BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00037657
         (1874 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   416   e-113
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   384   e-104
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   378   e-102
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   377   e-101
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]             373   e-100
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   363   1e-97
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664...   362   4e-97
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               355   3e-95
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       355   4e-95
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   346   2e-92
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   344   9e-92
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   342   3e-91
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   338   5e-90
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   337   1e-89
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   336   2e-89
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           336   2e-89
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268...   335   4e-89
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   333   1e-88
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                331   8e-88
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   330   1e-87

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  416 bits (1068), Expect = e-113
 Identities = 231/622 (37%), Positives = 343/622 (55%), Gaps = 10/622 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF+   +   +N  +V+L+PK  H + V +FRPIAC  V+YKII+K+LTNRM  ++ +++
Sbjct: 484  FFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVV 543

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
            + AQ+ FI GR I DN  LA ELI+ Y R   ++ R ++K+D+RKAYD + W FL  +L+
Sbjct: 544  NEAQSGFIPGRHIADNILLASELIRGYTRKH-MSPRCIMKVDIRKAYDSVEWSFLETLLY 602

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
               F S F+ WIM CV++ ++S+ +NG      + ++GLRQGDPMSP LF LCM+YLSR 
Sbjct: 603  EFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRC 662

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L     +  F  HPKC+  +ITHL FADDLL+F R D  S+  +  A ++F+  SGLA +
Sbjct: 663  LEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAAS 722

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              KS+++  GV     +E+ +      G LP +YLG+PL SK LT     PL+  I+N  
Sbjct: 723  HEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRA 782

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-----GSSY 1066
              W    LS AGRL+LI+S+L  ++ YW    PL   VI  + K+ RKFLW      +  
Sbjct: 783  QTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKK 842

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
             PV+W T+  P+  GG  + ++  WN+A   K LW I  K D LW++WIH+ Y++ QDI 
Sbjct: 843  APVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDIL 902

Query: 1247 EFPSPKRDAPHITNILRIRDRLILDCGGNLNDAKALLVGWFTGKGTSEAYEHFRAKGEKK 1426
                  +    +  I++ RD L      N+ D   + +G        +AY+     GE+ 
Sbjct: 903  TVNISNQTTWILRKIVKARDHL-----SNIGDWDEICIG--DKFSMKKAYKKISENGERV 955

Query: 1427 FWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLKHSDIA--RGCVLCDTSDETHDHLFFK 1600
             W + I  +Y  PK    LW+ L  RL T+DR+    +       LC    ET  HLFF 
Sbjct: 956  RWRRLICNNYATPKSKFILWMMLHERLPTVDRISRWGVQCDLNYRLCRNDGETIQHLFFS 1015

Query: 1601 CEKSLAVWSSICSWLRCRNQMTT---IPSAIRRFQREKAGSGIIRKAKWIALGATVQYLW 1771
            C  S  VWS IC  +R  N   +   I S++    R+K G  I+     +     V  +W
Sbjct: 1016 CSYSAGVWSKICYIMRFPNSGVSHQEIISSVCGQARKKKGKLIV-----MLYTEFVYAIW 1070

Query: 1772 QARNLKYVDKKPFEASHIIKEI 1837
            + RN +    +  + + ++++I
Sbjct: 1071 KQRNKRTFTGENKDENEVLRKI 1092


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  384 bits (986), Expect = e-104
 Identities = 235/626 (37%), Positives = 333/626 (53%), Gaps = 14/626 (2%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF+ G +   LN TI++LIPK T+   + D+RPI+C NV+YK I+K+L NR+  LL + I
Sbjct: 765  FFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFI 824

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
            +P Q+AFI  R + +N  LA EL+K Y +  G++ R  +KIDL KA+D + W FL   L 
Sbjct: 825  APNQSAFISDRLLMENLLLASELVKDYHK-DGLSPRCAMKIDLSKAFDSVQWPFLLNTLA 883

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             L+    FI+WI  C+++++FS+ +NG           LRQG  +SP LF++CM+ LS +
Sbjct: 884  ALDIPEKFIHWINLCISTASFSVQVNG-----------LRQGCSLSPYLFVICMNVLSAM 932

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L        F +HP+C    +THL FADD+++F  G   S+  +    ++F A SGL I+
Sbjct: 933  LDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNIS 992

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              KS +F+  +       IL  F F  G+LPV+YLGLPL +K +T  D  PL+ +I + I
Sbjct: 993  LEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRI 1052

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-GSSYCP-- 1072
              W    LS AGRL+L+ SV+  +  +W+ A  LP   I  I ++   FLW G+   P  
Sbjct: 1053 SSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHK 1112

Query: 1073 --VSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              V+W  VC P+ EGGLGLR L   NK    K +W + +   +LW+ WI    +R   + 
Sbjct: 1113 AKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWIQNNLIR--TVA 1170

Query: 1247 EFPSPKRDAPHITNILR-IRDRL-ILDCGGNLNDAKALLV----GWFTGKGTS-EAYEHF 1405
            E  S  R   H  +IL  I + L  L C G   +    L     G F  K  S E +   
Sbjct: 1171 EALSSHRRRSHRDDILNDIEEELEKLLCRGICTEQDRSLCRSIGGQFKAKFFSPEIWHQI 1230

Query: 1406 RAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLK--HSDIARGCVLCDTSDET 1579
            R +G  K WHKAIW S   PKF+   WLA   RL T D++   +  I+  CVLC+ S E+
Sbjct: 1231 REQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISAES 1290

Query: 1580 HDHLFFKCEKSLAVWSSICSWLRCRNQMTTIPSAIRRFQREKAGSGIIRKAKWIALGATV 1759
             DHLFF C  S  +W  +   L      T  P+ +     +   SG  R        AT+
Sbjct: 1291 RDHLFFSCNFSSHIWDRLTRRLLLCRYTTNFPALLLLLSGQDF-SGTKRFLLRYVFQATI 1349

Query: 1760 QYLWQARNLKYVDKKPFEASHIIKEI 1837
              LW+ RN +     P  + HIIK I
Sbjct: 1350 HTLWRERNKRRHGDLPIPSDHIIKFI 1375


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  378 bits (971), Expect = e-102
 Identities = 222/606 (36%), Positives = 318/606 (52%), Gaps = 12/606 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FFS G +  +LN TI++L+PK  + + + DFRPI+C N  YKII K+L NR+   LH ++
Sbjct: 320  FFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIV 379

