ + S + W  WV    ++  + W+   P  
Sbjct: 687  ICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSI 746

Query: 1071 DAPHFKNILLIRDQILHDCGGNLTDAQSKLASWF-----AGDRGTKEAYEHFRAKGEKK- 910
             + +++ +L IR+         + D ++  + WF      G    + +       G  K 
Sbjct: 747  CSWNWRKLLKIRELCCSFFVNIIGDGRA-TSLWFDNWHPLGPLTLRWSSNIIGESGLSKS 805

Query: 909  --------FWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRLKFSDIPRQCMLCNAAEETN 754
                    +   + W +  P +F V  +     RL  F                   ET+
Sbjct: 806  AMLTPNGFYSTSSAWNTLRPSRFIVPWY-----RLVWF-----------------VAETH 843

Query: 753  DHLFFQCPRTVEIWSGICSWLKIRQRISTVSSGIRRFQQDKAGSGIVRKAKWIALGATVS 574
            +HLFF C  +  IW+ + S   + + +   S  I     +  G+ +      +AL A V 
Sbjct: 844  NHLFFDCAYSFGIWTHVLSKCDVSKPLLPWSDFIFWVATNWKGNSLPVVILKLALQAVVY 903

Query: 573  YIWYARNSLYTEGKSPVSSAIIKEIKTDVYRVLYS 469
             IW  RN+     +S   + + K I   +   L S
Sbjct: 904  AIWRERNNRRFRNESLPPAVVFKGIVESIRLCLLS 938


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  415 bits (1067), Expect = e-112
 Identities = 241/675 (35%), Positives = 355/675 (52%), Gaps = 44/675 (6%)
 Frame = -3

Query: 2976 KREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFI---RLLKLRPILKELNKTHFN 2806
            ++ FKF N     P F   +  +W S+         L+    +L  L+P L+EL K    
Sbjct: 545  RKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLG 604

Query: 2805 NLSERAEAARRQLDGLQQQCDRDPLNRDLRMIEMEARVLSQRLDAVERDFLVQRGN---- 2638
            +L +R   A   L   Q     +P    +   E++A      L  +E  FL Q+      
Sbjct: 605  DLPKRTREAHILLCEKQATTLANPSQETIAE-ELKAYTDWTHLSELEEGFLKQKSKLHWM 663

Query: 2637 ---DGSTT---------------GDIKTIVADFVNYYSELFGKS-------VPRPHIDFG 2533
               DG+ +                +I+   A+ +    E+ G++       + R   DF 
Sbjct: 664  NVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFH 723

Query: 2532 VMNA-------GYRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWA 2374
             ++         YR +  DQ  L   VT  EI+  L+ + ++K+PGPDGY S FFK  W+
Sbjct: 724  GISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWS 783

Query: 2373 IVRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKIL 2194
            +   D +AA+  FF KG + + LN TI++LIPK      + D+RPI+C NV+YK+I+KIL
Sbjct: 784  LTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKIL 843

Query: 2193 TNRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYD 2014
             NR+  LL   +   Q+AF+K R + +N  LA EL+K Y + S +T RC +KID+ KA+D
Sbjct: 844  ANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKES-VTPRCAMKIDISKAFD 902

Query: 2013 CISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPS 1834
             + W FL   L  LNF   F +WI  C+++ TFS+ +NG   GF    RGLRQG  +SP 
Sbjct: 903  SVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPY 962

Query: 1833 LFLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTL 1654
            LF++CM+ LS ++       N  YHPKC++  +THL FADDL++F  G   S+E + N  
Sbjct: 963  LFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVF 1022

Query: 1653 DEFTTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCND 1474
             EF   SGL I+  KS ++L GV   ++ Q L  F F  G LPV+YLGLPL ++ +T  D
Sbjct: 1023 KEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTAD 1082

Query: 1473 YSPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRK 1294
            YSPL+  + + +  W+   LS AGRL L+ SV+  +  +W+ A  LPA  I  I KL   
Sbjct: 1083 YSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSA 1142

Query: 1293 FLWGG-----NYCPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQW 1129
            FLW G         +AW+ +C P+ EGGLG++ L+  NK    K +W + +   SLW+ W
Sbjct: 1143 FLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTW 1202

Query: 1128 VHGEYIRDRTVWDVS 1084
            +    IR  T W  +
Sbjct: 1203 IWTFIIRKGTFWSAN 1217



 Score = 76.3 bits (186), Expect = 2e-10
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
 Frame = -3

