BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00043361
         (1158 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]   448   e-123
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624...   439   e-120
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   430   e-118
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   430   e-118
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   430   e-118
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   430   e-118
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   429   e-118
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...   429   e-117
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   428   e-117
gb|AAB82754.1| retrofit [Oryza longistaminata]                        427   e-117
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  426   e-117
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   424   e-116
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   424   e-116
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   422   e-115
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   419   e-115
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...   419   e-115
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   418   e-114
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   417   e-114
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   416   e-113
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   415   e-113

>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
          Length = 1002

 Score =  448 bits (1153), Expect = e-123
 Identities = 221/385 (57%), Positives = 279/385 (72%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q+AG++F +TFSPV+K STIR+VFTLA T +W ++QID  NAFLNG++ +T+Y+SQP
Sbjct: 560  GFQQYAGVEFTDTFSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFLNGEITETVYLSQP 619

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GFV  ++P +VCKLQK+LYGLKQAPR W++KL+  L   GF  STSD SLF     G  
Sbjct: 620  AGFVSTSHPQHVCKLQKALYGLKQAPRVWFHKLREALHTWGFISSTSDTSLFIYKHNGNF 679

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
             L+LVYVDD+LITG++   V  +I +L+++F LK  G VK FLG E  +  +   L Q K
Sbjct: 680  LLLLVYVDDLLITGNNVPLVQTLIQDLQNRFALKDLGLVKDFLGFEALRTTTGLHLTQSK 739

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVFSNPSLYRSVVGSLQYLTLTRPDIAF 722
            Y  DLL KT M   KP  TPM    KL    G  FS+P+LYRS +G+LQYLT TRPDIAF
Sbjct: 740  YTTDLLIKTKMHSAKPVPTPMSAALKLHAASGPAFSDPTLYRSTIGALQYLTYTRPDIAF 799

Query: 723  SVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCDDM 902
            +VNKLSQ+LQ PT LHW ACKR+LRYLKG    GL F+PA    L  ++DADWA S DD 
Sbjct: 800  AVNKLSQYLQQPTELHWTACKRVLRYLKGIVHRGLHFTPASSLHLQVYTDADWASSIDDR 859

Query: 903  RSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQMEA 1082
            RST G+CVFLG NL  W+++KQ VV+RSST++EYR+LA+ + +V WL S+F ELG+ +  
Sbjct: 860  RSTTGYCVFLGTNLFTWSSRKQPVVARSSTKAEYRALAHASXEVAWLRSLFSELGISLVN 919

Query: 1083 VPKLWCDNSGAVALAANPVFHHRTK 1157
             P +WCDN GA ALAANPVFH RTK
Sbjct: 920  TPVIWCDNQGAGALAANPVFHSRTK 944


>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
          Length = 1682

 Score =  439 bits (1128), Expect = e-120
 Identities = 212/386 (54%), Positives = 273/386 (70%), Gaps = 1/386 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF Q  G+D+ ETFSPVVK ST+R++ +LA    W ++Q+DV NAFLNG L + +YM QP
Sbjct: 392  GFHQTQGVDYTETFSPVVKASTVRVILSLAVMNKWELRQVDVNNAFLNGILVEDVYMGQP 451

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLL-ELGFKRSTSDFSLFHRTVAGV 359
             GF+D + P +VCKL+K+LYGLKQAPRAW+ +LK  ++ + GF+ S SD SLF++ +   
Sbjct: 452  EGFIDPSRPLHVCKLKKALYGLKQAPRAWFERLKDAMVVKWGFQNSRSDNSLFYKWIGDQ 511

Query: 360  LSLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQ 539
            +  VLVYVDDI+ITG S   V  VI  +++ F LK  G + YFLGIEVT+  S   L Q 
Sbjct: 512  VIFVLVYVDDIIITGSSDKMVQQVITNMQNAFALKDLGKLSYFLGIEVTKTASGIYLSQS 571

Query: 540  KYIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVFSNPSLYRSVVGSLQYLTLTRPDIA 719
            KYI D+L+K NM  C P  TPM     L+KG G V SN S Y+S VG+LQY+TLTRP+IA
Sbjct: 572  KYIADILAKHNMADCSPVPTPMATGHYLTKGSGSVISNSSQYKSAVGALQYVTLTRPEIA 631

