BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00002094
         (4205 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su...  1457   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  1457   0.0  
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr...  1456   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  1454   0.0  
gb|EYU43393.1| hypothetical protein MIMGU_mgv1a000385mg [Mimulus...  1454   0.0  
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i...  1453   0.0  
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...  1453   0.0  
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su...  1449   0.0  
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su...  1448   0.0  
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su...  1446   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...  1446   0.0  
ref|XP_007148168.1| hypothetical protein PHAVU_006G185800g [Phas...  1446   0.0  
ref|XP_007138707.1| hypothetical protein PHAVU_009G230400g [Phas...  1445   0.0  
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...  1444   0.0  
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not...  1444   0.0  
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...  1444   0.0  
ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II su...  1442   0.0  
gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotia...  1441   0.0  
ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Popu...  1440   0.0  
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia...  1439   0.0  

>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
            sinensis]
          Length = 1195

 Score = 1457 bits (3773), Expect = 0.0
 Identities = 713/766 (93%), Positives = 734/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+P+MLV T 
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI+ALQQRES
Sbjct: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PEDGGWHDLV+KGF                  +DLVQAR  P+EAY+DTYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ D+AQGQA+
Sbjct: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL +MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 1133

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179



 Score =  768 bits (1982), Expect = 0.0
 Identities = 381/392 (97%), Positives = 388/392 (98%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG Q D
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+FQDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVT++KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 1457 bits (3771), Expect = 0.0
 Identities = 715/766 (93%), Positives = 731/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+PDMLV T 
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTL 593

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES
Sbjct: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRES 653

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
             E+GGWHDLV+KGF                  HDLVQAR  P+EAYSDTYTHCEIHPSLI
Sbjct: 654  SEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLI 713

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PIA ++AQGQ+A
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSA 893

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL +MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179



 Score =  775 bits (2002), Expect = 0.0
 Identities = 386/392 (98%), Positives = 389/392 (99%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 322

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414


>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
            gi|557525528|gb|ESR36834.1| hypothetical protein
            CICLE_v10027701mg [Citrus clementina]
          Length = 1195

 Score = 1456 bits (3770), Expect = 0.0
 Identities = 712/766 (92%), Positives = 734/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+P+MLV T 
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI+ALQQRES
Sbjct: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PEDGGWHDLV+KGF                  +DLVQAR  P+EAY+DTYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ D+AQGQA+
Sbjct: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL +MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179



 Score =  768 bits (1982), Expect = 0.0
 Identities = 381/392 (97%), Positives = 388/392 (98%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG Q D
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+FQDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVT++KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 1454 bits (3765), Expect = 0.0
 Identities = 713/766 (93%), Positives = 730/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+PDMLV T 
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTL 590

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK+KDI ALQQRE+
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRET 650

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PEDGGWHDLV+KGF                  +DLV AR  P+EAYS+TYTHCEIHPSLI
Sbjct: 651  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLI 710

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT+AYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRA 770

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV+IGKT+PIA D+AQG AA
Sbjct: 831  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAA 890

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT+RDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL SMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIA 1130

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRM+
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRML 1176



 Score =  775 bits (2001), Expect = 0.0
 Identities = 386/392 (98%), Positives = 389/392 (99%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 80   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 199

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 259

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQ 319

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 411


>gb|EYU43393.1| hypothetical protein MIMGU_mgv1a000385mg [Mimulus guttatus]
          Length = 1197

 Score = 1454 bits (3764), Expect = 0.0
 Identities = 717/767 (93%), Positives = 728/767 (94%), Gaps = 1/767 (0%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 416  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 475

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 476  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 535

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVST 
Sbjct: 536  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTL 595

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES
Sbjct: 596  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRES 655

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            P+DGGWHDLV+KGF                  +DLV AR  P EAYSDTYTHCEIHPSLI
Sbjct: 656  PDDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARINPGEAYSDTYTHCEIHPSLI 715

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 716  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 775

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 776  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 835

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQA- 2904
            LVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI  D+AQGQA 
Sbjct: 836  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITPDEAQGQAN 895

Query: 2905 ARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 3084
            ARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT
Sbjct: 896  ARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 955

