BLASTX nr result

ID: Mentha25_contig00007385 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00007385
         (329 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU19455.1| hypothetical protein MIMGU_mgv1a013552mg [Mimulus...    80   2e-13
ref|XP_004245816.1| PREDICTED: 50S ribosomal protein L19, chloro...    70   3e-10
ref|XP_006359224.1| PREDICTED: 50S ribosomal protein L19-2, chlo...    70   4e-10
ref|XP_004147231.1| PREDICTED: 50S ribosomal protein L19, chloro...    64   2e-08

>gb|EYU19455.1| hypothetical protein MIMGU_mgv1a013552mg [Mimulus guttatus]
          Length = 217

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 55/116 (47%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
 Frame = +1

Query: 1   MSSNILPQTLFMLPKCSAHCQPRNLAFSAAVS-RRPLAGGLASRVLMRPSGFNF----KN 165
           M+S+ L Q LFM+P+ +  C+  NLAFSAAVS RRP  GGL SRV     GF+     KN
Sbjct: 1   MASSFLHQALFMVPRSTFECRSNNLAFSAAVSRRRPCPGGLVSRVPTSSYGFSLSERGKN 60

Query: 166 LSFSVRA--EANPEADVVLXXXXXXXXXXXXLVFSDDKPAYKPRTKLGDIMGILNK 327
            SF V+A  E+N E +V +             V     P   PRTKLGDIMGILNK
Sbjct: 61  WSFVVKAEEESNAEVEVEIEEGGDNVEAEEAEVL----PRAPPRTKLGDIMGILNK 112


>ref|XP_004245816.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Solanum
           lycopersicum]
          Length = 214

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
 Frame = +1

Query: 1   MSSNILPQTLFMLPKCSAHCQ-PRNLAFSAAVSRRPLAGGLASRVLMRPSGF---NFKNL 168
           M S +LPQ LF++P+    C  P+ LAFSA VSRRP    +    L   SG     ++N 
Sbjct: 1   MGSVVLPQALFVVPRNPTRCTAPQKLAFSACVSRRPSQFNVP---LFSASGLLSSKWENR 57

Query: 169 SFSVRAEANPEADVVLXXXXXXXXXXXXLVFSDDKPAYKPRTKLGDIMGILNK 327
           SF VRAEA  + +                V ++++P +KPR KLGDIMGILNK
Sbjct: 58  SFIVRAEAESQEEPEAAEAEVEAEADAA-VATEERPPFKPRAKLGDIMGILNK 109


>ref|XP_006359224.1| PREDICTED: 50S ribosomal protein L19-2, chloroplastic-like [Solanum
           tuberosum]
          Length = 222

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
 Frame = +1

Query: 1   MSSNILPQTLFMLPKCSAHCQ-PRNLAFSAAVSRRPLAGGLASRVLMRPSGFNFKNLSFS 177
           M S +LPQ LF++P+    C  P+ LAFSA VSRRP    ++     R     + + SF 
Sbjct: 1   MGSIVLPQALFVVPRNPTRCTTPQKLAFSACVSRRPSQLNVSLFSASRLLSSKWGSRSFV 60

Query: 178 VRAEAN----PEA---DVVLXXXXXXXXXXXXLVFSDDKPAYKPRTKLGDIMGILNK 327
           VRAEA+    PEA   +                V ++++P +KPR KLGDIMGILNK
Sbjct: 61  VRAEADSQGEPEATETEAPAETEVEAEAEAAVAVATEERPPFKPRAKLGDIMGILNK 117


>ref|XP_004147231.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis
           sativus] gi|449523724|ref|XP_004168873.1| PREDICTED: 50S
           ribosomal protein L19, chloroplastic-like [Cucumis
           sativus]
          Length = 221

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
 Frame = +1

Query: 1   MSSNILPQTLFMLPKCSAHCQPRNLAFSAAVSRRPLAGGLASRVLMRPSGFNFKNL---- 168
           M+S ILPQ +  +P+    C PR L F +AVS   ++    S   +   G +F +     
Sbjct: 1   MASKILPQAVISIPRNPNQCAPRRLGFCSAVSGTRVSFSTLSSSSI---GSHFHHTVAAP 57

Query: 169 ---SFSVRAEANPEADVVLXXXXXXXXXXXXLVFSD-----DKPAYKPRTKLGDIMGILN 324
              +F VRAEANPEAD                V SD     +KP+ KPR KLGD+MGILN
Sbjct: 58  LRRAFVVRAEANPEADSAAEEAPEAEVEAA--VESDAQPEEEKPSRKPRVKLGDVMGILN 115

Query: 325 K 327
           K
Sbjct: 116 K 116


Top