BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00000966
         (1058 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU39326.1| hypothetical protein MIMGU_mgv1a008161mg [Mimulus...   345   2e-92
ref|XP_004240730.1| PREDICTED: DNA-directed RNA polymerase III s...   342   2e-91
ref|XP_006363319.1| PREDICTED: DNA-directed RNA polymerase III s...   341   3e-91
emb|CBI22720.3| unnamed protein product [Vitis vinifera]              297   6e-78
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   294   5e-77
ref|XP_007038704.1| RNA polymerase III subunit RPC82 family prot...   282   1e-73
ref|XP_006421933.1| hypothetical protein CICLE_v10004721mg [Citr...   282   2e-73
ref|XP_004168254.1| PREDICTED: DNA-directed RNA polymerase III s...   266   8e-69
ref|XP_004140835.1| PREDICTED: DNA-directed RNA polymerase III s...   266   8e-69
ref|XP_006490400.1| PREDICTED: DNA-directed RNA polymerase III s...   266   1e-68
gb|EXC19135.1| DNA-directed RNA polymerase III subunit RPC3 [Mor...   255   2e-65
ref|XP_002872419.1| RNA polymerase III subunit RPC82 family prot...   251   3e-64
ref|XP_007219003.1| hypothetical protein PRUPE_ppa004195mg [Prun...   251   5e-64
emb|CBI26210.3| unnamed protein product [Vitis vinifera]              250   8e-64
ref|XP_002875937.1| RNA polymerase III subunit RPC82 family prot...   249   1e-63
ref|XP_007143425.1| hypothetical protein PHAVU_007G071300g [Phas...   246   2e-62
ref|XP_004308082.1| PREDICTED: DNA-directed RNA polymerase III s...   244   4e-62
ref|NP_566914.1| RNA polymerase III subunit RPC82 family protein...   243   7e-62
gb|AAM62793.1| RNA polymerase III subunit-like protein [Arabidop...   243   7e-62
ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III s...   241   4e-61

>gb|EYU39326.1| hypothetical protein MIMGU_mgv1a008161mg [Mimulus guttatus]
          Length = 383

 Score =  345 bits (884), Expect = 2e-92
 Identities = 190/367 (51%), Positives = 254/367 (69%), Gaps = 17/367 (4%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVEQKTIEQRALAAAAPMESVRF 183
            +L++AR+VE CPAP P L P  V+E   KK+       VE+  ++QR LAAAAPMES+RF
Sbjct: 22   KLVNARFVEHCPAPDPHLEPPVVDEKGKKKKTQ-----VEEPPLDQRVLAAAAPMESMRF 76

Query: 184  LMEMDDIXXXXXXXXXXXPILGRKRKKDA--LDSD-----------EDVLDR---KXXXX 315
             +EMDD               G+KRK+D   LD+D           E+ L R   K    
Sbjct: 77   FLEMDDHSEEKGNETTTSVRSGQKRKQDEGELDADKKKEVLWRVNVEEFLRRLRHKACIA 136

Query: 316  YVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDLERVK 495
            +VK+ IN EA+IVLSA+L+LS +SE+   AEKS YLS+N IYDEVIK++GG+GMD ERV+
Sbjct: 137  HVKSKINEEAAIVLSAMLELSKQSESGLKAEKSEYLSINAIYDEVIKKEGGLGMDFERVR 196

Query: 496  TSLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLSKAGRY 675
            + L QLGC+TLST +DESY IDIK II+ +QNEEVES++++RYG EAYRI+R LSKAGR 
Sbjct: 197  SLLDQLGCETLSTGMDESYCIDIKEIIELSQNEEVESLVMRRYGPEAYRIYRLLSKAGRL 256

Query: 676  VETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQHFRERFL 855
            +ET+KIS++TFVEKK T  IL++LWKD++L M+    +  +   F +W ++++  +++ L
Sbjct: 257  METEKISDSTFVEKKATIAILYKLWKDDFLQMEHVKTSTAKQSDFRLWTINKEQLQKQVL 316

Query: 856  DEMYHAVLNLRLRITHEQDQRKEVLQLPKDKL-EPLRDKLKVYRIVRTTLERSLMDLDDA 1032
            +EMYHA LNL+LRI HE+DQ KEV++LPKDKL      K   +  V   LE  LMDLDDA
Sbjct: 317  NEMYHAALNLKLRIAHEKDQAKEVIKLPKDKLVGESNTKYVRWANVTRILESCLMDLDDA 376

