BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00010587
         (1877 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF18630.1|AC006228_1 F5J5.1 [Arabidopsis thaliana]                122   4e-38
gb|AAW57784.1| putative polyprotein [Oryza sativa Japonica Group]     110   2e-36
gb|AAN05371.1| Putative retroelement [Oryza sativa Japonica Grou...   106   2e-35
emb|CAH66897.1| OSIGBa0099L20.12 [Oryza sativa Indica Group]          107   2e-35
emb|CAE04852.2| OSJNBa0084K01.24 [Oryza sativa Japonica Group]        107   2e-35
emb|CAE05094.3| OSJNBa0009K15.14 [Oryza sativa Japonica Group]        108   2e-35
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s...   102   5e-35
gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group]     107   8e-35
gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subc...   107   1e-34
gb|ABF97883.1| retrotransposon protein, putative, unclassified [...   105   1e-34
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa Japonica Group]         103   2e-34
emb|CAH66560.1| OSIGBa0113K06.6 [Oryza sativa Indica Group]           103   2e-34
gb|AAS98452.2| putative polyprotein [Oryza sativa Japonica Group]     106   9e-34
gb|AAK00427.2| Putative copia-type pol polyprotein [Oryza sativa...   101   1e-33
gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula]    102   6e-33
gb|EXX76353.1| gag-pol fusion protein [Rhizophagus irregularis D...   104   1e-32
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]         103   2e-32
emb|CAN71148.1| hypothetical protein VITISV_040337 [Vitis vinifera]   100   2e-32
emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa Japonica Group]        108   2e-32
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]                103   4e-32

>gb|AAF18630.1|AC006228_1 F5J5.1 [Arabidopsis thaliana]
          Length = 1463

 Score =  122 bits (307), Expect(2) = 4e-38
 Identities = 67/157 (42%), Positives = 89/157 (56%), Gaps = 37/157 (23%)
 Frame = +2

Query: 404  VDVVVYRSMKRSLLYLTSTRPNILFSVYPCVRFQANPH---------------------- 517
            VD  +YR M  SLLYLT++RP++ FSV  C R+QANP                       
Sbjct: 1250 VDEKMYRGMIGSLLYLTASRPDLCFSVGVCARYQANPKQSHLNAMKWILKYVKGTTDVGL 1309

Query: 518  ---------------SDWGRDLEGRKSTSGGCCYLGNNIVSWCSKKQKCVTLSTAEAGYV 652
                           +DW  +L+ R+ST+GGC +L NN+VSW SKKQ CV+LSTAEA Y+
Sbjct: 1310 FYSKQTNQNLVGFCDADWAGNLDDRRSTTGGCFFLRNNLVSWHSKKQSCVSLSTAEAEYI 1369

Query: 653  VAGCCATQLL*LKQMIEGYKLQG*SIIVLCDNTSAIH 763
              G C TQLL +KQM+  Y +   +++V CDN SAI+
Sbjct: 1370 ALGSCCTQLLWMKQMLLDYGMTSNTLLVYCDNMSAIN 1406



 Score = 64.7 bits (156), Expect(2) = 4e-38
 Identities = 29/57 (50%), Positives = 41/57 (71%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKL 932
            I+K+PVQ   TKHID R HF++++VE KI+E+ ++ +  Q+ADIFTK LD   F  L
Sbjct: 1407 ISKNPVQHSRTKHIDIRHHFIRELVENKIVEISHVSSEKQLADIFTKSLDLNSFLNL 1463


>gb|AAW57784.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1411

 Score =  110 bits (274), Expect(2) = 2e-36
 Identities = 75/184 (40%), Positives = 90/184 (48%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KPI   + TN           VD+ +YRSM  SLLYLT++RP+I+FSV  C R
Sbjct: 1157 RFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCAR 1216

Query: 500  FQANP-------------------------------------HSDWGRDLEGRKSTSGGC 568
            FQA P                                     +SD+      RKSTSG C
Sbjct: 1217 FQAAPKECHLVAVKRILRYLKHSSNIGLWYPKGAKFKLVGYSYSDYASCKVDRKSTSGSC 1276

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ +  Y +      +LCDN
Sbjct: 1277 QMLGRSLVSWSSKKQNSVALSTAEAKYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDN 1336