Query: 3085 VGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 3264
            VGMTYTQEDMPWTLEGI PDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTD
Sbjct: 956  VGMTYTQEDMPWTLEGINPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTD 1015

Query: 3265 VTVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRG 3444
            VTVDNISKALHKCGYQMRGYETMYNGHTGR+L SMIFLGPTYYQRLKHMVDDKIHSRGRG
Sbjct: 1016 VTVDNISKALHKCGYQMRGYETMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRG 1075

Query: 3445 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLI 3624
            PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCE CGLI
Sbjct: 1076 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEKCGLI 1135

Query: 3625 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            AIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQELM+MAIAPRM+
Sbjct: 1136 AIANLKKNSFECRACKNKTDIVQVHIPYACKLLFQELMSMAIAPRML 1182



 Score =  780 bits (2013), Expect = 0.0
 Identities = 394/427 (92%), Positives = 402/427 (94%), Gaps = 1/427 (0%)
 Frame = +3

Query: 105  MYMDDE-YEQGDTGEEQXXXXXXXXXXXXXXXXXXITQEDAWAVISAYFEEKGLVRQQLD 281
            M MD+E YEQG   EE                   ITQEDAWAVISAYFEEKGLVRQQLD
Sbjct: 1    MDMDEEFYEQGYPDEE-----------FEEEDEEEITQEDAWAVISAYFEEKGLVRQQLD 49

Query: 282  SFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFVETIYKISFGQIYLSKPMMTESDG 461
            SFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDF ETIYKISFGQIYLSKPMMTESDG
Sbjct: 50   SFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDG 109

Query: 462  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 641
            ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS
Sbjct: 110  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 169

Query: 642  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 821
            YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 170  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 229

Query: 822  AEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 1001
            AEVRSMAETQNRPPSTMF+RML+RTSAKGGSSGQYIRATLPYIR+EIPIIIVFRALGFVA
Sbjct: 230  AEVRSMAETQNRPPSTMFIRMLARTSAKGGSSGQYIRATLPYIRSEIPIIIVFRALGFVA 289

Query: 1002 DKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAK 1181
            DKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT+++RIKYAK
Sbjct: 290  DKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDRRIKYAK 349

Query: 1182 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 1361
            EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL
Sbjct: 350  EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 409

Query: 1362 GGLFRMV 1382
            GGLFRM+
Sbjct: 410  GGLFRML 416


>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
            polymerase family protein isoform 1 [Theobroma cacao]
          Length = 1189

 Score = 1453 bits (3762), Expect = 0.0
 Identities = 711/766 (92%), Positives = 734/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG+HRNPDMLV+T 
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTL 590

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRES 650

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PEDGGWHDLV+KGF                  +DLVQAR  P+EAYS+TYTHCEIHPSLI
Sbjct: 651  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLI 710

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 770

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ ++AQGQA+
Sbjct: 831  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAS 890

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RY++RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNIS+ALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISRALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1130

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM+
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRML 1176



 Score =  771 bits (1992), Expect = 0.0
 Identities = 383/392 (97%), Positives = 389/392 (99%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 80   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 199

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 259

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 319

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVG++CETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDFCETKKAYYFGYIIHRLLLC 379

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 411


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score = 1453 bits (3762), Expect = 0.0
 Identities = 713/766 (93%), Positives = 731/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVRSYVQKCVDNGKDVNLQF IKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 420  LFRKLTRDVRSYVQKCVDNGKDVNLQFXIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 479

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRL+SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 480  QVLNRLTYASTLSHLRRLBSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 539

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRNPDMLVST 
Sbjct: 540  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGLWVGIHRNPDMLVSTL 599

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD+ ALQQRES
Sbjct: 600  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDVQALQQRES 659

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            P+DGGWH+LV+KGF                  +DL+ A+  P EAYSDTYTHCEIHPSLI
Sbjct: 660  PDDGGWHELVAKGFIEYIDTEEEETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLI 719

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 720  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 779

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 780  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 839

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTR SGEDVIIGKT+PI+ DDAQGQAA
Sbjct: 840  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQGQAA 899

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 900  RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 959

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 960  GMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1019

