BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00026054
         (1298 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_068729.1| putative reverse transcriptase [Soybean chlorot...   136   2e-29
ref|NP_861410.1| putative multifunctional pol protein [Cestrum y...   114   1e-22
gb|AEQ49590.1| transciptional activator [Blueberry red ringspot ...   110   1e-21
gb|ADX60605.2| transcriptional activator [Blueberry red ringspot...   109   3e-21
gb|AEH95574.1| translational transactivator [Blueberry red rings...   108   4e-21
gb|ADX60607.2| transcriptional activator [Blueberry red ringspot...   108   4e-21
ref|NP_395470.1| putative translational transactivator [Blueberr...   108   5e-21
gb|ADX60611.2| transcriptional activator [Blueberry red ringspot...   108   5e-21
gb|AEE01493.1| translational transactivator [Blueberry red rings...   107   1e-20
gb|AEE01492.1| reverse transcriptase [Blueberry red ringspot virus]   106   2e-20
gb|AEQ49589.1| reverse transcriptase [Blueberry red ringspot virus]   105   6e-20
ref|NP_395469.1| putative reverse transcriptase [Blueberry red r...   103   2e-19
gb|AEQ38577.1| reverse transcriptase [Blueberry red ringspot virus]   103   2e-19
gb|AEH95573.1| reverse transcriptase [Blueberry red ringspot virus]   103   2e-19
ref|NP_042514.1| hypothetical protein [Peanut chlorotic streak v...   100   1e-18
ref|XP_003614360.1| Movement protein [Medicago truncatula] gi|35...    98   9e-18
ref|NP_042513.1| reverse transcriptase [Peanut chlorotic streak ...    92   5e-16
ref|NP_068730.1| putative inclusion body protein [Soybean chloro...    89   4e-15
ref|YP_001931967.1| replicase [Eupatorium vein clearing virus] g...    85   6e-14
gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus]     83   2e-13

>ref|NP_068729.1| putative reverse transcriptase [Soybean chlorotic mottle virus]
            gi|18266821|sp|P15629.2|POL_SOCMV RecName: Full=Enzymatic
            polyprotein; Includes: RecName: Full=Aspartic protease;
            Includes: RecName: Full=Endonuclease; Includes: RecName:
            Full=Reverse transcriptase gi|11322953|emb|CAC16945.1|
            putative reverse transcriptase [Soybean chlorotic mottle
            virus]
          Length = 692

 Score =  136 bits (342), Expect = 2e-29
 Identities = 72/163 (44%), Positives = 98/163 (60%), Gaps = 6/163 (3%)
 Frame = -2

Query: 1297 IKEGKSKLGLNEFG----EIINSNLSEDIPNSQNKLQISNIDIMTDSKLSSQISKYQT-- 1136
            + +GK K+GL+EFG    ++   + S    NS  ++   +     D+ ++S+I K +   
Sbjct: 526  LPKGKQKIGLDEFGIPTADLCTGSSSASSDNSPAEIDKCHSASKQDTHVASKIKKLENEL 585

Query: 1135 ILCKYCSGTFKQAELNYPIHEKETLAALRVIEKWPIELLTQRFELRTDSSYVSTFIRNKQ 956
            +LCKY SGTF   E  YPI E E LA ++V+EKW I+LL  RF LRTDS Y + F R   
Sbjct: 586  LLCKYVSGTFTDTETRYPIAELEVLAGVKVLEKWRIDLLQTRFLLRTDSKYFAGFCRYNI 645

Query: 955  IQKSNKGRLIRWYQRFNLFNPIIKLVKSENNPFADTLTREWKE 827
                  GRLIRW  R   + P ++L+KSENNPFADTLTREW +
Sbjct: 646  KTDYRNGRLIRWQLRLQAYQPYVELIKSENNPFADTLTREWSK 688


>ref|NP_861410.1| putative multifunctional pol protein [Cestrum yellow leaf curling
            virus] gi|75559686|sp|Q7TD08.1|POL_CYLCV RecName:
            Full=Enzymatic polyprotein; Includes: RecName:
            Full=Aspartic protease; Includes: RecName:
            Full=Endonuclease; Includes: RecName: Full=Reverse
            transcriptase gi|32305282|gb|AAP78924.1| putative
            multifunctional pol protein [Cestrum yellow leaf curling
            virus]
          Length = 643

 Score =  114 bits (284), Expect = 1e-22
 Identities = 54/102 (52%), Positives = 67/102 (65%)
 Frame = -2