Query: 1033 VVLFHHF 1053
            ++LFHHF
Sbjct: 377  IMLFHHF 383


>ref|XP_004240730.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc3-like [Solanum
            lycopersicum]
          Length = 525

 Score =  342 bits (876), Expect = 2e-91
 Identities = 196/374 (52%), Positives = 254/374 (67%), Gaps = 24/374 (6%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVEQKTIEQRALAAAAPMESVRF 183
            RL++AR+VERCPAP P L P A EE  AKKRG  SAKI  Q T+EQ+ALAAAAPMES+RF
Sbjct: 155  RLVNARFVERCPAPDPLLEPPAEEETAAKKRGAKSAKIQAQ-TMEQQALAAAAPMESMRF 213

Query: 184  LMEM---DDIXXXXXXXXXXXPILGRKRKKDALDS--------DEDVLDR---------- 300
            L+E    D +              G KRK++ L+S        +++VL R          
Sbjct: 214  LVENIWNDSVEKADKRTTDVK--CGMKRKQEDLESNTKDPATGEKEVLWRANFEEFIRRL 271

Query: 301  --KXXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVG 474
              K     VK  +NN+A+IVL+A L+LS  SET+   + S   S+N IYDEVIK++GG+G
Sbjct: 272  RHKACVANVKVRVNNDAAIVLAATLELSRHSETKLRIDNSVPQSINAIYDEVIKREGGLG 331

Query: 475  MDLERVKTSLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRR 654
            MDLER++ SL  LGC+    +IDE+YS+D+K+II++A+ EEVES++LKRYG EAYR+FR 
Sbjct: 332  MDLERIRASLDDLGCEAPLMEIDETYSVDLKNIIEQARIEEVESIVLKRYGREAYRMFRL 391

Query: 655  LSKAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQ 834
            LSKA R VETDKIS+ TFVEKK   KILF+LWKD+YL M+  +  A +   F +WK+++Q
Sbjct: 392  LSKADRLVETDKISDTTFVEKKDAVKILFKLWKDDYLEMKKVIARAPKQSEFILWKINKQ 451

Query: 835  HFRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDKL-EPLRDKLKVYRIVRTTLERS 1011
               E  LDEMYHA LNLRLR THE++Q KE+LQ+PKDKL   L +K    R V   LE S
Sbjct: 452  SLWEHILDEMYHAALNLRLRTTHEKEQEKEILQMPKDKLVGELGNKYMRLRKVCIVLESS 511

Query: 1012 LMDLDDAVVLFHHF 1053
            LM+LDD+++LFH F
Sbjct: 512  LMNLDDSLMLFHDF 525


>ref|XP_006363319.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc3-like [Solanum
            tuberosum]
          Length = 525

 Score =  341 bits (874), Expect = 3e-91
 Identities = 196/373 (52%), Positives = 253/373 (67%), Gaps = 24/373 (6%)
 Frame = +1

Query: 7    LLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVEQKTIEQRALAAAAPMESVRFL 186
            L++AR+VERCPAP P L P A EE  AKKRG  SAKI  Q T+EQ+ALAAAAPMES+RFL
Sbjct: 156  LVNARFVERCPAPDPLLEPPAAEETAAKKRGAKSAKIQAQ-TMEQQALAAAAPMESMRFL 214

Query: 187  MEMDDIXXXXXXXXXXXPI---LGRKRKKDALDSD--------EDVLDR----------- 300
            +E  DI                 G KRK+  L+S+        ++VL R           
Sbjct: 215  VE--DIWNDSVERADKRTTDVKCGMKRKQGDLESNTKDSATGKKEVLWRANFEEFIRRLR 272

Query: 301  -KXXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGM 477
             K     VK  +NN+A++VL+A L+LS  SET+   + S   S+N IYDEVIK++GG+GM
Sbjct: 273  HKACVANVKVRVNNDAAVVLAATLELSRHSETKLRIDNSVPQSINAIYDEVIKREGGLGM 332

Query: 478  DLERVKTSLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRL 657
            DLER++ SL  LGC+    +IDE+YS+D+K+II++A+ EEVES++LKRYG EAYR+FR L
Sbjct: 333  DLERIRASLDDLGCEAPLMEIDETYSVDLKNIIEQARIEEVESIVLKRYGREAYRMFRLL 392