Query: 954  TKEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRLKFSDIPR--QCM 781
            TK  + + R    ++ W+K +W  Y  PK+S  LWL ++ RL T DR+K  +  +   C 
Sbjct: 1338 TKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCT 1397

Query: 780  LCNAAEETNDHLFFQCPRTVEIWSGICSWLKIRQRISTVSSGIRRFQQDKAGSGIVRKAK 601
            LCN AEET DHLFF C  T  +W  +      R   +  S    R       S + R   
Sbjct: 1398 LCNNAEETRDHLFFSCQYTSYVWEALTQ----RLLSTNYSRDWNRLFTLLCTSNLPRDHL 1453

Query: 600  WI---ALGATVSYIWYARNSLYTEGKSPVSSAIIKEIKTDVYRVLYSL 466
            ++      A++ +IW  RN+      S  ++ +IK I   V   + S+
Sbjct: 1454 FLFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVRNRISSI 1501


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  414 bits (1063), Expect = e-112
 Identities = 265/802 (33%), Positives = 398/802 (49%), Gaps = 65/802 (8%)
 Frame = -3

Query: 3336 RMDLW-------DSLILRVPLDMPAFLCGDFNCVLDPSERVGKRVPQENEFV-----DFV 3193
            R +LW       DS I+R     P  + GDFN +LD  E    R   EN        DF 
Sbjct: 4    RKELWNDLRDHSDSPIIR---SKPWIIFGDFNEILDMEEHSNSR---ENPVTTTGMRDFQ 57

Query: 3192 DTCAYLTMQDVPSTGCIFTWNDK----FVSSKIDRTLVNSIWMEKNLFCRTEFLIR-GTT 3028
                + ++ D+   G +FTW++K     ++ K+DR LVN +W++   F R+  +   G  
Sbjct: 58   MAVNHCSITDLAYHGPLFTWSNKRENDLIAKKLDRVLVNDVWLQS--FPRSYSVFEAGGC 115

Query: 3027 SDHSPCISTL---FAKVPTFKREFKFCNAWMDHPSFRQTLMDYWDSTTTTGGKQEQLFI- 2860
            SDH  C   L      V   KR FKF N   +   F  T+  YW+ T         LF  
Sbjct: 116  SDHLRCRINLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRF 175

Query: 2859 --RLLKLRPILKELNKTHFNNLSERAEAARRQLDGLQQQCDRDPLNRDLRMIEMEARVLS 2686
              +L  L+P+L+ L K    NL ++ + A   L   Q     +P    ++  E EA    
Sbjct: 176  SKKLKGLKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSMQE-ENEAYAKW 234

Query: 2685 QRLDAVERDFLVQRG---------------------------------NDGSTTGDIKTI 2605
              +  +E  FL QR                                  +DGS     + I
Sbjct: 235  DHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKI 294

Query: 2604 VADFVNYYSELFGKSVPRPHIDFGVMNAG----YRLTEEDQAALVSPVTISEIKGALYDI 2437
              +  +++ E F + +P       V        YR ++ D+  L + V+  EI   ++ +
Sbjct: 295  KTEAEHHFRE-FLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSM 353

Query: 2436 GDDKAPGPDGYPSAFFKRNWAIVRGDVLAAVNEFFSKGLILRNLNHTIVSLIPKTTHDPT 2257
             +DK+PGPDGY + F+K  W I+  + + A+  FF+KG + + +N TI++LIPK      
Sbjct: 354  PNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKE 413

Query: 2256 VADFRPIACTNVVYKIITKILTNRMSPLLHKLVSPAQAAFIKGRCITDNFFLAQELIKKY 2077
            + D+RPI+C NV+YK+I+KI+ NR+  +L K +   Q+AF+K R + +N  LA E++K Y
Sbjct: 414  MKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDY 473

Query: 2076 ERGSGITARCMVKIDLRKAYDCISWDFLKEVLYGLNFHPCFIYWIMTCVTSPTFSIAING 1897
             + S +++RC +KID+ KA+D + W FL  VL  +NF P F +WI  C+T+ +FS+ +NG
Sbjct: 474  HKDS-VSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNG 532

Query: 1896 GAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRLLHTRTQSPNFSYHPKCDRNNITHLAFA 1717
               G     R LRQG  +SP LF++ MD LS++L     +  F YHPKC    +THL+FA
Sbjct: 533  ELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFA 592

