BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00010729
         (900 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...   490   e-136
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...   488   e-135
ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III s...   488   e-135
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...   488   e-135
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...   486   e-135
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...   483   e-134
ref|XP_007010803.1| DNA-directed RNA polymerase isoform 5 [Theob...   482   e-134
ref|XP_007010802.1| DNA-directed RNA polymerase isoform 4 [Theob...   482   e-134
ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theob...   482   e-134
ref|XP_007010800.1| DNA-directed RNA polymerase isoform 2 [Theob...   482   e-134
ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theob...   482   e-134
gb|EYU26925.1| hypothetical protein MIMGU_mgv1a000512mg [Mimulus...   480   e-133
ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III s...   478   e-132
ref|XP_007028777.1| DNA-directed RNA polymerase [Theobroma cacao...   471   e-130
ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr...   471   e-130
ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theob...   469   e-130
ref|XP_007010804.1| DNA-directed RNA polymerase isoform 6 [Theob...   469   e-130
dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...   467   e-129
ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Caps...   467   e-129
ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis t...   467   e-129

>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score =  490 bits (1262), Expect = e-136
 Identities = 238/301 (79%), Positives = 265/301 (88%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQLCRMDSL+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 686  YQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 745

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYENT-SDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ +AV Q+YEN  SDRI+ P + G DA++MQ
Sbjct: 746  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAERMQ 805

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+AAPGEII+P+DIY+NK+SPI                YK S+ T+  PEGE +V
Sbjct: 806  ILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDSAYKPSRQTFKGPEGEASV 865

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALCSDK++N+CIKF+IR TRRPEVGDKFSSRHGQKGVCG I+QQEDFPFSERG+CP
Sbjct: 866  VDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICP 925

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGSAF EPSGHADKVE IS+TLVKHG
Sbjct: 926  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVETISKTLVKHG 985

Query: 898  F 900
            F
Sbjct: 986  F 986


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score =  488 bits (1256), Expect = e-135
 Identities = 241/301 (80%), Positives = 261/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQL RMD L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 727  YQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 786

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ +A+CQKYEN TSDRII P+R GP+AD+MQ
Sbjct: 787  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYENGTSDRIIKPQRQGPEADRMQ 846

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+AAPGE IR  DIY+NK+SP                 YKSSK TY  PEGE  V
Sbjct: 847  ILDDDGMAAPGETIRNHDIYINKESPTVTRTPVTSPMGLPDSAYKSSKQTYKGPEGETAV 906

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVAL SD++NN+ IKFMIR TRRPE+GDKFSSRHGQKGVCG IVQQEDFPFSERG+CP
Sbjct: 907  VDRVALYSDRNNNLSIKFMIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 966

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLGSKAGVSCGRFHYGSAF EPSGHAD V+ ISETLVKHG
Sbjct: 967  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGEPSGHADTVDAISETLVKHG 1026

Query: 898  F 900
            F
Sbjct: 1027 F 1027


>ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X3 [Citrus sinensis]
          Length = 1058

 Score =  488 bits (1255), Expect = e-135
 Identities = 234/301 (77%), Positives = 265/301 (88%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I +NQLCRMDSL+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 602  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 661

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIV+K+ TA+ QKY N TSDRI+ P R GP A++MQ
Sbjct: 662  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 721

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+AAPGEII+P+D+Y+NK+SP++              +Y+S++ TY  P+GE  V
Sbjct: 722  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 781

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALCSDK+ ++CIKF+IR TRRPE+GDKFSSRHGQKGVCG IVQQEDFPFSERG+CP
Sbjct: 782  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 841

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGSAF EPSGHAD VE ISETLVKHG
Sbjct: 842  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 901

Query: 898  F 900
            F
Sbjct: 902  F 902


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score =  488 bits (1255), Expect = e-135
 Identities = 234/301 (77%), Positives = 265/301 (88%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I +NQLCRMDSL+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIV+K+ TA+ QKY N TSDRI+ P R GP A++MQ
Sbjct: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+AAPGEII+P+D+Y+NK+SP++              +Y+S++ TY  P+GE  V
Sbjct: 813  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 872