Query: 720  FSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCDD 899
            FSVNKLSQFL SPT  HW +CKRLLRYLKGT  +GL F       +NCFSD+DWA   DD
Sbjct: 632  FSVNKLSQFLASPTAEHWESCKRLLRYLKGTIHFGLHFYHYGTMQINCFSDSDWACDKDD 691

Query: 900  MRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQME 1079
             +S  G+ V+LG NL+ W++KKQ VVSRSSTE+EYR+LA  T +V W+ S+ +EL + + 
Sbjct: 692  RKSVAGYAVYLGSNLVSWSSKKQAVVSRSSTEAEYRALAQATAEVTWIQSLLKELHIHLV 751

Query: 1080 AVPKLWCDNSGAVALAANPVFHHRTK 1157
              P +WCDN  A+ALA NPV+H +TK
Sbjct: 752  TAPIMWCDNQSAIALAHNPVYHAKTK 777


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  430 bits (1106), Expect = e-118
 Identities = 208/387 (53%), Positives = 277/387 (71%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR++ +LA ++ W+++Q+DV NAFL+G LE+ +YM QP
Sbjct: 1013 GFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQP 1072

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GF D   P +VCKL K+LYGLKQAPRAW+++L   L++LGFK S  D SLF      + 
Sbjct: 1073 PGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDIT 1132

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VLVYVDDI++   S      ++ +L+ +F LK  G + YFLGIEV+++++  VL Q K
Sbjct: 1133 MFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDK 1192

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y +DLL K  M+ CKP +TP+ V+ KLS  EG +    + S YRSVVG+LQYLTLTRPDI
Sbjct: 1193 YANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDI 1252

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            AFSVNK+ QFL +PTT+HW A KR+LRYLK  +  GLE   +    ++ FSDADWAG  D
Sbjct: 1253 AFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVSGFSDADWAGCLD 1312

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  +FLG NL+ WNA+KQ  VSRSSTESEY+++AN T +++W+ ++  EL ++ 
Sbjct: 1313 DRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKS 1372

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
                K+WCDN GA  L+ANPVFH RTK
Sbjct: 1373 PKAAKIWCDNLGAKYLSANPVFHARTK 1399


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  430 bits (1106), Expect = e-118
 Identities = 208/387 (53%), Positives = 277/387 (71%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR++ +LA ++ W+++Q+DV NAFL+G LE+ +YM QP
Sbjct: 735  GFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQP 794

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GF D   P +VCKL K+LYGLKQAPRAW+++L   L++LGFK S +D SLF      + 
Sbjct: 795  PGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDIT 854

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VLVYVDDI++   S      ++  L+ +F LK  G + YFLGIEV+++++  VL Q K
Sbjct: 855  MFVLVYVDDIIVASSSEKATAALLQNLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDK 914

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y +DLL K  M+ CKP +TP+ V+ KLS  EG +    + S YRSVVG+LQYLTLTRPDI
Sbjct: 915  YANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDI 974

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            AFSVNK+ QFL +PTT+HW A KR+LRYLK  +  GLE   +    ++ FSDADWAG  D
Sbjct: 975  AFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVSGFSDADWAGCLD 1034

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  +FLG NL+ WNA+KQ  VSRSSTESEY+++AN T +++W+ ++  EL ++ 
Sbjct: 1035 DRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKS 1094

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
                K+WCDN GA  L+ANPVFH RTK
Sbjct: 1095 PKAAKIWCDNLGAKYLSANPVFHARTK 1121


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  430 bits (1106), Expect = e-118
 Identities = 209/387 (54%), Positives = 278/387 (71%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR+V ++A +R W ++Q+DV NAFL+G LE+ +YM QP
Sbjct: 1007 GFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQP 1066

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             G+ D++ P YVCKL K+LYGLKQAPRAWY++L   L +LGF+ S  D SLF     G++
Sbjct: 1067 PGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGGLI 1126

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VL+YVDDI++T      V  ++ +L+ +F LK  G++ YFLGIEV ++    +L Q K
Sbjct: 1127 IFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDK 1186