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
             P+Q+ FI GR I DN  LAQE+I  Y +  G   R    +D+ KA D + W F+   L 
Sbjct: 380  GPSQSTFIPGRRIGDNILLAQEIICDYHKADG-QPRCTFMVDMMKANDTVEWDFIIATLQ 438

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
              N  S  I WI +C++S+ FS+ +NG   GF   +RGLRQGDP+SP LF++ M+ LS  
Sbjct: 439  AFNIPSTLIGWIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLC 498

Query: 542  LHARTHAST-FIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAI 718
            +  R + S  F +H +CD  +++HL FADDLL+F  GD +S+R L DA   F + S L  
Sbjct: 499  IQRRINCSPCFRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKA 558

Query: 719  NKSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNF 898
            N S+S +FL GV       +L++  F  GT PV+YLG+PL +  L   D +PL+ +I   
Sbjct: 559  NVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETR 618

Query: 899  IHRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-----GSS 1063
            I  W    LS AGRL+LIQSVL  ++ YW   L LP  V+  I K +R FLW     G +
Sbjct: 619  IKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRA 678

Query: 1064 YCPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDI 1243
               V+W  +CLP+ EGGLG++DL  WNKAL    +WN+ + +   W  W+    L+G   
Sbjct: 679  ATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSF 738

Query: 1244 WEFPSPKRDAPHITNILRIRDRLILDCGGNLNDAKALLVGWFTGKGTSEAYEHFRAKGEK 1423
            W  P P   + +   +L+IR+   L C   +N     ++G   G+ TS  ++++   G  
Sbjct: 739  WNAPLPSICSWNWRKLLKIRE---LCCSFFVN-----IIG--DGRATSLWFDNWHPLGPL 788

Query: 1424 KFWHKAIWRSYI--PPKFSVTLWLALQGRLKTLDRLKHSDIARGCV----LCDTSDETHD 1585
                   W S I      S +  L   G   T         +R  V    L     ETH+
Sbjct: 789  TL----RWSSNIIGESGLSKSAMLTPNGFYSTSSAWNTLRPSRFIVPWYRLVWFVAETHN 844

Query: 1586 HLFFKCEKSLAVWSSICSWLRCRNQMTTIPSAIRRFQREKAGSGIIRKAKWIALGATVQY 1765
            HLFF C  S  +W+ + S       +      I        G+ +      +AL A V  
Sbjct: 845  HLFFDCAYSFGIWTHVLSKCDVSKPLLPWSDFIFWVATNWKGNSLPVVILKLALQAVVYA 904

Query: 1766 LWQARN 1783
            +W+ RN
Sbjct: 905  IWRERN 910


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  377 bits (968), Expect = e-101
 Identities = 222/620 (35%), Positives = 322/620 (51%), Gaps = 8/620 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF  G +   +N T V+LIPK        D+RPIAC + +YKII+KILT R+  ++ +++
Sbjct: 487  FFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVV 546

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
              AQ  FI  R I DN  LA ELI+ Y R   ++ R ++K+D+RKAYD + W FL  +L 
Sbjct: 547  DCAQTGFIPERHIGDNILLATELIRGYNRRH-VSPRCVIKVDIRKAYDSVEWVFLESMLK 605

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             L F S FI WIM CV + ++SI +NG        Q+GLRQGDP+SP LF L M+YLSR 
Sbjct: 606  ELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRC 665

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            +        F  HPKC+   +THL FADDLL+F R D  S+  +  A   F+  SGL  +
Sbjct: 666  MGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQAS 725

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              KS ++ GGV   E +++ +    P G+LP +YLG+PLASK L      PLI +I+   
Sbjct: 726  IEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRA 785

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW----GSSY- 1066
              W    LS AGRL+L++++L  ++ YW Q  PLP  +I  +    RKFLW     +SY 
Sbjct: 786  QGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYK 845

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
             PV+W  +  P+  GGL + ++ +WNKA   K LW I  K D LW++W++A Y++ Q+I 
Sbjct: 846  APVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIE 905

Query: 1247 EFPSPKRDAPHITNILRIRDRLILDCGGNLNDAKALLVGWFTGKGTSEAYEHFRAKGEKK 1426
                    +  +  I   R+ L    G          V         + Y+  +   E  
Sbjct: 906  NVTVSSNTSWILRKIFESRELLTRTGGWE-------AVSNHMNFSIKKTYKLLQEDYENV 958

Query: 1427 FWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLK--HSDIARGCVLCDTSDETHDHLFFK 1600
             W + I  +   PK    LWLA+  RL T +R+   + D++  C +C    ET  HLFF 
Sbjct: 959  VWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCKMCGNEIETIQHLFFN 1018

Query: 1601 CEKSLAVWSSICSWLRCRNQMTTIPSAIRRFQREKAGSGIIRKAKWIAL-GATVQYLWQA 1777
            C  S  +W  +  +L  + Q      A +    +KA S   R   ++ +   +V  +W  
Sbjct: 1019 CIYSKEIWGKVLLYLNLQPQADA--QAKKELAIKKARSTKDRNKLYVMMFTESVYAIWLL 1076

Query: 1778 RNLKYVDKKPFEASHIIKEI 1837
            RN K         +  +K I
Sbjct: 1077 RNAKVFRGIEINQNQAVKSI 1096


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score =  373 bits (958), Expect = e-100
 Identities = 214/616 (34%), Positives = 331/616 (53%), Gaps = 12/616 (1%)
 Frame = +2

Query: 17   LIFCKLNHTIVSLIPKTTHDSGVF--DFRPIACTNVVYKIITKILTNRMSPLLHKLISPA 190
            ++F   ++  +  +P  +  +G F   +RP++C NV+YKII+KI+ NR+  +L K I+  
Sbjct: 29   VVFMLTSYICIHFLPLLSSPTGHFISHYRPLSCCNVIYKIISKIIANRLKMVLPKFIAGN 88

Query: 191  QAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLHGLN 370
            Q AF+K R + +N  LA EL+K Y + S +++R  +KID+ KA++ + W F+R +L  ++
Sbjct: 89   QTAFVKDRLLIENLLLATELVKDYHKES-VSSRCAIKIDISKAFNSVQWSFIRNILLSMD 147

Query: 371  FHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRLLHA 550
            F   F++WIM C+++++FS+ +NG   GF + +RGLRQG  +SP LF++ MD LS+LL  
Sbjct: 148  FPMEFVHWIMLCISTASFSVQVNGELVGFFQSKRGLRQGCSLSPYLFVMSMDVLSKLLDQ 207

Query: 551  RTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAINKSK 730
               A  F +H +C    +THL+FADDL++   G   S+  + +  + F   SGL I+  K
Sbjct: 208  AASAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFAKFSGLKISMEK 267