Query: 749  TSAI 760
             SAI
Sbjct: 1337 DSAI 1340



 Score = 71.6 bits (174), Expect(2) = 2e-36
 Identities = 37/63 (58%), Positives = 44/63 (69%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK LD   FYKLRN 
Sbjct: 1342 IANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDETCFYKLRNE 1401

Query: 942  LGM 950
            L +
Sbjct: 1402 LNV 1404


>gb|AAN05371.1| Putative retroelement [Oryza sativa Japonica Group]
            gi|31431391|gb|AAP53179.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1299

 Score =  106 bits (265), Expect(2) = 2e-35
 Identities = 73/184 (39%), Positives = 89/184 (48%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KPI   ++TN           VD+ +Y SM  SLLYLT++RP+I+FSV  C R
Sbjct: 1045 RFGLEDAKPIKTPMVTNGHLDLDEGGKPVDLKLYHSMIGSLLYLTASRPDIMFSVCMCAR 1104

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQ  P                                      SD+      RKSTSG C
Sbjct: 1105 FQVAPKECHLVAVKRILRYLKHSSIIGLWYPKGAKFKLVGYSDSDYAGCKVDRKSTSGSC 1164

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ++  Y +      +LCDN
Sbjct: 1165 QMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQILLDYGISFTKTPLLCDN 1224

Query: 749  TSAI 760
             SAI
Sbjct: 1225 DSAI 1228



 Score = 72.0 bits (175), Expect(2) = 2e-35
 Identities = 37/63 (58%), Positives = 44/63 (69%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK LD  RF KLRN 
Sbjct: 1230 IANNPVQHSRTKHIDIRHHFLRDHVVKSDIVISHIRTEDQLADIFTKPLDETRFCKLRNE 1289

Query: 942  LGM 950
            L +
Sbjct: 1290 LNV 1292


>emb|CAH66897.1| OSIGBa0099L20.12 [Oryza sativa Indica Group]
          Length = 711

 Score =  107 bits (267), Expect(2) = 2e-35
 Identities = 74/184 (40%), Positives = 88/184 (47%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTNE----------VDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KPI   + TN           VD+ +YRSM  SLLY T +RP+I+FSV  C R
Sbjct: 457  RFGLEDAKPIKTPMATNGHLDLDEGGKLVDLKLYRSMIGSLLYFTVSRPDIMFSVCMCAR 516

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQA P                                      SD+      RKSTSG C
Sbjct: 517  FQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRKSTSGSC 576

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ +  Y +     ++LCDN
Sbjct: 577  QMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTLLLCDN 636

Query: 749  TSAI 760
             SAI
Sbjct: 637  DSAI 640



 Score = 71.2 bits (173), Expect(2) = 2e-35
 Identities = 37/63 (58%), Positives = 44/63 (69%)
 Frame = +3

Query: 762 IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
           IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK LD  RF KLRN 
Sbjct: 642 IANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDETRFCKLRNE 701

Query: 942 LGM 950
           L +
Sbjct: 702 LNV 704


>emb|CAE04852.2| OSJNBa0084K01.24 [Oryza sativa Japonica Group]
          Length = 543

 Score =  107 bits (267), Expect(2) = 2e-35
 Identities = 74/184 (40%), Positives = 88/184 (47%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350 RESLEHFKPIDGEILTNE----------VDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
           R  LE  KPI   + TN           VD+ +YRSM  SLLY T +RP+I+FSV  C R
Sbjct: 289 RFGLEDAKPIKTPMATNGHLDLDEGGKLVDLKLYRSMIGSLLYFTVSRPDIMFSVCMCAR 348

Query: 500 FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
           FQA P                                      SD+      RKSTSG C
Sbjct: 349 FQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRKSTSGSC 408

Query: 569 CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
             LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ +  Y +     ++LCDN
Sbjct: 409 QMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTLLLCDN 468

Query: 749 TSAI 760
            SAI
Sbjct: 469 DSAI 472



 Score = 71.2 bits (173), Expect(2) = 2e-35
 Identities = 37/63 (58%), Positives = 44/63 (69%)
 Frame = +3

Query: 762 IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
           IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK LD  RF KLRN 
Sbjct: 474 IANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDETRFCKLRNE 533

