BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00041736
         (879 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...   170   4e-72
ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252...   134   2e-46
ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854...   132   1e-45
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   131   3e-45
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]   130   8e-45
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]          124   2e-41
gb|ABI34306.1| Polyprotein, putative [Solanum demissum]               120   6e-41
ref|XP_006403332.1| hypothetical protein EUTSA_v10003415mg [Eutr...   123   6e-41
emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]   114   2e-39
ref|XP_004233808.1| PREDICTED: uncharacterized protein LOC101263...   116   7e-39
gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s...   111   5e-38
gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subc...   112   2e-37
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...   112   2e-37
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...   112   2e-37
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc...   110   7e-37
gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subc...   109   9e-37
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]     109   9e-37
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ...   109   2e-36
gb|AAM95676.1| putative polyprotein [Oryza sativa Japonica Group]     110   2e-36
gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group...   109   3e-36

>gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 1034

 Score =  170 bits (430), Expect(2) = 4e-72
 Identities = 78/121 (64%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
 Frame = +3

Query: 498 QDDDVSWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGN 677
           QDD+V+WW+DSGAT HVCKD  WFK ++P++DGS+L MGN +T PI G G V L F+SG 
Sbjct: 261 QDDEVAWWIDSGATIHVCKDRGWFKTYEPVQDGSVLYMGNESTAPILGRGKVVLEFSSGK 320

Query: 678 SLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGYL-NGMFKLNL 854
           +L L++V++VPGIRKNLVS  VLN CG+KQV+ESDKY+LS+ G FVGFGY  NGMF LN+
Sbjct: 321 TLDLNDVIHVPGIRKNLVSGSVLNKCGFKQVYESDKYVLSKCGVFVGFGYFCNGMFMLNI 380

Query: 855 D 857
           +
Sbjct: 381 N 381



 Score =  129 bits (324), Expect(2) = 4e-72
 Identities = 72/153 (47%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
 Frame = +2

Query: 50  QFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVELGSHFQIEQSIRDMEK 229
           QF Q++M MDE ISVS IIDKLPPSWK F+  LKHKKEEL+LV+LGSH +IE+S+R  E 
Sbjct: 88  QFAQHNMNMDESISVSCIIDKLPPSWKGFRRMLKHKKEELSLVQLGSHLRIEESLRVQEG 147

Query: 230 FYVGDTKTVVGSSVNMVXXXXXXXXXXXXXXXXRKFQGNKSKAPNKKSKLTCWKCGKAGH 409
               D K    SS+NM+                R F  N +   NK+ K  CW C K GH
Sbjct: 148 GKPKD-KEAETSSINMM--KESGSSKMKNKGKKRPFTNNTNDGSNKRFKSVCWICNKPGH 204

Query: 410 FKKDCRSGKSGGKGKNEDGSSGSK--DPGNQSG 502
           FK+DCR+ K   K + +    GSK  DP +  G
Sbjct: 205 FKRDCRAAKDKNKMQQKRFGQGSKDQDPSSHQG 237


>ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252656 [Vitis vinifera]
          Length = 946

 Score =  134 bits (336), Expect(2) = 2e-46
 Identities = 65/114 (57%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
 Frame = +3

Query: 516 WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSN 695
           WW+D+GAT HVC D + F  F+PIE+G  + MGN  T  IKG G V L  TSG  L+L+N
Sbjct: 336 WWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSTTSEIKGQGKVILKMTSGKELTLTN 395

Query: 696 VLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGYL-NGMFKLNL 854
           VLYVP IRKNLVS  +LNN G++ VFES+K++LS+ G +VG GY+ +GM+KLN+
Sbjct: 396 VLYVPEIRKNLVSGSLLNNHGFRLVFESNKFVLSKSGMYVGKGYMSDGMWKLNV 449



 Score = 79.7 bits (195), Expect(2) = 2e-46
 Identities = 50/145 (34%), Positives = 70/145 (48%)
 Frame = +2

Query: 2   SRLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVE 181
           S+ V+ Q  EL  IL +     M + E   V++II+KLPP+WKDFKN LKHK++E+++ +
Sbjct: 155 SKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNCLKHKRKEMSIED 214