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALCSDK+ ++CIKF+IR TRRPE+GDKFSSRHGQKGVCG IVQQEDFPFSERG+CP
Sbjct: 873  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGSAF EPSGHAD VE ISETLVKHG
Sbjct: 933  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 992

Query: 898  F 900
            F
Sbjct: 993  F 993


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score =  486 bits (1252), Expect = e-135
 Identities = 233/301 (77%), Positives = 265/301 (88%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I +NQLCRMDSL+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIV+K+ TA+ QKY N TSDRI+ P R GP +++MQ
Sbjct: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGSERMQ 812

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+AAPGEII+P+D+Y+NK+SP++              +Y+S++ TY  P+GE  V
Sbjct: 813  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 872

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALCSDK+ ++CIKF+IR TRRPE+GDKFSSRHGQKGVCG IVQQEDFPFSERG+CP
Sbjct: 873  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGSAF EPSGHAD VE ISETLVKHG
Sbjct: 933  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 992

Query: 898  F 900
            F
Sbjct: 993  F 993


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score =  483 bits (1242), Expect = e-134
 Identities = 239/301 (79%), Positives = 260/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQL RMD L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 697  YQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 756

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ +A+CQKYEN TSDRII P+R G +ADKMQ
Sbjct: 757  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYENGTSDRIIKPQRQGFEADKMQ 816

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+AAPGE IR  DIY+NK+SP                 YK+S+ TY  PEGE  V
Sbjct: 817  ILDDDGMAAPGETIRNHDIYINKESPTVTRTPITSPMGLPDSAYKTSRQTYKGPEGETAV 876

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVAL SD++NN+ IKFMIR TRRPE+GDKFSSRHGQKGVCG IVQQEDFPFSERG+CP
Sbjct: 877  VDRVALYSDRNNNLSIKFMIRHTRRPEIGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 936

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLGSKAGVSCGRFHYGSAF EPSGHAD V+ ISETLVKHG
Sbjct: 937  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGEPSGHADTVDSISETLVKHG 996

Query: 898  F 900
            F
Sbjct: 997  F 997


>ref|XP_007010803.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao]
            gi|508727716|gb|EOY19613.1| DNA-directed RNA polymerase
            isoform 5 [Theobroma cacao]
          Length = 1006

 Score =  482 bits (1240), Expect = e-134
 Identities = 233/301 (77%), Positives = 261/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQLCRMD+L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 697  YQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 756

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMKR +AV QKYE   SDRI+ P+R GP +++MQ
Sbjct: 757  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQ 816

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDGIA PGEIIRP+DIY+NK+S I                Y+ ++ TY  PEGE  V
Sbjct: 817  ILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAYRPARQTYKGPEGESCV 876

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALC+D+++N+ IKF+IR TRRPEVGDKFSSRHGQKGVCG I+QQEDFPFSERG+CP
Sbjct: 877  VDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICP 936

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGSAF EPSGHAD+VE ISETL+KHG
Sbjct: 937  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLIKHG 996

Query: 898  F 900
            F
Sbjct: 997  F 997


>ref|XP_007010802.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
            gi|508727715|gb|EOY19612.1| DNA-directed RNA polymerase
            isoform 4 [Theobroma cacao]
          Length = 1034

 Score =  482 bits (1240), Expect = e-134
 Identities = 233/301 (77%), Positives = 261/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQLCRMD+L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 702  YQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 761

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMKR +AV QKYE   SDRI+ P+R GP +++MQ
Sbjct: 762  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQ 821

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDGIA PGEIIRP+DIY+NK+S I                Y+ ++ TY  PEGE  V
Sbjct: 822  ILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAYRPARQTYKGPEGESCV 881

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALC+D+++N+ IKF+IR TRRPEVGDKFSSRHGQKGVCG I+QQEDFPFSERG+CP
Sbjct: 882  VDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICP 941

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGSAF EPSGHAD+VE ISETL+KHG
Sbjct: 942  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLIKHG 1001