Query: 1132 LCKYCSGTFKQAELNYPIHEKETLAALRVIEKWPIELLTQRFELRTDSSYVSTFIRNKQI 953
            LCKY SG F  AE  Y +HEKETLAAL+ + KW  ELL + F LRTDSSYV+ F R+   
Sbjct: 541  LCKYTSGIFSSAEQKYTVHEKETLAALKTMRKWKAELLPKEFTLRTDSSYVTGFARHNLK 600

Query: 952  QKSNKGRLIRWYQRFNLFNPIIKLVKSENNPFADTLTREWKE 827
               N+GRL+RW   F  +   ++ +K E N  ADTLTREWK+
Sbjct: 601  ANYNQGRLVRWQLEFLQYPARVEYIKGEKNSLADTLTREWKQ 642


>gb|AEQ49590.1| transciptional activator [Blueberry red ringspot virus]
          Length = 427

 Score =  110 bits (275), Expect = 1e-21
 Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 12/290 (4%)
 Frame = -1

Query: 836 MEGAIKQLINQRKQLIEVVAVKQEEIRKLTETIQHLASIEPSLQIPXXXXXXXXXXXEAS 657
           MEGAIK L NQ     +    K++++ +L   I +L S    L              ++S
Sbjct: 1   MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILS------------GDSS 48

Query: 656 KPNDDIKEASEPKIIKNGQAQNELDTINKK-AQKSNKNKWTVIFDGPMSGVYKDWNIAAQ 480
           K +  + E  +  ++ N      ++ +NK+ A   +K ++ VIF+GPM G+Y +W+ AA 
Sbjct: 49  KLSPSVPEEKKYSVLAN------IEEVNKQVALARSKKEYYVIFNGPMKGIYDEWHKAAP 102

Query: 479 FIKGRN---HCSYNTKEEAEEAFRSKYKSVLEKEQVITKPKLTI------NIPKIQSIKT 327
            I+G++   H  Y T +EA++A    Y ++          K+ +      ++P I SI+T
Sbjct: 103 HIQGQSNIIHKKYPTIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQT 162

Query: 326 KMQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNKG--GPKAVATDAAAPVEVYKL 153
                  L V Q  Y  + + L  Y +  + L FYP  +   G KA+    A+ +  Y+L
Sbjct: 163 IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTYEL 222

Query: 152 FQEGLLAMIYTSSITTFRFFPVKFREAIEFYMKSKGHGREIYVRIHNTTP 3
           F+ GL   IY S    F  FP + ++ I  Y K     R  Y+++ +T P
Sbjct: 223 FKNGLADTIYFSDSKVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHP 272


>gb|ADX60605.2| transcriptional activator [Blueberry red ringspot virus]
          Length = 427

 Score =  109 bits (272), Expect = 3e-21
 Identities = 83/293 (28%), Positives = 140/293 (47%), Gaps = 15/293 (5%)
 Frame = -1

Query: 836 MEGAIKQLINQRKQLIEVVAVKQEEIRKLTETIQHLASIEPSLQIPXXXXXXXXXXXEAS 657
           MEGAIK L NQ     +    K++++ +L   I +L S    L              ++S
Sbjct: 1   MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILS------------GDSS 48

Query: 656 KPNDDIKEASEPKIIKNGQAQNELDTINKK-AQKSNKNKWTVIFDGPMSGVYKDWNIAAQ 480
           K +  + E  +  ++ N      ++ +N++ A   +K ++ VIF+GPM G+Y +W+ AA 
Sbjct: 49  KLSPSVPEEKKHSVLAN------MEEVNRQVALARSKKEYYVIFNGPMKGIYDEWHKAAP 102

Query: 479 FIKGRN---HCSYNTKEEAEEAFRSKYKSVLE-----KEQVIT----KPKLTINIPKIQS 336
            I+G++   H  Y T +EA++A    Y ++       K+  +     K  L   I  IQ+
Sbjct: 103 HIQGQSNIIHKKYPTIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPLVPTIDSIQT 162

Query: 335 IKTKMQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNKG--GPKAVATDAAAPVEV 162
           I++KM+    L V Q  Y  + + L  Y +  + L FYP  +   G KA+    A+ +  
Sbjct: 163 IESKMKA---LKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTT 219