Query: 182 LGSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMVXXXXXXXXXXXXXXXXRKFQGNKSKAP 361
           L    +IE+  R  EK  V        + V                      +G  SK P
Sbjct: 215 LIIRLRIEEDNRRSEKKGVHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKP 274

Query: 362 NKKSKLTCWKCGKAGHFKKDCRSGK 436
             + K  C+ CGK GH   DCR  K
Sbjct: 275 KFQGK--CFNCGKQGHKSVDCRLPK 297


>ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854178, partial [Vitis
           vinifera]
          Length = 478

 Score =  132 bits (333), Expect(2) = 1e-45
 Identities = 65/114 (57%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
 Frame = +3

Query: 516 WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSN 695
           WW+D+GAT HVC D + F  F+PIE+G  + MGN AT  IKG G V L  TSG  L+L+N
Sbjct: 336 WWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTN 395

Query: 696 VLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGYL-NGMFKLNL 854
           VLYVP IRKNLVS  +LNN G++ VF+S+K +LS+ G +VG GY+ +GM+KLN+
Sbjct: 396 VLYVPEIRKNLVSGSLLNNHGFRLVFDSNKVVLSKSGMYVGKGYMSDGMWKLNV 449



 Score = 78.2 bits (191), Expect(2) = 1e-45
 Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
 Frame = +2

Query: 2   SRLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVE 181
           S+ V+ Q  EL  IL +     M + E   V++II+KLPP+WKDFKN LKHK++E+++ +
Sbjct: 155 SKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIED 214

Query: 182 LGSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMVXXXXXXXXXXXXXXXXRKFQGNK---S 352
           L    +IE+  R  EK       T+  +  N V                    G K   S
Sbjct: 215 LIIRLRIEEDNRRSEK---KGAHTLNEAKANFVEHGQSSNAKTNNNKGKGSKLGPKGGIS 271

Query: 353 KAPNKKSKLTCWKCGKAGHFKKDCRSGK 436
           K P  + K  C+ CGK GH   DCR  K
Sbjct: 272 KKPKFQGK--CFNCGKQGHKSVDCRLPK 297


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  131 bits (330), Expect(2) = 3e-45
 Identities = 65/114 (57%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = +3

Query: 516 WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSN 695
           WW+D+GAT HVC D + F  F+PIE+G  + MGN AT  IKG G V L  TSG  L+L+N
Sbjct: 336 WWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTN 395

Query: 696 VLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGYL-NGMFKLNL 854
           VLYVP IRKNLVS  +LNN G++ VF S+K +LS+ G +VG GY+ +GM+KLN+
Sbjct: 396 VLYVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSKSGMYVGKGYMSDGMWKLNV 449



 Score = 78.2 bits (191), Expect(2) = 3e-45
 Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
 Frame = +2

Query: 2   SRLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVE 181
           S+ V+ Q  EL  IL +     M + E   V++II+KLPP+WKDFKN LKHK++E+++ +
Sbjct: 155 SKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIED 214

Query: 182 LGSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMVXXXXXXXXXXXXXXXXRKFQGNK---S 352
           L    +IE+  R  EK       T+  +  N V                    G K   S
Sbjct: 215 LIIRLRIEEDNRRSEK---KGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGIS 271

Query: 353 KAPNKKSKLTCWKCGKAGHFKKDCRSGK 436
           K P  + K  C+ CGK GH   DCR  K
Sbjct: 272 KKPKFQGK--CFNCGKQGHKSVDCRLPK 297


>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
          Length = 1277

 Score =  130 bits (327), Expect(2) = 8e-45
 Identities = 71/156 (45%), Positives = 96/156 (61%), Gaps = 16/156 (10%)
 Frame = +3

Query: 435 RVEEKGKTRMVQVDPRIPETNQDDDVS---------------WWVDSGATCHVCKDLQWF 569
           R+ +K K +   V   I +   D D++               WW+D+GAT HVC D + F
Sbjct: 294 RLPKKNKPKEANVIDNITKNVSDIDLTTVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMF 353

Query: 570 KDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLN 749
             F+PIE+G  + MGN  T  IKG G V L  TSG  L+L+NVLYVP IRKNLV   +LN
Sbjct: 354 STFEPIENGEKVFMGNSTTSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVFGSLLN 413

