BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00010786
         (1759 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   669   0.0  
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   538   e-150
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   535   e-149
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   535   e-149
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   534   e-149
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   531   e-148
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              531   e-148
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   523   e-145
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   522   e-145
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   522   e-145
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   516   e-143
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   510   e-142
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   506   e-140
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   506   e-140
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   503   e-140
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   502   e-139
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     494   e-137
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   489   e-135
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   486   e-134
ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phas...   484   e-134

>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  669 bits (1725), Expect = 0.0
 Identities = 360/565 (63%), Positives = 426/565 (75%), Gaps = 7/565 (1%)
 Frame = -3

Query: 1682 MEAGRSLVSSPLQFXXXXXXXXXXXXXXXXXXXLHEQVXXXXXXXXXXXXXXXXXXSVLI 1503
            ME  RSLVSSP QF                    HEQV                  SVLI
Sbjct: 1    METVRSLVSSPPQFPLRTHVRNCSSSCSSVLLL-HEQVTPALTSLSTPSLARHTTTSVLI 59

Query: 1502 QDQRNDSRPLLCLKEDITFQKPLDRQ---LTPASSSHDESED-VDPNEHVDDIELQLLRR 1335
            QDQRN+SRPLL LK+D TFQ+  DR+    TPASSS +E  D +DP+++ +D++LQLLRR
Sbjct: 60   QDQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRR 119

Query: 1334 PELWYLLASLRKKETTFPLTAV-SISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 1158
            PELWYL +SL+KKE  FP T   S+ S +E  TG EA+HV+ LAREAFSA K+A  IA+D
Sbjct: 120  PELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASIAED 179

Query: 1157 AGISGINADDFSSTRGLASDPV--IVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSH 984
            A +     D+ SSTR L   PV  IVRS R LERQAKRR  PKP++E  E NH RK   H
Sbjct: 180  ARLY----DNSSSTRSLVGSPVQRIVRSKRRLERQAKRR-APKPQLEDQEMNHRRKLEPH 234

Query: 983  RKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPT 804
            +K    +DPNDPLRLFL GP             LI KIQ+LMKLQ V++RL  QFS EPT
Sbjct: 235  KKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQFSREPT 294

Query: 803  ILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSL 624
            ++EWAAAVGIS Q+L+ Q++ GN SR+KLIYANFR+VV+IAKQYQGRGLNLQDLLQ GS+
Sbjct: 295  LVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLGSM 354

Query: 623  GLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTC 444
            GLMKSVEKFKP  GCRFATYAYWWIRQ IRK++FQHSRTIRLPEN+Y LLSKVYEAKKTC
Sbjct: 355  GLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKKTC 414

Query: 443  FQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTTIDT 264
             +QGN  P++EDIAA AG++VE++++L YT+RVPLSMQ+PVWMDQ TTFQEITADT ++ 
Sbjct: 415  IKQGNHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAVEA 474

Query: 263  PDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERVRQL 84
            PDVG +KQ+MRQH RNLLSVLNPRERKIIR RFGI+DG+QK+LS+IGAGFGLSKER+RQ+
Sbjct: 475  PDVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIRQI 534

Query: 83   ESRALYKLKQCLNSQGLEAYADMLI 9
            ESRALYKLKQCL+S GL AYA+ML+
Sbjct: 535  ESRALYKLKQCLSSHGLSAYAEMLV 559


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  538 bits (1386), Expect = e-150
 Identities = 304/568 (53%), Positives = 378/568 (66%), Gaps = 10/568 (1%)
 Frame = -3

Query: 1682 MEAGRSLVSSPLQFXXXXXXXXXXXXXXXXXXXL--HEQVXXXXXXXXXXXXXXXXXXSV 1509
            MEAGR  +SS   F                   L  HEQ                   SV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1508 LIQDQRNDSRPLL-CLKEDITFQKPLDR-QLTPASSSHDESEDVDPNEHVDDIELQLLRR 1335
            L+Q+QR++ +PLL  LKED T +  LDR Q+   +S H++ +  D    V+  + QLL  
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNH 120

Query: 1334 PELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDA 1155
              L    +     + + PLT  S+++ S +   +E  +VV LA++A SAS++A  +A+D+
Sbjct: 121  DILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDS 180

Query: 1154 GISGINADDFSST---RGLASDPVIVRSTRLLERQAKR---RRVPKPKVEFLETNHHRKP 993
               G + DD   T     +  +   VRSTR+LER+ KR   R+VPK KV   E+N     
Sbjct: 181  QSMGADFDDLGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGS 240

Query: 992  GSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSC 813
               +K+   F+PNDPLRLFL GP             LI ++QDL KL+ VK+RL  QF  
Sbjct: 241  DVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGR 300

Query: 812  EPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQE 633
            EPT++EWA AVGISCQ LKSQ+  G  SR+KLIYAN RMVVHIAKQYQGRGL LQDL+QE
Sbjct: 301  EPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQE 360

Query: 632  GSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAK 453
            GS+GLMKSVEKFKPQAGCRFATYAYWWIRQ +RKAIFQHSRTIRLPEN+Y LL KV EAK
Sbjct: 361  GSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAK 420

Query: 452  KTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTT 273
            K+C Q+GN NP++E++A   GITVE++EKL Y  R+PLSMQQPVW DQ TTFQE+TADT 
Sbjct: 421  KSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTG 480