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL+SMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1020 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGP 1079

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCE CGLIA
Sbjct: 1080 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIA 1139

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRM+
Sbjct: 1140 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRML 1185



 Score =  765 bits (1975), Expect = 0.0
 Identities = 381/392 (97%), Positives = 386/392 (98%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            I+QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QPD
Sbjct: 29   ISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQPD 88

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHD
Sbjct: 89   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 148

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVL
Sbjct: 149  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 208

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE QNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 209  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSRTSAKGGSSGQY 268

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHIC+N  DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 269  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEAFVIQNQQ 328

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRG+TVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 329  VALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 388

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 389  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 420


>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score = 1449 bits (3752), Expect = 0.0
 Identities = 710/766 (92%), Positives = 731/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW+GIHR+PDMLV T 
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 593

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKKKDI ALQQRES
Sbjct: 594  KKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRES 653

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PEDGGWHDLVSKGF                  +DLVQAR  P++AYSDTYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLI 713

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIV+IACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ ++AQGQA 
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM+
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRML 1179



 Score =  767 bits (1981), Expect = 0.0
 Identities = 382/392 (97%), Positives = 387/392 (98%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 142

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTE QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 143  GEEVTEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+KGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 262

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F  TQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQ 322

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414


>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
            arietinum]
          Length = 1194

 Score = 1448 bits (3749), Expect = 0.0
 Identities = 709/766 (92%), Positives = 732/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW+GIHR+PDMLV T 
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 593

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKKKDI +LQQRES
Sbjct: 594  RKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRES 653

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PE+GGWHDLVSKGF                  +DLVQAR  P+EAYSDTYTHCEIHPSLI
Sbjct: 654  PEEGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLI 713

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+P++ ++AQGQAA
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAA 893

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RY+KRDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 1133

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM+
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRML 1179



 Score =  768 bits (1982), Expect = 0.0
 Identities = 380/392 (96%), Positives = 389/392 (99%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGET+TLFPKAARLRNLTYSAPLYVDV+KRVIKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETSTLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 142

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+KGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 262

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 322

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVTKEKRIKYAK+ILQ+EMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKDILQREMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414


>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score = 1446 bits (3744), Expect = 0.0
 Identities = 710/765 (92%), Positives = 729/765 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 419  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 478

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 479  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 538

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+P+MLV T 
Sbjct: 539  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 598

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES
Sbjct: 599  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRES 658

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PEDGGWHDLV+KGF                   DL+QAR  P EAYSDTYTHCEIHPSLI
Sbjct: 659  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLI 718

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 719  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 778

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 779  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 838

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ ++AQGQAA
Sbjct: 839  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAA 898

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RY++RDHS SLRHSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 899  RYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 958

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 959  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1018

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1019 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1078

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCE CGLIA
Sbjct: 1079 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIA 1138

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 3762
            IANLKK+SFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM
Sbjct: 1139 IANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRM 1183



 Score =  765 bits (1975), Expect = 0.0
 Identities = 380/392 (96%), Positives = 387/392 (98%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 28   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 87

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
              ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHD
Sbjct: 88   VAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 147

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 148  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 207

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 208  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 267

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIR EIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 268  IRATLPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 327

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRG+TVGVTKEKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLC
Sbjct: 328  VALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLC 387

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 388  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 419


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 1446 bits (3743), Expect = 0.0
 Identities = 708/766 (92%), Positives = 730/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T 
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTL 590

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKKKDI  LQQRES
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRES 650

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            P++GGWHDLV+KG+                  +DLVQAR  P +AYSDTYTHCEIHPSLI
Sbjct: 651  PDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLI 710

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 770

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ DDAQGQA+
Sbjct: 831  LVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 890

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT++DHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1130

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1176



 Score =  770 bits (1987), Expect = 0.0
 Identities = 391/429 (91%), Positives = 399/429 (93%), Gaps = 3/429 (0%)
 Frame = +3

Query: 105  MYMDDEYEQG---DTGEEQXXXXXXXXXXXXXXXXXXITQEDAWAVISAYFEEKGLVRQQ 275
            M M+DEYE     D  EE+                  ITQEDAWAVISAYFEEKGLVRQQ
Sbjct: 1    MDMEDEYEPQYNVDDDEEE------------------ITQEDAWAVISAYFEEKGLVRQQ 42