Query: 942 LGM 950
           L +
Sbjct: 534 LNV 536


>emb|CAE05094.3| OSJNBa0009K15.14 [Oryza sativa Japonica Group]
          Length = 845

 Score =  108 bits (270), Expect(2) = 2e-35
 Identities = 75/184 (40%), Positives = 89/184 (48%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KPI   + TN           VD+ +YRSM  SLLYLT++RP+I+FSV  C R
Sbjct: 591  RFGLEDAKPIKTPMATNGHLDLDGGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCAR 650

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQA P                                      SD+      RKSTSG C
Sbjct: 651  FQAAPKECHLVAVKRILRYLKHSSTIGLWYPKSAKFKLVGYSDSDYASCKVDRKSTSGSC 710

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ +  Y +      +LCDN
Sbjct: 711  QMLGRSLVSWSSKKQNFVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDN 770

Query: 749  TSAI 760
             SAI
Sbjct: 771  DSAI 774



 Score = 69.7 bits (169), Expect(2) = 2e-35
 Identities = 36/63 (57%), Positives = 44/63 (69%)
 Frame = +3

Query: 762 IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
           IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+A+IFTK LD  RF KLRN 
Sbjct: 776 IANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLAEIFTKPLDETRFCKLRNE 835

Query: 942 LGM 950
           L +
Sbjct: 836 LNV 838


>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa Japonica
            Group] gi|108706958|gb|ABF94753.1| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2011

 Score =  102 bits (253), Expect(2) = 5e-35
 Identities = 71/181 (39%), Positives = 87/181 (48%), Gaps = 47/181 (25%)
 Frame = +2

Query: 359  LEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVRFQA 508
            LE  KPI   + TN           VD+ +YRSM  SLLYLT++RP+I+FSV  C RFQA
Sbjct: 1337 LEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQA 1396

Query: 509  NPH-------------------------------------SDWGRDLEGRKSTSGGCCYL 577
             P                                      SD+      RKSTSG C  L
Sbjct: 1397 APKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRKSTSGSCQML 1456

Query: 578  GNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDNTSA 757
            G ++VSW SKKQ  V L  AEA YV AG C  QLL +KQ++  Y +      +LC+N SA
Sbjct: 1457 GRSLVSWSSKKQNFVALFIAEAEYVSAGSCCAQLLWMKQILLDYGISFTKTPLLCENDSA 1516

Query: 758  I 760
            I
Sbjct: 1517 I 1517



 Score = 75.1 bits (183), Expect(2) = 5e-35
 Identities = 38/64 (59%), Positives = 45/64 (70%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK LD  RF KLRN 
Sbjct: 1519 IANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDETRFCKLRNE 1578

Query: 942  LGMC 953
            L +C
Sbjct: 1579 LNLC 1582


>gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1584

 Score =  107 bits (266), Expect(2) = 8e-35
 Identities = 74/184 (40%), Positives = 88/184 (47%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KPI   + TN           VD+ +YRSM  SLLYLT++RP+I+FSV  C R
Sbjct: 1330 RFGLEDAKPIKTPMATNGHLDLDKGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCAR 1389

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQA P                                      SD+      RKSTSG C
Sbjct: 1390 FQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYASCKVDRKSTSGSC 1449

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ +  Y +      +LCDN
Sbjct: 1450 QMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDN 1509

Query: 749  TSAI 760
              AI
Sbjct: 1510 DRAI 1513



 Score = 69.3 bits (168), Expect(2) = 8e-35
 Identities = 36/63 (57%), Positives = 44/63 (69%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK L+  RF KLRN 
Sbjct: 1515 IANNPVQHSRTKHIDIRHHFLRDHVTKCDIVISHIRTEDQLADIFTKPLNETRFCKLRNE 1574

Query: 942  LGM 950
            L +
Sbjct: 1575 LNV 1577


>gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2112

 Score =  107 bits (266), Expect(2) = 1e-34
 Identities = 74/184 (40%), Positives = 88/184 (47%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KPI   + TN           VD+ +YRSM  SLLYLT++RP+I+FSV  C R
Sbjct: 1330 RFGLEDAKPIKTPMATNGHLDLDKGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCAR 1389

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQA P                                      SD+      RKSTSG C
Sbjct: 1390 FQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYASCKVDRKSTSGSC 1449

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ +  Y +      +LCDN
Sbjct: 1450 QMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDN 1509