Query: 161 YKLFQEGLLAMIYTSSITTFRFFPVKFREAIEFYMKSKGHGREIYVRIHNTTP 3
           Y+LF+ GL   IY S    F  FP + ++ I  Y K     R  Y+++ +T P
Sbjct: 220 YELFKNGLADTIYFSDSKIFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHP 272


>gb|AEH95574.1| translational transactivator [Blueberry red ringspot virus]
          Length = 427

 Score =  108 bits (271), Expect = 4e-21
 Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 12/290 (4%)
 Frame = -1

Query: 836 MEGAIKQLINQRKQLIEVVAVKQEEIRKLTETIQHLASIEPSLQIPXXXXXXXXXXXEAS 657
           MEGAIK L NQ     +    K++++ +L   I +L S    L              ++S
Sbjct: 1   MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILS------------GDSS 48

Query: 656 KPNDDIKEASEPKIIKNGQAQNELDTINKK-AQKSNKNKWTVIFDGPMSGVYKDWNIAAQ 480
           K +    E  +  ++ N      ++ +NK+ A   +K ++ VIF+GPM G+Y +W+ AA 
Sbjct: 49  KLSPSAPEEKKYSVLAN------IEEVNKQVAAAKSKKEYYVIFNGPMKGIYDEWHKAAP 102

Query: 479 FIKGRN---HCSYNTKEEAEEAFRSKYKSVLEKEQVITKPKLTI------NIPKIQSIKT 327
            I+G++   H  Y   +EA++A    Y ++          K+ +      ++P I SI+T
Sbjct: 103 HIQGQSSIIHKKYPNIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQT 162

Query: 326 KMQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNKG--GPKAVATDAAAPVEVYKL 153
                  L V Q  Y  + + L  Y +  + L FYP  +   G KA+    A+ + +Y+L
Sbjct: 163 IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTIYEL 222

Query: 152 FQEGLLAMIYTSSITTFRFFPVKFREAIEFYMKSKGHGREIYVRIHNTTP 3
           F+ GL   IY S    F  FP + ++ I  Y K     R  Y+++ +T P
Sbjct: 223 FKNGLADTIYFSDSKVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHP 272


>gb|ADX60607.2| transcriptional activator [Blueberry red ringspot virus]
          Length = 427

 Score =  108 bits (271), Expect = 4e-21
 Identities = 81/290 (27%), Positives = 134/290 (46%), Gaps = 12/290 (4%)
 Frame = -1

Query: 836 MEGAIKQLINQRKQLIEVVAVKQEEIRKLTETIQHLASIEPSLQIPXXXXXXXXXXXEAS 657
           MEGAIK L NQ     +    K++++ +L   I +L S    L              ++S
Sbjct: 1   MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILS------------GDSS 48

Query: 656 KPNDDIKEASEPKIIKNGQAQNELDTINKK-AQKSNKNKWTVIFDGPMSGVYKDWNIAAQ 480
           K +    E  +  ++ N      ++ +NK+ A    K ++ VIF+GPM G+Y +W+ AA 
Sbjct: 49  KLSPSAPEEKKYSVLAN------IEEVNKQVATARGKKEYYVIFNGPMKGIYDEWHKAAP 102

Query: 479 FIKGRN---HCSYNTKEEAEEAFRSKYKSVLEKEQVITKPKLTI------NIPKIQSIKT 327
            I+G++   H  Y T +EA++A    Y ++          K+ +      ++P I SI+T
Sbjct: 103 HIQGQSNIIHKKYPTIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQT 162

Query: 326 KMQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNKG--GPKAVATDAAAPVEVYKL 153
                  L V Q  Y  + + L  Y +  + L FYP  +   G KA+    A+ +  Y+L
Sbjct: 163 IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTYEL 222

Query: 152 FQEGLLAMIYTSSITTFRFFPVKFREAIEFYMKSKGHGREIYVRIHNTTP 3
           F+ GL   IY S    F  FP + ++ I  Y K     R  Y+++ +T P
Sbjct: 223 FKNGLADTIYFSDSKVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHP 272


>ref|NP_395470.1| putative translational transactivator [Blueberry red ringspot
           virus] gi|16033537|gb|AAL13275.1|AF404509_5 putative
           translational transactivator [Blueberry red ringspot
           virus]
          Length = 428

 Score =  108 bits (270), Expect = 5e-21
 Identities = 80/290 (27%), Positives = 134/290 (46%), Gaps = 12/290 (4%)
 Frame = -1

