BLASTX nr result

ID: Mentha25_contig00051092 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00051092
         (452 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU23204.1| hypothetical protein MIMGU_mgv1a000506mg [Mimulus...    50   7e-08
gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus offic...    42   9e-08

>gb|EYU23204.1| hypothetical protein MIMGU_mgv1a000506mg [Mimulus guttatus]
          Length = 1109

 Score = 49.7 bits (117), Expect(2) = 7e-08
 Identities = 23/28 (82%), Positives = 23/28 (82%)
 Frame = -2

Query: 235 QSVGGCRAPNGFSDRTLPHFESGAKDAD 152
           QSVGG RAPNGF DRTLPHFE  AKD D
Sbjct: 503 QSVGGRRAPNGFVDRTLPHFEREAKDPD 530



 Score = 32.3 bits (72), Expect(2) = 7e-08
 Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 31/90 (34%)
 Frame = -3

Query: 414 KEKKVIPDDGYGHCTKRSYIWKLRTIITRPFL--------------------FG*VCMKN 295
           KEKKV  D GYG C      +K  ++   P                         VCM N
Sbjct: 412 KEKKVTIDKGYGQCIDYIGSYKSGSLDLLPGCNNAETLEANITGTLNNIRERTANVCMNN 471

Query: 294 LNWWNS-----------RPLIICPMIACVG 238
           L+W NS            P+ I  M+ACVG
Sbjct: 472 LHWRNSPLIMSQCGSKGSPINIAQMVACVG 501


>gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus officinalis]
          Length = 544

 Score = 41.6 bits (96), Expect(3) = 9e-08
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = -2

Query: 235 QSVGGCRAPNGFSDRTLPHFESGAK 161
           QSVGG RAPNGF DRTLPHF   +K
Sbjct: 293 QSVGGRRAPNGFIDRTLPHFPIKSK 317



 Score = 36.6 bits (83), Expect(3) = 9e-08
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 32/91 (35%)
 Frame = -3

Query: 414 KEKKVIPDDGYGHCTKRSYIWKLRTIITRP--------------------FLFG*VCMKN 295
           ++KK+  DDGYG C     +++ R +  RP                       G VCMK 
Sbjct: 202 QQKKMTIDDGYGRCISFIELYENRKLKLRPGANAAETLEVEITEVLNEIRKTAGDVCMKE 261

Query: 294 LNWWNSRPLI------------ICPMIACVG 238
           L+W NS PLI            I  MIACVG
Sbjct: 262 LHWRNS-PLIMSQCGSKGSAINISQMIACVG 291



 Score = 22.7 bits (47), Expect(3) = 9e-08
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 449 MGIDGVQPGDTLRRRR 402
           +GID VQPG+ L +++
Sbjct: 189 IGIDDVQPGERLNQQK 204


Top