Query: 276  LDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFVETIYKISFGQIYLSKPMMTES 455
            LDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DF ETIYKI+FGQIYLSKPMMTES
Sbjct: 43   LDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTES 102

Query: 456  DGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLR 635
            DGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLR
Sbjct: 103  DGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLR 162

Query: 636  SSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 815
            SSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA
Sbjct: 163  SSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 222

Query: 816  YVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGF 995
            +VAEVRSMA+TQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGF
Sbjct: 223  FVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGF 282

Query: 996  VADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKY 1175
            VADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT+EKRIKY
Sbjct: 283  VADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKY 342

Query: 1176 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 1355
            AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP
Sbjct: 343  AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 402

Query: 1356 LLGGLFRMV 1382
            LLGGLFRM+
Sbjct: 403  LLGGLFRML 411


>ref|XP_007148168.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
            gi|561021391|gb|ESW20162.1| hypothetical protein
            PHAVU_006G185800g [Phaseolus vulgaris]
          Length = 1194

 Score = 1446 bits (3742), Expect = 0.0
 Identities = 709/766 (92%), Positives = 731/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG W+GIHR+PDMLV T 
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGSWMGIHRDPDMLVRTL 593

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKK+DI ALQQRES
Sbjct: 594  RKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIHALQQRES 653

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PE+GGWHDLVSKGF                  +DLVQAR  P++AYSDTYTHCEIHPSLI
Sbjct: 654  PEEGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEDAYSDTYTHCEIHPSLI 713

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ ++AQGQA 
Sbjct: 834  LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM+
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRML 1179



 Score =  771 bits (1992), Expect = 0.0
 Identities = 383/392 (97%), Positives = 389/392 (99%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIY+ISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHD
Sbjct: 83   FAETIYRISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 142

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+KGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 262

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 322

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414


>ref|XP_007138707.1| hypothetical protein PHAVU_009G230400g [Phaseolus vulgaris]
            gi|561011794|gb|ESW10701.1| hypothetical protein
            PHAVU_009G230400g [Phaseolus vulgaris]
          Length = 1196

 Score = 1445 bits (3740), Expect = 0.0
 Identities = 707/766 (92%), Positives = 731/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKT+TSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 472  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW+GIHR+PDMLV T 
Sbjct: 532  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 591

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV++QRLLIKKKDI ALQQRES
Sbjct: 592  RKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDRQRLLIKKKDIHALQQRES 651

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PE+GGWHDLVSKGF                  +DLVQAR  P+EAYSDTYTHCEIHPSLI
Sbjct: 652  PEEGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEEAYSDTYTHCEIHPSLI 711

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 712  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 831

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ ++AQGQA 
Sbjct: 832  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 891

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 892  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 951

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 952  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1011

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVD+ISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1012 TVDSISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1071

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1072 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLIA 1131

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQV IPYACKLLFQELMAMAIAPRM+
Sbjct: 1132 IANLKKNSFECRGCKNKTDIVQVFIPYACKLLFQELMAMAIAPRML 1177



 Score =  766 bits (1979), Expect = 0.0
 Identities = 384/426 (90%), Positives = 399/426 (93%)
 Frame = +3

Query: 105  MYMDDEYEQGDTGEEQXXXXXXXXXXXXXXXXXXITQEDAWAVISAYFEEKGLVRQQLDS 284
            M ++DEYE+    +E+                  ITQEDAWAVISAYFEEKGLVRQQLDS
Sbjct: 1    MELEDEYEEQMMEDEEEEDE--------------ITQEDAWAVISAYFEEKGLVRQQLDS 46

Query: 285  FDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFVETIYKISFGQIYLSKPMMTESDGE 464
            FDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D  ET+YKISFGQIYLSKPMMTESDGE
Sbjct: 47   FDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDSAETVYKISFGQIYLSKPMMTESDGE 106

Query: 465  TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 644
            TA+LFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY
Sbjct: 107  TASLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 166

