BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00003677
         (606 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   207   2e-51
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   133   3e-29
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   133   3e-29
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   133   3e-29
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   128   1e-27
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   128   1e-27
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   128   1e-27
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   122   8e-26
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              122   8e-26
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     116   6e-24
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   114   3e-23
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   113   4e-23
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   109   7e-22
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   105   8e-21
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   104   2e-20
ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phas...   102   6e-20
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   102   1e-19
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   101   2e-19
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   100   3e-19
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...    99   9e-19

>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  207 bits (527), Expect = 2e-51
 Identities = 123/209 (58%), Positives = 150/209 (71%), Gaps = 8/209 (3%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCLKEDITFQKPLDRQ---LTPASSSHDESED-VDPNQHVDDIELQ 440
           SVL QDQRN+ +PLL LK+D TFQ+  DR+    TPASSS +E  D +DP+Q+ +D++LQ
Sbjct: 56  SVLIQDQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQ 115

Query: 439 LLRRPELWYLLASLRKKETTFPLTAV-SISSKSEESTGLEADHVVTLAREAFSASKKAMW 263
           LLRRPELWYL +SL+KKE  FP T   S+ S +E  TG EA+HV+ LAREAFSA K+A  
Sbjct: 116 LLRRPELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAAS 175

Query: 262 IAKDAGISGINVDDSSSTRGLASDPV--IVRSTRLLERQAKRRRVPKPKVEFLETNHHRK 89
           IA+DA +     D+SSSTR L   PV  IVRS R LERQAKRR  PKP++E  E NH RK
Sbjct: 176 IAEDARL----YDNSSSTRSLVGSPVQRIVRSKRRLERQAKRR-APKPQLEDQEMNHRRK 230

Query: 88  PGSHRKLDSRFDPNDPLRLFLRGPETTEL 2
              H+K    +DPNDPLRLFL GPETT+L
Sbjct: 231 LEPHKKSSEGYDPNDPLRLFLWGPETTQL 259


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530789|gb|ESR41972.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  133 bits (335), Expect = 3e-29
 Identities = 90/208 (43%), Positives = 123/208 (59%), Gaps = 7/208 (3%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNQHVDDIELQLL 434
           SVL Q+QR++ +PLL + KED T Q   D R +   +   +E    D +Q V D+E Q L
Sbjct: 54  SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 113

Query: 433 RRPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIA 257
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A
Sbjct: 114 HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 173

Query: 256 KDAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKP 86
           ++  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK 
Sbjct: 174 ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKA 233

Query: 85  GSHRKLDSRFDPNDPLRLFLRGPETTEL 2
              +KL   FDPNDPLRLFL GPET +L
Sbjct: 234 SVKKKLSEGFDPNDPLRLFLWGPETRKL 261


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530788|gb|ESR41971.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  133 bits (335), Expect = 3e-29
 Identities = 90/208 (43%), Positives = 123/208 (59%), Gaps = 7/208 (3%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNQHVDDIELQLL 434
           SVL Q+QR++ +PLL + KED T Q   D R +   +   +E    D +Q V D+E Q L
Sbjct: 62  SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 121

Query: 433 RRPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIA 257
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A
Sbjct: 122 HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 181

Query: 256 KDAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKP 86
           ++  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK 
Sbjct: 182 ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKA 241

Query: 85  GSHRKLDSRFDPNDPLRLFLRGPETTEL 2
              +KL   FDPNDPLRLFL GPET +L
Sbjct: 242 SVKKKLSEGFDPNDPLRLFLWGPETRKL 269


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530787|gb|ESR41970.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  133 bits (335), Expect = 3e-29
 Identities = 90/208 (43%), Positives = 123/208 (59%), Gaps = 7/208 (3%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNQHVDDIELQLL 434
           SVL Q+QR++ +PLL + KED T Q   D R +   +   +E    D +Q V D+E Q L
Sbjct: 51  SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 110

Query: 433 RRPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIA 257
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A
Sbjct: 111 HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 170

Query: 256 KDAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKP 86
           ++  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK 
Sbjct: 171 ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKA 230

Query: 85  GSHRKLDSRFDPNDPLRLFLRGPETTEL 2
              +KL   FDPNDPLRLFL GPET +L
Sbjct: 231 SVKKKLSEGFDPNDPLRLFLWGPETRKL 258


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X3 [Citrus sinensis]
          Length = 561

 Score =  128 bits (322), Expect = 1e-27
 Identities = 88/208 (42%), Positives = 122/208 (58%), Gaps = 7/208 (3%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNQHVDDIELQLL 434
           SVL Q+QR++ +PLL + KED T Q   D R +   +   +E    D +Q V D+E Q L
Sbjct: 54  SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 113