Query: 749  TSAI 760
              AI
Sbjct: 1510 DRAI 1513



 Score = 68.9 bits (167), Expect(2) = 1e-34
 Identities = 36/61 (59%), Positives = 43/61 (70%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK L+  RF KLRN 
Sbjct: 1515 IANNPVQHSRTKHIDIRHHFLRDHVTKCDIVISHIRTEDQLADIFTKPLNETRFCKLRNE 1574

Query: 942  L 944
            L
Sbjct: 1575 L 1575


>gb|ABF97883.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1441

 Score =  105 bits (262), Expect(2) = 1e-34
 Identities = 73/184 (39%), Positives = 87/184 (47%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTNE----------VDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KP    + TN           VD+ +Y SM  SLLYLT++RP+I+FSVY C R
Sbjct: 1187 RFGLEDAKPTKTPMATNRHLDLDEGGKPVDLKLYCSMIGSLLYLTASRPDIMFSVYMCAR 1246

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQA P                                      SD+      RKSTS  C
Sbjct: 1247 FQATPKECHLVAVKRIPRYLKHSSTIGLWYPKCAKFKLVGYFDSDYAGCKVDRKSTSDSC 1306

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ +  Y +      +LCDN
Sbjct: 1307 QMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDN 1366

Query: 749  TSAI 760
             SAI
Sbjct: 1367 DSAI 1370



 Score = 70.5 bits (171), Expect(2) = 1e-34
 Identities = 36/63 (57%), Positives = 45/63 (71%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+D V+K  I + ++RT +Q+ADIFTK LD  RF KLRN 
Sbjct: 1372 IANNPVQHSRTKHIDIRHHFLRDHVDKCDIVISHIRTENQLADIFTKPLDETRFCKLRNE 1431

Query: 942  LGM 950
            L +
Sbjct: 1432 LNV 1434


>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa Japonica Group]
          Length = 1539

 Score =  103 bits (257), Expect(2) = 2e-34
 Identities = 73/184 (39%), Positives = 87/184 (47%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KPI   + TN           VD+ +YRSM  SLLYLT++RP+I+FSV  C  
Sbjct: 1285 RFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCAW 1344

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQA P                                      SD+      R STSG C
Sbjct: 1345 FQAAPKECHLVAVKRILRYLKYSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRNSTSGSC 1404

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ +  Y +      +LCDN
Sbjct: 1405 QMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDN 1464

Query: 749  TSAI 760
             SAI
Sbjct: 1465 DSAI 1468



 Score = 71.2 bits (173), Expect(2) = 2e-34
 Identities = 37/63 (58%), Positives = 44/63 (69%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK LD  RF KLRN 
Sbjct: 1470 IANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDETRFCKLRNE 1529

Query: 942  LGM 950
            L +
Sbjct: 1530 LNV 1532


>emb|CAH66560.1| OSIGBa0113K06.6 [Oryza sativa Indica Group]
          Length = 1539

 Score =  103 bits (257), Expect(2) = 2e-34
 Identities = 73/184 (39%), Positives = 87/184 (47%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KPI   + TN           VD+ +YRSM  SLLYLT++RP+I+FSV  C  
Sbjct: 1285 RFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCAW 1344

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQA P                                      SD+      R STSG C
Sbjct: 1345 FQAAPKECHLVAVKRILRYLKYSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRNSTSGSC 1404

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ +  Y +      +LCDN
Sbjct: 1405 QMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDN 1464

Query: 749  TSAI 760
             SAI
Sbjct: 1465 DSAI 1468



 Score = 71.2 bits (173), Expect(2) = 2e-34
 Identities = 37/63 (58%), Positives = 44/63 (69%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK LD  RF KLRN 
Sbjct: 1470 IANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDETRFCKLRNE 1529

Query: 942  LGM 950
            L +
Sbjct: 1530 LNV 1532


>gb|AAS98452.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1005

 Score =  106 bits (264), Expect(2) = 9e-34
 Identities = 75/184 (40%), Positives = 89/184 (48%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R SLE  KPI   + TN           VD+ +YRSM  SLLYLT++RP+I+FSV  C R
Sbjct: 751  RFSLEDAKPIKTPMATNGHFDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCAR 810