Query: 836 MEGAIKQLINQRKQLIEVVAVKQEEIRKLTETIQHLASIEPSLQIPXXXXXXXXXXXEAS 657
           MEGAIK L NQ     +    K++++ +L   I +L S    L              ++S
Sbjct: 1   MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILS------------GDSS 48

Query: 656 KPNDDIKEASEPKIIKNGQAQNELDTINKK-AQKSNKNKWTVIFDGPMSGVYKDWNIAAQ 480
           K +  + E  +  ++ N      ++ +NK+ A   +K ++ VIF+GPM G+Y +W+ AA 
Sbjct: 49  KLSPSVPEEKKYSVLAN------IEEVNKQVASARSKKEYYVIFNGPMKGIYDEWHKAAP 102

Query: 479 FIKGRN---HCSYNTKEEAEEAFRSKYKSVLEKEQVITKPKLTI------NIPKIQSIKT 327
            I+G++   H  Y T +EA++A    Y ++          K+ +      ++P I SI+T
Sbjct: 103 HIQGQSSIIHKKYPTIDEAKKALEGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQT 162

Query: 326 KMQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNKG--GPKAVATDAAAPVEVYKL 153
                  L V    Y  + + L  Y +  + L FYP  +   G KA+    A+    Y+L
Sbjct: 163 IESKMKALKVTPKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASAFTTYEL 222

Query: 152 FQEGLLAMIYTSSITTFRFFPVKFREAIEFYMKSKGHGREIYVRIHNTTP 3
           F+ GL   IY S    F  FP + ++ I  Y K     R  Y+++ +T P
Sbjct: 223 FKNGLADTIYFSDSKIFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHP 272


>gb|ADX60611.2| transcriptional activator [Blueberry red ringspot virus]
          Length = 427

 Score =  108 bits (270), Expect = 5e-21
 Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 12/290 (4%)
 Frame = -1

Query: 836 MEGAIKQLINQRKQLIEVVAVKQEEIRKLTETIQHLASIEPSLQIPXXXXXXXXXXXEAS 657
           MEGAIK L NQ     +    K++++ +L   I +L S    L              ++S
Sbjct: 1   MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILS------------GDSS 48

Query: 656 KPNDDIKEASEPKIIKNGQAQNELDTINKK-AQKSNKNKWTVIFDGPMSGVYKDWNIAAQ 480
           K +    E  +  ++ N      ++ +NK+ A    K ++ VIF+GPM G+Y +W+ AA 
Sbjct: 49  KLSPSAPEEKKYSVLAN------IEEVNKQVAAAKGKKEYYVIFNGPMKGIYDEWHKAAP 102

Query: 479 FIKGRN---HCSYNTKEEAEEAFRSKYKSVL-----EKEQVITKPKLTI-NIPKIQSIKT 327
            I+G+    H  Y T +EA++A    Y ++      +K+  +   +  +  +P I SI+T
Sbjct: 103 HIQGQANIIHKKYPTIDEAKKALGGSYAAITNAPASQKDSKVLLGRFKVPTVPTIDSIQT 162

Query: 326 KMQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNKG--GPKAVATDAAAPVEVYKL 153
                  L V Q  Y  + + L  Y +  + L FYP  +   G KA+    A+ +  Y+L
Sbjct: 163 IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTYEL 222

Query: 152 FQEGLLAMIYTSSITTFRFFPVKFREAIEFYMKSKGHGREIYVRIHNTTP 3
           F+ GL   IY S    F  FP + ++ I  Y K     R  Y+++ +T P
Sbjct: 223 FKNGLADTIYFSDAKIFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHP 272


>gb|AEE01493.1| translational transactivator [Blueberry red ringspot virus]
          Length = 427

 Score =  107 bits (267), Expect = 1e-20
 Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 12/290 (4%)
 Frame = -1

Query: 836 MEGAIKQLINQRKQLIEVVAVKQEEIRKLTETIQHLASIEPSLQIPXXXXXXXXXXXEAS 657
           MEGAIK L NQ     +    K++++ +L   I +L S    L              ++S
Sbjct: 1   MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILS------------GDSS 48

Query: 656 KPNDDIKEASEPKIIKNGQAQNELDTINKK-AQKSNKNKWTVIFDGPMSGVYKDWNIAAQ 480
           K +  + E  +  ++       +++ +NK+ A   +K ++ VIF+GPM G+Y +W+ AA 
Sbjct: 49  KLSLSVPEEKKHSVLA------DIEEVNKQVALARSKKEYYVIFNGPMKGIYDEWHKAAP 102