Query: 272  IDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERV 93
            ++ PDV V KQLMRQHVR+LLS+LN RER+IIR R+GI+DGKQ++LSEIG  FGLSKERV
Sbjct: 481  VEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERV 540

Query: 92   RQLESRALYKLKQCLNSQGLEAYADMLI 9
            RQLESRA  KL+Q L SQGL AY  +L+
Sbjct: 541  RQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  535 bits (1378), Expect = e-149
 Identities = 298/569 (52%), Positives = 380/569 (66%), Gaps = 11/569 (1%)
 Frame = -3

Query: 1682 MEAGRSLVSSPLQFXXXXXXXXXXXXXXXXXXXL-----HEQVXXXXXXXXXXXXXXXXX 1518
            MEAGR+L+SSP  F                         +EQ                  
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1517 XSVLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNEHVDDIELQL 1344
             SVL+Q+QR++ RPLL + KED T Q   D R +   +   +E    D ++ V D+E Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 1343 LRRPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWI 1167
            L  P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 1166 AKDAGISGINADDFSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRK 996
            A++  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK
Sbjct: 181  AENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRK 240

Query: 995  PGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFS 816
                +KL   FD NDPLRLFL GP             LI +IQDL++L+  K++L +QF 
Sbjct: 241  ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300

Query: 815  CEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQ 636
             EPT++EWA A+G+SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQ
Sbjct: 301  REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQ 360

Query: 635  EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEA 456
            EGS+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EA
Sbjct: 361  EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 420

Query: 455  KKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADT 276
            K+   Q+GN +P +ED+A   GITVE++E+L +  R+PLSMQQPVW DQ TTFQEITADT
Sbjct: 421  KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 480

Query: 275  TIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKER 96
             ++ PD+ V KQLMRQHVRNLL++LNP+ER I+R RFGI+DGK K+LSE+G  FGLSKER
Sbjct: 481  GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 540

Query: 95   VRQLESRALYKLKQCLNSQGLEAYADMLI 9
            VRQLESRALY+LKQ L  +    YAD+LI
Sbjct: 541  VRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  535 bits (1377), Expect = e-149
 Identities = 298/570 (52%), Positives = 380/570 (66%), Gaps = 12/570 (2%)
 Frame = -3

Query: 1682 MEAGRSLVSSPLQFXXXXXXXXXXXXXXXXXXXL------HEQVXXXXXXXXXXXXXXXX 1521
            MEAGR+L+SSP  F                          +EQ                 
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 1520 XXSVLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNEHVDDIELQ 1347
              SVL+Q+QR++ RPLL + KED T Q   D R +   +   +E    D ++ V D+E Q
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 1346 LLRRPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMW 1170
             L  P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  
Sbjct: 121  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 180

Query: 1169 IAKDAGISGINADDFSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHR 999
            +A++  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + R
Sbjct: 181  LAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSR 240

Query: 998  KPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQF 819
            K    +KL   FD NDPLRLFL GP             LI +IQDL++L+  K++L +QF
Sbjct: 241  KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 300

Query: 818  SCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLL 639
              EPT++EWA A+G+SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLL
Sbjct: 301  GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLL 360

Query: 638  QEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYE 459
            QEGS+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V E
Sbjct: 361  QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLE 420

Query: 458  AKKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITAD 279
            AK+   Q+GN +P +ED+A   GITVE++E+L +  R+PLSMQQPVW DQ TTFQEITAD
Sbjct: 421  AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITAD 480

Query: 278  TTIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKE 99
            T ++ PD+ V KQLMRQHVRNLL++LNP+ER I+R RFGI+DGK K+LSE+G  FGLSKE
Sbjct: 481  TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 540

Query: 98   RVRQLESRALYKLKQCLNSQGLEAYADMLI 9
            RVRQLESRALY+LKQ L  +    YAD+LI
Sbjct: 541  RVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  534 bits (1375), Expect = e-149
 Identities = 285/507 (56%), Positives = 364/507 (71%), Gaps = 6/507 (1%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNEHVDDIELQLLR 1338
            VL+Q+QR++ RPLL + KED T Q   D R +   +   +E    D ++ V D+E Q L 
Sbjct: 55   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 114

Query: 1337 RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 1161
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 115  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 174

Query: 1160 DAGISGINADDFSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 990
            +  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK  
Sbjct: 175  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKAS 234

Query: 989  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCE 810
              +KL   FD NDPLRLFL GP             LI +IQDL++L+  K++L +QF  E
Sbjct: 235  VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 294

Query: 809  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 630
            PT++EWA A+G+SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 295  PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 354

Query: 629  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 450
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 355  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 414

Query: 449  TCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTTI 270
               Q+GN +P +ED+A   GITVE++E+L +  R+PLSMQQPVW DQ TTFQEITADT +
Sbjct: 415  LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGV 474

Query: 269  DTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERVR 90
            + PD+ V KQLMRQHVRNLL++LNP+ER I+R RFGI+DGK K+LSE+G  FGLSKERVR
Sbjct: 475  EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVR 534

Query: 89   QLESRALYKLKQCLNSQGLEAYADMLI 9
            QLESRALY+LKQ L  +    YAD+LI
Sbjct: 535  QLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  531 bits (1367), Expect = e-148
 Identities = 286/511 (55%), Positives = 368/511 (72%), Gaps = 10/511 (1%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPL-LCLKEDITFQKPLDRQLTPASSSHDESEDVDPNEHVDDIELQLLRR 1335
            VL+Q+QR++ RP    LK++ TFQ  L+++      S DE    D N+++ + E QLL +
Sbjct: 64   VLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQ 123