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVFS--NPSLYRSVVGSLQYLTLTRPDI 716
            Y  DLL + NM  CKP STP+  + KLS  EG++    + + YRSVVG+LQYLTLTRPDI
Sbjct: 1187 YACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDI 1246

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            AF VNK+ QFL +PTT+HWAA KR+LRYLK  +  GL+   +    ++ +SDADWAGS D
Sbjct: 1247 AFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTKLGLKLCKSKSMLVSAYSDADWAGSLD 1306

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  VFLG NL+ W A+KQ  VSRSSTESEY++LAN T +++W+ ++  EL +Q 
Sbjct: 1307 DRRSTGGFAVFLGDNLVSWCARKQATVSRSSTESEYKALANATAEIMWVQTLLTELQVQS 1366

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
              + KLWCDN GA  L++NPVFH RTK
Sbjct: 1367 PPMAKLWCDNLGAKYLSSNPVFHARTK 1393


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  430 bits (1105), Expect = e-118
 Identities = 208/387 (53%), Positives = 282/387 (72%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR++ ++A ++ W ++Q+DV NAFL+G LE+ +YM QP
Sbjct: 807  GFKQRYGIDYEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQP 866

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             G+ D + P YVCKL K+LYGLKQAPRAWY++L   L ++GF+ S +D SLF      ++
Sbjct: 867  PGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLI 926

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VL+YVDDI++T      V  ++ +L+ +F LK  G++ YFLGIEVT++    VL Q K
Sbjct: 927  IFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDK 986

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y++DLL + NM  CKP STP+  + KLS  EG+    ++ + YRSVVG+LQYLTLTRPDI
Sbjct: 987  YVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDI 1046

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            AF VNK+ QFL +PTT HWAA KR+LRYLK  +  GL+ S +    ++ +SDADWAGS D
Sbjct: 1047 AFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVSAYSDADWAGSLD 1106

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  VFLG NL+ W+A+KQ  VSRSSTESEY++LAN T +++W+ ++  EL ++ 
Sbjct: 1107 DRRSTGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVES 1166

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
             ++ KLWCDN GA  L+ANPVFH RTK
Sbjct: 1167 PSMAKLWCDNLGAKYLSANPVFHARTK 1193


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  429 bits (1104), Expect = e-118
 Identities = 211/385 (54%), Positives = 265/385 (68%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF Q AG DF ETFSPVVK ST+R+VFT+A +R+WA++Q+DV NAFLNGDL++ ++M QP
Sbjct: 1005 GFHQQAGFDFTETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVFMQQP 1064

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GF+D+ NP  VC+L K+LYGLKQAPRAW+ KL   LL  GF  + SD SLF R     +
Sbjct: 1065 QGFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNHI 1124

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
            + VLVYVDDIL+ G  +A +  +I +L S+F LK  G V YFLGI+V+   +   L Q K
Sbjct: 1125 TYVLVYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTK 1184

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVFSNPSLYRSVVGSLQYLTLTRPDIAF 722
            YI DLL KT MV CKP  TP+    KL  G+G+   +   YRS VG+LQY+T+TRP+++F
Sbjct: 1185 YIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSF 1244

Query: 723  SVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCDDM 902
            SVNK+ QF+Q+PT  HW   KR+LRYL+GT  +GL    +    L  F DADWA   DD 
Sbjct: 1245 SVNKVCQFMQNPTEEHWKVVKRILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDR 1304

Query: 903  RSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQMEA 1082
            RST GHCVFLG NLI W +KKQ +VSRSS E EYRSLA L  ++ WL S+  EL L +  
Sbjct: 1305 RSTSGHCVFLGPNLISWQSKKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAK 1364

Query: 1083 VPKLWCDNSGAVALAANPVFHHRTK 1157
             P +WCDN   V L+ANPV H RTK
Sbjct: 1365 PPLVWCDNLSTVLLSANPVLHARTK 1389


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score =  429 bits (1102), Expect = e-117
 Identities = 207/387 (53%), Positives = 277/387 (71%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR++ +LA ++ W+++Q+DV NAFL+G LE+ +YM QP
Sbjct: 1006 GFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQP 1065