Query: 731  SHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFIHRW 910
            S ++L GV      EI   + F  G LPV+YLGLPL +K LT  DY+PL+  I   I  W
Sbjct: 268  STIYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLLEHIKKKIGTW 327

Query: 911  SYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-GSSYCP----V 1075
            +   LS AGRL LI SVL  +  +WL A  LP   I  I K+   FLW G    P    V
Sbjct: 328  TTRYLSYAGRLNLITSVLWSICNFWLAAFRLPRECIREIDKICSAFLWSGPDLNPRKTRV 387

Query: 1076 SWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIWEFP 1255
             W  VC P++EGGLGLR L   N+    K +W I + T++LW++WI    L+    W   
Sbjct: 388  CWGDVCKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRWIEQYLLKHDTFWSVQ 447

Query: 1256 SPKRDAPHITNILRIRDRLILDCGGNLNDAKALLVGWFTGKGTSEAYEHFRAKGEKKFWH 1435
            +        TN+  +  R         ND       +     T + +   R       WH
Sbjct: 448  T-------TTNMDSVLWR-------GRNDE------YMPKFSTRDTWNQTRNTSTPVTWH 487

Query: 1436 KAIWRSYIPPKFSVTLWLALQGRLKTLDRLK--HSDIARGCVLCDTSDETHDHLFFKCEK 1609
              IW ++  PKFS   WLA+Q RL T D++   +  ++  CVLC+ + ET +HLFF C  
Sbjct: 488  MGIWFAHATPKFSFCAWLAVQNRLSTGDKMLQWNRRLSPTCVLCNNNIETRNHLFFSCCY 547

Query: 1610 SLAVWSSICSWL---RCRNQMTTIPSAIRRFQREKAGSGIIRKAKWIALGATVQYLWQAR 1780
            +  +W ++   +   +     +TI +++    R +  S + R        AT+  +W  R
Sbjct: 548  TAEIWENLAKNIYKAKFSTNWSTILTSVSTTWRNRTESFLAR----YIFQATIHTIWHER 603

Query: 1781 NLKYVDKKPFEASHII 1828
            N +   ++   A+H+I
Sbjct: 604  NGRRHGERSNSATHLI 619


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  363 bits (932), Expect = 1e-97
 Identities = 227/702 (32%), Positives = 346/702 (49%), Gaps = 90/702 (12%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF  G +  + N T V+++PK  +   + +FRPI+C N +YK+I+K+L  R+  +L   I
Sbjct: 492  FFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWI 551

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
            SP+Q+AF+KGR +T+N  LA EL++ + + + I++RG++K+DLRKA+D + WGF+ E L 
Sbjct: 552  SPSQSAFVKGRLLTENVLLATELVQGFGQAN-ISSRGVLKVDLRKAFDSVGWGFIIETLK 610

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
              N    F+ WI  C+TS++FSI ++G   G+ +G +GLRQGDP+SPSLF++ M+ LSRL
Sbjct: 611  AANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRL 670

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L  +    +  +HPK     I+ LAFADDL++F  G   S+R ++  LE F   SGL +N
Sbjct: 671  LENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMN 730

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              KS V+  G+   +K++ L  FGF  GT P +YLGLPL  + L   DY+ LI +I+   
Sbjct: 731  TEKSAVYTAGLEDTDKEDTLA-FGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARF 789

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLWGSSYC---- 1069
            + W+   LS AGRL+LI SV+     +WL +  LP   +  I ++  +FLWG+       
Sbjct: 790  NHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGD 849

Query: 1070 -PVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTL-------------------------W 1171
              VSW+  CLP+ EGGLGLR+   WNK L+ + +                         W
Sbjct: 850  IKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFW 909

Query: 1172 NIHAKTDTLWIKW--------IHAEYLRGQ-----------DIWEFPSPKRDA-----PH 1279
            N  A +   WI W        +   +LRG            D W    P  +A     P 
Sbjct: 910  NAEAASHHSWI-WKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQ 968

Query: 1280 ITNI-------------------LRIRDRLILDCGGNLNDAKAL-------LVGWFTGKG 1381
            +T I                    R R+  + +    L ++ A           W+    
Sbjct: 969  LTGIHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGS 1028

Query: 1382 TSEAY------EHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLKHSDIA 1543
            +S ++      E  R +   K W  A+W     PK++   W+A   RL    R  H    
Sbjct: 1029 SSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTN 1088

Query: 1544 RG--CVLCDTSDETHDHLFFKCEKSLAVWSSICSWLRCRNQMTTIPSAIRRFQREKAG-- 1711
            R   C +C    ET DHLF  C     +W  + +    R+QM      I  +     G  
Sbjct: 1089 RPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLARFG-RSQMFREWKDIIEWMLSNQGSF 1147

Query: 1712 SGIIRKAKWIALGATVQYLWQARNLKYVDKKPFEASHIIKEI 1837
            SG ++K   +A+   + ++W+ RN +         + I K+I
Sbjct: 1148 SGTLKK---LAVQTAIFHIWKERNSRLHSAMSASHTAIFKQI 1186


>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
          Length = 939

 Score =  362 bits (928), Expect = 4e-97
 Identities = 202/538 (37%), Positives = 299/538 (55%), Gaps = 7/538 (1%)
 Frame = +2

Query: 191  QAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLHGLN 370
            QAAF+ G+ + D+  LA EL++ YER  G T + M++ID++KAYD + W  L  +L  L 
Sbjct: 375  QAAFVPGQQLHDHVMLAFELLRGYERKHG-TPKCMLQIDIQKAYDTVHWDALEHILRELG 433

Query: 371  FHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRLLHA 550
            F   FI WIM  V S T+   ING     +  +RG+RQGDP+SP LF+L M+YL+R+L  
Sbjct: 434  FPDQFIKWIMIAVRSVTYVFNINGRFTRRLEARRGIRQGDPISPLLFILVMEYLNRILSQ 493

Query: 551  RTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAINKSK 730
                  F +H KC+   IT+L FADDLLLF RGD  S++++ D    F  + GL +N SK
Sbjct: 494  LDKIPNFNYHSKCEKMKITNLCFADDLLLFSRGDIGSVQIMLDKFNTFLRSMGLHVNPSK 553

Query: 731  SHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFIHRW 910
             +++ G V    K+++L + GF EG +P +YLG+PL+SK L    Y  LI +I   I  W
Sbjct: 554  CNIYCGSVDINVKEQLLLISGFKEGKMPFRYLGIPLSSKKLNIKHYQVLIDKIVGRITHW 613