Query: 645  CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 824
            CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA
Sbjct: 167  CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 226

Query: 825  EVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVAD 1004
            EVRSMAE+QNRPPSTMFVRMLSRTS+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVAD
Sbjct: 227  EVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVAD 286

Query: 1005 KDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKE 1184
            KDILEHICY+F DTQMM+LLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTKEKRIKYAKE
Sbjct: 287  KDILEHICYDFSDTQMMDLLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKE 346

Query: 1185 ILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 1364
            ILQKEMLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG
Sbjct: 347  ILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 406

Query: 1365 GLFRMV 1382
            GLFRM+
Sbjct: 407  GLFRML 412


>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
            tuberosum]
          Length = 1191

 Score = 1444 bits (3738), Expect = 0.0
 Identities = 707/766 (92%), Positives = 729/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T 
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTL 590

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKKKDI  LQQRES
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRES 650

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            P++GGWHDLV+KG+                  +DLVQAR  P +AYSDTYTHCEIHPSLI
Sbjct: 651  PDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLI 710

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 770

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ DDAQGQA+
Sbjct: 831  LVKEDFGRPDRATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 890

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT++DHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1130

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1176



 Score =  768 bits (1984), Expect = 0.0
 Identities = 382/392 (97%), Positives = 388/392 (98%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 80   FAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 199

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 259

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQ 319

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 411


>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 1193

 Score = 1444 bits (3737), Expect = 0.0
 Identities = 709/767 (92%), Positives = 729/767 (95%), Gaps = 1/767 (0%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 472  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+PDMLV T 
Sbjct: 532  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTL 591

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRE+
Sbjct: 592  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIRALQQRET 651

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PE+ GWHDLVS GF                  +DLVQAR  P+EAYS+TYTHCEIHPSLI
Sbjct: 652  PEEAGWHDLVSNGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLI 711

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 712  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS++DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 831

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PIA D+AQGQAA
Sbjct: 832  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAA 891

Query: 2908 -RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 3084
             RYT+RDHS SLRHSE G+VDQVLLTTNADGLRFVKVRVRS+RIPQIGDKFSSRHGQKGT
Sbjct: 892  SRYTRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGT 951

Query: 3085 VGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 3264
            VGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD
Sbjct: 952  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1011

Query: 3265 VTVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRG 3444
            VTVDNISKALHKCGYQMRG+ETMYNGHTGRRL +MIFLGPTYYQRLKHMVDDKIHSRGRG
Sbjct: 1012 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1071

Query: 3445 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLI 3624
            PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLI
Sbjct: 1072 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLI 1131

Query: 3625 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1132 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1178



 Score =  771 bits (1990), Expect = 0.0
 Identities = 383/392 (97%), Positives = 388/392 (98%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 21   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 80

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 81   FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 140

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 141  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 200

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+KGGSSGQY
Sbjct: 201  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 260

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIR EIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 261  IRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 320

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVG GE+CETKKAYYFGYIIHRLLLC
Sbjct: 321  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGEFCETKKAYYFGYIIHRLLLC 380

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 381  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 412


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score = 1444 bits (3737), Expect = 0.0
 Identities = 708/766 (92%), Positives = 729/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW+GIHR+PDMLV T 
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 593

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDI LKELRIYTDYGRCSRPLFIV+KQRLLIKKKDI ALQQRES
Sbjct: 594  RKLRRRVDVNTEVGVVRDIILKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRES 653

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PEDGGWHDLVSKGF                  +DLVQAR  P++AY+ TYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYAGTYTHCEIHPSLI 713

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ ++AQGQA 
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM+
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRML 1179



 Score =  767 bits (1981), Expect = 0.0
 Identities = 381/392 (97%), Positives = 387/392 (98%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRV+KKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVVKKGHD 142

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQD TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 143  GEEVTETQDLTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+KGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 262

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DT MMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEAFVIQNQQ 322

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414


>ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Fragaria
            vesca subsp. vesca]
          Length = 1191

 Score = 1442 bits (3734), Expect = 0.0
 Identities = 707/767 (92%), Positives = 732/767 (95%), Gaps = 1/767 (0%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLT+DV+ YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTKDVKGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+P+MLV T 
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVRTL 590