Query: 658  SKAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQH 837
            SKA R VETDKIS+ TFVEKK   KILF+LWKD+YL M+  +  A +   F +WK+++Q 
Sbjct: 393  SKADRLVETDKISDTTFVEKKDAVKILFKLWKDDYLEMKKVIARAAKQSEFILWKINKQS 452

Query: 838  FRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDKL-EPLRDKLKVYRIVRTTLERSL 1014
              E  LDEMYHA LNLRLRITHE++Q KE+LQ+PKDKL   L +K    R V   LE SL
Sbjct: 453  LWEHILDEMYHAALNLRLRITHEKEQEKEILQMPKDKLVGELGNKYMRLRKVCIVLESSL 512

Query: 1015 MDLDDAVVLFHHF 1053
            M+LDD+++LFH F
Sbjct: 513  MNLDDSLMLFHDF 525


>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  297 bits (760), Expect = 6e-78
 Identities = 172/372 (46%), Positives = 237/372 (63%), Gaps = 22/372 (5%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVEQ-KTIEQRALAAAAPMESVR 180
            +L+ A +VERCPA  P L+P + EE PA+KRG  SAK+VE+ +TIEQRA+AAAAPM++ R
Sbjct: 156  KLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKR 215

Query: 181  FLMEMDDIXXXXXXXXXXXPILGRKRKKDALDSDEDV--------------------LDR 300
            F +    I              G KRK+DAL+ D++                     L  
Sbjct: 216  FSVI---INTGTDVDDSPNVTAGEKRKQDALELDKETGASCEKDVLWRANFEEFVRCLRH 272

Query: 301  KXXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMD 480
            K     VKT +++ A+IVLSA+L+ +   E +   E S  LS++ I++ V+K + G  M 
Sbjct: 273  KACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMT 332

Query: 481  LERVKTSLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLS 660
            LERV+ SL QLGC        ESYS+D+K+II+ AQN+EVES+ LKRYG +AYRIFR LS
Sbjct: 333  LERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLS 392

Query: 661  KAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQHF 840
            K+ R +ETDKIS+ TFVEKK TAKIL+QLWKDEYL M+    + +R   F +WKV +   
Sbjct: 393  KSCRLLETDKISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTL 452

Query: 841  RERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDK-LEPLRDKLKVYRIVRTTLERSLM 1017
                L+EMYH+ LNL LR+ +E +Q +E++QLP++K +  L ++ +  R VR  LE SLM
Sbjct: 453  WGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLM 512

Query: 1018 DLDDAVVLFHHF 1053
             LDDA++LF+ F
Sbjct: 513  KLDDAIMLFNDF 524


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
            vinifera]
          Length = 511

 Score =  294 bits (752), Expect = 5e-77
 Identities = 171/363 (47%), Positives = 237/363 (65%), Gaps = 13/363 (3%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVEQ-KTIEQRALAAAAPMESVR 180
            +L+ A +VERCPA  P L+P + EE PA+KRG  SAK+VE+ +TIEQRA+AAAAPM++ R
Sbjct: 149  KLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKR 208

Query: 181  FLM------EMDDIXXXXXXXXXXXPILGRKRKKDAL---DSDEDV--LDRKXXXXYVKT 327
            F +      ++DD               G   +KD L   + +E V  L  K     VKT
Sbjct: 209  FSVIINTGTDVDDSPNRKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKT 268

Query: 328  TINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDLERVKTSLY 507
             +++ A+IVLSA+L+ +   E +   E S  LS++ I++ V+K + G  M LERV+ SL 
Sbjct: 269  RLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLI 328

Query: 508  QLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLSKAGRYVETD 687
            QLGC        ESYS+D+K+II+ AQN+EVES+ LKRYG +AYRIFR LSK+ R +ETD
Sbjct: 329  QLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETD 388

Query: 688  KISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQHFRERFLDEMY 867
            KIS+ TFVEKK TAKIL+QLWKDEYL M+    + +R   F +WKV +       L+EMY
Sbjct: 389  KISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMY 448