Query: 433 RRPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIA 257
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A
Sbjct: 114 HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 173

Query: 256 KDAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKP 86
           ++  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK 
Sbjct: 174 ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKA 233

Query: 85  GSHRKLDSRFDPNDPLRLFLRGPETTEL 2
              +KL   FD NDPLRLFL GPET +L
Sbjct: 234 SVKKKLSEGFDRNDPLRLFLWGPETRKL 261


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Citrus sinensis]
          Length = 569

 Score =  128 bits (322), Expect = 1e-27
 Identities = 88/208 (42%), Positives = 122/208 (58%), Gaps = 7/208 (3%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNQHVDDIELQLL 434
           SVL Q+QR++ +PLL + KED T Q   D R +   +   +E    D +Q V D+E Q L
Sbjct: 62  SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 121

Query: 433 RRPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIA 257
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A
Sbjct: 122 HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 181

Query: 256 KDAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKP 86
           ++  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK 
Sbjct: 182 ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKA 241

Query: 85  GSHRKLDSRFDPNDPLRLFLRGPETTEL 2
              +KL   FD NDPLRLFL GPET +L
Sbjct: 242 SVKKKLSEGFDRNDPLRLFLWGPETRKL 269


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X1 [Citrus sinensis]
          Length = 570

 Score =  128 bits (322), Expect = 1e-27
 Identities = 88/208 (42%), Positives = 122/208 (58%), Gaps = 7/208 (3%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNQHVDDIELQLL 434
           SVL Q+QR++ +PLL + KED T Q   D R +   +   +E    D +Q V D+E Q L
Sbjct: 63  SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 122

Query: 433 RRPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIA 257
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A
Sbjct: 123 HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 182

Query: 256 KDAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKP 86
           ++  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK 
Sbjct: 183 ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKA 242

Query: 85  GSHRKLDSRFDPNDPLRLFLRGPETTEL 2
              +KL   FD NDPLRLFL GPET +L
Sbjct: 243 SVKKKLSEGFDRNDPLRLFLWGPETRKL 270


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  122 bits (306), Expect = 8e-26
 Identities = 84/212 (39%), Positives = 129/212 (60%), Gaps = 11/212 (5%)
 Frame = -3

Query: 604 SVLFQDQRND-KPL-LCLKEDITFQKPLDRQLTPASSSHDESEDVDPNQHVDDIELQLLR 431
           SVL Q+QR++ +P    LK++ TFQ  L+++      S DE    D NQ++ + E QLL 
Sbjct: 63  SVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLL 122

Query: 430 RPELWYLLASLRKKETTFPLTAV--SISSKSEESTGLEADHVVTLAREAFSASKKAMWIA 257
           +P LWY L S +  E +   +++  SI++  E S  ++   V+ LA++A SASK+A+ + 
Sbjct: 123 QPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLY 182

Query: 256 KDAGISGINVDDSSS-TRGLASDPVI------VRSTRLLERQAKRRRVPKPKVEFLETNH 98
           ++A + G +++DS S + G  S P +      VRSTRLLER++K+RR   PKV   E + 
Sbjct: 183 ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR--NPKVAVHENHG 240

Query: 97  HRKPGSHRKLDSRFDPNDPLRLFLRGPETTEL 2
            R+    RK++  +DP DPLRLFL GPET +L
Sbjct: 241 SRRAEVQRKINEGYDPKDPLRLFLWGPETRKL 272


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  122 bits (306), Expect = 8e-26
 Identities = 84/212 (39%), Positives = 129/212 (60%), Gaps = 11/212 (5%)
 Frame = -3

Query: 604 SVLFQDQRND-KPL-LCLKEDITFQKPLDRQLTPASSSHDESEDVDPNQHVDDIELQLLR 431
           SVL Q+QR++ +P    LK++ TFQ  L+++      S DE    D NQ++ + E QLL 
Sbjct: 52  SVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLL 111

Query: 430 RPELWYLLASLRKKETTFPLTAV--SISSKSEESTGLEADHVVTLAREAFSASKKAMWIA 257
           +P LWY L S +  E +   +++  SI++  E S  ++   V+ LA++A SASK+A+ + 
Sbjct: 112 QPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLY 171

Query: 256 KDAGISGINVDDSSS-TRGLASDPVI------VRSTRLLERQAKRRRVPKPKVEFLETNH 98
           ++A + G +++DS S + G  S P +      VRSTRLLER++K+RR   PKV   E + 
Sbjct: 172 ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR--NPKVAVHENHG 229