Query: 1334 PELWYLLASLRKKETTFPLTAV--SISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 1161
            P LWY L S +  E +   +++  SI++  E S  ++   V+ LA++A SASK+A+ + +
Sbjct: 124  PGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYE 183

Query: 1160 DAGISGINADDFSS-TRGLASDPVI------VRSTRLLERQAKRRRVPKPKVEFLETNHH 1002
            +A + G + +D  S + G  S P +      VRSTRLLER++K+RR   PKV   E +  
Sbjct: 184  NAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR--NPKVAVHENHGS 241

Query: 1001 RKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQ 822
            R+    RK++  +DP DPLRLFL GP             LI++IQ+LM+L+ VK RL + 
Sbjct: 242  RRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSH 301

Query: 821  FSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDL 642
               EPT++EWA AVG+SCQ L+SQ+H GN SRQKLIYAN RMVVHIAKQYQGRGLNLQDL
Sbjct: 302  LKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDL 361

Query: 641  LQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVY 462
            LQEGS+GLM SVEKFKP AGCRFA+YAYWWIRQ +RKAIFQHSRTIRLPEN+Y LL KV 
Sbjct: 362  LQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVK 421

Query: 461  EAKKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITA 282
            EAK+   Q+G+ +P++E+IA   GIT+E++++L    R+PLSMQQPVW DQ TTFQE+TA
Sbjct: 422  EAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTA 481

Query: 281  DTTIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSK 102
            DT I+ PDV V KQLMRQHVRNLL VL P+ER+IIR RFGI DG  +TLSEIG  FG SK
Sbjct: 482  DTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSK 541

Query: 101  ERVRQLESRALYKLKQCLNSQGLEAYADMLI 9
            ERVRQLE RAL+KLKQCL+S GLE+Y D+L+
Sbjct: 542  ERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  531 bits (1367), Expect = e-148
 Identities = 286/511 (55%), Positives = 368/511 (72%), Gaps = 10/511 (1%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPL-LCLKEDITFQKPLDRQLTPASSSHDESEDVDPNEHVDDIELQLLRR 1335
            VL+Q+QR++ RP    LK++ TFQ  L+++      S DE    D N+++ + E QLL +
Sbjct: 53   VLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQ 112

Query: 1334 PELWYLLASLRKKETTFPLTAV--SISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 1161
            P LWY L S +  E +   +++  SI++  E S  ++   V+ LA++A SASK+A+ + +
Sbjct: 113  PGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYE 172

Query: 1160 DAGISGINADDFSS-TRGLASDPVI------VRSTRLLERQAKRRRVPKPKVEFLETNHH 1002
            +A + G + +D  S + G  S P +      VRSTRLLER++K+RR   PKV   E +  
Sbjct: 173  NAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR--NPKVAVHENHGS 230

Query: 1001 RKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQ 822
            R+    RK++  +DP DPLRLFL GP             LI++IQ+LM+L+ VK RL + 
Sbjct: 231  RRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSH 290

Query: 821  FSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDL 642
               EPT++EWA AVG+SCQ L+SQ+H GN SRQKLIYAN RMVVHIAKQYQGRGLNLQDL
Sbjct: 291  LKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDL 350

Query: 641  LQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVY 462
            LQEGS+GLM SVEKFKP AGCRFA+YAYWWIRQ +RKAIFQHSRTIRLPEN+Y LL KV 
Sbjct: 351  LQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVK 410

Query: 461  EAKKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITA 282
            EAK+   Q+G+ +P++E+IA   GIT+E++++L    R+PLSMQQPVW DQ TTFQE+TA
Sbjct: 411  EAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTA 470

Query: 281  DTTIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSK 102
            DT I+ PDV V KQLMRQHVRNLL VL P+ER+IIR RFGI DG  +TLSEIG  FG SK
Sbjct: 471  DTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSK 530

Query: 101  ERVRQLESRALYKLKQCLNSQGLEAYADMLI 9
            ERVRQLE RAL+KLKQCL+S GLE+Y D+L+
Sbjct: 531  ERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  523 bits (1347), Expect = e-145
 Identities = 295/569 (51%), Positives = 375/569 (65%), Gaps = 11/569 (1%)
 Frame = -3

Query: 1682 MEAGRSLVSSPLQFXXXXXXXXXXXXXXXXXXXL-----HEQVXXXXXXXXXXXXXXXXX 1518
            MEAGR+L+SSP  F                         +EQ                  
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1517 XSVLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNEHVDDIELQL 1344
             SVL+Q+QR++ RPLL + KED T Q   D R +   +   +E    D ++ V D+E Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 1343 LRRPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWI 1167
            L  P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 1166 AKDAGISGINADDFSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRK 996
            A++  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK
Sbjct: 181  AENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRK 240

Query: 995  PGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFS 816
                +KL   FDPNDPLRLFL GP             LI +IQDL++L+  K++L +QF 
Sbjct: 241  ASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300

Query: 815  CEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQ 636
             EPT++       +SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQ
Sbjct: 301  REPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQ 360

Query: 635  EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEA 456
            EGS+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EA
Sbjct: 361  EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 420

Query: 455  KKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADT 276
            K+   Q+GN +P +ED+A   GITVE++E+L +  R+PLSMQQPVW DQ TTFQEITADT
Sbjct: 421  KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 480