Query: 911  SYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-GSS----YCPV 1075
            S   LS AGR++LIQSV+     +W+Q LPLP  VI RI  + R FLW G+S      P+
Sbjct: 614  SAGLLSYAGRVQLIQSVIFATINFWMQCLPLPKFVIMRINAICRSFLWIGNSNISRKSPI 673

Query: 1076 SWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIWEFP 1255
            +W+ VC P+  GGL + +LA+WNK    K LWN+  K+D LWIKW+H  Y+RGQ IW   
Sbjct: 674  AWEKVCSPKINGGLNIINLAIWNKISILKLLWNVCNKSDNLWIKWLHTYYIRGQSIWSMV 733

Query: 1256 SPKRDAPHITNILRIRDRLILDCGGNLNDAKALLVGWFTGKGTSEAYEHFRAKGEKKFWH 1435
              K  +  +++++++R  L+L     + D   +           + Y     + EK  W 
Sbjct: 734  LKKSHSWIMSSMMKLRP-LLLQYQSRMQDVFKM----------KKIYLALFEESEKMSWR 782

Query: 1436 KAIWRSYIPPKFSVTLWLALQGRLKTLDRLKH--SDIARGCVLCDTSDETHDHLFFKCEK 1609
              +  +   P+    LW A   RL + DRL     ++   C  C +S E+H+HLFF C +
Sbjct: 783  TLMCNNLARPRALFCLWQACHFRLASKDRLIKFGLNVDANCAFC-SSMESHEHLFFGCIE 841

Query: 1610 SLAVWSSICSWLRCRNQMTTIPSAIRRFQREKAGSGIIRKAKWIALGATVQYLWQARN 1783
               +W+++ +WL+  +  +T    +    R+  G G        A   T+ ++W  RN
Sbjct: 842  LKTIWTAVLNWLQIIHMPSTWSEELNWITRKCKGKGWRAMLLKCAFTETIYHIWAYRN 899


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  355 bits (912), Expect = 3e-95
 Identities = 187/441 (42%), Positives = 262/441 (59%), Gaps = 6/441 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF KG +   +N  I++LIPK      + D+RPI+C NV+YK+I+KI+ NR+  LL + I
Sbjct: 146  FFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFI 205

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
            +  Q+AF+K R + +N  LA EL+K Y + S I+AR  +KID+ KA+D + W FL   L 
Sbjct: 206  AENQSAFVKDRLLIENLLLATELVKDYHKDS-ISARCAIKIDISKAFDSVQWSFLTNTLV 264

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             +NF   FI+WI  C+T+++FS+ +NG   G+ + +RGLRQG  +SP LF++CMD LS++
Sbjct: 265  AMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKM 324

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L        F  HPKC    +THL+FADDL++   G   S+  + +  +EF   SGL I+
Sbjct: 325  LDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRIS 384

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              KS +++ GV P  KQEI   F F  G LPV+YLGLPL +K LT+ DY+PL+ QI   I
Sbjct: 385  LEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRI 444

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLWGSS-----Y 1066
              W++   S AGR  LI+SVL  +  +WL A  LP   I  I KL   FLW  S      
Sbjct: 445  ATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHK 504

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              +SW  VC P+ EGGLGLR+L   N     K +W I + +++LW KW+    +R + IW
Sbjct: 505  AKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIW 564

Query: 1247 EFPSPKRDAPHI-TNILRIRD 1306
                       I   IL+IRD
Sbjct: 565  SLKQSTSMGSWIWRKILKIRD 585



 Score = 71.6 bits (174), Expect = 1e-09
 Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
 Frame = +2

Query: 1382 TSEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRL----KHSDIARG 1549
            T + +   +A      WHK +W  +  PK+++  WLA+  RL T DR+        ++  
Sbjct: 687  TRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGN 746

Query: 1550 CVLCDTSDETHDHLFFKCEKSLAVWSSICSWL---RCRNQMTTIPSAIRRFQREKAGSGI 1720
            CVLC  + +T +HLFF C  +  VW+++   +   R   + + + + I    +++    +
Sbjct: 747  CVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHISTHFQDRVEGFL 806

Query: 1721 IRKAKWIALGATVQYLWQARNLKYVDKKPFEASHII 1828
             R        AT+ ++W+ RN +  D  P   + +I
Sbjct: 807  TR----YIFQATIYHVWRERNGRRHDAAPNTPATVI 838


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  355 bits (911), Expect = 4e-95
 Identities = 179/439 (40%), Positives = 260/439 (59%), Gaps = 5/439 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FFS G +  + N T + LIPK  + +   DFRPI+C N +YK+I ++LT+R+  LL  +I
Sbjct: 493  FFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVI 552

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
            S AQ+AF+ GRS+ +N  LA +L+  Y   S I+ RGM+K+DL+KA+D + W F+   L 
Sbjct: 553  SSAQSAFLPGRSLAENVLLATDLVHGYN-WSNISPRGMLKVDLKKAFDSVRWEFVIAALR 611

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             L     FI WI  C+++ TF+++INGG  GF +  +GLRQGDP+SP LF+L M+  S L
Sbjct: 612  ALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNL 671

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            LH+R  +    +HPK     I+HL FADD+++F  G   S+  + + L++F + SGL +N
Sbjct: 672  LHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVN 731

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
            K KSH++L G+   E       +GFP GTLP++YLGLPL ++ L   +Y PL+ +I+   
Sbjct: 732  KDKSHLYLAGLNQLE-SNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARF 790

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLWGSSY----- 1066
              W    LS AGR++LI SV+ G   +W+    LP   I RI  L  +FLW  +      
Sbjct: 791  RSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKG 850

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              VSW  +CLP+ EGGLGLR L  WNK L  + +W +    D+LW  W H  +L     W
Sbjct: 851  IKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFW 910

Query: 1247 EFPSPKRDAPHITNILRIR 1303
                 + D+     +L +R
Sbjct: 911  AVEGGQSDSWTWKRLLSLR 929



 Score = 60.1 bits (144), Expect = 3e-06
 Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
 Frame = +2

Query: 1373 GKGTSEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLK-----HSD 1537
            G   ++ +E  R K   K W  +IW     PK++  +W++   RL T  RL       SD
Sbjct: 1032 GFSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSD 1091

Query: 1538 IARGCVLCDTSDETHDHLFFKCEKSLAVW----SSICSWLRCRNQMTTIPSAIRRFQREK 1705
                CVLC  + E+ DHL   CE S  VW      IC   R  +  + + S +R  Q   
Sbjct: 1092 ---ACVLCSFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSWSELLSWVR--QSSP 1146