Query: 1716 DDLLLFGRGDPSSMEVLKNTLDEFTTTSGLTINQSKSLVFLGGVRPYEKQQILDLFGFLE 1537
            DDL++   G   S++ +   L EF   SGL I+  KS ++L GV+    Q+I+  F F  
Sbjct: 593  DDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDV 652

Query: 1536 GSLPVKYLGLPLASRTLTCNDYSPLLAQISSFVHRWSNIHLSRAGRLELVRSVLQGVECY 1357
            G LPV+YLGLPL S+ LT +D  PL+ Q+   +  W++  LS AGRL L+ S L  +  +
Sbjct: 653  GKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNF 712

Query: 1356 WLQALPLPATVIDRITKLLRKFLWGG-----NYCPVAWTQVCLPRHEGGLGLRDLSAWNK 1192
            W+ A  LP   I  I KL   FLW G     N   V+W  +C P+ E         AW+K
Sbjct: 713  WMAAFRLPRACIREIDKLCSAFLWSGTELSSNKAKVSWEAICKPKKE---------AWHK 763

Query: 1191 ALHSKTLWNIHAKSDSLWIQWV 1126
                  +W  H      +  W+
Sbjct: 764  G-----VWFAHETPKHSFCVWL 780



 Score = 70.5 bits (171), Expect = 1e-08
 Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
 Frame = -3

Query: 924  KGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRLKFSDIPRQ--CMLCNAAEETND 751
            K +K+ WHK +W ++  PK S  +WLA+  +L T  R++  ++     C+LCN   ET D
Sbjct: 755  KPKKEAWHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRD 814

Query: 750  HLFFQCPRTVEIWSGICSWLKIRQRIS---TVSSGIRRFQQDKAGSGIVRKAKWIALGAT 580
            HLFF C  T  IW  +   L  R   +   T+ S +     D+    + R      L A+
Sbjct: 815  HLFFSCAYTSGIWEALAKNLLQRSYTTDWQTIISYVSGQCHDRVSCFLARS----VLQAS 870

Query: 579  VSYIWYARNSLYTEGKSPVSSA 514
            V  IW  RN     G++P  +A
Sbjct: 871  VYTIWRERNG-RRHGETPNPAA 891


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  404 bits (1039), Expect = e-109
 Identities = 204/526 (38%), Positives = 309/526 (58%), Gaps = 9/526 (1%)
 Frame = -3

Query: 2637 DGSTTGDIKTIVADFVNYYSELFGKSVPRPHIDFGVMNAG----YRLTEEDQAALVSPVT 2470
            DG      + I  + VNY+ + F +++P  +    V        +R +E+D   L   VT
Sbjct: 117  DGLVVTSQQDIQTEAVNYFQD-FLQTIPADYEGMCVEELENLLPFRCSEDDHRLLTRVVT 175

Query: 2469 ISEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVRGDVLAAVNEFFSKGLILRNLNHTIV 2290
              EIK  ++ +  DK+PGPDGY S F+K +W I+  +V+ A+  FF+KG + + +N TI+
Sbjct: 176  GEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTIL 235

Query: 2289 SLIPKTTHDPTVADFRPIACTNVVYKIITKILTNRMSPLLHKLVSPAQAAFIKGRCITDN 2110
            +LIPK      + D+RPI+C NV+YK I+KIL NR+  +L K +   Q+AF+K R + +N
Sbjct: 236  ALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIEN 295

Query: 2109 FFLAQELIKKYERGSGITARCMVKIDLRKAYDCISWDFLKEVLYGLNFHPCFIYWIMTCV 1930
              LA EL+K Y + S I+ RC +KID+ KA+D + W FL  VL  +NF   FI+WI  C+
Sbjct: 296  VLLATELVKDYHKDS-ISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCM 354

Query: 1929 TSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRLLHTRTQSPNFSYHPKC 1750
            ++ +FSI +NG   G+ R  RGLRQG  +SP LF++ MD LSR+L     +  F YHP+C
Sbjct: 355  STASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRC 414

Query: 1749 DRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEFTTTSGLTINQSKSLVFLGGVRPYEK 1570
                +THL FADDL++   G   S++ +   L++F    GL I   K+ ++L GV  + +
Sbjct: 415  KTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSR 474

Query: 1569 QQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSPLLAQISSFVHRWSNIHLSRAGRLEL 1390
            Q +   + F  G LPV+YLGLPL ++ LT +DYSPL+ QI   +  W++ +LS AGRL L
Sbjct: 475  QLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSL 534