Query: 898  F 900
            F
Sbjct: 1002 F 1002


>ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508727714|gb|EOY19611.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1153

 Score =  482 bits (1240), Expect = e-134
 Identities = 233/301 (77%), Positives = 261/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQLCRMD+L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 697  YQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 756

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMKR +AV QKYE   SDRI+ P+R GP +++MQ
Sbjct: 757  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQ 816

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDGIA PGEIIRP+DIY+NK+S I                Y+ ++ TY  PEGE  V
Sbjct: 817  ILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAYRPARQTYKGPEGESCV 876

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALC+D+++N+ IKF+IR TRRPEVGDKFSSRHGQKGVCG I+QQEDFPFSERG+CP
Sbjct: 877  VDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICP 936

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGSAF EPSGHAD+VE ISETL+KHG
Sbjct: 937  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLIKHG 996

Query: 898  F 900
            F
Sbjct: 997  F 997


>ref|XP_007010800.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
            gi|508727713|gb|EOY19610.1| DNA-directed RNA polymerase
            isoform 2 [Theobroma cacao]
          Length = 1011

 Score =  482 bits (1240), Expect = e-134
 Identities = 233/301 (77%), Positives = 261/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQLCRMD+L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 702  YQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 761

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMKR +AV QKYE   SDRI+ P+R GP +++MQ
Sbjct: 762  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQ 821

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDGIA PGEIIRP+DIY+NK+S I                Y+ ++ TY  PEGE  V
Sbjct: 822  ILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAYRPARQTYKGPEGESCV 881

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALC+D+++N+ IKF+IR TRRPEVGDKFSSRHGQKGVCG I+QQEDFPFSERG+CP
Sbjct: 882  VDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICP 941

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGSAF EPSGHAD+VE ISETL+KHG
Sbjct: 942  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLIKHG 1001

Query: 898  F 900
            F
Sbjct: 1002 F 1002


>ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508727712|gb|EOY19609.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1158

 Score =  482 bits (1240), Expect = e-134
 Identities = 233/301 (77%), Positives = 261/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQLCRMD+L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 702  YQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 761

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMKR +AV QKYE   SDRI+ P+R GP +++MQ
Sbjct: 762  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQ 821

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDGIA PGEIIRP+DIY+NK+S I                Y+ ++ TY  PEGE  V
Sbjct: 822  ILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAYRPARQTYKGPEGESCV 881

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALC+D+++N+ IKF+IR TRRPEVGDKFSSRHGQKGVCG I+QQEDFPFSERG+CP
Sbjct: 882  VDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICP 941

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGSAF EPSGHAD+VE ISETL+KHG
Sbjct: 942  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLIKHG 1001

Query: 898  F 900
            F
Sbjct: 1002 F 1002


>gb|EYU26925.1| hypothetical protein MIMGU_mgv1a000512mg [Mimulus guttatus]
          Length = 1103

 Score =  480 bits (1236), Expect = e-133
 Identities = 238/301 (79%), Positives = 256/301 (85%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQ CR D+LM LLVYPQRPLLTTR+IELV +DKLGAGQNA+VAVM
Sbjct: 647  YQCAMGKQAMGNIAYNQYCRTDTLMCLLVYPQRPLLTTRTIELVSFDKLGAGQNATVAVM 706

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRM +VC KYEN TSDRII P+R+G D +KMQ
Sbjct: 707  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMVSVCLKYENSTSDRIIKPQREGQDCEKMQ 766

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+AAPG+ IR  DIY+NKQSPI                Y+SS+  Y    GE  V
Sbjct: 767  ILDDDGLAAPGQTIRADDIYINKQSPIVTRVPVKSPMALPDSSYRSSREHYKGSVGESAV 826

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            +DRVAL SD+DNNM IKFM R TRRPEVGDKFSSRHGQKGVCG IVQQEDFPFSERG+CP
Sbjct: 827  IDRVALFSDRDNNMKIKFMTRQTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 886

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLGSKAGVSCGRFHYGSAF EPSGHADKVE ISETLVKHG
Sbjct: 887  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGEPSGHADKVETISETLVKHG 946

Query: 898  F 900
            F
Sbjct: 947  F 947


>ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            tuberosum]
          Length = 1151

 Score =  478 bits (1230), Expect = e-132
 Identities = 235/301 (78%), Positives = 259/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQL RMD L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 695  YQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 754

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMK+  A+CQKY+N TSDR+I P+R G +A+KMQ
Sbjct: 755  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYAAICQKYKNLTSDRLIKPQRQGSEAEKMQ 814

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+A+PGEIIR  DIY+NK+SP                 YKSS+ TY   EGE TV
Sbjct: 815  ILDDDGLASPGEIIRNRDIYINKESPTVTITQVTSPMGLPDSAYKSSRQTYKGTEGEPTV 874

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            +DRVAL SD++NN+ IKFMIR TRRPE+GDKFSSRHGQKGVCG IVQQED PFSERG+CP
Sbjct: 875  IDRVALHSDENNNLSIKFMIRQTRRPEIGDKFSSRHGQKGVCGIIVQQEDLPFSERGICP 934

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLGSKAGVSCGRFHYGSAF EPSGHAD V+ ISETLVKHG
Sbjct: 935  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGEPSGHADTVDAISETLVKHG 994

Query: 898  F 900
            F
Sbjct: 995  F 995


>ref|XP_007028777.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508717382|gb|EOY09279.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 577

 Score =  471 bits (1213), Expect = e-130
 Identities = 232/302 (76%), Positives = 257/302 (85%), Gaps = 2/302 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMGSI YNQ  RMDS++YLL+YPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 117  YQCAMGKQAMGSIAYNQFSRMDSVLYLLLYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 176

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQK-YEN-TSDRIIGPKRDGPDADKM 354
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMK  TA+ QK YEN TSDR++ P+R GP +++M
Sbjct: 177  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKSYTAIYQKNYENGTSDRVLRPQRTGPGSERM 236

Query: 355  QILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKT 534
            QILDDDG+AAPGEII+P+DIY+NK+SPI                YK +K T+  PEGE  
Sbjct: 237  QILDDDGLAAPGEIIKPNDIYINKESPIHTTGQRVPADGQQDIGYKPAKQTFKGPEGESC 296

Query: 535  VVDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVC 714
            VVDRVA CSDK  N+CIKF+IR TRRPEVGDKFSSRHGQKGVCG I+QQEDFPFSE G+C
Sbjct: 297  VVDRVAFCSDKSENLCIKFIIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSETGIC 356

Query: 715  PDLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKH 894
            PDLIMNPHGFPSRMTIGKMIELLG KAGVSCGRF+YGSAF E SGHAD+VE ISETLVK 
Sbjct: 357  PDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFYYGSAFGEASGHADRVEAISETLVKR 416

Query: 895  GF 900
            GF
Sbjct: 417  GF 418


>ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum]
            gi|557099252|gb|ESQ39616.1| hypothetical protein
            EUTSA_v10000748mg [Eutrema salsugineum]
          Length = 1164

 Score =  471 bits (1211), Expect = e-130
 Identities = 231/301 (76%), Positives = 259/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQL RMD+L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 709  YQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 768

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYENTS-DRIIGPKRDGPDADKMQ 357
            S +GYDIEDAIVMNK+SLDRGFGRCIVMK++ A CQKY N + DRI+ P+R GPDA+KMQ
Sbjct: 769  SNTGYDIEDAIVMNKASLDRGFGRCIVMKKIVATCQKYGNDAVDRILRPQRTGPDAEKMQ 828

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDGIAAPGEIIRP+D+Y+NKQ P+D              QY+ ++  +  PEGE  V
Sbjct: 829  ILDDDGIAAPGEIIRPNDVYINKQIPVDTRDNITSPLSDS--QYRPAREYFKGPEGETQV 886

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALCSDK+ N+CIK++IR TRRPE+GDKFSSRHGQKGVCG IVQQEDFPFSERG+CP
Sbjct: 887  VDRVALCSDKNGNLCIKYIIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 946

