BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00006938
         (365 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   189   4e-46
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   162   5e-38
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   152   4e-35
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   152   4e-35
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   152   6e-35
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   151   1e-34
gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis]     144   1e-32
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   144   2e-32
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   139   5e-31
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   138   7e-31
ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phas...   137   1e-30
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   135   5e-30
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-...   135   5e-30
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   135   6e-30
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   135   6e-30
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ...   134   1e-29
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   133   2e-29
gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]               133   2e-29
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps...   132   4e-29
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   132   5e-29

>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  189 bits (479), Expect = 4e-46
 Identities = 93/122 (76%), Positives = 109/122 (89%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGDF-NTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LSVAK++SASKCLRVVGSIDQKIG++  TKYMEI+ DTS  +PEE V RQHM+ DV TLL
Sbjct: 353 LSVAKVMSASKCLRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLL 412

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
           +GL+ RE++VIILRFGLGNCQCKSLEEIG+ F VSKEWIR+IER+AL K+RNE+SLKILN
Sbjct: 413 NGLEPREKQVIILRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILN 472

Query: 360 HY 365
           HY
Sbjct: 473 HY 474


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  162 bits (410), Expect = 5e-38
 Identities = 79/122 (64%), Positives = 101/122 (82%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS+AKI SAS+CLRVVGSIDQKIG+  N KY+E +PDTS  +PEEVV RQHM++D++ LL
Sbjct: 436 LSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLL 495

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
             LDSRER+V+ILRFGL + Q KSLEEIG+ F VSKEW+RR+E+  +T++RNEE+ + L 
Sbjct: 496 RSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNLR 555

Query: 360 HY 365
           HY
Sbjct: 556 HY 557


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  152 bits (385), Expect = 4e-35
 Identities = 73/122 (59%), Positives = 100/122 (81%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS+A+I SAS+CLR+VGSIDQKIGD  N KY+E  PD S  +P+E+V RQHM KDV+ +L
Sbjct: 410 LSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL 469

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
           + LDSRER+V++LR+GL + + KSLEEIGK F VSKEWIR++E+ A+TK+R+ E+ + L+
Sbjct: 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLS 529

Query: 360 HY 365
           H+
Sbjct: 530 HF 531


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553989|gb|ESR64003.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  152 bits (385), Expect = 4e-35
 Identities = 73/122 (59%), Positives = 100/122 (81%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS+A+I SAS+CLR+VGSIDQKIGD  N KY+E  PD S  +P+E+V RQHM KDV+ +L
Sbjct: 410 LSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL 469

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
           + LDSRER+V++LR+GL + + KSLEEIGK F VSKEWIR++E+ A+TK+R+ E+ + L+
Sbjct: 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLS 529

Query: 360 HY 365
           H+
Sbjct: 530 HF 531


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  152 bits (383), Expect = 6e-35
 Identities = 75/122 (61%), Positives = 98/122 (80%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3    LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
            LS+AKI SA+KC+RVVGSIDQKIGD  N KY+E IPD S  +PE+ V RQHM +D++ LL
Sbjct: 724  LSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSPEKTVMRQHMKEDIHDLL 783

Query: 180  DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
            +GLD+RER+V++LR+GL     KSLEEIG+ F VSKEWIRRIE  A+ K+R++E+ + L+
Sbjct: 784  NGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLRDKETCRNLS 843

Query: 360  HY 365
            HY
Sbjct: 844  HY 845


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
           subsp. vesca]
          Length = 545

 Score =  151 bits (381), Expect = 1e-34
 Identities = 76/122 (62%), Positives = 95/122 (77%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS+AKI SAS+CLRVVGS+D KI + +   YME  PD +  TPEE V RQHM  D++ LL
Sbjct: 420 LSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQHMKNDIHVLL 479

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
           +GL+SRE++V+ LR+GL  C  KSLEEIG+ F VSKEWIR+IE+ ALTK+RNEES K L+
Sbjct: 480 EGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRNEESNKNLS 539

Query: 360 HY 365
           HY
Sbjct: 540 HY 541


>gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 476

 Score =  144 bits (363), Expect = 1e-32
 Identities = 76/122 (62%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS+ KI SA  CLRVVGSID KIGD F+ K ME + D S  TPEE V RQHM  D++ LL
Sbjct: 353 LSLDKIRSAGNCLRVVGSIDHKIGDCFSGKNMEFMADMSIKTPEETVMRQHMKSDIHNLL 412

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
           + LD RER+V++LR+GL NCQ KSLEEIGK F VSKEWIR+IE+ ALTK+R+E + +  +
Sbjct: 413 ETLDPRERQVLVLRYGLINCQPKSLEEIGKLFKVSKEWIRKIEKKALTKLRDETN-EDFS 471