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQA P                                      SD+      RKSTSG C
Sbjct: 811  FQAAPKECHLVAVKRILRYLKHSCTIGLWYPKGAKFKLVGYSDSDYAGCKVDRKSTSGSC 870

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG    QLL +KQ +  Y +      +LCDN
Sbjct: 871  QMLGRSLVSWSSKKQNSVDLSTAEAEYVSAGSYCAQLLWMKQTLLDYGISFTKTTLLCDN 930

Query: 749  TSAI 760
             SAI
Sbjct: 931  DSAI 934



 Score = 66.6 bits (161), Expect(2) = 9e-34
 Identities = 35/63 (55%), Positives = 42/63 (66%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+  V K  I + ++RT DQ+ADIFTK LD   F KLRN 
Sbjct: 936  IANNPVQHSRTKHIDIRHHFLRHHVAKCDIVISHIRTEDQLADIFTKPLDETHFCKLRNE 995

Query: 942  LGM 950
            L +
Sbjct: 996  LNV 998


>gb|AAK00427.2| Putative copia-type pol polyprotein [Oryza sativa Japonica Group]
            gi|31429784|gb|AAP51786.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1377

 Score =  101 bits (252), Expect(2) = 1e-33
 Identities = 73/184 (39%), Positives = 88/184 (47%), Gaps = 47/184 (25%)
 Frame = +2

Query: 350  RESLEHFKPIDGEILTN----------EVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVR 499
            R  LE  KPI   + TN           VD+ +YRSM  SLLYLT++RP+I+FSV  C R
Sbjct: 1123 RFGLEDAKPIKTHMATNGHLDLDEGGKPVDLKLYRSMIVSLLYLTASRPDIMFSVCMCAR 1182

Query: 500  FQANPH-------------------------------------SDWGRDLEGRKSTSGGC 568
            FQA P                                      SD+      RKSTS   
Sbjct: 1183 FQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRKSTSCSF 1242

Query: 569  CYLGNNIVSWCSKKQKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDN 748
              LG ++VSW SKKQ  V LSTAEA YV AG C  QLL +KQ++  Y +      +LCDN
Sbjct: 1243 QMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQILLDYGISFTKTPLLCDN 1302

Query: 749  TSAI 760
             SAI
Sbjct: 1303 DSAI 1306



 Score = 70.9 bits (172), Expect(2) = 1e-33
 Identities = 37/61 (60%), Positives = 43/61 (70%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID R HFL+D V K  I + ++RT DQ+ADIFTK LD  RF KLRN 
Sbjct: 1308 IANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTKDQLADIFTKPLDETRFCKLRNE 1367

Query: 942  L 944
            L
Sbjct: 1368 L 1368


>gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula]
          Length = 469

 Score =  102 bits (255), Expect(2) = 6e-33
 Identities = 61/139 (43%), Positives = 76/139 (54%), Gaps = 37/139 (26%)
 Frame = +2

Query: 404 VDVVVYRSMKRSLLYLTSTRPNILFSVYPCVRFQANP----------------------- 514
           VD  +YRSM  SLLYLT++RP+I F+V  C R+QA P                       
Sbjct: 268 VDQSLYRSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLAQVKRILKYVNGTTDYGV 327

Query: 515 ---HS-----------DWGRDLEGRKSTSGGCCYLGNNIVSWCSKKQKCVTLSTAEAGYV 652
              HS           DW    + RKSTSGGC +LGNN+VSW SKKQ  V+LSTAEA Y+
Sbjct: 328 LYSHSNNSQLIGYCDADWAGSADDRKSTSGGCFFLGNNLVSWFSKKQNSVSLSTAEAEYI 387

Query: 653 VAGCCATQLL*LKQMIEGY 709
            A    +QL+ +KQM+E Y
Sbjct: 388 AAESSCSQLVWMKQMLEEY 406



 Score = 67.4 bits (163), Expect(2) = 6e-33
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = +3

Query: 792 TKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNSLGMC 953
           TKHID R HF++D+VE K++ ++++ T +Q+ADIFTK LD ++F  LR+ LG+C
Sbjct: 411 TKHIDIRHHFIRDLVEDKVVTLEHVATEEQLADIFTKALDVKQFENLRSKLGVC 464


>gb|EXX76353.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 514

 Score =  104 bits (260), Expect(2) = 1e-32
 Identities = 62/165 (37%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
 Frame = +2