Query: 750 NCGYKQVFESDKYILSRHGSFVGFGYL-NGMFKLNL 854
           N G++ VFES+K +LS+ G +VG GY+ +GM+KLN+
Sbjct: 414 NHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLNV 449



 Score = 77.8 bits (190), Expect(2) = 8e-45
 Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
 Frame = +2

Query: 2   SRLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVE 181
           S+ V+ Q  EL  IL +     M + E   V++II+KLPP+WKDFKN LKHK++E+++ +
Sbjct: 155 SKTVVSQVQELQVILHEIHADGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIED 214

Query: 182 LGSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMVXXXXXXXXXXXXXXXXRKFQGNK---S 352
           L    +IE+  R  EK       T+  +  N V                    G K   S
Sbjct: 215 LIIRLRIEEDNRRSEK---KGAHTLNEAQANFVEHGQSSKAKTNNNKGKGSKLGPKGGIS 271

Query: 353 KAPNKKSKLTCWKCGKAGHFKKDCRSGK 436
           K P  + K  C+ CGK GH   DCR  K
Sbjct: 272 KKPKFQGK--CFNCGKQGHKSVDCRLPK 297


>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score =  124 bits (311), Expect(2) = 2e-41
 Identities = 62/114 (54%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
 Frame = +3

Query: 516 WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSN 695
           WW+D+GAT HVC D   F  F+   +   L MGN AT  I+G G V+L  TSG  L+L+N
Sbjct: 325 WWIDTGATRHVCSDKGLFTSFEAASNREKLFMGNSATSEIEGQGKVALKMTSGKELTLNN 384

Query: 696 VLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGYLN-GMFKLNL 854
           VLYVP IRKNLVS  +LN  G++ VFESD  +LS++G +VG GY+N G+FKLN+
Sbjct: 385 VLYVPEIRKNLVSGSLLNKHGFRMVFESDMVVLSKNGMYVGKGYVNDGLFKLNV 438



 Score = 72.4 bits (176), Expect(2) = 2e-41
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
 Frame = +2

Query: 2   SRLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVE 181
           S+ V+ Q  EL  IL +     M + E   V++II+KLPP+WKDFK+ LKHK++E+ +  
Sbjct: 156 SKTVISQVQELQIILSEILAEGMHLSETFQVAAIIEKLPPAWKDFKSYLKHKQKEMNIEG 215

Query: 182 LGSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMVXXXXXXXXXXXXXXXXRKFQGNKSKAP 361
           L    +IE+  R+ E+        +  +  N V                +K  G K    
Sbjct: 216 LVVKLRIEEDNRNAERI-----GAISMAKANFV---------EHGPKKKKKKLGPKGGIS 261

Query: 362 NKKSKL--TCWKCGKAGHFKKDCRSGK 436
            K++K    C+ C K GH   DCR  K
Sbjct: 262 KKQTKFQGKCYNCDKMGHKASDCRLPK 288


>gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
          Length = 1691

 Score =  120 bits (301), Expect(2) = 6e-41
 Identities = 58/129 (44%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
 Frame = +3

Query: 483 IPETNQDDDVS-WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSL 659
           I + N  ++V  WW DSGA  HVC D  WFK +   E+   + +G+  T  + G G V L
Sbjct: 298 ITDINMVENVDGWWADSGANRHVCYDKDWFKKYTHFEEPKTIMLGDSHTTQVLGTGDVEL 357

Query: 660 VFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGY-LNG 836
            FTSG  L+L +VLY P +RK L+SS +LN  G+KQ+ ES++Y++ + G FVG GY  +G
Sbjct: 358 CFTSGRVLTLKDVLYTPSMRKKLMSSFLLNKAGFKQIIESNQYVIVKKGIFVGKGYACDG 417

Query: 837 MFKLNLDIS 863
           MFKLN++++
Sbjct: 418 MFKLNVEMN 426



 Score = 74.7 bits (182), Expect(2) = 6e-41
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
 Frame = +2

Query: 2   SRLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVE 181
           ++ V++Q  + + I+G+    ++K+ + + V  I+DKLPPSWK+F+ T++HK++E +L  
Sbjct: 121 NKSVVDQAQDFIMIVGELRSEEVKIGDNLIVCGIVDKLPPSWKEFQKTMRHKQKETSLET 180