Query: 275  TIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKER 96
             ++ PD+ V KQLMRQHVRNLL++LNP+ER I+R RFGI+DGK K+LSE+G  FGLSKER
Sbjct: 481  GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 540

Query: 95   VRQLESRALYKLKQCLNSQGLEAYADMLI 9
            VRQLESRALY+LKQ L  +    YAD+LI
Sbjct: 541  VRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  522 bits (1344), Expect = e-145
 Identities = 282/507 (55%), Positives = 359/507 (70%), Gaps = 6/507 (1%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNEHVDDIELQLLR 1338
            VL+Q+QR++ RPLL + KED T Q   D R +   +   +E    D ++ V D+E Q L 
Sbjct: 55   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 114

Query: 1337 RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 1161
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 115  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 174

Query: 1160 DAGISGINADDFSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 990
            +  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK  
Sbjct: 175  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 234

Query: 989  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCE 810
              +KL   FDPNDPLRLFL GP             LI +IQDL++L+  K++L +QF  E
Sbjct: 235  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 294

Query: 809  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 630
            PT++       +SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 295  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 354

Query: 629  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 450
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 355  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 414

Query: 449  TCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTTI 270
               Q+GN +P +ED+A   GITVE++E+L +  R+PLSMQQPVW DQ TTFQEITADT +
Sbjct: 415  LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGV 474

Query: 269  DTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERVR 90
            + PD+ V KQLMRQHVRNLL++LNP+ER I+R RFGI+DGK K+LSE+G  FGLSKERVR
Sbjct: 475  EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVR 534

Query: 89   QLESRALYKLKQCLNSQGLEAYADMLI 9
            QLESRALY+LKQ L  +    YAD+LI
Sbjct: 535  QLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  522 bits (1344), Expect = e-145
 Identities = 282/507 (55%), Positives = 359/507 (70%), Gaps = 6/507 (1%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNEHVDDIELQLLR 1338
            VL+Q+QR++ RPLL + KED T Q   D R +   +   +E    D ++ V D+E Q L 
Sbjct: 52   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 111

Query: 1337 RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 1161
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 112  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 171

Query: 1160 DAGISGINADDFSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 990
            +  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK  
Sbjct: 172  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 231

Query: 989  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCE 810
              +KL   FDPNDPLRLFL GP             LI +IQDL++L+  K++L +QF  E
Sbjct: 232  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 291

Query: 809  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 630
            PT++       +SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 292  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 351

Query: 629  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 450
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 352  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 411

Query: 449  TCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTTI 270
               Q+GN +P +ED+A   GITVE++E+L +  R+PLSMQQPVW DQ TTFQEITADT +
Sbjct: 412  LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGV 471

Query: 269  DTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERVR 90
            + PD+ V KQLMRQHVRNLL++LNP+ER I+R RFGI+DGK K+LSE+G  FGLSKERVR
Sbjct: 472  EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVR 531

Query: 89   QLESRALYKLKQCLNSQGLEAYADMLI 9
            QLESRALY+LKQ L  +    YAD+LI
Sbjct: 532  QLESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  516 bits (1328), Expect = e-143
 Identities = 293/572 (51%), Positives = 380/572 (66%), Gaps = 14/572 (2%)
 Frame = -3

Query: 1682 MEAGRSLVSSPLQFXXXXXXXXXXXXXXXXXXXL-HEQVXXXXXXXXXXXXXXXXXXSVL 1506
            MEA R+L+S P  F                   + HEQ                   SVL
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 1505 IQDQRNDSRPLLCL---KEDITFQKPLDRQLTPASSSHDESEDVDPNEHVDDIELQLLRR 1335
            +Q+QR+D RPL  L   KED  +    D+Q     +S +E E+   N      E +LL+ 
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNE-ENASNNFGQLGFEKKLLQW 119

Query: 1334 PELWYLLASLRKKETTFPLTAV-SISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 1158
            P+L  LL+ L  +E     + + S+++ ++E   +E  ++V LA++A SASK+A  +++D
Sbjct: 120  PDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSED 179

Query: 1157 AGISGINADDFSSTRGLAS---------DPVIVRSTRLLERQAKRRRVPKPKVEFLETNH 1005
              +     D  S++ G A+         + V VRSTR LERQ+KRRRV +PKV   ET  
Sbjct: 180  LKLD--LDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRV-QPKVTIRETYS 236

Query: 1004 HRKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHA 825
             R+    RKL   FDPNDPLRLFL GP             L  ++Q+LM+L+ VK++L +
Sbjct: 237  SRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQS 296

Query: 824  QFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQD 645
            QF  EPT++EWA A+G+ C +L++++H GN SR KLIYAN RMVVHIAKQYQ RGL+LQD
Sbjct: 297  QFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQD 356

Query: 644  LLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKV 465
            LLQEGS+GLMKSVE+FKPQ GCRFATYAYWWIRQ IRK+I QHSRT+RLPEN++ LLSKV
Sbjct: 357  LLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKV 416

Query: 464  YEAKKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEIT 285
             +AKK+  ++GN  PS+E++A   GITVE+++KL +T R+PLSMQQ VW+DQ  TFQE+T
Sbjct: 417  LDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVT 476

Query: 284  ADTTIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLS 105
             DT I+ PDV V KQLMRQHVRNLLSVL+PRER II+ RFGI++ K+ +LSEIG  FGLS
Sbjct: 477  PDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMFGLS 536