Query: 1389 VRSVLQGVECYWLQALPLPATVIDRITKLLRKFLWGG-----NYCPVAWTQVCLPRHEGG 1225
            + SVL  +  +W+ A  LP   I+ I ++    LW G         V+W ++C P+ EGG
Sbjct: 535  INSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGG 594

Query: 1224 LGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWVHGEYIRDRTVWDV 1087
            LGL+ L   NK    K +W + +  DSLW++W     ++  + W +
Sbjct: 595  LGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSI 640



 Score = 98.2 bits (243), Expect = 5e-17
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%)
 Frame = -3

Query: 954  TKEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLAMRGRLKTFDRLKF--SDIPRQCM 781
            TK+ + H R    ++ WHK +W ++  PKFS   WLA+R RL T DR+    +  P  C+
Sbjct: 762  TKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCV 821

Query: 780  LCNAAEETNDHLFFQCPRTVEIWSGICSWLKIRQRISTVSSGIRRFQQDKAGSGIVRKAK 601
             C++  ET DHLFFQC  + EIW+ I   +  + R ST  S +  +  D     I     
Sbjct: 822  FCSSPMETRDHLFFQCCYSSEIWTSIAKNV-YKDRFSTKWSAVVNYISDSQPDRIQSFLS 880

Query: 600  WIALGATVSYIWYARNSLYTEGKSPVSSAIIKEIKTDVYRVLYSL 466
                  ++  IW  RNS     KS  +S +I++I   +   L ++
Sbjct: 881  RYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQIDKTIRNQLSTI 925


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  398 bits (1023), Expect = e-107
 Identities = 200/483 (41%), Positives = 284/483 (58%), Gaps = 5/483 (1%)
 Frame = -3

Query: 2517 YRLTEEDQAALVSPVTISEIKGALYDIGDDKAPGPDGYPSAFFKRNWAIVRGDVLAAVNE 2338
            +R +  DQ  L   VT  E +  L+ +  +K PGPDGY S FFK  W+I   D +AA+  
Sbjct: 12   FRCSATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKS 71

Query: 2337 FFSKGLILRNLNHTIVSLIPKTTHDPTVADFRPIACTNVVYKIITKILTNRMSPLLHKLV 2158
            FF KG + + LN TI++LIPK      + D+RPI+C NV+YK+I+KI+ NR+  +L   +
Sbjct: 72   FFIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFI 131

Query: 2157 SPAQAAFIKGRCITDNFFLAQELIKKYERGSGITARCMVKIDLRKAYDCISWDFLKEVLY 1978
               Q+AF++ R + +N  LA EL+K Y + S I+ RC +KID+ KA+D + W FL   L 
Sbjct: 132  LQNQSAFVRERLLIENVLLATELVKDYHKDS-ISPRCAMKIDISKAFDSVQWQFLLNTLE 190

Query: 1977 GLNFHPCFIYWIMTCVTSPTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 1798
             LNF   F +WI  C+++ TFS+ +NG   GF   +RGLRQG  +SP LF++CM+ LS +
Sbjct: 191  ALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHM 250

Query: 1797 LHTRTQSPNFSYHPKCDRNNITHLAFADDLLLFGRGDPSSMEVLKNTLDEFTTTSGLTIN 1618
            +       N  YHPKC + ++THL FADDL++F  G   S+E + N   EF   SGL I+
Sbjct: 251  IDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHIS 310

Query: 1617 QSKSLVFLGGVRPYEKQQILDLFGFLEGSLPVKYLGLPLASRTLTCNDYSPLLAQISSFV 1438
              KS ++L GV    +  IL  F F  G LPV+YLGLPL ++ +T  DYSPLL ++ S +
Sbjct: 311  LEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKI 370

Query: 1437 HRWSNIHLSRAGRLELVRSVLQGVECYWLQALPLPATVIDRITKLLRKFLWGG-----NY 1273
              W+   LS AGRL L+ SV+  +  +W+ A  LPA  I  I KL   FLW G       
Sbjct: 371  SSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKK 430

Query: 1272 CPVAWTQVCLPRHEGGLGLRDLSAWNKALHSKTLWNIHAKSDSLWIQWVHGEYIRDRTVW 1093
              + WT +C  + EGGLG++ L   NK    K +W + ++  SLW+ WV    IR  + W
Sbjct: 431  AKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFW 490

Query: 1092 DVS 1084
              +
Sbjct: 491  SAN 493