Query: 97  HRKPGSHRKLDSRFDPNDPLRLFLRGPETTEL 2
            R+    RK++  +DP DPLRLFL GPET +L
Sbjct: 230 SRRAEVQRKINEGYDPKDPLRLFLWGPETRKL 261


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  116 bits (290), Expect = 6e-24
 Identities = 76/204 (37%), Positives = 114/204 (55%), Gaps = 3/204 (1%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDPNQHVDDIELQLLR 431
           SVL Q+QR++ KPLL + KED T Q  L+R+   + +   E    D NQ V + E   + 
Sbjct: 55  SVLLQEQRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDTLEDYNQFVWEFERPSVH 114

Query: 430 RPELWYLLASLRKK-ETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 254
            P  W++L SL+ K + +  LT  +      +   +E    + LA++A  ASK+A  +A+
Sbjct: 115 WPGFWHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAE 174

Query: 253 DAGISGINVDDSSSTRGLASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHR 74
           ++ + G + DD  S   L      VRSTRLLER++KRR+VP+  V F E   +R     +
Sbjct: 175 ESKLVGTDSDDMLSVSFLGKGDKTVRSTRLLERRSKRRKVPESSVLFYENPRNRAADIRK 234

Query: 73  KLDSRFDPNDPLRLFLRGPETTEL 2
           +L    + +DPLRLFL GPET +L
Sbjct: 235 RLSEGLNSDDPLRLFLAGPETRQL 258


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
           gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
           rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  114 bits (284), Expect = 3e-23
 Identities = 87/216 (40%), Positives = 127/216 (58%), Gaps = 15/216 (6%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL---KEDITFQKPLDRQLTPASSSHDESEDVDPNQHVDDIELQL 437
           SVL Q+QR+D +PL  L   KED  +    D+Q     +S +E E+   N      E +L
Sbjct: 58  SVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNE-ENASNNFGQLGFEKKL 116

Query: 436 LRRPELWYLLASLRKKETTFPLTAV-SISSKSEESTGLEADHVVTLAREAFSASKKAMWI 260
           L+ P+L  LL+ L  +E     + + S+++ ++E   +E  ++V LA++A SASK+A  +
Sbjct: 117 LQWPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASL 176

Query: 259 AKDAGISGINVDDS-SSTRGLAS---------DPVIVRSTRLLERQAKRRRVPKPKVEFL 110
           ++D  +   ++DDS S++ G A+         + V VRSTR LERQ+KRRRV +PKV   
Sbjct: 177 SEDLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRV-QPKVTIR 232

Query: 109 ETNHHRKPGSHRKLDSRFDPNDPLRLFLRGPETTEL 2
           ET   R+    RKL   FDPNDPLRLFL GPET +L
Sbjct: 233 ETYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQL 268


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
           gi|462400636|gb|EMJ06193.1| hypothetical protein
           PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  113 bits (283), Expect = 4e-23
 Identities = 82/210 (39%), Positives = 121/210 (57%), Gaps = 9/210 (4%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLL-CLKEDITFQKPLDR-QLTPASSSHDESEDVDPNQHVDDIELQLL 434
           SVL Q+QR++ KPLL  LKED T +  LDR Q+   +S H++ +  D    V+  + QLL
Sbjct: 59  SVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLL 118

Query: 433 RRPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 254
               L    +     + + PLT  S+++ S +   +E  +VV LA++A SAS++A  +A+
Sbjct: 119 NHDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAE 178

Query: 253 DAGISGINVDD---SSSTRGLASDPVIVRSTRLLERQAKR---RRVPKPKVEFLETNHHR 92
           D+   G + DD   +S    +  +   VRSTR+LER+ KR   R+VPK KV   E+N   
Sbjct: 179 DSQSMGADFDDLGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFT 238

Query: 91  KPGSHRKLDSRFDPNDPLRLFLRGPETTEL 2
                +K+   F+PNDPLRLFL GPET +L
Sbjct: 239 GSDVRKKISEGFNPNDPLRLFLWGPETRQL 268


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
           max]
          Length = 574

 Score =  109 bits (272), Expect = 7e-22
 Identities = 87/218 (39%), Positives = 116/218 (53%), Gaps = 17/218 (7%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDPNQHVDDIELQLLR 431
           SVL Q+QR++ +PLL + KED T Q  L  +       H+E+   + +Q V D    L  
Sbjct: 59  SVLLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKHLHY 118

Query: 430 RPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 251
            P L  LLAS +  E +   T   +SS  +  T     + V+LA++A S SK+   + +D
Sbjct: 119 WPHLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVED 178