Query: 1706 AGSGIIRKAKWIALGATVQYLWQARN 1783
                ++RK   I     V  LW+ RN
Sbjct: 1147 EAPPLLRK---IVSQVVVYNLWRQRN 1169


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  346 bits (888), Expect = 2e-92
 Identities = 179/421 (42%), Positives = 254/421 (60%), Gaps = 5/421 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF+KG +   +N TI++LIPK T    + D+RPI+C NV+YK+I+KI+ NR+  +L K I
Sbjct: 499  FFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFI 558

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
            +  Q+AF+K R + +N  LA EL+K Y + + I+ R  +KID+ KA+D + W FL  V  
Sbjct: 559  AGNQSAFVKDRLLIENLLLATELVKDYHKDT-ISTRCAIKIDISKAFDSVQWPFLINVFT 617

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             L F   FI+WI  C+T+++FS+ +NG   G+ +  RGLRQG  +SP LF++CMD LS++
Sbjct: 618  ILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKM 677

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L     A  F +HPKC T  +THL+FADDL++   G   S+  +    +EF   SGL I+
Sbjct: 678  LDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRIS 737

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              KS V+L G+    + E+ + F F  G LPV+YLGLPL +K L+T D  PL+ Q+   I
Sbjct: 738  LEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRI 797

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-----GSSY 1066
              W+   LS AGRL LI SVL  +  +WL A  LP   I  + K+   FLW      S+ 
Sbjct: 798  GSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNK 857

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              +SW  VC P+ EGGLGLR L   N     K +W I + +++LW+KW+    LR    W
Sbjct: 858  AKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFW 917

Query: 1247 E 1249
            E
Sbjct: 918  E 918



 Score = 80.9 bits (198), Expect = 2e-12
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
 Frame = +2

Query: 1382 TSEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLKH--SDIARGCV 1555
            T + + H R+   +  WHK IW S+  PK+S   WLA  GRL T DR+ +  + IA  C+
Sbjct: 1040 TRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCI 1099

Query: 1556 LCDTSDETHDHLFFKCEKSLAVWSSICSWL---RCRNQMTTIPSAIRRFQREKAGSGIIR 1726
             C  + ET DHLFF C  +  +W  +   +   +  +   +I  AI   Q  +    + R
Sbjct: 1100 FCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSIIEAITNSQHHRVEWFLRR 1159

Query: 1727 KAKWIALGATVQYLWQARNLKYVDKKPFEASHIIKEIKLDVYRVLYSL 1870
                    AT+  +W+ RN +   + P  AS ++  I   +   L S+
Sbjct: 1160 ----YVFQATIYIVWRERNGRRHGEPPNTASQLVGWIDKQIRNQLSSI 1203


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  344 bits (882), Expect = 9e-92
 Identities = 180/420 (42%), Positives = 250/420 (59%), Gaps = 5/420 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF+KG +   +N TI++LIPK      + D+RPI+C NV+YK I+KIL NR+  +L K I
Sbjct: 220  FFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFI 279

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
               Q+AF+K R + +N  LA EL+K Y + S I+ R  +KID+ KA+D + W FL  VL 
Sbjct: 280  VGNQSAFVKDRLLIENVLLATELVKDYHKDS-ISTRCAMKIDISKAFDSLQWSFLTHVLA 338

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             +NF   FI+WI  C+++++FSI +NG   G+ R  RGLRQG  +SP LF++ MD LSR+
Sbjct: 339  AMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRM 398

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L     A  F +HP+C T  +THL FADDL++   G   S+  +   L +F A  GL I 
Sbjct: 399  LDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKIC 458

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              K+ ++L GV  + +Q +   + F  G LPV+YLGLPL +K LTT DY+PLI QI   I
Sbjct: 459  MEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRI 518

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLWGS-----SY 1066
              W+   LS AGRL LI SVL  +  +W+ A  LP   IN I ++    LW         
Sbjct: 519  GMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKK 578

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              VSW  +C P+KEGGLGL+ L   NK    K +W + +  D+LW+KW     L+ +  W
Sbjct: 579  AKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFW 638



 Score = 88.2 bits (217), Expect = 1e-14
 Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
 Frame = +2

Query: 1382 TSEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLK--HSDIARGCV 1555
            T + + H R    ++ WHK +W ++  PKFS   WLA++ RL T DR+   ++     CV
Sbjct: 762  TKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCV 821

Query: 1556 LCDTSDETHDHLFFKCEKSLAVWSSICSWLRCRNQMTTIPSAIRRFQREKAGSGIIRKAK 1735
             C +  ET DHLFF+C  S  +W+SI   +  +++ +T  SA+  +  +     I     
Sbjct: 822  FCSSPMETRDHLFFQCCYSSEIWTSIAKNV-YKDRFSTKWSAVVNYISDSQPDRIQSFLS 880

Query: 1736 WIALGATVQYLWQARNLKYVDKKPFEASHIIKEI 1837
                  ++  +W+ RN +   +K   AS++I++I
Sbjct: 881  RYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQI 914


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  342 bits (877), Expect = 3e-91
 Identities = 172/420 (40%), Positives = 255/420 (60%), Gaps = 5/420 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF KG +   +N TI++LI K    SG+ D+RPI+C NV+YKI++K++ NR+  +L   I
Sbjct: 646  FFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEILPASI 705

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
            +P Q+AFIK R + +N  LA EL+K Y + S I++R  +KID+ KA+D + W FL  VL 
Sbjct: 706  APNQSAFIKDRLMMENLLLASELVKDYHKES-ISSRSALKIDISKAFDFVQWPFLINVLK 764

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             ++    FI+WI  C+ +++FS+ +NG   GF R +RGLRQG  +SP L+++CM+ LS +
Sbjct: 765  AIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCM 824

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L          +HP+C   ++THL FADD+++F  G   S++      E+F A S L I+
Sbjct: 825  LDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKIS 884

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              KS +F+ G+ P  K  IL+ F F  GTLPVKYLGLPL +K +T  DY PL+ +I   I
Sbjct: 885  LEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARI 944

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-----GSSY 1066
              W+   LS AGRL+LI+SVL  +  +WL    LP   +  I K+   FLW      +  
Sbjct: 945  TSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKK 1004

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              ++W  VC  ++EGGLGL+ L   N+    K +W I +  D+LW+KW++   +R +  W
Sbjct: 1005 AKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFW 1064



 Score = 63.9 bits (154), Expect = 2e-07
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = +2