Query: 377 IDGEILTNEVDVVVYRSMKRSLLYLTSTRPNILFSVYPCVRFQANP-------------- 514
           +D ++    VD   YR M  SLLYLT++RP+I+FS   C R+QANP              
Sbjct: 278 LDADLNGKPVDQKKYRGMIGSLLYLTASRPDIMFSTCVCARYQANPMESHAIAVKRIFKY 337

Query: 515 -----------------------HSDWGRDLEGRKSTSGGCCYLGNNIVSWCSKKQKCVT 625
                                   SD+G     RKSTSG C +LG  +VSW SKKQ CV+
Sbjct: 338 LKGTPSLGLWYPANSDFQLNAFTDSDYGGCRLDRKSTSGSCQFLGGRLVSWTSKKQSCVS 397

Query: 626 LSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDNTSAI 760
            STAEA YV A  C +Q++ ++  +  Y  +   I + CD+TSAI
Sbjct: 398 TSTAEAEYVAAASCCSQVMWMQTQLRDYGYKVSQIPIFCDSTSAI 442



 Score = 64.7 bits (156), Expect(2) = 1e-32
 Identities = 31/63 (49%), Positives = 41/63 (65%)
 Frame = +3

Query: 762 IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
           I+ +PV    TKHID R HFL+D ++K  IE+ ++ T DQIAD+FTK LD  +F      
Sbjct: 444 ISHNPVHHSMTKHIDIRYHFLKDNIQKGHIELHFINTEDQIADVFTKALDETKFQYFLGR 503

Query: 942 LGM 950
           LGM
Sbjct: 504 LGM 506


>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
          Length = 1760

 Score =  103 bits (258), Expect(2) = 2e-32
 Identities = 63/156 (40%), Positives = 80/156 (51%), Gaps = 37/156 (23%)
 Frame = +2

Query: 404  VDVVVYRSMKRSLLYLTSTRPNILFSVYPCVRFQANPH---------------------- 517
            VD  VYRSM  SLLYL ++RP+I+ SV  C RFQ++P                       
Sbjct: 1533 VDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGL 1592

Query: 518  ---------------SDWGRDLEGRKSTSGGCCYLGNNIVSWCSKKQKCVTLSTAEAGYV 652
                           +DW      RKSTSG C +LG ++VSW SKKQ  V LSTAEA Y+
Sbjct: 1593 WYPRGSTFDLLGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYI 1652

Query: 653  VAGCCATQLL*LKQMIEGYKLQG*SIIVLCDNTSAI 760
             AG C  QLL ++Q +  Y  +   + +LCDN SAI
Sbjct: 1653 AAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAI 1688



 Score = 64.7 bits (156), Expect(2) = 2e-32
 Identities = 32/63 (50%), Positives = 43/63 (68%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            +A +PV+   TKHI  R HFL+D  +K  IE+ Y+ T DQ+ADIFTK LD + F KLR+ 
Sbjct: 1690 MADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQTFTKLRHE 1749

Query: 942  LGM 950
            L +
Sbjct: 1750 LNI 1752


>emb|CAN71148.1| hypothetical protein VITISV_040337 [Vitis vinifera]
          Length = 432

 Score = 99.8 bits (247), Expect(2) = 2e-32
 Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 37/156 (23%)
 Frame = +2

Query: 404 VDVVVYRSMKRSLLYLTSTRPNILFSVYPCVRFQANP----------------------- 514
           V   +YRSM  SLLYL +++PN+ FSV  C R+QA P                       
Sbjct: 209 VXETLYRSMIGSLLYLNASKPNVAFSVGVCARYQACPKESHLIALKRIIRYILGTLKLGL 268

Query: 515 ------HS--------DWGRDLEGRKSTSGGCCYLGNNIVSWCSKKQKCVTLSTAEAGYV 652
                 HS        +W  +++ RK+T G C Y+GN +VSW SKKQ  +  S  EA Y+
Sbjct: 269 WYPFDTHSNVACYTDABWAGNVDDRKNTLGCCFYIGNCLVSWMSKKQNSILRSXTEAXYI 328