Query: 104  KERVRQLESRALYKLKQCLNSQGLEAYADMLI 9
            KERVRQLESRALYKLKQCLN  GL AY D+L+
Sbjct: 537  KERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  510 bits (1313), Expect = e-142
 Identities = 282/505 (55%), Positives = 353/505 (69%), Gaps = 8/505 (1%)
 Frame = -3

Query: 1502 QDQRNDSRPLLCLKEDITFQKPLDRQLTPASSSH-DESEDVDPNEHVDDIELQLLRRPEL 1326
            + Q  +   L  +KE+ T    +DR+L  A+SS  +E++ VD  ++++ +++QLLR P  
Sbjct: 59   EQQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGP 118

Query: 1325 WYLLAS--LRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDAG 1152
             Y      L+ K    P     + SK ++    E   VV LAR+A  AS++A  +A+D+ 
Sbjct: 119  SYSFPPYYLKGKGPLSP-NKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAEDSK 177

Query: 1151 I-SGINADDFSSTRGLASDPV----IVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGS 987
            +    N  +F ST  L  D +     VRSTR  ERQ+++R  PKP  +  ETN   +P  
Sbjct: 178  LLDDSNFPNFLSTN-LVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPDV 236

Query: 986  HRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEP 807
             RK++   D NDPLR+FL GP             LI+KIQ  MKLQ VK +L  QF+ EP
Sbjct: 237  RRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEP 296

Query: 806  TILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGS 627
            T +EWA A GI+ + LKSQ+  G  SR+KLI AN RMVVHIAKQYQGRGLNLQDLLQEGS
Sbjct: 297  TSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGS 356

Query: 626  LGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKT 447
            +GLMKSVEKFKPQAGCRF TYAYWWIRQ +RKAIFQHSRTIRLPEN+Y LLSKV +AKK 
Sbjct: 357  MGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKE 416

Query: 446  CFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTTID 267
            C QQGNR P++EDIA+CAG++VER++ L    R PLSMQQ VW DQ TTFQEITAD  I+
Sbjct: 417  CIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIE 476

Query: 266  TPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERVRQ 87
             P++ V+KQLMR+H+R LL+VL+P+ERKIIR RFGI DGK K+LSEIG  FGLSKERVRQ
Sbjct: 477  APELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVRQ 536

Query: 86   LESRALYKLKQCLNSQGLEAYADML 12
            LE+RALYKLKQ LN  GL+AY+D+L
Sbjct: 537  LETRALYKLKQNLNKHGLDAYSDLL 561


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  506 bits (1303), Expect = e-140
 Identities = 280/494 (56%), Positives = 352/494 (71%), Gaps = 9/494 (1%)
 Frame = -3

Query: 1466 LKEDITFQKPLDRQLTPASSSH-DESEDVDPNEHVDDIELQLLRRPELWYLLAS--LRKK 1296
            +KE+ T    +DR+L  A+SS  +E++ VD  ++++ +++QLL  P   Y      L+ K
Sbjct: 71   VKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYSFPPYYLKGK 130

Query: 1295 ETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDAGI-SGINADDFSS 1119
                P     + SK ++    E   VV LAR+A  ASK+A  +A+D+ +    +  +F S
Sbjct: 131  GPLSP-NKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDSKLLDDSHFPNFLS 189

Query: 1118 TRGLASDPV----IVRSTRLLERQAKRRRVPKPKVEFLETNHHR-KPGSHRKLDSRFDPN 954
            T  L  D +     VRSTR +ERQ+++R  PKP  E  ETN+   +P   RK++   D N
Sbjct: 190  TH-LVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESIDLN 248

Query: 953  DPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGI 774
            DPLR+FL GP             LI+KIQ  MKLQ VK +L  QF+ EPT LEWA A GI
Sbjct: 249  DPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEAAGI 308

Query: 773  SCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFK 594
            + + LKSQ+  G  SR+KLI AN RMVVHIAKQYQGRGLNLQDLLQEGS+GLMKSVEKFK
Sbjct: 309  TSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFK 368

Query: 593  PQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSR 414
            PQAGCRF TYAYWWIRQ +RKAIFQHSRTIRLPEN+Y LLSKV +AK+ C +QGNR+P++
Sbjct: 369  PQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIRQGNRHPTK 428

Query: 413  EDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTTIDTPDVGVTKQLM 234
            EDIA+CAG++VER++ L    R PLSMQQ VW DQ TTFQEITAD  I+ P++ V+KQLM
Sbjct: 429  EDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLM 488

Query: 233  RQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERVRQLESRALYKLKQ 54
            R+H+R LL+VL+P+ERKIIR RFGI DGK K+LSEIGA FGLSKERVRQLE+RALYKLKQ
Sbjct: 489  RRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKERVRQLETRALYKLKQ 548

Query: 53   CLNSQGLEAYADML 12
             LN  GL+AY+D+L
Sbjct: 549  NLNKHGLDAYSDLL 562


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  506 bits (1302), Expect = e-140
 Identities = 280/509 (55%), Positives = 355/509 (69%), Gaps = 8/509 (1%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNEHVDDIELQLLR 1338
            VL+Q+QR++ RPLL + KED TFQ  +D +Q+ P +S        D      D+  QL+ 
Sbjct: 62   VLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTS--------DQEGICSDVLDQLIL 113

Query: 1337 RPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK- 1161
               L            ++ LT  SI++ ++E   +E  +V+ LAR+A SASK+A  +A+ 
Sbjct: 114  HSNL------------SWSLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQK 161