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKKKDI ALQQRE+
Sbjct: 591  RKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQREN 650

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PEDGGWHDLV+KGF                  +DLVQAR  P+EAYSDTYTHCEIHPSLI
Sbjct: 651  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLI 710

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 770

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR NTMGMRHGSYDKL+DDGLAPPGTRVSGEDVIIGKT+PIA ++AQGQAA
Sbjct: 831  LVKEDFGRPDRANTMGMRHGSYDKLEDDGLAPPGTRVSGEDVIIGKTTPIAPEEAQGQAA 890

Query: 2908 -RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 3084
             RY++RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT
Sbjct: 891  SRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 950

Query: 3085 VGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 3264
            VGMTYTQEDMPWT+EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD
Sbjct: 951  VGMTYTQEDMPWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1010

Query: 3265 VTVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRG 3444
            VTVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRG
Sbjct: 1011 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRG 1070

Query: 3445 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLI 3624
            PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLI
Sbjct: 1071 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLI 1130

Query: 3625 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1131 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1177



 Score =  753 bits (1945), Expect = 0.0
 Identities = 371/390 (95%), Positives = 382/390 (97%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE+ADIEIRPESQHNPGHQPD
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIRPESQHNPGHQPD 79

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHD
Sbjct: 80   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 139

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 199

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFVRMLSRTS+KGGSSGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 259

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIR EIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQ 319

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGAT GV ++KRI+YA++ILQKEMLPHVG GE+CETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATAGVPRDKRIRYARDILQKEMLPHVGTGEFCETKKAYYFGYIIHRLLLC 379

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 1376
            ALGRRAEDDRDHYGNKRLDLAGPLLG LFR
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGSLFR 409


>gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1087

 Score = 1441 bits (3731), Expect = 0.0
 Identities = 707/766 (92%), Positives = 730/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVR+YVQK VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 314  LFRKLTRDVRAYVQKXVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 373

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 374  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 433

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T 
Sbjct: 434  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTL 493

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI  LQQRES
Sbjct: 494  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRES 553

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PE+GGWHDLV+KG+                  +DL QAR  P+EAYSDTYTHCEIHPSLI
Sbjct: 554  PEEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLXQARLNPEEAYSDTYTHCEIHPSLI 613

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 614  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 673

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAI+CYSGY+QEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 674  MEHLHFRQLPAGINAIVAISCYSGYSQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 733

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ DDAQGQA+
Sbjct: 734  LVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 793

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT++DHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 794  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 853

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 854  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 913

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 914  TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 973

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 974  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1033

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKK+SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1034 IANLKKSSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1079



 Score =  615 bits (1587), Expect = e-173
 Identities = 305/314 (97%), Positives = 311/314 (99%)
 Frame = +3

Query: 441  MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV 620
            MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV
Sbjct: 1    MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV 60

Query: 621  PIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 800
            PIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ
Sbjct: 61   PIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 120

Query: 801  PNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 980
            PNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF
Sbjct: 121  PNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 180

Query: 981  RALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKE 1160
            RALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT+E
Sbjct: 181  RALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRE 240

Query: 1161 KRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 1340
            KRIKYAKEILQKEMLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL
Sbjct: 241  KRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 300

Query: 1341 DLAGPLLGGLFRMV 1382
            DLAGPLLGG FRM+
Sbjct: 301  DLAGPLLGGXFRML 314


>ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Populus trichocarpa]
            gi|550340301|gb|EEE85647.2| hypothetical protein
            POPTR_0004s04320g [Populus trichocarpa]
          Length = 1215

 Score = 1440 bits (3728), Expect = 0.0
 Identities = 712/775 (91%), Positives = 730/775 (94%), Gaps = 9/775 (1%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 426  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 485

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 486  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 545

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T 
Sbjct: 546  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTL 605

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ+LLI+KKDI ALQQR S
Sbjct: 606  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRVS 665

Query: 2188 ---------PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYT 2340
                       +GGWHDLVSKGF                  HDLVQAR  P+EAYSDTYT
Sbjct: 666  HLIYNDHLFKYEGGWHDLVSKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYT 725