Query: 250 AGISGINVDDSSSTRGLAS----DPVI-----VRSTRLLERQAKRRRVPKPKVEFLETNH 98
             +  I  DD S   GLAS    DP I     VRSTRLLER++K+R+VPK KV   ET  
Sbjct: 179 --LKSIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYL 236

Query: 97  HRKPGSHRKL------DSRFDPNDPLRLFLRGPETTEL 2
            RK  +H KL      +   D NDPL  FLRGPET +L
Sbjct: 237 ARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQL 274


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Solanum tuberosum]
          Length = 562

 Score =  105 bits (263), Expect = 8e-21
 Identities = 75/208 (36%), Positives = 114/208 (54%), Gaps = 11/208 (5%)
 Frame = -3

Query: 592 QDQRNDKPLLCLKEDITFQKPLDRQLTPASSSH-DESEDVDPNQHVDDIELQLLRRPELW 416
           Q   N   L  +KE+ T    +DR+L  A+SS  +E++ VD  Q+++ +++QLLR P   
Sbjct: 60  QQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGPS 119

Query: 415 YLLAS--LRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDAGI 242
           Y      L+ K    P     + SK ++    E   VV LAR+A  AS++A  +A+D+ +
Sbjct: 120 YSFPPYYLKGKGPLSP-NKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAEDSKL 178

Query: 241 SGINVDDSSSTRGLASDPV--------IVRSTRLLERQAKRRRVPKPKVEFLETNHHRKP 86
               +DDS+    L+++ V         VRSTR  ERQ+++R  PKP  +  ETN   +P
Sbjct: 179 ----LDDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRP 234

Query: 85  GSHRKLDSRFDPNDPLRLFLRGPETTEL 2
              RK++   D NDPLR+FL GPET +L
Sbjct: 235 DVRRKVNESIDLNDPLRMFLWGPETKQL 262


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 548

 Score =  104 bits (260), Expect = 2e-20
 Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 12/213 (5%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLD-RQLTPASSSHDESEDVDPNQHVDDIELQLL 434
           SVL Q+QR++ +PLL + KED TFQ  +D +Q+ P +S        D      D+  QL+
Sbjct: 61  SVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTS--------DQEGICSDVLDQLI 112

Query: 433 RRPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 254
               L            ++ LT  SI++ ++E   +E  +V+ LAR+A SASK+A  +A+
Sbjct: 113 LHSNL------------SWSLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQ 160

Query: 253 DAGISGINVDDSSSTRGLASDPV---------IVRSTRLLERQAKRRRVPKPKVEFLETN 101
                  N+DD+ ST GL    +          VRSTR LERQ+K RRV K K  F E  
Sbjct: 161 KCA----NLDDTVST-GLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPY 215

Query: 100 HHRKPGSHRKLDSRFDPNDPLRLFLRGPETTEL 2
             R+ G  +K++  FDP DPLRLFL GPET +L
Sbjct: 216 SSRRAGVQKKINEGFDPKDPLRLFLWGPETKQL 248


>ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phaseolus vulgaris]
           gi|561017549|gb|ESW16353.1| hypothetical protein
           PHAVU_007G149600g [Phaseolus vulgaris]
          Length = 582

 Score =  102 bits (255), Expect = 6e-20
 Identities = 83/218 (38%), Positives = 117/218 (53%), Gaps = 17/218 (7%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDPNQHVDDIELQLLR 431
           SVL Q+QR++ +PLL + KED T Q  L+ +     + H+E+   + +Q V D    L  
Sbjct: 67  SVLLQEQRDEYRPLLHMSKEDKTSQAILNTRQMDMDTVHEENNTGNADQIVLDFRKHLHL 126

Query: 430 RPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 251
            P L  LL S +  E     T   +S  SE  T     + V+LA++A S +K+   + + 
Sbjct: 127 WPRLQNLLNSSQTGEIAASSTLQHVSVDSERRTDGVQCNGVSLAKKALSTAKQTSSVVE- 185

Query: 250 AGISGINVDDSSSTRGLAS----DPVI-----VRSTRLLERQAKRRRVPKPKVEFLETNH 98
            G+  I  DD S   GLAS    DP +     VRSTRLLER+AK+R+V K  V+  ET  
Sbjct: 186 -GLKSIKADDDSIPFGLASTGLADPSVGRNKTVRSTRLLERRAKQRKVSKSIVKDDETYL 244

Query: 97  HRKPGSH------RKLDSRFDPNDPLRLFLRGPETTEL 2
            RK  +       +K++  FD ND LR+FLRGPET +L
Sbjct: 245 TRKDDAQERIRKEKKINEEFDQNDTLRMFLRGPETKQL 282