Query: 479 FIKGRN---HCSYNTKEEAEEAFRSKYKSVLEKEQVITKPKLTI------NIPKIQSIKT 327
            I+G+    H  Y T +EA++A    Y ++          K+ +      ++P I SI+T
Sbjct: 103 HIQGKANIIHKKYPTIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQT 162

Query: 326 KMQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNKG--GPKAVATDAAAPVEVYKL 153
                  L V Q  Y  + + L  Y +  + L FYP  +   G KA+    A+ +  Y+L
Sbjct: 163 IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASSLTTYEL 222

Query: 152 FQEGLLAMIYTSSITTFRFFPVKFREAIEFYMKSKGHGREIYVRIHNTTP 3
           F+ GL   IY S    F  FP + ++ I  Y K     R  Y+++ +T P
Sbjct: 223 FKNGLADTIYFSDSRVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHP 272


>gb|AEE01492.1| reverse transcriptase [Blueberry red ringspot virus]
          Length = 680

 Score =  106 bits (265), Expect = 2e-20
 Identities = 59/124 (47%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
 Frame = -2

Query: 1177 TDSKLSSQISKYQT-------ILCKYCSGTFKQAELNYPIHEKETLAALRVIEKWPIELL 1019
            T   LSSQ   + T       +L KY SGTF   E  YPIHE ETLA L+   KW ++LL
Sbjct: 556  TAQALSSQYQFFGTKDFVQKELLTKYASGTFTDTEKRYPIHELETLAVLQTFRKWKVDLL 615

Query: 1018 TQRFELRTDSSYVSTFIRNKQIQKSNKGRLIRWYQRFNLFNPIIKLVKSENNPFADTLTR 839
            T+ F L+TDS YV+ F+R K     N+GRLIRW    + FN     +K   N   DTLTR
Sbjct: 616  TKPFILKTDSKYVTGFLRYKIKANYNQGRLIRWQLELSQFNYRTFYIKGSENYGPDTLTR 675

Query: 838  EWKE 827
            EWKE
Sbjct: 676  EWKE 679


>gb|AEQ49589.1| reverse transcriptase [Blueberry red ringspot virus]
          Length = 657

 Score =  105 bits (261), Expect = 6e-20
 Identities = 58/124 (46%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
 Frame = -2

Query: 1177 TDSKLSSQISKYQT-------ILCKYCSGTFKQAELNYPIHEKETLAALRVIEKWPIELL 1019
            T   LSSQ   + T       +L KY SGTF   E  YPIHE ETLA L+   KW ++LL
Sbjct: 533  TAQALSSQYQFFGTKDFVQKELLTKYASGTFTDTEKRYPIHELETLAVLQTFRKWKVDLL 592

Query: 1018 TQRFELRTDSSYVSTFIRNKQIQKSNKGRLIRWYQRFNLFNPIIKLVKSENNPFADTLTR 839
            ++ F L+TDS YV+ F+R K     N+GRLIRW    + FN     +K   N   DTLTR
Sbjct: 593  SKPFILKTDSKYVTGFLRYKIKANYNQGRLIRWQLELSQFNYRTFYIKGSENYGPDTLTR 652

Query: 838  EWKE 827
            EWKE
Sbjct: 653  EWKE 656


>ref|NP_395469.1| putative reverse transcriptase [Blueberry red ringspot virus]
            gi|16033536|gb|AAL13274.1|AF404509_4 putative reverse
            transcriptase [Blueberry red ringspot virus]
          Length = 657

 Score =  103 bits (257), Expect = 2e-19
 Identities = 57/124 (45%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
 Frame = -2

Query: 1177 TDSKLSSQISKYQT-------ILCKYCSGTFKQAELNYPIHEKETLAALRVIEKWPIELL 1019
            T   LSSQ   + T       +L KY SGTF   E  YPIHE ETLA L+   KW ++LL
Sbjct: 533  TAQALSSQYQFFGTKDFVQKELLTKYASGTFTDTEKRYPIHELETLAVLQTFRKWKVDLL 592

Query: 1018 TQRFELRTDSSYVSTFIRNKQIQKSNKGRLIRWYQRFNLFNPIIKLVKSENNPFADTLTR 839
            ++ F L+TDS YV+ F+R K     N+GR IRW    + FN     +K   N   DTLTR
Sbjct: 593  SKPFILKTDSKYVTGFLRYKIKANYNQGRFIRWQLELSQFNYRTFYIKGSENYGPDTLTR 652