Query: 182 LGSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV---XXXXXXXXXXXXXXXXRKFQGNKS 352
           L    ++E+  R  +     +   +  + VN++                   +KF+ N  
Sbjct: 181 LIMKIRMEEEARGQDALLQTEENNIT-TKVNLITSNNATPESHKNTSLKPKKKKFKKNNG 239

Query: 353 KAPNK-------------KSKLTCWKCGKAGHFKKDCRSGKSG 442
           + P K             + K  C+ CGK+GH  + CR  K G
Sbjct: 240 RPPKKNNGENIQAQNQQVQDKGPCFVCGKSGHIARFCRFRKRG 282


>ref|XP_006403332.1| hypothetical protein EUTSA_v10003415mg [Eutrema salsugineum]
           gi|557104445|gb|ESQ44785.1| hypothetical protein
           EUTSA_v10003415mg [Eutrema salsugineum]
          Length = 268

 Score =  123 bits (309), Expect(2) = 6e-41
 Identities = 70/136 (51%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
 Frame = +2

Query: 11  VMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVELGS 190
           VMEQYNELLRIL QF Q+++K+DE ISVSSIIDK PPSWK+FK+ LKHKKEEL+LV+LGS
Sbjct: 82  VMEQYNELLRILRQFAQHNIKIDESISVSSIIDKFPPSWKNFKHMLKHKKEELSLVQLGS 141

Query: 191 HFQI-EQSIRDMEKFYVGDTKTVVGSSVNMVXXXXXXXXXXXXXXXXRKFQGNKSKAPNK 367
           H Q+   SI  ME+   G++K   G                      R F  N     NK
Sbjct: 142 HLQVGTSSINMMEE--NGNSKKNKGKK--------------------RSFNNNTYDGSNK 179

Query: 368 KSKLTCWKCGKAGHFK 415
           + K  CW C K GHFK
Sbjct: 180 RLKSVCWICNKPGHFK 195



 Score = 71.6 bits (174), Expect(2) = 6e-41
 Identities = 28/44 (63%), Positives = 36/44 (81%)
 Frame = +3

Query: 510 VSWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKG 641
           +SWW+DSGAT HVCKD  WFK ++P++DGS+L MGN +T PI G
Sbjct: 196 LSWWIDSGATTHVCKDHGWFKSYEPVQDGSVLHMGNESTAPILG 239


>emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
          Length = 1316

 Score =  114 bits (285), Expect(2) = 2e-39
 Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
 Frame = +3

Query: 516 WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSN 695
           WWVD+GAT H+C +   F  +KP+E    L MGN ++  I+G G V L  TSG  L+L++
Sbjct: 463 WWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKELTLND 522

Query: 696 VLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGYL-NGMFKLNL 854
           VL+VP I KNLVS  +L+  G+K VF SDK++L+++  FVG GYL +G+FK+N+
Sbjct: 523 VLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 576



 Score = 76.3 bits (186), Expect(2) = 2e-39
 Identities = 47/145 (32%), Positives = 69/145 (47%)
 Frame = +2

Query: 2   SRLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVE 181
           S+ V+ Q  EL  IL +     M   +   V+++I+KLPP WKDFKN LKHK++E+ L E
Sbjct: 325 SKTVISQVQELQVILHEIHSEGMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEE 384

Query: 182 LGSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMVXXXXXXXXXXXXXXXXRKFQGNKSKAP 361
           L    +IE+  R  EK         + +  N++                +  + N +   
Sbjct: 385 LIVRLRIEEDNRKSEK----KGNNSMEAKANVIEQGPKTNKKRKHGDQNQNQESNVA--- 437

Query: 362 NKKSKLTCWKCGKAGHFKKDCRSGK 436
            KK K  C+ CGK GH   D R+ K
Sbjct: 438 -KKFKGKCYNCGKTGHKSNDYRNTK 461


>ref|XP_004233808.1| PREDICTED: uncharacterized protein LOC101263787 [Solanum
            lycopersicum]
          Length = 2703

 Score =  116 bits (291), Expect(2) = 7e-39
 Identities = 57/119 (47%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
 Frame = +3

Query: 504  DDVSWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSL 683
            D V WW+D+GAT H+  +   F  ++ +    +L MGN ++  + G GTV L FTS   +
Sbjct: 1042 DQVEWWIDTGATRHISGNRNSFTTYELVGGDKVLHMGNSSSAKVVGKGTVELKFTSEKMV 1101