Query: 653 VAGCCATQLL*LKQMIEGYKLQG*SIIVLCDNTSAI 760
           V G C +QLL +K+  + Y +   +++V CDNTS I
Sbjct: 329 VIGSCCSQLLWIKKXFKDYGIDQETMVVFCDNTSTI 364



 Score = 68.9 bits (167), Expect(2) = 2e-32
 Identities = 30/66 (45%), Positives = 47/66 (71%)
 Frame = +3

Query: 762 IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
           I+K+P+ +  TKHID + HF++D+VE K++ ++Y+ T  QIADI TK LD  R   LR S
Sbjct: 366 ISKNPILYSRTKHIDIKHHFIRDLVEDKVVSLEYVPTKGQIADILTKPLDVSRLESLRRS 425

Query: 942 LGMCSI 959
           +G+ ++
Sbjct: 426 IGLSTL 431


>emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa Japonica Group]
          Length = 1549

 Score =  108 bits (269), Expect(2) = 2e-32
 Identities = 71/170 (41%), Positives = 86/170 (50%), Gaps = 41/170 (24%)
 Frame = +2

Query: 374  PIDGEILTNE----VDVVVYRSMKRSLLYLTSTRPNILFSVYPCVRFQANPH-------- 517
            P +G +  NE    VD  VYRS+  SLLYL ++RPNI+ SV  C RFQA P         
Sbjct: 1309 PSNGHLDLNEQGKGVDQKVYRSIIGSLLYLCASRPNIMLSVCMCARFQAAPKECHLVAVK 1368

Query: 518  -----------------------------SDWGRDLEGRKSTSGGCCYLGNNIVSWCSKK 610
                                         +D+ R    RKSTSG C +LG ++VSW SKK
Sbjct: 1369 RILRYLVHTPNLGLWYPKGARFDLNGYADADYARCKVDRKSTSGTCQFLGRSLVSWSSKK 1428

Query: 611  QKCVTLSTAEAGYVVAGCCATQLL*LKQMIEGYKLQG*SIIVLCDNTSAI 760
            Q  V LSTAEA Y+ AG C  QLL +KQ +  Y L    I +LCDN SAI
Sbjct: 1429 QNFVALSTAEAEYISAGSCCAQLLWMKQTLRDYGLNVSKIPLLCDNESAI 1478



 Score = 60.1 bits (144), Expect(2) = 2e-32
 Identities = 31/63 (49%), Positives = 43/63 (68%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            IA +PVQ   TKHID   HFL+D   +  I+++++RT  Q+ADIFTK LD  RF +LR+ 
Sbjct: 1480 IANNPVQHSRTKHIDICHHFLRDHSTRGDIDIQHVRTDKQLADIFTKPLDEARFCELRSE 1539

Query: 942  LGM 950
            L +
Sbjct: 1540 LNI 1542


>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
          Length = 1892

 Score =  103 bits (258), Expect(2) = 4e-32
 Identities = 63/156 (40%), Positives = 80/156 (51%), Gaps = 37/156 (23%)
 Frame = +2

Query: 404  VDVVVYRSMKRSLLYLTSTRPNILFSVYPCVRFQANPH---------------------- 517
            VD  VYRSM  SLLYL ++RP+I+ SV  C RFQ++P                       
Sbjct: 1665 VDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGL 1724

Query: 518  ---------------SDWGRDLEGRKSTSGGCCYLGNNIVSWCSKKQKCVTLSTAEAGYV 652
                           +DW      RKSTSG C +LG ++VSW SKKQ  V LSTAEA Y+
Sbjct: 1725 WYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYI 1784

Query: 653  VAGCCATQLL*LKQMIEGYKLQG*SIIVLCDNTSAI 760
             AG C  QLL ++Q +  Y  +   + +LCDN SAI
Sbjct: 1785 AAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAI 1820



 Score = 63.5 bits (153), Expect(2) = 4e-32
 Identities = 31/63 (49%), Positives = 43/63 (68%)
 Frame = +3

Query: 762  IAKHPVQFGCTKHIDTRCHFLQDMVEKKIIEVKYLRTADQIADIFTKLLDFERFYKLRNS 941
            +A +PV+   TKHI  R HFL+D  +K  IE+ Y+ T DQ+ADIFTK LD + F +LR+ 
Sbjct: 1822 MADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHE 1881

Query: 942  LGM 950
            L +
Sbjct: 1882 LNI 1884