Query: 1382 TSEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRL-KHSDIAR-GCV 1555
            +S+ ++  R+   +  W++ +W S   PK+S   WLA   RL T D++ K +  AR  CV
Sbjct: 1187 SSKTWQQIRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCV 1246

Query: 1556 LCDTSDETHDHLFFKCEKSLAVWSSICSWL 1645
             C    ET DHLFF C  S  VW S+   L
Sbjct: 1247 FCGEELETRDHLFFSCPYSSHVWFSLTKGL 1276


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  338 bits (867), Expect = 5e-90
 Identities = 173/420 (41%), Positives = 247/420 (58%), Gaps = 5/420 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF KG +   LN TI++LIPK      + D+RPI+C NV+YK+I+KIL NR+  LL   I
Sbjct: 796  FFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFI 855

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
               Q+AF+K R + +N  LA EL+K Y + S +T R  +KID+ KA+D + W FL   L 
Sbjct: 856  LQNQSAFVKERLLMENVLLATELVKDYHKES-VTPRCAMKIDISKAFDSVQWQFLLNTLE 914

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             LNF   F +WI  C++++TFS+ +NG   GF    RGLRQG  +SP LF++CM+ LS +
Sbjct: 915  ALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHM 974

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            +          +HPKC+   +THL FADDL++F  G   S+  + +  +EF   SGL I+
Sbjct: 975  IDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQIS 1034

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              KS ++L GV   ++ + L  F F  G LPV+YLGLPL +K +TT DY+PLI  +   I
Sbjct: 1035 LEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKI 1094

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLWGS-----SY 1066
              W+  +LS AGRL L+ SV+  +  +W+ A  LP   I  I KL   FLW         
Sbjct: 1095 SSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKK 1154

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              ++W ++C P+KEGGLG++ LA  NK    K +W + +   +LW+ WI    +R    W
Sbjct: 1155 AKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFW 1214



 Score = 74.3 bits (181), Expect = 2e-10
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
 Frame = +2

Query: 1382 TSEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLK--HSDIARGCV 1555
            T   + + R    ++ W+K +W  Y  PK+S  LWL +Q RL T DR+K  +S     C 
Sbjct: 1338 TKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCT 1397

Query: 1556 LCDTSDETHDHLFFKCEKSLAVWSSICSWLRCRN 1657
            LC+ ++ET DHLFF C+ +  VW ++   L   N
Sbjct: 1398 LCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTN 1431


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  337 bits (863), Expect = 1e-89
 Identities = 180/465 (38%), Positives = 274/465 (58%), Gaps = 10/465 (2%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF+ G +  + N T + LIPK T+ S + DFRPI+C N VYK+I+K+LT+R+   L   I
Sbjct: 390  FFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAI 449

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
            S +Q+AF+ GR   +N  LA EL+  Y + + I    M+K+DLRKA+D + W F+   L 
Sbjct: 450  SHSQSAFMPGRLFLENVLLATELVHGYNKKN-IAPSSMLKVDLRKAFDSVRWDFIVSALR 508

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             LN    F  WI+ C+++++FS+ +NG + G     +GLRQGDPMSP LF+L M+  S L
Sbjct: 509  ALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGL 568

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L +R  +    +HPK    +I+HL FADD+++F  G   S+  + ++LE+F   SGL +N
Sbjct: 569  LQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMN 628

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
             +K+ ++  G+   E   +   +GF  G+LPV+YLGLPL S+ LT  +YAPLI +I+   
Sbjct: 629  TNKTQLYHAGLSQSESDSMAS-YGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARF 687

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLWGS-----SY 1066
            + W    LS AGR++L+ SV+ G+  +W+ +  LP   I +I  L  +FLW S       
Sbjct: 688  NSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGI 747

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQ--D 1240
              V+W  VCLP+ EGG+GLR  AV N+ L+ + +W + + + +LW+ W H ++  G+   
Sbjct: 748  AKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAW-HKQHSLGKSTS 806

Query: 1241 IWEFPSPKRDAPHITNILRIR---DRLILDCGGNLNDAKALLVGW 1366
             W  P    D+ +   +LR+R   +R I    GN  DA      W
Sbjct: 807  FWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFDNW 851


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  336 bits (862), Expect = 2e-89
 Identities = 169/428 (39%), Positives = 252/428 (58%), Gaps = 5/428 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF  G +  + N T + LIPKT++   + +FRPI+C N +YK+I+K+LT+R+  LL  +I
Sbjct: 353  FFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVI 412

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
              +Q+AF+ GRS+ +N  LA E++  Y R + I+ RGM+K+DL+KA+D + W F+   L 
Sbjct: 413  GHSQSAFLPGRSLAENVLLATEMVHGYNRLN-ISPRGMLKVDLKKAFDSVKWEFVTAALR 471

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             L     +I WI  C+T+ +F+I++NG   GF R  +GLRQGDP+SP LF+L M+  S+L
Sbjct: 472  ALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKL 531

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L++R  +    +HPK     I+HL FADD+++F  G   SM  + + L++F   SGL +N
Sbjct: 532  LYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVN 591

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
            K KS +F  G+    ++     +GFP GT P++YLGLPL  + L   DY PL+ ++S  +
Sbjct: 592  KDKSQLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARL 650

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-----GSSY 1066
              W    LS AGR +LI SV+ G+  +W+    LP   I +I  L  KFLW     G   
Sbjct: 651  RSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKS 710

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              VSW   CLP+ EGGLG R    WNK L  + +W +  +  +LW +W     L     W
Sbjct: 711  SKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFW 770

Query: 1247 EFPSPKRD 1270
            +  + + D
Sbjct: 771  QVNALQTD 778



 Score = 59.7 bits (143), Expect = 4e-06
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 4/169 (2%)
 Frame = +2

Query: 1373 GKGTSEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLKHSDIARG- 1549
            G   ++ +E  R +   K W K++W     PK +   W A   RL T  RL    +    
Sbjct: 891  GFSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSA 950

Query: 1550 -CVLCDTSDETHDHLFFKCEKSLAVWSSICSWLRCRNQMTTIPSAIRRFQREK--AGSGI 1720
             C LC    ET DHL   C+ S  VW  +   L  R ++    + +  + R+   A   +
Sbjct: 951  ECCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQSTAAAPSL 1010

Query: 1721 IRKAKWIALGATVQYLWQARNLKYVDKKPFEASHIIKEIKLDVYRVLYS 1867
            +RK   +     V  LW+ RNL          S + + +  ++  V+ S
Sbjct: 1011 LRK---VVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILS 1056