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GF D   P +VCKL K+LYGLKQAPRAW+++L   L++LGFK S +D SLF      + 
Sbjct: 1066 PGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDIT 1125

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VLVYVDDI++   S      ++ +L+ +F LK  G + YFLGIEV+++++  VL Q K
Sbjct: 1126 MFVLVYVDDIIVASSSERATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDK 1185

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y +DLL K  M+ CKP +TP+ V+ KLS  EG +    + S YRSVVG+LQYLTLTRPDI
Sbjct: 1186 YANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDI 1245

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            AFSVNK+ QFL +PTT+HW A KR+LRYLK  +  GLE   +    ++ FSDADWAG  D
Sbjct: 1246 AFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVSGFSDADWAGCLD 1305

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  +FLG NL+ WNA+KQ  VSRSS ESEY+++AN T +++W+ ++  EL ++ 
Sbjct: 1306 DRRSTGGFAIFLGSNLVSWNARKQATVSRSSIESEYKAIANATAEIMWVQTLLAELEIKS 1365

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
                K+WCDN GA  L+ANPVFH RTK
Sbjct: 1366 PKAAKIWCDNLGAKYLSANPVFHARTK 1392


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  428 bits (1101), Expect = e-117
 Identities = 213/386 (55%), Positives = 279/386 (72%), Gaps = 1/386 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF Q  G+++ ETFSPVVK STIR++  +A + +W+V Q+DV NAFL+GDLE+ ++M QP
Sbjct: 780  GFTQTLGLBYFETFSPVVKASTIRIILAVALSFNWSVHQLDVQNAFLHGDLEEHVFMQQP 839

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLF-HRTVAGV 359
             GF++   P++VCKL K+LYGLKQAPRAWYNKL + LL  GF+ S +D S+F H +   V
Sbjct: 840  PGFINSQYPSHVCKLNKALYGLKQAPRAWYNKLSTSLLGWGFQASRADSSMFIHHSTHDV 899

Query: 360  LSLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQ 539
            L ++L+YVDDIL+TG SSA+V   I  L S F L+  G V YFLGIEV +  + F L Q 
Sbjct: 900  L-ILLIYVDDILVTGSSSAQVSSFITRLNSSFALRDLGYVNYFLGIEVVRSGTMFHLSQH 958

Query: 540  KYIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVFSNPSLYRSVVGSLQYLTLTRPDIA 719
            KY  DLLS+T M+  KP +TP ++   LS  +GE FS+ +LYRS VG+LQYLTLTRPDI+
Sbjct: 959  KYTQDLLSRTAMLDSKPATTPGLLGQTLSHLDGEPFSDATLYRSTVGALQYLTLTRPDIS 1018

Query: 720  FSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCDD 899
            F+VNK  QF+ +PTT HW A KR+LRYLKGT  YG++   +    ++ ++DADWA   DD
Sbjct: 1019 FAVNKACQFMATPTTTHWLAVKRILRYLKGTLSYGIQMQQSTSLDIHGYTDADWASCPDD 1078

Query: 900  MRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQME 1079
             RSTGG+ +FLG NL+ W++ KQ VVSRSS ESEYR+LA+ T++++W+  V QEL L   
Sbjct: 1079 RRSTGGYGIFLGPNLVSWSSNKQKVVSRSSAESEYRALASATSEMIWIQYVLQELCLSSS 1138

Query: 1080 AVPKLWCDNSGAVALAANPVFHHRTK 1157
            + P LWCDN  A  LAANPVFH RTK
Sbjct: 1139 SPPLLWCDNKSAAHLAANPVFHARTK 1164


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  427 bits (1098), Expect = e-117
 Identities = 204/387 (52%), Positives = 279/387 (72%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR++ ++A +R W+++Q+DV NAFL+G LE+ +YM QP
Sbjct: 1005 GFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQP 1064

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GF   + P YVCKL K+LYGLKQAPRAWY++L   L+ELGF+ S +D SLF     G+L
Sbjct: 1065 PGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIL 1124

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VLVYVDDI++   +      ++ +L  +F LK  G++ YFLGIEVT++ +  +L Q+K
Sbjct: 1125 MFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEK 1184