Query: 1160 -----DAGISGINADDFSSTRGLASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRK 996
                 D   +G+   D S+      +   VRSTR LERQ+K RRV K K  F E    R+
Sbjct: 162  CANLDDTVSTGLEPTDLSNFS--LEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYSSRR 219

Query: 995  PGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFS 816
             G  +K++  FDP DPLRLFL GP             LI ++QDLM L+ VK +   QF 
Sbjct: 220  AGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFG 279

Query: 815  CEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQ 636
             +PT++EWA AVG+S   ++SQ+H GN SR+KLI AN RMVVHIAKQYQGRGL+LQDLLQ
Sbjct: 280  RDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQ 339

Query: 635  EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEA 456
            EGS+GLMKS+EKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPEN+Y  L KV EA
Sbjct: 340  EGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEA 399

Query: 455  KKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADT 276
            K++   +GN NP++E++A   GIT  R+E+L Y AR+PLSMQQ VW DQ TTFQEITAD 
Sbjct: 400  KRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADI 459

Query: 275  TIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKER 96
             ++ P++ V KQLMR+HV +LL++LNPRERKIIR R+GI+DGK+K+LSEIG+ FGLSKER
Sbjct: 460  EVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKER 519

Query: 95   VRQLESRALYKLKQCLNSQGLEAYADMLI 9
            VRQLESRALYKLKQCL S GLEAYAD+L+
Sbjct: 520  VRQLESRALYKLKQCLASHGLEAYADLLV 548


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  503 bits (1296), Expect = e-140
 Identities = 271/501 (54%), Positives = 349/501 (69%), Gaps = 2/501 (0%)
 Frame = -3

Query: 1508 LIQDQRNDSRPLL-CLKEDITFQKPLDRQLTPASSSHDESEDVDPNEHVDDIELQLLRRP 1332
            L Q+Q ++ RP    LK+D + Q  L+R+L   S   DE    D +  + +++ Q +  P
Sbjct: 61   LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 1331 ELWYLLASLRKKETTFP-LTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDA 1155
             L      ++ +E     +   S ++  E     E ++V+ LA++A SASK+A  +  + 
Sbjct: 121  GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 1154 GISGINADDFSSTRGLASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKL 975
             + G + D  S    L+ +   VRSTRL +R++K+R+VPK      E ++ R   S RK 
Sbjct: 181  ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240

Query: 974  DSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILE 795
              +FDPNDPLRLFL GP             LI++IQDLM L  VK RL +QF  EPT++E
Sbjct: 241  SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300

Query: 794  WAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLM 615
            WA A+GI+CQ L+SQ+H+   SR+KLI AN RMVVHIAKQYQGRGL+L DLLQ GSLGLM
Sbjct: 301  WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360

Query: 614  KSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQ 435
            KSVEKFKPQAGCRF +YAYWWIR  I KAIFQHSRTIRLPEN+Y LL KV EAK    + 
Sbjct: 361  KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420

Query: 434  GNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTTIDTPDV 255
            GN  PS+E++AA  GITVER +KL + +R+P S+QQPVW DQ TTFQEITAD+ +DTPDV
Sbjct: 421  GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480

Query: 254  GVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERVRQLESR 75
             V ++LMR+H+RNLLS+L+P+ER+IIR RFGI+DG++KTL EIG  FGLSKERVRQLE+R
Sbjct: 481  SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540

Query: 74   ALYKLKQCLNSQGLEAYADML 12
            ALYKLK+C NSQGL AYAD+L
Sbjct: 541  ALYKLKRCCNSQGLGAYADLL 561


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  502 bits (1292), Expect = e-139
 Identities = 291/559 (52%), Positives = 353/559 (63%), Gaps = 2/559 (0%)
 Frame = -3

Query: 1682 MEAGRSLVSSPLQFXXXXXXXXXXXXXXXXXXXLHEQVXXXXXXXXXXXXXXXXXXSVLI 1503
            MEAGR+L+SS   F                     EQ                   SVL+
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLTSSVLIL---REQATPAVSSIPTTSTAQHFPTSVLL 57

Query: 1502 QDQRNDSRPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDP-NEHVDDIELQLLRRPE 1329
            Q+QR++ RPL  + KED   Q  LDR+ T   +S  E +D D  ++ V++ E QL   P 
Sbjct: 58   QEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPA 117

Query: 1328 LWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDAGI 1149
             W L   L   E T                     +V+ LA+ A SASK A ++A D   
Sbjct: 118  YWNLTDKLIDVEPT---------------------NVINLAKRALSASKHAAFLA-DNNT 155

Query: 1148 SGINADDFSSTRGLASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKLDS 969
               N    SS+     +  IVRS R L RQ+  RR PK K    ET   +     ++L  
Sbjct: 156  DLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQKRLSQ 215

Query: 968  RFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWA 789
             FDPNDPLRLFL GP             LI +IQDLM L+ VK RL +QF  EPT++EWA
Sbjct: 216  GFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWA 275

Query: 788  AAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKS 609
             AVG+SC  LK Q+H GN SR+KLI AN RMVVHIAK+YQ RGL LQDLLQEG++GLMKS
Sbjct: 276  QAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKS 335

Query: 608  VEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGN 429
            +EKFKPQAGCRFATYAYWWIRQ I KAIFQHSRTIRLPEN+YGLL KV EAK++  Q+GN
Sbjct: 336  IEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGN 395

Query: 428  RNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTTIDTPDVGV 249
              P+ E+IA   GI ++++EKL    R PLSMQQ VW DQ+TTFQEITADT I+ PD+ V
Sbjct: 396  HQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSV 455