Query: 360 HY 365
           HY
Sbjct: 472 HY 473


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
           gi|462419859|gb|EMJ24122.1| hypothetical protein
           PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  144 bits (362), Expect = 2e-32
 Identities = 74/122 (60%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS+A+I SAS CLRVVGS+D K+ + +   YME  PDTS  +PEE V RQHM KD++ LL
Sbjct: 431 LSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQHMKKDIHDLL 490

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
            GL+ RER+V++LR+GL N   KSLEEIG+ F VSKEWIR+IE+ AL K+R EES K L+
Sbjct: 491 KGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLRVEESHKYLS 550

Query: 360 HY 365
           HY
Sbjct: 551 HY 552


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           tuberosum]
          Length = 555

 Score =  139 bits (349), Expect = 5e-31
 Identities = 70/122 (57%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS A+I  ASKCLRVVGSIDQK+GD  + K +E+ PD S  +PEE V RQ ++ ++Y+LL
Sbjct: 432 LSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPEETVMRQDIVDNMYSLL 491

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
           + LD +E++VI  RFGL   Q KSLEEIG+ + VSKEWIRRIER ALTK+RN +  + + 
Sbjct: 492 ESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRNADYFQHIT 551

Query: 360 HY 365
           HY
Sbjct: 552 HY 553


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           lycopersicum]
          Length = 551

 Score =  138 bits (348), Expect = 7e-31
 Identities = 70/122 (57%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS A+I  ASKCLRVVGSIDQK+GD  N K +E+ PD S  +PEE V RQ ++ ++Y LL
Sbjct: 428 LSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEEFVMRQDIVDNMYALL 487

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
           + LD +E++VI  RFGL   Q KSLEEIG+ + VSKEWIRRIER ALTK+R+ +  + + 
Sbjct: 488 ESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADYFQHIT 547

Query: 360 HY 365
           HY
Sbjct: 548 HY 549


>ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris]
           gi|561034783|gb|ESW33313.1| hypothetical protein
           PHAVU_001G059800g [Phaseolus vulgaris]
          Length = 538

 Score =  137 bits (346), Expect = 1e-30
 Identities = 69/121 (57%), Positives = 94/121 (77%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGDFNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLLD 182
           LS+ KI SAS CLR+V SIDQK+G+F+ +Y E++PDT+  +PE  V +QHM KDV+ LL 
Sbjct: 415 LSLDKIKSASNCLRIVASIDQKVGNFSIEYNELLPDTTIESPENGVLKQHMKKDVHDLLK 474

Query: 183 GLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNH 362
           GL+SRER+++ LRFGL + Q KSL++IG  F VSKE IR+IE+ ALTK+RNE +   L++
Sbjct: 475 GLNSRERQILSLRFGLIDNQPKSLQDIGTLFKVSKERIRKIEKIALTKLRNEATTSDLHY 534

Query: 363 Y 365
           Y
Sbjct: 535 Y 535


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  135 bits (341), Expect = 5e-30
 Identities = 65/121 (53%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
 Frame = +3

Query: 6   SVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLLD 182
           SV KI +A++CL+VVGSID+K+GD F TK++E  PDT+  +PEE V RQ   +D++ LL+
Sbjct: 448 SVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLE 507

Query: 183 GLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNH 362
           GL+ RE++V++LR+GL + + KSLEEIGK F VSKEWIR+IER A+ K+R++ + + L +
Sbjct: 508 GLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRY 567

Query: 363 Y 365
           Y
Sbjct: 568 Y 568


>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
          Length = 545

 Score =  135 bits (341), Expect = 5e-30
 Identities = 66/121 (54%), Positives = 91/121 (75%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGDFNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLLD 182
           LS+ +I SAS C+R+V S++QK+GD   +YM  + D S  +PEE V +QH+ KD++ +L 
Sbjct: 422 LSLDRIRSASHCMRIVSSMNQKMGDRGIEYMGYMADMSIESPEETVMKQHIRKDIHDILQ 481

Query: 183 GLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNH 362
            LDSRER+++ILRFGL + Q KSLE IGK + VSKEWIR+IE+ ALTK+RNE +   LN+
Sbjct: 482 SLDSRERQILILRFGLNDHQPKSLEYIGKIYKVSKEWIRKIEKKALTKLRNEANTSKLNY 541

Query: 363 Y 365
           Y
Sbjct: 542 Y 542


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
           gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
           polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  135 bits (340), Expect = 6e-30
 Identities = 67/122 (54%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           L +AK+  AS CL+VVGS DQK+GD  N KYME   D S  +PEE V R+ M KD++ +L
Sbjct: 436 LPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNIL 495