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y +DLL + NM  CKP STP+ V+ KL+  EG     ++   YRS+VG+LQYLTLTRPDI
Sbjct: 1185 YANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDI 1244

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            A+SVNK+ QFL +PTT HW A KR+LRYL   +  GL    +    ++ +SDADWAGS D
Sbjct: 1245 AYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLVHGYSDADWAGSID 1304

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D +STGG  VFLG NL+ W+A+KQ  VSRSSTE+EY+++AN T +++W+ ++ +ELG++ 
Sbjct: 1305 DRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIES 1364

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
                K+WCDN GA  L+ANPVFH RTK
Sbjct: 1365 PKAAKIWCDNLGAKYLSANPVFHARTK 1391


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  426 bits (1096), Expect = e-117
 Identities = 205/387 (52%), Positives = 279/387 (72%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR++ ++A +R W+++Q+DV NAFL+G LE+ +YM QP
Sbjct: 996  GFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQP 1055

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GF   + P YVCKL K+LYGLKQAPRAWY++L   L+ELGF+ S +D SLF     G++
Sbjct: 1056 PGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGII 1115

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VLVYVDDI+I   +      ++ +L  +F LK  G++ YFLGIEVT++ +  VL Q+K
Sbjct: 1116 MFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEK 1175

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y +DLL + NM  CKP STP+ V+ KL+  EG     ++ + YRS+VG+LQYLTLTRPDI
Sbjct: 1176 YANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDI 1235

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            A+SVNK+ QFL +PTT HW A KR+LRYL   +  GL    +    ++ +SDADWAGS D
Sbjct: 1236 AYSVNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSASTLVHGYSDADWAGSVD 1295

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D +STGG  VFLG NL+ W+A+KQ  VSRSSTE+EY+++AN T +++W+ ++ +ELG+  
Sbjct: 1296 DRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDS 1355

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
                K+WCDN GA  L+ANPVFH RTK
Sbjct: 1356 PKAAKIWCDNLGAKYLSANPVFHARTK 1382


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  424 bits (1090), Expect = e-116
 Identities = 209/387 (54%), Positives = 277/387 (71%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR+V +LA +R W+++Q+DV NAFL+G LE+ +YM QP
Sbjct: 375  GFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQP 434

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             G+  ++ P YVCKL K+LYGLKQAPRAWY++L + L ELGF  S +D SLF      V 
Sbjct: 435  PGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVS 494

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              +L+YVDDI++          ++ EL   F LK  G++ YFLGIEV +++   +L Q+K
Sbjct: 495  IFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEK 554

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVFS--NPSLYRSVVGSLQYLTLTRPDI 716
            Y  DLL +  M +CKP STP+  + KLS  EG +    + + YRSVVG+LQYLTLTRPDI
Sbjct: 555  YASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDI 614

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            +FS+NK+ QFL +PTT HWAA KR+LRY+K T   GL+F   P   ++ FSDADWAGS D
Sbjct: 615  SFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPD 674

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  VFLG NL+ W+A+KQ  VSRSSTE+EY++LAN T +++W+ ++ QELG++ 
Sbjct: 675  DRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVES 734

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
                KLWCDN GA  L+ANP+FH RTK
Sbjct: 735  PRAAKLWCDNLGAKYLSANPIFHARTK 761


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  424 bits (1089), Expect = e-116
 Identities = 207/387 (53%), Positives = 276/387 (71%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR++ ++A +R W ++Q+DV NAFL+G LE+ +YM QP
Sbjct: 816  GFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQP 875

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             G+ D+ +P YVCKL K+LYGLKQAPRAWY KL   L  LGF+ S +D SLF     G++
Sbjct: 876  PGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSLFFYNKGGLI 935

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VLVYVDDI++       V  ++ +L+  F LK  G++ YFLGIEV +  S  VL Q+K
Sbjct: 936  IFVLVYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDLHYFLGIEVNKASSGIVLTQEK 995

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y+ DLL +  M  CKP STP+  + KL+  EG++   ++ S YRSVVG+LQYLTLTRPDI
Sbjct: 996  YVTDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDI 1055

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
             F VNK+ QFL +PT +HWAA KR+LRYLK  +  GL+ S +    ++ +SDADWAG+ D
Sbjct: 1056 YFPVNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLKISKSKSMLVSGYSDADWAGNID 1115