Query: 868  HAVLNLRLRITHEQDQRKEVLQLPKDK-LEPLRDKLKVYRIVRTTLERSLMDLDDAVVLF 1044
            H+ LNL LR+ +E +Q +E++QLP++K +  L ++ +  R VR  LE SLM LDDA++LF
Sbjct: 449  HSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLF 508

Query: 1045 HHF 1053
            + F
Sbjct: 509  NDF 511


>ref|XP_007038704.1| RNA polymerase III subunit RPC82 family protein, putative isoform 1
            [Theobroma cacao] gi|508775949|gb|EOY23205.1| RNA
            polymerase III subunit RPC82 family protein, putative
            isoform 1 [Theobroma cacao]
          Length = 523

 Score =  282 bits (722), Expect = 1e-73
 Identities = 167/374 (44%), Positives = 223/374 (59%), Gaps = 24/374 (6%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVEQK-TIEQRALAAAAPMESVR 180
            +LL+A +VERCPA  P L+    EE  A+KR   SAKI+E K T+EQR L AA P E++R
Sbjct: 156  KLLNAHFVERCPAAEPVLTKPTEEETSARKRVPKSAKILEGKETLEQRVLEAATPSEALR 215

Query: 181  FLMEMDD---IXXXXXXXXXXXPILGRKRKKDALDS-------DEDV------------- 291
            FL+                     +G+KRK DAL+S       DE V             
Sbjct: 216  FLLVTRTEPAADGGKDENNSSSMTVGKKRKLDALESETEGEATDEQVVLWRANFEEFIRR 275

Query: 292  LDRKXXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGV 471
            L  K     V+  +++ A IV+SA+L+ +  +E +   E S  LS+N IY+EVIK + G 
Sbjct: 276  LRHKAFIENVRACLDDGAVIVISAMLEATRTAEKKVKTENSVPLSLNSIYEEVIKSEEGR 335

Query: 472  GMDLERVKTSLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFR 651
             +  +RV+ SL QL C      ++ESYSID K II+ AQN+EVES++LKRYG +AYR+FR
Sbjct: 336  NITFDRVRASLVQLSCPPFVKAVNESYSIDFKKIIELAQNDEVESIVLKRYGRDAYRMFR 395

Query: 652  RLSKAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQ 831
             LS   R +ETDKI++  FVEKK T KIL++LWKD+YLHM+       R   F +WKV++
Sbjct: 396  LLSSTARLLETDKIADTAFVEKKDTTKILYKLWKDDYLHMEKLQLTGARQSQFLLWKVNK 455

Query: 832  QHFRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDKLEPLRDKLKVYRIVRTTLERS 1011
                E  LDEM+HA LNL LR+ HE +Q KE+L LP+DK      ++   R VR  LE S
Sbjct: 456  NTLWEHVLDEMFHAALNLSLRVAHELEQEKELLNLPQDK------RVNRLRKVRLLLESS 509

Query: 1012 LMDLDDAVVLFHHF 1053
             M LDDA++LFH F
Sbjct: 510  QMKLDDAIMLFHDF 523


>ref|XP_006421933.1| hypothetical protein CICLE_v10004721mg [Citrus clementina]
            gi|568874593|ref|XP_006490399.1| PREDICTED: DNA-directed
            RNA polymerase III subunit RPC3-like isoform X1 [Citrus
            sinensis] gi|557523806|gb|ESR35173.1| hypothetical
            protein CICLE_v10004721mg [Citrus clementina]
          Length = 527

 Score =  282 bits (721), Expect = 2e-73
 Identities = 168/374 (44%), Positives = 229/374 (61%), Gaps = 24/374 (6%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAK-IVEQKTIEQRALAAAAPMESVR 180
            +L++A YVERCPA  P L P + EE PA+K+G+ SAK I E +TIEQ+ + AA PME++R
Sbjct: 156  KLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMR 215

Query: 181  FLMEMD---DIXXXXXXXXXXXPILGRKRKKDALDSDE-------------------DVL 294
            F +  +   D+           P  G KRK D L+ DE                     L
Sbjct: 216  FSVVTNVESDVGEKEKNSNNVTP--GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRL 273

Query: 295  DRKXXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVG 474
              K    +V+  +++ A+ VLSA+L  +  +E +   + S  LS++ IY+EVIK + G  
Sbjct: 274  RHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRN 333