Query: 838  EWKE 827
            EWKE
Sbjct: 653  EWKE 656


>gb|AEQ38577.1| reverse transcriptase [Blueberry red ringspot virus]
          Length = 657

 Score =  103 bits (256), Expect = 2e-19
 Identities = 57/124 (45%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
 Frame = -2

Query: 1177 TDSKLSSQISKYQT-------ILCKYCSGTFKQAELNYPIHEKETLAALRVIEKWPIELL 1019
            T   LSSQ   + T       +L KY SGTF   E  YPIHE ETLA L+   KW ++LL
Sbjct: 533  TAQALSSQYQFFGTKDFVQKELLTKYASGTFTDTEKRYPIHELETLAVLQTFRKWKVDLL 592

Query: 1018 TQRFELRTDSSYVSTFIRNKQIQKSNKGRLIRWYQRFNLFNPIIKLVKSENNPFADTLTR 839
            ++ F L+TDS YV+ F+R K     N+GRLIRW    + F+     +K   N   DTLTR
Sbjct: 593  SKPFILKTDSKYVTGFLRYKIKANYNQGRLIRWQLELSQFSYRTFYIKGSENYGPDTLTR 652

Query: 838  EWKE 827
            EWKE
Sbjct: 653  EWKE 656


>gb|AEH95573.1| reverse transcriptase [Blueberry red ringspot virus]
          Length = 667

 Score =  103 bits (256), Expect = 2e-19
 Identities = 57/124 (45%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
 Frame = -2

Query: 1177 TDSKLSSQISKYQT-------ILCKYCSGTFKQAELNYPIHEKETLAALRVIEKWPIELL 1019
            T   LSSQ   + T       +L KY SGTF   E  YPIHE ETLA L+   KW ++LL
Sbjct: 543  TAQALSSQYQFFGTKDFVQKELLTKYASGTFTDTEKRYPIHELETLAVLQTFRKWKVDLL 602

Query: 1018 TQRFELRTDSSYVSTFIRNKQIQKSNKGRLIRWYQRFNLFNPIIKLVKSENNPFADTLTR 839
            ++ F L+TDS YV+ F+R K     N+GRLIRW    + F+     +K   N   DTLTR
Sbjct: 603  SKPFILKTDSKYVTGFLRYKIKANYNQGRLIRWQLELSQFSYRTFYIKGSENYGPDTLTR 662

Query: 838  EWKE 827
            EWKE
Sbjct: 663  EWKE 666


>ref|NP_042514.1| hypothetical protein [Peanut chlorotic streak virus]
           gi|555886|gb|AAA50241.1| putative transactivation
           protein [Peanut chlorotic streak virus]
          Length = 420

 Score =  100 bits (249), Expect = 1e-18
 Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 33/311 (10%)
 Frame = -1

Query: 836 MEGAIKQLINQRKQLIEVVAVK-------QEEIRKLTETIQHLASIEPSLQIPXXXXXXX 678
           ME   K +  ++++L E +  K       Q+EI    + +  L+  E SL +        
Sbjct: 1   MEDIFKMISEKKEKLKEEIEEKRSLVSRLQKEISDKEKELSALSQTEQSLGL-------- 52

Query: 677 XXXXEASKPNDDIKEASEPKIIKNGQAQNELDTINKKAQKSNKNKWTVIFDGPMSGVYKD 498
                       IK+    K++    ++       K  ++    ++ VI++GP  G+Y +
Sbjct: 53  -----------SIKKEQPEKLVIQSSSE-------KYDEEERAKRYYVIYNGPGKGIYDE 94

Query: 497 WNIAAQFI---KGRNHCSYNTKEEAEEAFRSKYKSVLEKEQVIT---------KPKLT-- 360
           W  A+ FI   KG  H  + +K+EA+++F  + K   +  +V           KP+ +  
Sbjct: 95  WGKASLFITGVKGIRHKKFLSKKEAQDSFNEENKEAAKTAEVSKAYLEKLQSPKPQTSRM 154

Query: 359 INIPKIQS------IKTKMQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNKG--G 204
           +N+ KI S      I TK  ++    + +  Y   +  L+ Y++DD+Q   YPV+    G
Sbjct: 155 VNLGKIPSPRTIDHILTKADLQEKARLTKKIYDDDYMFLKKYSDDDKQTSIYPVDSKSLG 214