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  VFLG NL+ WNAKKQ  V RSSTESEY++LAN T +++W+ ++ +EL +  
Sbjct: 1116 DRRSTGGFAVFLGDNLVSWNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEELSVPS 1175

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
              + +LWCDN GA  L++NPVFH RTK
Sbjct: 1176 PPMARLWCDNLGAKYLSSNPVFHARTK 1202


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  422 bits (1086), Expect = e-115
 Identities = 208/387 (53%), Positives = 276/387 (71%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR+V +LA +R W+++Q+DV NAFL+G LE+ +YM QP
Sbjct: 953  GFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQP 1012

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             G+  ++ P YVCKL K+LYGLKQAPRAWY++L + L ELGF  S +D SLF      V 
Sbjct: 1013 PGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVS 1072

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              +L+YVDDI++          ++ EL   F LK  G++ YFLGIEV +++   +L Q+K
Sbjct: 1073 IFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEK 1132

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y  DLL +  M +CKP STP+  + KLS  EG +    + + YRSVVG+LQYLTLTRPDI
Sbjct: 1133 YASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDI 1192

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            +FS+NK+ QFL +PTT HWAA KR+LRY+K T   GL+F   P   ++ FSDADWAGS D
Sbjct: 1193 SFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPD 1252

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  VFLG NL+ W+A+KQ  VSRSS E+EY++LAN T +++W+ ++ QELG++ 
Sbjct: 1253 DRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVES 1312

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
                KLWCDN GA  L+ANP+FH RTK
Sbjct: 1313 PRAAKLWCDNLGAKYLSANPIFHARTK 1339


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  419 bits (1078), Expect = e-115
 Identities = 206/387 (53%), Positives = 273/387 (70%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFS VVK +TIRL+ ++A ++ W+++Q+DV NAFL+G LE+ +YM QP
Sbjct: 494  GFKQRYGIDYEDTFSLVVKAATIRLILSIAVSKGWSLRQLDVQNAFLHGYLEEEVYMRQP 553

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GF ++  P Y+CKL K+LYGLKQAPRAWY++L + L ELGF  S +D SLF     G  
Sbjct: 554  PGFENKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKADTSLFFYNKGGCT 613

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              +LVYVDDI++   S+  V  ++ +L   F LK  G++ YFLGIEV ++    VL Q  
Sbjct: 614  IFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAW 673

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y  D+L +  M  CKP STP+  T KLS  +G+    ++ S YRS+VG+LQYLTLTR D+
Sbjct: 674  YASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDL 733

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            +F VNK+ QFL SPTT+HW+A KR+LRY+KGT  +GL F  +    ++ FSDADWAG  D
Sbjct: 734  SFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLISAFSDADWAGCSD 793

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  VFLG NLI W+A+KQ  VSRSSTE+EY++LAN TT+V W+  +  EL +  
Sbjct: 794  DRRSTGGFAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVTWVRKILDELRIAR 853

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
             +V +LWCDN GA  L+ANPVFH RTK
Sbjct: 854  PSVAQLWCDNLGATYLSANPVFHARTK 880


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  419 bits (1078), Expect = e-115
 Identities = 204/387 (52%), Positives = 276/387 (71%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            G +Q  GID+E+TFSPVVK +TIRLV ++A +R W ++Q+DV NAFL+G LE+ +YM QP
Sbjct: 634  GIKQRYGIDYEDTFSPVVKAATIRLVLSIAVSRGWTLRQLDVHNAFLHGILEEEVYMKQP 693

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             G+ D+ANP  +CKL K+LYGLKQAPRAWY +L   L +LGF+ S +D SLF     G+ 
Sbjct: 694  PGYEDKANPGCICKLDKALYGLKQAPRAWYARLSQKLQQLGFQGSKADTSLFFYNKQGLT 753

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VL+YVDDI++       VL ++ +L+ +F LK  G++ YFLGIEV +I +  +L Q+K
Sbjct: 754  IFVLIYVDDIIVASSRQDAVLTLLQDLQKEFALKDLGDLHYFLGIEVNKISNGIILTQEK 813