Query: 248  TKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERVRQLESRAL 69
             KQLMR+H+R LL++L+ +ER+IIR RFGI+DGKQK+LSEIG  FGLSKERVRQLESRAL
Sbjct: 456  AKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRAL 515

Query: 68   YKLKQCLNSQGLEAYADML 12
            YKLKQC+ S GL+AYAD+L
Sbjct: 516  YKLKQCVGSHGLDAYADLL 534


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  494 bits (1272), Expect = e-137
 Identities = 265/503 (52%), Positives = 343/503 (68%), Gaps = 2/503 (0%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDPNEHVDDIELQLLRR 1335
            VL+Q+QR++ +PLL + KED T Q  L+R+   + +   E    D N+ V + E   +  
Sbjct: 56   VLLQEQRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDTLEDYNQFVWEFERPSVHW 115

Query: 1334 PELWYLLASLRKK-ETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 1158
            P  W++L SL+ K + +  LT  +      +   +E    + LA++A  ASK+A  +A++
Sbjct: 116  PGFWHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEE 175

Query: 1157 AGISGINADDFSSTRGLASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRK 978
            + + G ++DD  S   L      VRSTRLLER++KRR+VP+  V F E   +R     ++
Sbjct: 176  SKLVGTDSDDMLSVSFLGKGDKTVRSTRLLERRSKRRKVPESSVLFYENPRNRAADIRKR 235

Query: 977  LDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTIL 798
            L    + +DPLRLFL GP             LI ++QDL+KL+ VK RL ++F  EPT++
Sbjct: 236  LSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSEFGREPTLV 295

Query: 797  EWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGL 618
            EWA AVG+SC+ L+SQI  G  SR+KLI AN R+VVHIAKQYQGRG+ +QDL+QEGS+GL
Sbjct: 296  EWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDLMQEGSMGL 355

Query: 617  MKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQ 438
            MKSVEKFKPQ GCRFA+YAYWWIRQ                EN+Y LL KV EAK++  Q
Sbjct: 356  MKSVEKFKPQVGCRFASYAYWWIRQ---------------TENVYTLLGKVLEAKRSSIQ 400

Query: 437  QGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTTFQEITADTTIDTPD 258
            +GN NPS+ED+A   GITVE++ KL Y  R+PLSMQQPVW DQSTTFQE+TADT I+ PD
Sbjct: 401  EGNHNPSKEDLATRVGITVEKLNKLLYMTRIPLSMQQPVWADQSTTFQEVTADTRIEIPD 460

Query: 257  VGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGAGFGLSKERVRQLES 78
            V V KQ+MRQHVR LL  LN RER+IIR RFGI+DG QK+LSEIG  +GLSKERVRQLES
Sbjct: 461  VSVAKQMMRQHVRGLLRSLNVRERQIIRLRFGIEDGNQKSLSEIGRMYGLSKERVRQLES 520

Query: 77   RALYKLKQCLNSQGLEAYADMLI 9
            RALYKLKQCL SQ LEAYAD+++
Sbjct: 521  RALYKLKQCLGSQDLEAYADLIV 543


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
            max]
          Length = 574

 Score =  489 bits (1260), Expect = e-135
 Identities = 273/517 (52%), Positives = 354/517 (68%), Gaps = 16/517 (3%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDPNEHVDDIELQLLRR 1335
            VL+Q+QR++ RPLL + KED T Q  L  +       H+E+   + ++ V D    L   
Sbjct: 60   VLLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKHLHYW 119

Query: 1334 PELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDA 1155
            P L  LLAS +  E +   T   +SS  +  T     + V+LA++A S SK+   + +D 
Sbjct: 120  PHLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVED- 178

Query: 1154 GISGINADDFSSTRGLAS----DPVI-----VRSTRLLERQAKRRRVPKPKVEFLETNHH 1002
             +  I ADD S   GLAS    DP I     VRSTRLLER++K+R+VPK KV   ET   
Sbjct: 179  -LKSIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 237

Query: 1001 RKPGSHRKL------DSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVK 840
            RK  +H KL      +   D NDPL  FLRGP             LI +IQDL++L+ VK
Sbjct: 238  RKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVK 297

Query: 839  TRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRG 660
            T+L +QF  EPT+ EWA  VG++C+ L +Q+  G+ SR+KLI AN RMVVH+AK YQGRG
Sbjct: 298  TKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRG 357

Query: 659  LNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYG 480
            L+LQDLLQEGS+GLMKSVEKF P  G RF  YA+WWIRQ IRKA+F+HSRTIRLPE ++ 
Sbjct: 358  LSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFI 417

Query: 479  LLSKVYEAKKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTT 300
            LL KV EAKK   Q+GN +P++E++A   G+TVE+++KL ++AR+P+SMQQ VW DQ+TT
Sbjct: 418  LLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTT 477

Query: 299  FQEITADTTIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGA 120
            FQEITAD T++  DV V KQLMRQHV N+LS+L+P+ER+IIR R+G +DG+QK+LSEIG 
Sbjct: 478  FQEITADPTVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGD 537

Query: 119  GFGLSKERVRQLESRALYKLKQCLNSQGLEAYADMLI 9
             FGLSKERVRQLE RALYKLK+CL  QGL+AY D+L+
Sbjct: 538  IFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 574