Query: 203 PKAVATDAAAPVEVYKLFQEGLLAMIYTSSITTFRFFPVKFREAIEFY----MKSKGHGR 36
            KAV    A  ++ Y L+Q G +  IY  S+  FR+FP   + AI+ Y    +K++   R
Sbjct: 215 AKAVVLPEADNIKTYMLYQCGFIHAIYFKSLDIFRYFPENMKRAIQVYAQRMLKAEKGMR 274

Query: 35  EIYVRIHNTTP 3
           E ++RI++T P
Sbjct: 275 EGFLRIYSTNP 285


>ref|XP_003614360.1| Movement protein [Medicago truncatula] gi|355515695|gb|AES97318.1|
           Movement protein [Medicago truncatula]
          Length = 560

 Score = 97.8 bits (242), Expect = 9e-18
 Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 11/192 (5%)
 Frame = -1

Query: 545 KWTVIFDGPMSGVYKDWNIAA---QFIKGRNHCSYNTKEEAEEAFRSKYKSVLEKEQVIT 375
           KW V+F+GP  G+Y DW  AA   Q I G  H +Y TKEEAE+A     +    + ++  
Sbjct: 11  KWYVVFNGPFPGIYDDWYKAAPHCQKISGVTHRAYATKEEAEKALMDHKELDKSRNEIYL 70

Query: 374 KPK-----LTINIPKIQSIKTKMQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNK 210
            P+        ++P I   + ++QV+     ++  +Q++F  L+ +T +++   FY V++
Sbjct: 71  GPRTFSETTRNDLPIISRKEHELQVQ----FSEEKFQENFNRLKNWTNEEKNNCFYMVSR 126

Query: 209 G--GPKAVATDAAAPVEVYKLFQEGLLAMIYTSSIT-TFRFFPVKFREAIEFYMKSKGHG 39
              G KAV T  A+P+  + +FQ GL+  IY S+ +     FPV  ++ ++ Y ++    
Sbjct: 127 NGFGLKAVITPEASPILAFNMFQFGLVQCIYLSANSEEISLFPVTLKDVVQSYKRNIARE 186

Query: 38  REIYVRIHNTTP 3
           R IY++ ++  P
Sbjct: 187 RSIYIKFYSAYP 198


>ref|NP_042513.1| reverse transcriptase [Peanut chlorotic streak virus]
            gi|555885|gb|AAA50240.1| reverse transcriptase [Peanut
            chlorotic streak virus]
          Length = 694

 Score = 92.0 bits (227), Expect = 5e-16
 Identities = 56/155 (36%), Positives = 78/155 (50%)
 Frame = -2

Query: 1294 KEGKSKLGLNEFGEIINSNLSEDIPNSQNKLQISNIDIMTDSKLSSQISKYQTILCKYCS 1115
            KEG S+       E +NS   +       K           S  S Q      ++ K+ S
Sbjct: 536  KEGSSRYAEKSVPEKLNSMHDKSHGEKAEKSVSRQTSQGRSSSQSQQSYIGSFMITKWSS 595

Query: 1114 GTFKQAELNYPIHEKETLAALRVIEKWPIELLTQRFELRTDSSYVSTFIRNKQIQKSNKG 935
            GTFK AE NY +HEKE LA +  ++K+ I+L   +F  +TD+S+V  F+ NK  +  N+G
Sbjct: 596  GTFKPAEENYTVHEKELLAFVNALKKFQIDLRPVKFIFQTDNSWVQGFLVNKLKETYNRG 655

Query: 934  RLIRWYQRFNLFNPIIKLVKSENNPFADTLTREWK 830
            RL RW      F+ I   +  + N  ADTLTREWK
Sbjct: 656  RLARWSMFIQQFDFISLHIAGKENYLADTLTREWK 690


>ref|NP_068730.1| putative inclusion body protein [Soybean chlorotic mottle virus]
           gi|18266820|sp|P15628.2|IBMP_SOCMV RecName:
           Full=Transactivator/viroplasmin protein; Short=Tav;
           AltName: Full=Inclusion body matrix protein
           gi|11322954|emb|CAC16946.1| putative inclusion body
           protein [Soybean chlorotic mottle virus]
          Length = 462

 Score = 89.0 bits (219), Expect = 4e-15
 Identities = 77/306 (25%), Positives = 133/306 (43%), Gaps = 28/306 (9%)
 Frame = -1