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
             L+SRER+V++LR+GL + + KSLEEIGK   +SKEW+R+IE+ A+TK++NEE++K L+
Sbjct: 496 QRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLS 555

Query: 360 HY 365
           HY
Sbjct: 556 HY 557


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323785|gb|EFH54206.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  135 bits (340), Expect = 6e-30
 Identities = 65/122 (53%), Positives = 96/122 (78%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LSV KI +A++CL+VVGSI++K+GD F+TK++E  PDT+  +PEE V RQ   +D++ LL
Sbjct: 444 LSVKKIRAANQCLKVVGSIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLL 503

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
           +GL+ RE++V++LR+GL N + KSLEEIGK   VSKEWIR+IER A+ K+R++ + + L 
Sbjct: 504 EGLEPREKQVMVLRYGLQNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLR 563

Query: 360 HY 365
           +Y
Sbjct: 564 YY 565


>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine
           max]
          Length = 551

 Score =  134 bits (338), Expect = 1e-29
 Identities = 66/122 (54%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGDF-NTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS+ KI SAS CLR+V SIDQK+GD+   +YME++PD +  +PE+ V +QHM KDV+ LL
Sbjct: 427 LSLDKIKSASNCLRIVASIDQKVGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHDLL 486

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
            GL+ RER+++ LRFGL + Q +SL++IG  F VSKE IR+IE+ ALTK++NE ++  L+
Sbjct: 487 KGLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISKLH 546

Query: 360 HY 365
           +Y
Sbjct: 547 YY 548


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
           gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
           polymerase sigma factor sigC; Short=Sigma factor C;
           Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
           sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
           Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
           [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
           [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
           factor SigC [Arabidopsis thaliana]
           gi|7630012|emb|CAB88354.1| sigma factor SigC
           [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
           At3g53920 [Arabidopsis thaliana]
           gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
           C [Arabidopsis thaliana]
          Length = 571

 Score =  133 bits (335), Expect = 2e-29
 Identities = 64/121 (52%), Positives = 94/121 (77%), Gaps = 1/121 (0%)
 Frame = +3

Query: 6   SVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLLD 182
           SV KI +A++CL+VVGSID+K+GD F TK++E  PDT+  +PEE V RQ   +D++ LL+
Sbjct: 448 SVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLE 507

Query: 183 GLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNH 362
           GL+ RE++V++LR+GL + + KSLEEIGK   VSKEWIR+IER A+ K+R++ + + L +
Sbjct: 508 GLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRY 567

Query: 363 Y 365
           Y
Sbjct: 568 Y 568


>gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
          Length = 291

 Score =  133 bits (335), Expect = 2e-29
 Identities = 64/121 (52%), Positives = 94/121 (77%), Gaps = 1/121 (0%)
 Frame = +3

Query: 6   SVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLLD 182
           SV KI +A++CL+VVGSID+K+GD F TK++E  PDT+  +PEE V RQ   +D++ LL+
Sbjct: 168 SVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLE 227

Query: 183 GLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNH 362
           GL+ RE++V++LR+GL + + KSLEEIGK   VSKEWIR+IER A+ K+R++ + + L +
Sbjct: 228 GLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRY 287

Query: 363 Y 365
           Y
Sbjct: 288 Y 288


>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
           gi|482559522|gb|EOA23713.1| hypothetical protein
           CARUB_v10016920mg [Capsella rubella]
          Length = 581

 Score =  132 bits (333), Expect = 4e-29
 Identities = 65/122 (53%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LSV KI +A++CL+VVGSI+ K+GD F+TK++E  PDT   +PEE V RQ   +D++ LL
Sbjct: 457 LSVKKIRAANQCLKVVGSIENKVGDCFSTKFLEFTPDTMMESPEEAVMRQSARRDLHDLL 516

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
           +GL+ RE++V++LR+GL + + KSLEEIGK   VSKEWIRRIER A+ K+R++ + + L 
Sbjct: 517 EGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWIRRIERRAMAKLRDQPNAEDLR 576

Query: 360 HY 365
           +Y
Sbjct: 577 YY 578


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  132 bits (332), Expect = 5e-29
 Identities = 67/122 (54%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 179
           LS+AKI SA  CLRVVGS DQ   D +    +E  PDTS  +PEE   +Q   KD++ LL
Sbjct: 437 LSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLL 496

Query: 180 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 359
            GLD RER++++LR+G G  Q KSLEEIG+RF+VSKEWIR++E+TAL  +R+EE  + L 
Sbjct: 497 KGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLR 556

Query: 360 HY 365
           HY
Sbjct: 557 HY 558