Query: 684  SLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
            +L +VL+VP IRKNLVS  +L+  G+K +FE+DK+ILS+ G FVG GY  NGMFKLN++
Sbjct: 1102 TLIDVLHVPDIRKNLVSGTLLSKHGFKMIFEADKFILSKQGMFVGNGYATNGMFKLNIE 1160



 Score = 71.6 bits (174), Expect(2) = 7e-39
 Identities = 43/137 (31%), Positives = 70/137 (51%)
 Frame = +2

Query: 74   MDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVELGSHFQIEQSIRDMEKFYVGDTKT 253
            +DE   V +I+ KLPPSWK++++ L HKKE+LTL +L  H QIEQ  R  +   + +   
Sbjct: 899  LDENFHVGAIVSKLPPSWKEYRSKLLHKKEDLTLEQLLQHLQIEQETRYRDNNILREPI- 957

Query: 254  VVGSSVNMVXXXXXXXXXXXXXXXXRKFQGNKSKAPNKKSKLTCWKCGKAGHFKKDCRSG 433
                  ++V                +K +  K    N KS + C+ C K GH+ +DC+  
Sbjct: 958  ---MKAHVVEEKIKKEPANNKFLKAKKSKNFKRTNSNSKS-IKCYHCHKIGHYARDCKIL 1013

Query: 434  KSGGKGKNEDGSSGSKD 484
            K+  + K E  ++ +K+
Sbjct: 1014 KA--EKKKEKANNNTKN 1028


>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1038

 Score =  111 bits (278), Expect(2) = 5e-38
 Identities = 57/118 (48%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = +3

Query: 501 DDDVSWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNS 680
           ++   W +D+GA+ H C + +   D++   DG  + MGN AT  + G G V L  TSG +
Sbjct: 330 ENKTDWILDTGASRHFCTNRELLHDYEDTVDGECVFMGNSATAGVIGKGKVILKLTSGKT 389

Query: 681 LSLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGYL-NGMFKLN 851
           LSLSNVLYVP +R+NLVS  +LN  G K V E DK +L+++G+FVG GYL NG+F LN
Sbjct: 390 LSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGNFVGKGYLSNGLFVLN 447



 Score = 73.9 bits (180), Expect(2) = 5e-38
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
 Frame = +2

Query: 11  VMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVELGS 190
           V+EQ +E   ++       MKM E +  + +++K PPSW D++N LKHKK++L L EL S
Sbjct: 156 VVEQIHEYENLVTNVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLHELIS 215

Query: 191 HFQIEQSIRDMEKFYVGDTKTVVGSSV--NMVXXXXXXXXXXXXXXXXRKFQGNKSKAPN 364
           H + E++ R  +K    +  +V  + V  + V                 K Q   +    
Sbjct: 216 HMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQI 275

Query: 365 KKSKLTCWKCGKAGHFKKDCRSGK 436
           KK KL C+ C K GH    C   K
Sbjct: 276 KKKKLVCYVCRKEGHKSYQCNQRK 299


>gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1453

 Score =  112 bits (280), Expect(2) = 2e-37
 Identities = 61/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
 Frame = +3

Query: 414 RRTAGLERVEEKGKTRMVQVDPRIPETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 593
           R++A +   E  G +   ++ P +       D  WWVD+GA  HVC D+  F  ++ +E 
Sbjct: 418 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VER 474

Query: 594 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 773
           GS L MGN +   + G+GTV L FTSG ++ L NV +VP I+KNLVS  +L   G++ VF
Sbjct: 475 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 534

Query: 774 ESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
           ES+K ++S++G+FVG GY   G+F+ +L+
Sbjct: 535 ESNKCVVSKYGTFVGKGYDSGGLFRFSLN 563



 Score = 71.2 bits (173), Expect(2) = 2e-37
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
 Frame = +2

Query: 5   RLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVEL 184
           R V+EQ +E+  +  +    + ++ +      II KLPPSW DF  +LKHK++E ++ +L
Sbjct: 273 RSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDL 332

Query: 185 GSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV---XXXXXXXXXXXXXXXXRKFQGNKSK 355
                +E+  R  +   V   K   GSS NMV                    K   N  K
Sbjct: 333 IGSLGVEEKARAKD---VRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKK 389