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Glycine max]
          Length = 575

 Score =  102 bits (253), Expect = 1e-19
 Identities = 84/218 (38%), Positives = 113/218 (51%), Gaps = 17/218 (7%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDPNQHVDDIELQLLR 431
           SVL  +QR++ +PLL + KED T Q  L  +     + H+E+   + +Q V D    L  
Sbjct: 60  SVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHH 119

Query: 430 RPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 251
            P L YLL S +  E     T   +S   E        + V+LA++A S SK+   + +D
Sbjct: 120 WPNLQYLLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVED 179

Query: 250 AGISGINVDDSSSTRGLAS----DPVI-----VRSTRLLERQAKRRRVPKPKVEFLETNH 98
             +  I  DD S   GLAS    DP I     VRSTRLLER++K+R+VPK KV   ET  
Sbjct: 180 --LKSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYL 237

Query: 97  HRKPGSHRKL------DSRFDPNDPLRLFLRGPETTEL 2
            RK  +  KL      +   D +DPLRLFL GPET +L
Sbjct: 238 ARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQL 275


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Solanum lycopersicum]
          Length = 563

 Score =  101 bits (251), Expect = 2e-19
 Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 12/209 (5%)
 Frame = -3

Query: 592 QDQRNDKPLLCLKEDITFQKPLDRQLTPASSSH-DESEDVDPNQHVDDIELQLLRRPELW 416
           Q   N   L  +KE+ T    +DR+L  A+SS  +E++ VD  Q+++ +++QLL  P   
Sbjct: 60  QHFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPS 119

Query: 415 YLLAS--LRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDAGI 242
           Y      L+ K    P     + SK ++    E   VV LAR+A  ASK+A  +A+D+ +
Sbjct: 120 YSFPPYYLKGKGPLSP-NKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDSKL 178

Query: 241 SGINVDDSSSTRGLASDPV--------IVRSTRLLERQAKRRRVPKPKVEFLETNHHR-K 89
               +DDS     L++  V         VRSTR +ERQ+++R  PKP  E  ETN+   +
Sbjct: 179 ----LDDSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGR 234

Query: 88  PGSHRKLDSRFDPNDPLRLFLRGPETTEL 2
           P   RK++   D NDPLR+FL GPET +L
Sbjct: 235 PDVRRKVNESIDLNDPLRMFLWGPETKQL 263


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
           PREDICTED: RNA polymerase sigma factor sigF,
           chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  100 bits (249), Expect = 3e-19
 Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 1/187 (0%)
 Frame = -3

Query: 559 LKEDITFQKPLDRQLTPASSSHDESEDVDPNQHVDDIELQLLRRPELWYLLASLRKKETT 380
           LK+D + Q  L+R+L   S   DE    D +  + +++ Q +  P L      ++ +E  
Sbjct: 76  LKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWPGLLSSWPPVQMEEYK 135

Query: 379 FP-LTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTRG 203
              +   S ++  E     E ++V+ LA++A SASK+A  +  +  + G ++D SS    
Sbjct: 136 ISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDETELVGTSLDYSSLDDS 195

Query: 202 LASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFLR 23
           L+ +   VRSTRL +R++K+R+VPK      E ++ R   S RK   +FDPNDPLRLFL 
Sbjct: 196 LSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLW 255

Query: 22  GPETTEL 2
           GPET +L
Sbjct: 256 GPETKKL 262


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
           gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
           FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score = 99.0 bits (245), Expect = 9e-19
 Identities = 77/204 (37%), Positives = 102/204 (50%), Gaps = 3/204 (1%)
 Frame = -3

Query: 604 SVLFQDQRND-KPLLCL-KEDITFQKPLDRQLTPASSSHDESEDVDP-NQHVDDIELQLL 434
           SVL Q+QR++ +PL  + KED   Q  LDR+ T   +S  E +D D  +Q V++ E QL 
Sbjct: 54  SVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLH 113

Query: 433 RRPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 254
             P  W L   L   E T                     +V+ LA+ A SASK A ++A 
Sbjct: 114 HWPAYWNLTDKLIDVEPT---------------------NVINLAKRALSASKHAAFLA- 151

Query: 253 DAGISGINVDDSSSTRGLASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHR 74
           D      N+  +SS+     +  IVRS R L RQ+  RR PK K    ET   +     +
Sbjct: 152 DNNTDLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQK 211

Query: 73  KLDSRFDPNDPLRLFLRGPETTEL 2
           +L   FDPNDPLRLFL GPET +L
Sbjct: 212 RLSQGFDPNDPLRLFLWGPETKQL 235