Query: 475  MDLERVKTSLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRR 654
            M L+ V+ SL QLG  +      +SYSID + II+ AQNEEVES++ KRYG +AYRIFR 
Sbjct: 334  MTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRL 393

Query: 655  LSKAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQ 834
            LSK+GR +ETDKIS+ TFVEKK   KIL++LWKD YL M+  +    R   F +WKV++Q
Sbjct: 394  LSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 453

Query: 835  HFRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDK-LEPLRDKLKVYRIVRTTLERS 1011
               +  LDEM+HA LNL LR+++E D+ KE+L LP DK   PL+D+    R VR  LE S
Sbjct: 454  ILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESS 513

Query: 1012 LMDLDDAVVLFHHF 1053
             M LDDA++LFH F
Sbjct: 514  QMKLDDAILLFHDF 527


>ref|XP_004168254.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Cucumis
            sativus]
          Length = 518

 Score =  266 bits (681), Expect = 8e-69
 Identities = 160/372 (43%), Positives = 225/372 (60%), Gaps = 22/372 (5%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVE-QKTIEQRALAAAAPMESVR 180
            +LL+A +VERCPAP P+LSP  VEEPP +KRG  +AKI E  +T+EQR + AA P+E +R
Sbjct: 150  KLLNAHFVERCPAPEPTLSPK-VEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLR 208

Query: 181  FLMEMDDIXXXXXXXXXXXPILGRKRKKDALDSDED-------------------VLDRK 303
            F   M D             I G+KRK D L+  +D                    L  K
Sbjct: 209  F--SMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHK 266

Query: 304  XXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDL 483
                +V++  ++    VLSA+L+ +  SE     E +  LS+++IY+EV+K + G  M L
Sbjct: 267  ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 326

Query: 484  ERVKTSLYQLGCQTLST-DIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLS 660
            +RV+ SL  LGC  +    I    ++D   II++AQ +EVES++LKRYG +AYR+FR LS
Sbjct: 327  DRVEASLAALGCPGIDDYKISMFTTVDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLS 386

Query: 661  KAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQHF 840
            K G  VET+KIS+++FV+K    KIL++LWKDEYL+M+       R     +W+VD+ + 
Sbjct: 387  KTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNL 446

Query: 841  RERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKD-KLEPLRDKLKVYRIVRTTLERSLM 1017
             E  LDEMYHA LNL+LR+ HE ++ KE+L LPKD   +PL  K+  +  VR  L  SL+
Sbjct: 447  WEHVLDEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLV 506

Query: 1018 DLDDAVVLFHHF 1053
             LDDA++LFH F
Sbjct: 507  KLDDALMLFHDF 518


>ref|XP_004140835.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Cucumis
            sativus]
          Length = 518

 Score =  266 bits (681), Expect = 8e-69
 Identities = 160/372 (43%), Positives = 225/372 (60%), Gaps = 22/372 (5%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVE-QKTIEQRALAAAAPMESVR 180
            +LL+A +VERCPAP P+LSP  VEEPP +KRG  +AKI E  +T+EQR + AA P+E +R
Sbjct: 150  KLLNAHFVERCPAPEPTLSPK-VEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLR 208

Query: 181  FLMEMDDIXXXXXXXXXXXPILGRKRKKDALDSDED-------------------VLDRK 303
            F   M D             I G+KRK D L+  +D                    L  K
Sbjct: 209  F--SMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHK 266

Query: 304  XXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDL 483
                +V++  ++    VLSA+L+ +  SE     E +  LS+++IY+EV+K + G  M L
Sbjct: 267  ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 326

Query: 484  ERVKTSLYQLGCQTLST-DIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLS 660
            +RV+ SL  LGC  +    I    ++D   II++AQ +EVES++LKRYG +AYR+FR LS
Sbjct: 327  DRVEASLAALGCPGMDDYKISMFTTVDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLS 386

Query: 661  KAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQHF 840
            K G  VET+KIS+++FV+K    KIL++LWKDEYL+M+       R     +W+VD+ + 
Sbjct: 387  KTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNL 446

Query: 841  RERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKD-KLEPLRDKLKVYRIVRTTLERSLM 1017
             E  LDEMYHA LNL+LR+ HE ++ KE+L LPKD   +PL  K+  +  VR  L  SL+
Sbjct: 447  WEHVLDEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLV 506