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEV--FSNPSLYRSVVGSLQYLTLTRPDI 716
            Y +DLL +  M+ CKP S  +  + KL+  EG++   ++ S YRSVVG+LQYLTLTRPDI
Sbjct: 814  YANDLLKRVGMIDCKPVSASLSTSEKLTLHEGDLLGLNDASNYRSVVGALQYLTLTRPDI 873

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            AF VNK+ QFL +PTT+HWA  KR+LRYLK  +  GL+ S +    ++ +SD DWAG+ D
Sbjct: 874  AFPVNKVCQFLHAPTTIHWATVKRILRYLKQCTKLGLKISKSKSMLVSGYSDTDWAGNVD 933

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RST G  VFLG NL+ WNA+KQ  VSRSSTESEY+ LAN T +++W+ ++  ELG+  
Sbjct: 934  DRRSTRGFAVFLGDNLVSWNARKQATVSRSSTESEYKVLANATAEIMWIQTLLAELGVSS 993

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
              + +LWCDN GA  L++NPVFH RTK
Sbjct: 994  PLMARLWCDNLGAKYLSSNPVFHARTK 1020


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  418 bits (1075), Expect = e-114
 Identities = 200/387 (51%), Positives = 277/387 (71%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR++ ++A +R W+++Q+DV N FL+G LE+ +YM QP
Sbjct: 1008 GFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQP 1067

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GF   + P YVCKL K+LYGLKQAPRAWY++L   L ELGF+ S +D SLF     G++
Sbjct: 1068 PGFESSSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKGGII 1127

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VLVYVDDI++   +      ++ +L  +F LK  G++ YFLGIEVT++ +  +L Q+K
Sbjct: 1128 MFVLVYVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEK 1187

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y +D+L + NM  CKP STP+ V+ KL+  EG     ++ + YRS+VG+LQYLTLTRPDI
Sbjct: 1188 YANDMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDI 1247

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            A+SVNK+ QFL +PTT HW A KR+LRYL   +  GL    +    ++ +SDAD AGS D
Sbjct: 1248 AYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHVHKSASTLVHGYSDADGAGSID 1307

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D +STGG  VFLG NL+ W+A+KQ  VSRSSTE+EY+++AN T +++W+ +V +ELG++ 
Sbjct: 1308 DRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIES 1367

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
                K+WCDN GA  L+ANPVFH +TK
Sbjct: 1368 PKAAKIWCDNLGAKYLSANPVFHAKTK 1394


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  417 bits (1071), Expect = e-114
 Identities = 203/387 (52%), Positives = 268/387 (69%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            G++Q  GID+++TFSPVVK +TIR++ ++A +R W++ Q+DV NAFL+G LE+ +YM QP
Sbjct: 873  GYKQQYGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVLEEEVYMQQP 932

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             G+ D     YVCKL K+LYGLKQAPRAWY++L + LL LGF+ S +D SLF      V 
Sbjct: 933  PGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVT 992

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              VLVYVDDI++   +      ++ +L  +F LK  G++ YFLGIEV ++    +L Q K
Sbjct: 993  IFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDK 1052

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVFSNPSL--YRSVVGSLQYLTLTRPDI 716
            Y  DLL K  M  CKP STP+  + KLS  EG       +  YRS+VG+LQYLTLTRPDI
Sbjct: 1053 YASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDI 1112

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            AFSVNK+ QFL +PTTLHWAA KR+LRY+K  +  GL    +    ++ FSDADWAGS D
Sbjct: 1113 AFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLVSAFSDADWAGSVD 1172

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D +STGG  VFLG NL+ W+A+KQ  VSRSSTESEY++LAN T +++W+  +  E+ ++ 
Sbjct: 1173 DRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKS 1232

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
                KLWCDN GA  L+ANP+FH RTK
Sbjct: 1233 PRAAKLWCDNLGAKYLSANPIFHARTK 1259


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  416 bits (1068), Expect = e-113
 Identities = 212/385 (55%), Positives = 268/385 (69%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF Q  GID+ +TFSPVVK  TIRL+  LA +  W+V+Q+DV NAFLNGDLE+ ++M+QP
Sbjct: 927  GFTQTPGIDYFDTFSPVVKPCTIRLILALAVSFQWSVRQLDVENAFLNGDLEEEVFMTQP 986