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  486 bits (1251), Expect = e-134
 Identities = 273/517 (52%), Positives = 352/517 (68%), Gaps = 16/517 (3%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDPNEHVDDIELQLLRR 1335
            VL+ +QR++ RPLL + KED T Q  L  +     + H+E+   + ++ V D    L   
Sbjct: 61   VLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHW 120

Query: 1334 PELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDA 1155
            P L YLL S +  E     T   +S   E        + V+LA++A S SK+   + +D 
Sbjct: 121  PNLQYLLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVED- 179

Query: 1154 GISGINADDFSSTRGLAS----DPVI-----VRSTRLLERQAKRRRVPKPKVEFLETNHH 1002
             +  I ADD S   GLAS    DP I     VRSTRLLER++K+R+VPK KV   ET   
Sbjct: 180  -LKSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 238

Query: 1001 RKPGSHRKL------DSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVK 840
            RK  +  KL      +   D +DPLRLFL GP             LI +IQDL++L+ VK
Sbjct: 239  RKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVK 298

Query: 839  TRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRG 660
            T L +QF  EPT+ EWA   G++C+ L+SQ+H GN SR+KLI AN RMVVH+AK YQGRG
Sbjct: 299  TNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRG 358

Query: 659  LNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYG 480
            L+LQDLLQEGS+GLMKSVEKF P AG RF  YA+WWIRQ IRKA+F+HSRTIRLPE ++ 
Sbjct: 359  LSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFI 418

Query: 479  LLSKVYEAKKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTT 300
            LL KV EAKK   Q+GN +P++E++A   G+TVE+++KL ++AR+P+SMQQ VW DQ+TT
Sbjct: 419  LLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTT 478

Query: 299  FQEITADTTIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGA 120
            FQEITAD T++  DV V KQLMR+HV N+LSVL+P+ER+IIR R+G +DG+QK+LSEIG 
Sbjct: 479  FQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGD 538

Query: 119  GFGLSKERVRQLESRALYKLKQCLNSQGLEAYADMLI 9
             FGLSKERVRQLE RALYKLK+CL  QGL+AY D+L+
Sbjct: 539  IFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 575


>ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phaseolus vulgaris]
            gi|561017549|gb|ESW16353.1| hypothetical protein
            PHAVU_007G149600g [Phaseolus vulgaris]
          Length = 582

 Score =  484 bits (1246), Expect = e-134
 Identities = 271/517 (52%), Positives = 351/517 (67%), Gaps = 16/517 (3%)
 Frame = -3

Query: 1511 VLIQDQRNDSRPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDPNEHVDDIELQLLRR 1335
            VL+Q+QR++ RPLL + KED T Q  L+ +     + H+E+   + ++ V D    L   
Sbjct: 68   VLLQEQRDEYRPLLHMSKEDKTSQAILNTRQMDMDTVHEENNTGNADQIVLDFRKHLHLW 127

Query: 1334 PELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDA 1155
            P L  LL S +  E     T   +S  SE  T     + V+LA++A S +K+   + +  
Sbjct: 128  PRLQNLLNSSQTGEIAASSTLQHVSVDSERRTDGVQCNGVSLAKKALSTAKQTSSVVE-- 185

Query: 1154 GISGINADDFSSTRGLAS----DPVI-----VRSTRLLERQAKRRRVPKPKVEFLETNHH 1002
            G+  I ADD S   GLAS    DP +     VRSTRLLER+AK+R+V K  V+  ET   
Sbjct: 186  GLKSIKADDDSIPFGLASTGLADPSVGRNKTVRSTRLLERRAKQRKVSKSIVKDDETYLT 245

Query: 1001 RKPGSH------RKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVK 840
            RK  +       +K++  FD ND LR+FLRGP             LI KIQDL+KL+ +K
Sbjct: 246  RKDDAQERIRKEKKINEEFDQNDTLRMFLRGPETKQLLTLEQESELISKIQDLLKLEELK 305

Query: 839  TRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRG 660
            TRL +QF  EPT+ EWA   G++C+ L SQ+  GN SR+KLI AN RMVVH+AK YQGRG
Sbjct: 306  TRLQSQFGREPTMAEWAEGAGLNCRMLHSQLRHGNRSREKLIQANLRMVVHVAKSYQGRG 365

Query: 659  LNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYG 480
            L+LQDLLQEGS+GLMKSVEKF P AG RF  YA+WWIRQ IRKA+F+HSRTIRLPE +Y 
Sbjct: 366  LSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYI 425

Query: 479  LLSKVYEAKKTCFQQGNRNPSREDIAACAGITVERMEKLFYTARVPLSMQQPVWMDQSTT 300
             L K+ EAKK   Q+GN +P++E++A   GITVE+++KL Y AR+P+SMQQ VW DQ TT
Sbjct: 426  QLGKIMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLYAARIPISMQQTVWADQDTT 485

Query: 299  FQEITADTTIDTPDVGVTKQLMRQHVRNLLSVLNPRERKIIRSRFGIDDGKQKTLSEIGA 120
            FQEITAD T++  D+ V KQLMR+HV N+L++L P+ERKIIR R+G +DG+Q++LSEIG 
Sbjct: 486  FQEITADPTVEATDLSVEKQLMRRHVLNVLTILRPKERKIIRLRYGFEDGEQRSLSEIGD 545

Query: 119  GFGLSKERVRQLESRALYKLKQCLNSQGLEAYADMLI 9
             FGLSKERVRQLE RALYKLK+CL  QGL+AY D+L+
Sbjct: 546  IFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 582