Query: 2341 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 2520
            HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
Sbjct: 726  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 785

Query: 2521 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSY 2700
            QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSY
Sbjct: 786  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 845

Query: 2701 RDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIA 2880
            RDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PIA
Sbjct: 846  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA 905

Query: 2881 GDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 3060
             ++AQGQ+ARYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 906  QEEAQGQSARYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 965

Query: 3061 SRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 3240
            SRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 966  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1025

Query: 3241 GDATPFTDVTVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDD 3420
            GDATPFTDVTVDNISKALHKCGYQMRG+ETMYNGHTGRRL++MIFLGPTYYQRLKHMVDD
Sbjct: 1026 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDD 1085

Query: 3421 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIH 3600
            KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+H
Sbjct: 1086 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVH 1145

Query: 3601 VCEICGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            VCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1146 VCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1200



 Score =  765 bits (1975), Expect = 0.0
 Identities = 384/400 (96%), Positives = 388/400 (97%), Gaps = 8/400 (2%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 27   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 86

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 87   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 146

Query: 567  GEEVTETQDFTKVFIGK--------VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 722
            GEEVTETQDFTKVFIGK        VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI
Sbjct: 147  GEEVTETQDFTKVFIGKASIMNYLFVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 206

Query: 723  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSA 902
            INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFVRMLSRTSA
Sbjct: 207  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRTSA 266

Query: 903  KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEE 1082
            KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEE
Sbjct: 267  KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEE 326

Query: 1083 AFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 1262
            AFVIQNQQVALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY
Sbjct: 327  AFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 386

Query: 1263 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 387  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 426


>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score = 1439 bits (3726), Expect = 0.0
 Identities = 705/766 (92%), Positives = 729/766 (95%)
 Frame = +1

Query: 1468 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1647
            LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 415  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 474

Query: 1648 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 1827
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 475  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 534

Query: 1828 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTX 2007
            LMVYITVGSAAYPILEFLEE GTENFEEISPAVIPQATKIFV+G W+GIHR+PDMLV T 
Sbjct: 535  LMVYITVGSAAYPILEFLEEXGTENFEEISPAVIPQATKIFVBGTWMGIHRDPDMLVRTL 594

Query: 2008 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDILALQQRES 2187
                  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ+LLIKKKDI  LQQRE+
Sbjct: 595  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQKLLIKKKDIQQLQQRET 654

Query: 2188 PEDGGWHDLVSKGFXXXXXXXXXXXXXXXXXXHDLVQARDRPQEAYSDTYTHCEIHPSLI 2367
            PE+GGWHDLV+KG+                  +DLVQA   P++AYSDTYTHCEIHPSLI
Sbjct: 655  PEEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQASINPEDAYSDTYTHCEIHPSLI 714

Query: 2368 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 2547
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 715  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 774

Query: 2548 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGT 2727
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGT
Sbjct: 775  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 834

Query: 2728 LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAGDDAQGQAA 2907
            LVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+ DDAQGQA+
Sbjct: 835  LVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 894

Query: 2908 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 3087
            RYT++DHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 895  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 954

Query: 3088 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 3267
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 955  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1014

Query: 3268 TVDNISKALHKCGYQMRGYETMYNGHTGRRLASMIFLGPTYYQRLKHMVDDKIHSRGRGP 3447
            TVDNISKALHKCGYQMRG+ETMYNGHTGRRL +MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1015 TVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1074

Query: 3448 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEICGLIA 3627
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1075 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1134

Query: 3628 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMM 3765
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+
Sbjct: 1135 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1180



 Score =  770 bits (1987), Expect = 0.0
 Identities = 383/392 (97%), Positives = 388/392 (98%)
 Frame = +3

Query: 207  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPD 386
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ D
Sbjct: 24   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 83

Query: 387  FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 566
            F ETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 84   FAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 143

Query: 567  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 746
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVL
Sbjct: 144  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 203

Query: 747  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQY 926
            IAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 204  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 263

Query: 927  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQ 1106
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 264  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQ 323

Query: 1107 VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 1286
            VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 324  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 383

Query: 1287 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMV 1382
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM+
Sbjct: 384  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 415