Query: 836 MEGAIKQLINQRKQLIEVVAVKQEEIRKLTETIQHLASIEPSLQIPXXXXXXXXXXXEAS 657
           ME AIKQL NQ+KQL + +  +++ +  L    + +     +L++               
Sbjct: 1   MEQAIKQLRNQQKQLDQQIEQQKQTLNSLISRREEVTKGIQTLEL---------LSGTTL 51

Query: 656 KPNDDIKEASEPKIIKNGQAQNELDTINK--------------KAQKSNKNKWTVIFDGP 519
            P+  I EA +P + ++ +   E+ T  +               A    K K  VIFDGP
Sbjct: 52  VPDQQIHEALQPAVSESTKGNQEIKTWKQIFDEEHELTREEKIDATVGQKKKAYVIFDGP 111

Query: 518 MSGVYKDWNIAAQFIKGR--NHCSYNTKEEAEEAFRSKYKSVLEKEQVITKPKLTINIPK 345
             G+Y+DW+I    +  +   +  YN+ EEA+ A +  Y  V + ++V  K + T+    
Sbjct: 112 WKGIYQDWHIVKSKVNAQPYRYKGYNSLEEAKLAHKQAYAEVTKADEV--KVEKTMKSFA 169

Query: 344 IQSIKTK---MQVEADLFVNQASYQQHFQTLQTYTEDDRQLGFYPVNKGGPKAVATDAAA 174
             ++  K   +       + +A + ++++ +  +TE+   LGFYP      KAV    A 
Sbjct: 170 KNNVAEKIHGLHKSGPKELTEAEFYRNWKMITEWTEESANLGFYPDCSKQVKAVFFIGAD 229

Query: 173 PVEVYKLFQEGLLAMIYTS---------SITTFRFFPVKFREAIEFYMKSKGHGREIYVR 21
           P  +   +Q GL++ IY           S  T +  P + R   + Y  S    RE Y+ 
Sbjct: 230 PHLLSSFYQSGLISYIYLQEDEGQKGAISKATSQ-LPKELRRTCQQYQLSFAKTREFYLA 288

Query: 20  IHNTTP 3
           I +T P
Sbjct: 289 IQSTYP 294


>ref|YP_001931967.1| replicase [Eupatorium vein clearing virus]
            gi|172041764|gb|ACB69773.1| replicase [Eupatorium vein
            clearing virus]
          Length = 674

 Score = 85.1 bits (209), Expect = 6e-14
 Identities = 43/102 (42%), Positives = 63/102 (61%)
 Frame = -2

Query: 1132 LCKYCSGTFKQAELNYPIHEKETLAALRVIEKWPIELLTQRFELRTDSSYVSTFIRNKQI 953
            +C Y SGTFKQAELNY  +EKE LA +R I+ +P+ L    F +RTD+  +  F+ +K  
Sbjct: 572  ICCYASGTFKQAELNYHSNEKEILAVIRSIQSFPVYLTPVEFIVRTDNKTMEHFLTSKFE 631

Query: 952  QKSNKGRLIRWYQRFNLFNPIIKLVKSENNPFADTLTREWKE 827
              +  GRL+RW   F  +N  ++ +K  +N  AD L+RE+ E
Sbjct: 632  LGTKSGRLVRWQMWFKHYNFKVEHIKGTSNFLADYLSREYNE 673


>gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus]
          Length = 673

 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
 Frame = -2

Query: 1285 KSKLGLNEFGEIINSNLSEDIPNSQNKLQISN--IDIMTDSKLSSQISKYQTILCKYCSG 1112
            K K GL  F ++        +P  ++ L I     D      L +Q ++   ++C+Y SG
Sbjct: 521  KIKKGLVNFPKLY-------LPKKEDSLIIETDASDHFWGGVLKAQTTEGNELICRYSSG 573

Query: 1111 TFKQAELNYPIHEKETLAALRVIEKWPIELLTQRFELRTDS-SYVSTFIRNKQIQKSNKG 935
            TFK AELNY  +EKE LA  +VI K+ I L    F +RTD+ + +  F+  K    S +G
Sbjct: 574  TFKPAELNYHSNEKELLAVKQVITKFSIYLTPVTFTVRTDNVNLLKRFMNTKITGDSKQG 633

Query: 934  RLIRWYQRFNLFNPIIKLVKSENNPFADTLTREWKE 827
            RLIRW    + +   +  +K E N  AD LTRE+++
Sbjct: 634  RLIRWQMWLSHYTFNVNHLKGEKNVLADYLTREYQQ 669