Query: 1018 DLDDAVVLFHHF 1053
             LDDA++LFH F
Sbjct: 507  KLDDALMLFHDF 518


>ref|XP_006490400.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like isoform
            X2 [Citrus sinensis]
          Length = 512

 Score =  266 bits (680), Expect = 1e-68
 Identities = 163/374 (43%), Positives = 222/374 (59%), Gaps = 24/374 (6%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAK-IVEQKTIEQRALAAAAPMESVR 180
            +L++A YVERCPA  P L P + EE PA+K+G+ SAK I E +TIEQ+ + AA PME++R
Sbjct: 156  KLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMR 215

Query: 181  FLMEMD---DIXXXXXXXXXXXPILGRKRKKDALDSDE-------------------DVL 294
            F +  +   D+           P  G KRK D L+ DE                     L
Sbjct: 216  FSVVTNVESDVGEKEKNSNNVTP--GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRL 273

Query: 295  DRKXXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVG 474
              K    +V+  +++ A+ VLSA+L  +  +E +   + S  LS++ IY+EVIK + G  
Sbjct: 274  RHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRN 333

Query: 475  MDLERVKTSLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRR 654
            M L+ V+ SL QL               D + II+ AQNEEVES++ KRYG +AYRIFR 
Sbjct: 334  MTLDHVRASLVQL---------------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRL 378

Query: 655  LSKAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQ 834
            LSK+GR +ETDKIS+ TFVEKK   KIL++LWKD YL M+  +    R   F +WKV++Q
Sbjct: 379  LSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 438

Query: 835  HFRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDK-LEPLRDKLKVYRIVRTTLERS 1011
               +  LDEM+HA LNL LR+++E D+ KE+L LP DK   PL+D+    R VR  LE S
Sbjct: 439  ILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESS 498

Query: 1012 LMDLDDAVVLFHHF 1053
             M LDDA++LFH F
Sbjct: 499  QMKLDDAILLFHDF 512


>gb|EXC19135.1| DNA-directed RNA polymerase III subunit RPC3 [Morus notabilis]
          Length = 564

 Score =  255 bits (651), Expect = 2e-65
 Identities = 166/423 (39%), Positives = 232/423 (54%), Gaps = 72/423 (17%)
 Frame = +1

Query: 1    KRLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVE-QKTIEQRALAAAAPMESV 177
            ++LL++R+VERCPAP P + P  ++   + KRG  SAK+ E  +T EQR LAAAA ++++
Sbjct: 148  QKLLNSRFVERCPAPEPFVEPSTIKS--SNKRGAKSAKLDEVSETEEQRVLAAAASLDTL 205

Query: 178  RFLM------EMDDIXXXXXXXXXXXPILGRKRKKDALDSDEDV---------------- 291
            RF +      E D+              +G KRK  A DSD+                  
Sbjct: 206  RFSILTPSGTEFDEDKKDGDSSSSMG--VGEKRKHGAADSDDAFGSNENEVILWRANFEE 263

Query: 292  ----LDRKXXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQ 459
                L  K     V+  ++  A+ VL A+LD +  +E +   E S  LS++ I++EV+K 
Sbjct: 264  FTRYLRHKACIENVRARLDVGAATVLKAMLDATRSAEKKVKTENSVSLSMDTIFEEVMKS 323

Query: 460  DGGVGMDLERVKTSLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAY 639
            + G  + L+RV+ SL QLGC +  TD  ++YSID+K II+ AQ EEVES++L+RYG +AY
Sbjct: 324  EAGRSLTLDRVRASLVQLGCSSSGTD--DTYSIDLKQIIELAQKEEVESIVLRRYGRDAY 381

Query: 640  RIFRRLSKAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQ--------GFMPNAN 795
            R+FR LSKAG   ETDKI++ TFVEKK   KIL +LWKDEYLHM+         F  ++N
Sbjct: 382  RMFRLLSKAGLLQETDKIADMTFVEKKEAPKILGKLWKDEYLHMEVEYFNLLIKFTLSSN 441

Query: 796  ------------------------------------RPPAFYVWKVDQQHFRERFLDEMY 867
                                                R   FY+WKV++    +  LDEMY
Sbjct: 442  MAICDVVDKPRLTLSGMSDLVLMDQNKEIVNKFVVDRNTTFYLWKVNKPILWQHVLDEMY 501