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  336 bits (862), Expect = 2e-89
 Identities = 169/428 (39%), Positives = 252/428 (58%), Gaps = 5/428 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF  G +  + N T + LIPKT++   + +FRPI+C N +YK+I+K+LT+R+  LL  +I
Sbjct: 353  FFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVI 412

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
              +Q+AF+ GRS+ +N  LA E++  Y R + I+ RGM+K+DL+KA+D + W F+   L 
Sbjct: 413  GHSQSAFLPGRSLAENVLLATEMVHGYNRLN-ISPRGMLKVDLKKAFDSVKWEFVTAALR 471

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             L     +I WI  C+T+ +F+I++NG   GF R  +GLRQGDP+SP LF+L M+  S+L
Sbjct: 472  ALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKL 531

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            L++R  +    +HPK     I+HL FADD+++F  G   SM  + + L++F   SGL +N
Sbjct: 532  LYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVN 591

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
            K KS +F  G+    ++     +GFP GT P++YLGLPL  + L   DY PL+ ++S  +
Sbjct: 592  KDKSQLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARL 650

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-----GSSY 1066
              W    LS AGR +LI SV+ G+  +W+    LP   I +I  L  KFLW     G   
Sbjct: 651  RSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKS 710

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              VSW   CLP+ EGGLG R    WNK L  + +W +  +  +LW +W     L     W
Sbjct: 711  SKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFW 770

Query: 1247 EFPSPKRD 1270
            +  + + D
Sbjct: 771  QVNALQTD 778



 Score = 58.5 bits (140), Expect = 1e-05
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 4/169 (2%)
 Frame = +2

Query: 1373 GKGTSEAYEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLDRLKHSDIARG- 1549
            G   ++ +E  R +   K W +++W     PK +   W A   RL T  RL    +    
Sbjct: 891  GFSAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSA 950

Query: 1550 -CVLCDTSDETHDHLFFKCEKSLAVWSSICSWLRCRNQMTTIPSAIRRFQREK--AGSGI 1720
             C LC    ET DHL   C+ S  VW  +   L  R ++    + +  + R+   A   +
Sbjct: 951  ECCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQSTAAAPSL 1010

Query: 1721 IRKAKWIALGATVQYLWQARNLKYVDKKPFEASHIIKEIKLDVYRVLYS 1867
            +RK   +     V  LW+ RNL          S + + +  ++  V+ S
Sbjct: 1011 LRK---VVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILS 1056


>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
            lycopersicum]
          Length = 717

 Score =  335 bits (859), Expect = 4e-89
 Identities = 168/376 (44%), Positives = 235/376 (62%), Gaps = 5/376 (1%)
 Frame = +2

Query: 137  KILTNRMSPLLHKLISPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRK 316
            K + N  +P++H +IS +QA FI GR I DN  LA EL+K Y R + ++ R M+KIDL K
Sbjct: 337  KSIGNDKAPVIHTIISDSQAGFIPGRKIGDNIILAHELVKAYTRKN-VSPRCMLKIDLHK 395

Query: 317  AYDCISWGFLREVLHGLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPM 496
            AYD + W FL +V+ GL F   F  W+M CV +  ++I +NG         +GLRQGDPM
Sbjct: 396  AYDSVEWPFLEQVMEGLGFPDLFTKWVMKCVKTVNYTIVVNGQNTQRFDAAKGLRQGDPM 455

Query: 497  SPSLFLLCMDYLSRLLHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLR 676
            SP LF + M+YLSRLL       +F +HPK    D+THL FADDLLLF RGD +S++ L+
Sbjct: 456  SPFLFAIAMEYLSRLLKGLKEDKSFKYHPKYAKLDVTHLCFADDLLLFSRGDLNSIKALQ 515

Query: 677  DALEEFTATSGLAINKSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLT 856
                EF+  SGL  N +KS ++ GGV+   +Q+I++  G+    LP KYLG+PL+SK L 
Sbjct: 516  KCFTEFSQASGLQANLNKSSIYCGGVQMEVRQQIIQQLGYTIEELPFKYLGVPLSSKKLN 575

Query: 857  TPDYAPLITQISNFIHRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKL 1036
            T  + PLI ++   I+ W+   LS AGR +L+++VL GV+  W Q   +P  +I  I  L
Sbjct: 576  TIQWYPLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWAQLFIIPAKIIKLIEGL 635

Query: 1037 IRKFLW-GSSYCP----VSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLW 1201
             R +LW G  Y      ++W  VC P+ EGGLGL +L +WN++  +K  W++  K D LW
Sbjct: 636  CRSYLWSGVGYVTKKALIAWDKVCSPKYEGGLGLINLKIWNRSAVTKLCWDLANKEDKLW 695

Query: 1202 IKWIHAEYLRGQDIWE 1249
            IKWIHA Y++GQ  W+
Sbjct: 696  IKWIHAYYIKGQREWK 711


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  333 bits (855), Expect = 1e-88
 Identities = 220/668 (32%), Positives = 330/668 (49%), Gaps = 44/668 (6%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTN----VVYKIITKILTNRMSPLL 169
            FF+  ++  + N T + LIPK T+ S + DFRPI+C +     +YK+I ++LTNR+  LL
Sbjct: 442  FFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLL 501

Query: 170  HKLISPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLR 349
             ++ISP Q+AF+ GR + +N  LA EL++ Y R + I  RGM+K+DLRKA+D I W F+ 
Sbjct: 502  SQVISPFQSAFLPGRFLAENVLLATELVQGYNRQN-IDPRGMLKVDLRKAFDSIRWDFII 560

Query: 350  EVLHGLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDY 529
              L  +     F+YWI  C+++ TFS+ +NG   GF +  RGLRQG+P+SP LF+L M+ 
Sbjct: 561  SALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEV 620

Query: 530  LSRLLHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSG 709
             S LL++R  A    +HPK     I+HL FADD+++F  G   S+  + +ALE+F   SG
Sbjct: 621  FSSLLNSRFQAGYIHYHPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSG 680

Query: 710  LAINKSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQI 889
            L +N+ K+H++L G+   E   I                     ++ L   +Y PL+ ++
Sbjct: 681  LVLNREKTHLYLAGLDRIEASTI---------------------ARKLRIAEYGPLLEKL 719

Query: 890  SNFIHRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLWGSSY- 1066
            +     WS   LS AGR++LI SV+ G+  +W+    LP   + RI  L  +FLW  +  
Sbjct: 720  AKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLWSGNID 779