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLGSKAGV  GRFHYGSAF E SGHADKVE IS TLVKHG
Sbjct: 947  DLIMNPHGFPSRMTVGKMIELLGSKAGVCSGRFHYGSAFGERSGHADKVETISATLVKHG 1006

Query: 898  F 900
            F
Sbjct: 1007 F 1007


>ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theobroma cacao]
            gi|508727718|gb|EOY19615.1| DNA-directed RNA polymerase
            isoform 7 [Theobroma cacao]
          Length = 1082

 Score =  469 bits (1207), Expect = e-130
 Identities = 233/324 (71%), Positives = 261/324 (80%), Gaps = 24/324 (7%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVR--------------- 135
            YQCAMGKQAMG+I YNQLCRMD+L+YLLVYPQRPLLTTR+IELV                
Sbjct: 603  YQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVSGLYVVDYSTPFCPVN 662

Query: 136  --------YDKLGAGQNASVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQK 291
                    YDKLGAGQNA+VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKR +AV QK
Sbjct: 663  CLLCFQVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQK 722

Query: 292  YEN-TSDRIIGPKRDGPDADKMQILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXX 468
            YE   SDRI+ P+R GP +++MQILDDDGIA PGEIIRP+DIY+NK+S I          
Sbjct: 723  YETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSE 782

Query: 469  XXXXXQYKSSKHTYDRPEGEKTVVDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHG 648
                  Y+ ++ TY  PEGE  VVDRVALC+D+++N+ IKF+IR TRRPEVGDKFSSRHG
Sbjct: 783  SLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHG 842

Query: 649  QKGVCGAIVQQEDFPFSERGVCPDLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGS 828
            QKGVCG I+QQEDFPFSERG+CPDLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGS
Sbjct: 843  QKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 902

Query: 829  AFREPSGHADKVEVISETLVKHGF 900
            AF EPSGHAD+VE ISETL+KHGF
Sbjct: 903  AFGEPSGHADRVEAISETLIKHGF 926


>ref|XP_007010804.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
            gi|508727717|gb|EOY19614.1| DNA-directed RNA polymerase
            isoform 6 [Theobroma cacao]
          Length = 1034

 Score =  469 bits (1207), Expect = e-130
 Identities = 233/324 (71%), Positives = 261/324 (80%), Gaps = 24/324 (7%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVR--------------- 135
            YQCAMGKQAMG+I YNQLCRMD+L+YLLVYPQRPLLTTR+IELV                
Sbjct: 702  YQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVSGLYVVDYSTPFCPVN 761

Query: 136  --------YDKLGAGQNASVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQK 291
                    YDKLGAGQNA+VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKR +AV QK
Sbjct: 762  CLLCFQVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQK 821

Query: 292  YEN-TSDRIIGPKRDGPDADKMQILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXX 468
            YE   SDRI+ P+R GP +++MQILDDDGIA PGEIIRP+DIY+NK+S I          
Sbjct: 822  YETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSE 881

Query: 469  XXXXXQYKSSKHTYDRPEGEKTVVDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHG 648
                  Y+ ++ TY  PEGE  VVDRVALC+D+++N+ IKF+IR TRRPEVGDKFSSRHG
Sbjct: 882  SLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHG 941

Query: 649  QKGVCGAIVQQEDFPFSERGVCPDLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGS 828
            QKGVCG I+QQEDFPFSERG+CPDLIMNPHGFPSRMT+GKMIELLG KAGVSCGRFHYGS
Sbjct: 942  QKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 1001

Query: 829  AFREPSGHADKVEVISETLVKHGF 900
            AF EPSGHAD+VE ISETL+KHGF
Sbjct: 1002 AFGEPSGHADRVEAISETLIKHGF 1025


>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score =  467 bits (1201), Expect = e-129
 Identities = 229/301 (76%), Positives = 259/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQL RMD+L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 717  YQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 776

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            S+SGYDIEDAIVMNKSSLDRGFGRCIVMK++ A+ QKY+N T+DRI+ P+R GPDA+KMQ
Sbjct: 777  SFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQ 836