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             GFV+   PTYVCKL K+LYGLKQAPRAW+ KL+  LL+ GF+ S +D SLF    A  +
Sbjct: 987  QGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSSRADTSLFIFHTATDI 1046

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
             ++LVYVDDIL+TG +   V   I  LR++F L+  G + YFLGI+  Q+ S   L Q K
Sbjct: 1047 LILLVYVDDILVTGSNPMLVSHFISYLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQHK 1106

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVFSNPSLYRSVVGSLQYLTLTRPDIAF 722
            YI DLL++T M   KP  TP  +   LS+ +G   S+PS YR  VG+LQY+TLTRPDIAF
Sbjct: 1107 YIADLLNRTQMETSKPAPTPGRLGRTLSQSDGMSLSDPSEYRRTVGALQYVTLTRPDIAF 1166

Query: 723  SVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCDDM 902
            +VNK  QF+  P+ +HW A KR+LRYLKGT   GL F PA    L  +SDADWA   DD 
Sbjct: 1167 AVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASMELQGYSDADWASCPDDR 1226

Query: 903  RSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQMEA 1082
            RST G+CVFLG NLI W++ KQ +VS+SS ESEYR L +LT +++W+ S+ QEL L   +
Sbjct: 1227 RSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGLVSLTAELVWIQSLLQELCLP-TS 1285

Query: 1083 VPKLWCDNSGAVALAANPVFHHRTK 1157
             P LWCDN  A  LAANPVFH R+K
Sbjct: 1286 PPILWCDNQSAAHLAANPVFHSRSK 1310


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  415 bits (1066), Expect = e-113
 Identities = 200/387 (51%), Positives = 274/387 (70%), Gaps = 2/387 (0%)
 Frame = +3

Query: 3    GFEQFAGIDFEETFSPVVKLSTIRLVFTLAATRHWAVQQIDVTNAFLNGDLEDTIYMSQP 182
            GF+Q  GID+E+TFSPVVK +TIR++ ++A +R W ++Q+DV NAFL+G LE+ +YM QP
Sbjct: 991  GFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQP 1050

Query: 183  TGFVDQANPTYVCKLQKSLYGLKQAPRAWYNKLKSCLLELGFKRSTSDFSLFHRTVAGVL 362
             G+ + + P YVCKL K+LYGLKQAPRAWY++L   L +LGFK S +D SLF      + 
Sbjct: 1051 PGYENPSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLT 1110

Query: 363  SLVLVYVDDILITGDSSAEVLLVIDELRSQFKLKAFGNVKYFLGIEVTQIESRFVLGQQK 542
              +L+YVDDI++       V  ++ +L+ +F LK  G++ YFLGIEVT+I    ++ Q+K
Sbjct: 1111 IFLLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEK 1170

Query: 543  YIHDLLSKTNMVQCKPCSTPMVVTPKLSKGEGEVF--SNPSLYRSVVGSLQYLTLTRPDI 716
            Y  DLL + NM  CK  +TP+  + KL  G+G +   ++ + YRS+VG+LQYLTLTR DI
Sbjct: 1171 YASDLLKRVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDI 1230

Query: 717  AFSVNKLSQFLQSPTTLHWAACKRLLRYLKGTSFYGLEFSPAPIFALNCFSDADWAGSCD 896
            AFSVNK+ QFL +PTT HWAA KR+LRY+K  +  GL    +    ++ +SDADWAG  D
Sbjct: 1231 AFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMIVSGYSDADWAGCLD 1290

Query: 897  DMRSTGGHCVFLGGNLIVWNAKKQDVVSRSSTESEYRSLANLTTDVLWLMSVFQELGLQM 1076
            D RSTGG  V+LG NL+ WNAKKQ  VSRSSTE+EY++LAN T +++W+ ++ QEL +  
Sbjct: 1291 DRRSTGGFAVYLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVS 1350

Query: 1077 EAVPKLWCDNSGAVALAANPVFHHRTK 1157
             A+ +LWCDN GA  L+ NPVFH RTK
Sbjct: 1351 PAMAQLWCDNMGAKYLSFNPVFHARTK 1377