Query: 356 APNKKSKLTCWKCGKAGHFKKDCRSGK 436
               K+K  C+ CGK+GH+ KDC   K
Sbjct: 390 KGKGKAKGDCFVCGKSGHWAKDCPERK 416


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1413

 Score =  112 bits (279), Expect(2) = 2e-37
 Identities = 61/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
 Frame = +3

Query: 414 RRTAGLERVEEKGKTRMVQVDPRIPETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 593
           R++A +   E  G +   ++ PR+       D  WWVD+GA  HVC D+  F  ++ +  
Sbjct: 378 RKSANMIISEGGGTSGYGKILPRVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 434

Query: 594 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 773
           GS L MGN +   + G+GTV L FTSG ++ L NV +VP I+KNLVS  +L   G++ VF
Sbjct: 435 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 494

Query: 774 ESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
           ES+K ++S++G+FVG GY   G+F+ +L+
Sbjct: 495 ESNKCVVSKYGTFVGKGYDSGGLFRFSLN 523



 Score = 71.6 bits (174), Expect(2) = 2e-37
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
 Frame = +2

Query: 5   RLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVEL 184
           R V+EQ +E+  +  +    + ++ +      II KLPPSW DF  +LKHK++E ++ +L
Sbjct: 233 RSVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFSVPDL 292

Query: 185 GSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV---XXXXXXXXXXXXXXXXRKFQGNKSK 355
                +E+  R  +   V   K   GSS NMV                    K   N  K
Sbjct: 293 IGSLGVEEKARAKD---VRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKK 349

Query: 356 APNKKSKLTCWKCGKAGHFKKDCRSGK 436
               K+K  C+ CGK+GH+ KDC   K
Sbjct: 350 KSKGKAKGDCFVCGKSGHWAKDCPERK 376


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score =  112 bits (279), Expect(2) = 2e-37
 Identities = 61/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
 Frame = +3

Query: 414 RRTAGLERVEEKGKTRMVQVDPRIPETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 593
           R++A +   E  G +   ++ PR+       D  WWVD+GA  HVC D+  F  ++ +  
Sbjct: 359 RKSANMIISEGGGTSGYGKILPRVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 415

Query: 594 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 773
           GS L MGN +   + G+GTV L FTSG ++ L NV +VP I+KNLVS  +L   G++ VF
Sbjct: 416 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 475

Query: 774 ESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
           ES+K ++S++G+FVG GY   G+F+ +L+
Sbjct: 476 ESNKCVVSKYGTFVGKGYDSGGLFRFSLN 504



 Score = 71.6 bits (174), Expect(2) = 2e-37
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
 Frame = +2

Query: 5   RLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVEL 184
           R V+EQ +E+  +  +    + ++ +      II KLPPSW DF  +LKHK++E ++ +L
Sbjct: 214 RSVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFSVPDL 273

Query: 185 GSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV---XXXXXXXXXXXXXXXXRKFQGNKSK 355
                +E+  R  +   V   K   GSS NMV                    K   N  K
Sbjct: 274 IGSLGVEEKARAKD---VRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKK 330

Query: 356 APNKKSKLTCWKCGKAGHFKKDCRSGK 436
               K+K  C+ CGK+GH+ KDC   K
Sbjct: 331 KSKGKAKGDCFVCGKSGHWAKDCPERK 357


>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1303

 Score =  110 bits (274), Expect(2) = 7e-37
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
 Frame = +3

Query: 414 RRTAGLERVEEKGKTRMVQVDPRIPETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 593
           R++A +   E  G +   ++ P +       D  WWVD+GA  HVC D+  F  ++ +  
Sbjct: 378 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 434

Query: 594 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 773
           GS L MGN +   + G+GTV L FTSG ++ L NV +VP I+KNLVS  +L   G++ VF
Sbjct: 435 GSSLLMGNESLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 494

Query: 774 ESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
           ES+K ++S++G+FVG GY   G+F+ +L+
Sbjct: 495 ESNKCVVSKYGTFVGKGYDSGGLFRFSLN 523



 Score = 71.6 bits (174), Expect(2) = 7e-37
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
 Frame = +2