Query: 1067 ----CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWI-KW------- 1210
                  V+W  VCLP++EGG+GLR   V N      TLW+   K  + W   W       
Sbjct: 780  VKKGAKVAWSEVCLPKEEGGVGLRRFTVLN-----TTLWD--GKKISFWFDNWSPLGPLF 832

Query: 1211 --------------IHAEYLRG-QDIWEFPSPKRDAPHITNILRIRDRLILDCGGNLNDA 1345
                          I A+      D+    SP R    +  ++ +   + L C  +  D 
Sbjct: 833  KLFGSSGPRALCIPIQAKVADACSDVGWLISPPRTDQALALLIHL-TTIALPCFDSSPDT 891

Query: 1346 KALLVGWFTGKGTSEA--YEHFRAKGEKKFWHKAIWRSYIPPKFSVTLWLALQGRLKTLD 1519
               +V  FT  G S A  +E  R K   K W K++W     PK +  +W++   RL T  
Sbjct: 892  FVWIVDDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQ 951

Query: 1520 RLKHSDI--ARGCVLCDTSDETHDHLFFKCEKSLAVWSSICSWLRCRNQMTTIPS----- 1678
            RL    +     C LC +  E+ DHL   C  S  +W  +  + R         S     
Sbjct: 952  RLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIWKLV--FFRLTPSQAIFNSWAELL 1009

Query: 1679 AIRRFQREKAGSGIIRKAKWIALGATVQYLWQARN---LKYVDKKPFEASHIIKEIKLDV 1849
            +  R    KA S ++RK   IA  A+V +LW+ RN      +   P    H I     ++
Sbjct: 1010 SWTRINSSKAPS-LLRK---IAAQASVFHLWKQRNNVLHNSIFISPATVFHFIDRELENL 1065

Query: 1850 YRVLYSLF 1873
            YR +  LF
Sbjct: 1066 YRYIQILF 1073


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  331 bits (848), Expect = 8e-88
 Identities = 167/420 (39%), Positives = 248/420 (59%), Gaps = 5/420 (1%)
 Frame = +2

Query: 2    FFSKGLIFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLI 181
            FF KG +   LN TI++LIPK    + + D+RPI+C NV+YK+I+KI+ NR+  +L   I
Sbjct: 72   FFIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFI 131

Query: 182  SPAQAAFIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLH 361
               Q+AF++ R + +N  LA EL+K Y + S I+ R  +KID+ KA+D + W FL   L 
Sbjct: 132  LQNQSAFVRERLLIENVLLATELVKDYHKDS-ISPRCAMKIDISKAFDSVQWQFLLNTLE 190

Query: 362  GLNFHSCFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRL 541
             LNF   F +WI  C++++TFS+ +NG   GF   +RGLRQG  +SP LF++CM+ LS +
Sbjct: 191  ALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHM 250

Query: 542  LHARTHASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAIN 721
            +          +HPKC    +THL FADDL++F  G   S+  + +  +EF   SGL I+
Sbjct: 251  IDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHIS 310

Query: 722  KSKSHVFLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFI 901
              KS ++L GV    +  IL  F F  G LPV+YLGLPL +K +TT DY+PL+ ++ + I
Sbjct: 311  LEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKI 370

Query: 902  HRWSYSNLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLWGS-----SY 1066
              W+  +LS AGRL LI SV+  +  +W+ A  LP   I  I KL   FLW         
Sbjct: 371  SSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKK 430

Query: 1067 CPVSWKTVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIW 1246
              ++W ++C  ++EGGLG++ L   NK    K +W + ++  +LW+ W+    +R    W
Sbjct: 431  AKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFW 490


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|7267919|emb|CAB78261.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 662

 Score =  330 bits (846), Expect = 1e-87
 Identities = 169/434 (38%), Positives = 257/434 (59%), Gaps = 5/434 (1%)
 Frame = +2

Query: 20   IFCKLNHTIVSLIPKTTHDSGVFDFRPIACTNVVYKIITKILTNRMSPLLHKLISPAQAA 199
            I+  +N TI++LIPK      + D+RPI+C NV+YK+I+KI+ NR+  +L + I+  Q+A
Sbjct: 23   IYNGVNSTILALIPKKMEAKEIKDYRPISCCNVLYKVISKIIANRLKRVLPQFIAGNQSA 82

Query: 200  FIKGRSITDNFFLAQELIKKYERTSGITARGMVKIDLRKAYDCISWGFLREVLHGLNFHS 379
            FIK R + +N  LA EL+K Y + S ++ R  +KID+ KA+D + W FLR VL  L+F  
Sbjct: 83   FIKDRLLIENLLLATELVKDYHKDS-VSERCAIKIDISKAFDSVQWSFLRNVLLTLDFPQ 141

Query: 380  CFIYWIMTCVTSSTFSIAINGGAHGFIRGQRGLRQGDPMSPSLFLLCMDYLSRLLHARTH 559
             F++WIM CVT+++FS+ +N    G+    RGLRQG  ++P LF++ MD LS+ L     
Sbjct: 142  EFVHWIMLCVTTASFSVQVNRELAGYFNSLRGLRQGCSLTPYLFVIVMDVLSKKLDRAAG 201

Query: 560  ASTFIHHPKCDTTDITHLAFADDLLLFGRGDPDSMRVLRDALEEFTATSGLAINKSKSHV 739
               F +HPKC    +THL+FADD+++   G   S+  + +  + F   SGL I+ +K+ +
Sbjct: 202  LRKFGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTI 261

Query: 740  FLGGVRPYEKQEILELFGFPEGTLPVKYLGLPLASKSLTTPDYAPLITQISNFIHRWSYS 919
            +  G+     +E  + F F  G LPV+YL LPL +K  T+ DY+PL+ QI   I  W+  
Sbjct: 262  YFAGISKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGTWTAR 321

Query: 920  NLSRAGRLELIQSVLQGVECYWLQALPLPGTVINRITKLIRKFLW-----GSSYCPVSWK 1084
             LS AGRL L+ SVL  +  +WL A  LP   +  I KL   FLW      ++   ++W+
Sbjct: 322  FLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCSAFLWSGPELSTNKAKIAWE 381

Query: 1085 TVCLPRKEGGLGLRDLAVWNKALHSKTLWNIHAKTDTLWIKWIHAEYLRGQDIWEFPSPK 1264
            TVC P++EGGLGL+ +   N     K +W I ++ D+LW++WI    L+    W F S  
Sbjct: 382  TVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSAS 441

Query: 1265 RDAPHITNILRIRD 1306
            + +     +L+ RD
Sbjct: 442  QGSWMWKKLLKYRD 455