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+A PGEIIRP+DIY+NKQ P+D              QY+ ++  +  PEGE  V
Sbjct: 837  ILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDS--QYRPAREYFKGPEGETQV 894

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALCSDK   +CIK++IR TRRPE+GDKFSSRHGQKGVCG I+QQEDFPFSE G+CP
Sbjct: 895  VDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICP 954

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLGSKAGVSCGRFHYGSAF E SGHADKVE IS TLV+ G
Sbjct: 955  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKG 1014

Query: 898  F 900
            F
Sbjct: 1015 F 1015


>ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Capsella rubella]
            gi|482548616|gb|EOA12810.1| hypothetical protein
            CARUB_v10025768mg [Capsella rubella]
          Length = 1160

 Score =  467 bits (1201), Expect = e-129
 Identities = 228/301 (75%), Positives = 259/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQL RMD+L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 706  YQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 765

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            SYSGYDIEDAIVMNKSSLDRGFGRCIVMK++ A  QKY+N T DRI+ P+R GPDA+KMQ
Sbjct: 766  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVATSQKYDNNTQDRILRPQRTGPDAEKMQ 825

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILD+DGIA+PGEIIRP+D+Y+NKQSP+D              QY+ ++  +  PEGE  V
Sbjct: 826  ILDNDGIASPGEIIRPNDVYINKQSPVDTKNKMTTQLSDS--QYRPAREYFKGPEGETQV 883

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALCS+K +++CIK++IR TRRPE+GDKFSSRHGQKGVCG I+QQEDFPFSE G+CP
Sbjct: 884  VDRVALCSNKHDHLCIKYIIRHTRRPELGDKFSSRHGQKGVCGTIIQQEDFPFSELGICP 943

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLGSKAGVSCGRFHYGSAF E  GHADKVE IS TLV  G
Sbjct: 944  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERGGHADKVETISATLVNKG 1003

Query: 898  F 900
            F
Sbjct: 1004 F 1004


>ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana]
            gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
            RPC2 [Arabidopsis thaliana]
          Length = 1161

 Score =  467 bits (1201), Expect = e-129
 Identities = 229/301 (76%), Positives = 259/301 (86%), Gaps = 1/301 (0%)
 Frame = +1

Query: 1    YQCAMGKQAMGSITYNQLCRMDSLMYLLVYPQRPLLTTRSIELVRYDKLGAGQNASVAVM 180
            YQCAMGKQAMG+I YNQL RMD+L+YLLVYPQRPLLTTR+IELV YDKLGAGQNA+VAVM
Sbjct: 707  YQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 766

Query: 181  SYSGYDIEDAIVMNKSSLDRGFGRCIVMKRMTAVCQKYEN-TSDRIIGPKRDGPDADKMQ 357
            S+SGYDIEDAIVMNKSSLDRGFGRCIVMK++ A+ QKY+N T+DRI+ P+R GPDA+KMQ
Sbjct: 767  SFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQ 826

Query: 358  ILDDDGIAAPGEIIRPSDIYLNKQSPIDXXXXXXXXXXXXXXQYKSSKHTYDRPEGEKTV 537
            ILDDDG+A PGEIIRP+DIY+NKQ P+D              QY+ ++  +  PEGE  V
Sbjct: 827  ILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDS--QYRPAREYFKGPEGETQV 884

Query: 538  VDRVALCSDKDNNMCIKFMIRDTRRPEVGDKFSSRHGQKGVCGAIVQQEDFPFSERGVCP 717
            VDRVALCSDK   +CIK++IR TRRPE+GDKFSSRHGQKGVCG I+QQEDFPFSE G+CP
Sbjct: 885  VDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICP 944

Query: 718  DLIMNPHGFPSRMTIGKMIELLGSKAGVSCGRFHYGSAFREPSGHADKVEVISETLVKHG 897
            DLIMNPHGFPSRMT+GKMIELLGSKAGVSCGRFHYGSAF E SGHADKVE IS TLV+ G
Sbjct: 945  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKG 1004

Query: 898  F 900
            F
Sbjct: 1005 F 1005