Query: 5   RLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVEL 184
           R V+EQ +E+  +  +    + ++ +      II KLPPSW DF  +LKHK++E ++ +L
Sbjct: 233 RSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDL 292

Query: 185 GSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV---XXXXXXXXXXXXXXXXRKFQGNKSK 355
                +E+  R  +   V   K   GSS NMV                    K   N  K
Sbjct: 293 IGSLGVEEKARAKD---VRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKK 349

Query: 356 APNKKSKLTCWKCGKAGHFKKDCRSGK 436
               K+K  C+ CGK+GH+ KDC   K
Sbjct: 350 KSKGKAKGDCFVCGKSGHWAKDCPERK 376


>gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1298

 Score =  109 bits (273), Expect(2) = 9e-37
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
 Frame = +3

Query: 414 RRTAGLERVEEKGKTRMVQVDPRIPETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 593
           R++A +   E  G +   ++ P +       D  WWVD+GA  HVC D+  F  ++ +  
Sbjct: 378 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 434

Query: 594 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 773
           GS L MGN +   + G+GTV L FTSG ++ L NV +VP I+KNLVS  +L   G++ VF
Sbjct: 435 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 494

Query: 774 ESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
           ES+K ++S++G+FVG GY   G+F+ +L+
Sbjct: 495 ESNKCVVSKYGTFVGKGYDSGGLFRFSLN 523



 Score = 71.6 bits (174), Expect(2) = 9e-37
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
 Frame = +2

Query: 5   RLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVEL 184
           R V+EQ +E+  +  +    + ++ +      II KLPPSW DF  +LKHK++E ++ +L
Sbjct: 233 RSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDL 292

Query: 185 GSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV---XXXXXXXXXXXXXXXXRKFQGNKSK 355
                +E+  R  +   V   K   GSS NMV                    K   N  K
Sbjct: 293 IGSLGVEEKARAKD---VRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKK 349

Query: 356 APNKKSKLTCWKCGKAGHFKKDCRSGK 436
               K+K  C+ CGK+GH+ KDC   K
Sbjct: 350 KSKGKAKGDCFVCGKSGHWAKDCPERK 376


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  109 bits (273), Expect(2) = 9e-37
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
 Frame = +3

Query: 414 RRTAGLERVEEKGKTRMVQVDPRIPETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 593
           R++A +   E  G +   ++ P +       D  WWVD+GA  HVC D+  F  ++ +  
Sbjct: 233 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 289

Query: 594 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 773
           GS L MGN +   + G+GTV L FTSG ++ L NV +VP I+KNLVS  +L   G++ VF
Sbjct: 290 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 349

Query: 774 ESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
           ES+K ++S++G+FVG GY   G+F+ +L+
Sbjct: 350 ESNKCVVSKYGTFVGKGYDSGGLFRFSLN 378



 Score = 71.6 bits (174), Expect(2) = 9e-37
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
 Frame = +2

Query: 5   RLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVEL 184
           R V+EQ +E+  +  +    + ++ +      II KLPPSW DF  +LKHK++E ++ +L
Sbjct: 88  RSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDL 147

Query: 185 GSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV---XXXXXXXXXXXXXXXXRKFQGNKSK 355
                +E+  R  +   V   K   GSS NMV                    K   N  K
Sbjct: 148 IGSLGVEEKARAKD---VRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKK 204

Query: 356 APNKKSKLTCWKCGKAGHFKKDCRSGK 436
               K+K  C+ CGK+GH+ KDC   K
Sbjct: 205 KSKGKAKGDCFVCGKSGHWAKDCPERK 231


>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  109 bits (273), Expect(2) = 2e-36
 Identities = 54/115 (46%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
 Frame = +3

Query: 516 WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSN 695
           WWVD+GA  HVC D+  F  ++ +  GS L MGN +   + G+GTV L FTSG  + L N
Sbjct: 266 WWVDTGANIHVCADISLFSSYQ-VGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKIVQLKN 324

Query: 696 VLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
           V +VP I+KNLVS  +L   G++ VFES+K ++S++G+F+G GY   G+F+ +LD
Sbjct: 325 VQHVPSIKKNLVSGSLLCRDGFRLVFESNKCVVSKYGTFIGKGYDSGGLFRFSLD 379



 Score = 70.5 bits (171), Expect(2) = 2e-36
 Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 7/163 (4%)
 Frame = +2

Query: 5   RLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVEL 184
           R V+EQ +E+  ++ +      ++ +      II KLPPSW DF  +LKHK++E ++ +L
Sbjct: 88  RSVVEQAHEIQMLVKELENNHCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVTDL 147

Query: 185 GSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV----XXXXXXXXXXXXXXXXRKFQGNKS 352
                IE+  R  +       K   GSS N+V                     K   N  
Sbjct: 148 IGSLGIEEKARAKDN---RGKKIEGGSSANLVQKKNPHASHNNNKKVKPDVKPKATTNFK 204

Query: 353 KAPNKKSKLTCWKCGKAGHFKKDC---RSGKSGGKGKNEDGSS 472
           K    K+K  C+ CGK GH+ KDC   +  KS     +EDG +
Sbjct: 205 KKGKGKAKGDCFVCGKPGHWAKDCPERKDKKSANMVISEDGGT 247


>gb|AAM95676.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1138

 Score =  110 bits (275), Expect(2) = 2e-36
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
 Frame = +3

Query: 414 RRTAGLERVEEKGKTRMVQVDPRIPETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 593
           R++A +   E  G +   ++ P +       D  WWVD+GA  HVC D+  F  ++ +  
Sbjct: 233 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VRR 289

Query: 594 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 773
           GS L MGN +   + G+GTV L FTSG ++ L NV +VP I+KNLVS  +L   G++ VF
Sbjct: 290 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 349

Query: 774 ESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
           ES+K ++S++G+FVG GY   G+F+ +L+
Sbjct: 350 ESNKCVVSKYGTFVGKGYDSGGLFRFSLN 378



 Score = 69.7 bits (169), Expect(2) = 2e-36
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
 Frame = +2

Query: 5   RLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVEL 184
           R V+EQ +E+  +  +    + ++ +      II KLPPSW DF  +LKH ++E ++ +L
Sbjct: 88  RSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHNRQEFSVPDL 147

Query: 185 GSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV---XXXXXXXXXXXXXXXXRKFQGNKSK 355
                +E+  R  +   V   K   GSS NMV                    K   N  K
Sbjct: 148 IGSLGVEEKARAKD---VQGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKK 204

Query: 356 APNKKSKLTCWKCGKAGHFKKDCRSGK 436
               K+K  C+ CGK+GH+ KDC   K
Sbjct: 205 KSKGKAKGDCFVCGKSGHWAKDCPERK 231


>gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708705|gb|ABF96500.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1240

 Score =  109 bits (273), Expect(2) = 3e-36
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
 Frame = +3

Query: 414 RRTAGLERVEEKGKTRMVQVDPRIPETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 593
           R++A +   E  G +   ++ P +       D  WWVD+GA  HVC D+  F  ++ +  
Sbjct: 233 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISQFSSYQ-VGR 289

Query: 594 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 773
           GS L MGN +   + G+GTV L FTSG ++ L NV +VP I+KNLVS  +L   G++ VF
Sbjct: 290 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 349

Query: 774 ESDKYILSRHGSFVGFGY-LNGMFKLNLD 857
           ES+K ++S++G+FVG GY   G+F+ +L+
Sbjct: 350 ESNKCVVSKYGTFVGKGYDSGGLFRFSLN 378



 Score = 70.1 bits (170), Expect(2) = 3e-36
 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
 Frame = +2

Query: 5   RLVMEQYNELLRILGQFTQYDMKMDECISVSSIIDKLPPSWKDFKNTLKHKKEELTLVEL 184
           R V+EQ  E+  +  +    + ++ +      II KLPPSW DF  +LKHK++E ++ +L
Sbjct: 88  RSVVEQAYEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDL 147

Query: 185 GSHFQIEQSIRDMEKFYVGDTKTVVGSSVNMV---XXXXXXXXXXXXXXXXRKFQGNKSK 355
                +E+  R  +   V   K   GSS NMV                    K   N  K
Sbjct: 148 IGSLGVEEKARAKD---VRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKK 204

Query: 356 APNKKSKLTCWKCGKAGHFKKDCRSGK 436
               K+K  C+ CGK+GH+ KDC   K
Sbjct: 205 KGKGKAKGDCFVCGKSGHWAKDCPERK 231