Query: 868  HAVLNLRLRITHEQDQRKEVLQLPKDK-LEPLRDKLKVYRIVRTTLERSLMDLDDAVVLF 1044
            HA LNL LR+ HE DQ+KE+L +P +K   PL  + K  +  +  LE SLM LDDA++LF
Sbjct: 502  HAALNLSLRVIHELDQKKELLTIPPEKRTGPLEKEFKRLKNAKFFLESSLMKLDDALMLF 561

Query: 1045 HHF 1053
             HF
Sbjct: 562  RHF 564


>ref|XP_002872419.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297318256|gb|EFH48678.1| RNA polymerase
            III subunit RPC82 family protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 521

 Score =  251 bits (642), Expect = 3e-64
 Identities = 146/372 (39%), Positives = 224/372 (60%), Gaps = 21/372 (5%)
 Frame = +1

Query: 1    KRLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIV-EQKTIEQRALAAAAPMESV 177
            ++L++AR+VER P+P P L     ++ PAKKRG  +AKI+ E +T+E+R + AA P++++
Sbjct: 153  QKLVAARFVERIPSPEPVLGNK--DQEPAKKRGAKAAKILKEPETLEERVVEAATPVDAI 210

Query: 178  RFLMEMDDIXXXXXXXXXXXPILGRKRKKDALDSD-----------EDVLDR---KXXXX 315
            RF +  ++               G+++++D   SD           E+ + R   K    
Sbjct: 211  RFPLIFEEDFNSSLADDDSNITEGKRKQRDVDSSDPSSRVIWRPNFEEFIHRLRHKACVE 270

Query: 316  YVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDLERVK 495
             VK   +   +IVL A+L++    E +   + S  +SV  IY+EVIK + G  M  ERV+
Sbjct: 271  IVKERRDEGCAIVLRAMLEVGRPQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVE 330

Query: 496  TSLYQLGCQT-----LSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLS 660
              L QL   +       T++++SY +D KSII  AQ +E+E+++++RYG+EA+R+FR LS
Sbjct: 331  ACLDQLSATSSYLPAFVTEMNDSYIVDFKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLS 390

Query: 661  KAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQHF 840
            + GR+V+TDKI++A   EKK T +IL ++WKD YLHMQ         P F +WKV++   
Sbjct: 391  QEGRFVDTDKIADAALTEKKDTPQILLKMWKDGYLHMQKLAITGTYVP-FLLWKVNKLIV 449

Query: 841  RERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDKLE-PLRDKLKVYRIVRTTLERSLM 1017
              + LDEMYHA LNL LR+ HE +  KE+L LP DKLE PL++++K  R  R  L  ++ 
Sbjct: 450  TRQMLDEMYHASLNLNLRLAHELESEKELLMLPSDKLEGPLKERVKKVRAKRLLLSSTMF 509

Query: 1018 DLDDAVVLFHHF 1053
             LDDA++LFH F
Sbjct: 510  KLDDAIMLFHDF 521


>ref|XP_007219003.1| hypothetical protein PRUPE_ppa004195mg [Prunus persica]
            gi|462415465|gb|EMJ20202.1| hypothetical protein
            PRUPE_ppa004195mg [Prunus persica]
          Length = 524

 Score =  251 bits (640), Expect = 5e-64
 Identities = 157/374 (41%), Positives = 221/374 (59%), Gaps = 24/374 (6%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVE-QKTIEQRALAAAAPMESVR 180
            +L++A +VERCPAP P L     +E PAKKRG  SAK+VE  +TIEQR +AAAAP E++R
Sbjct: 152  KLVNAHFVERCPAPEPVLGQATKQEGPAKKRGAKSAKMVEVPETIEQRVIAAAAPPEAIR 211

Query: 181  FLMEMDDIXXXXXXXXXXXPILGRKRKKDALDS-----DEDVLDR------------KXX 309
            F + +D              + G K     + S     DE VL R            K  
Sbjct: 212  FSIMIDSEADAPGGKSDNMSV-GEKVGIGIVISIYQGYDEVVLWRANFEEFIRCLRHKAC 270

Query: 310  XXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDLER 489
               V+  +++EA++VL A+L  +  +E +   E S  LS+N IY+EVI  + G  + + R
Sbjct: 271  VENVRARLDDEAAVVLRAMLKATRTAEKKVKTENSVPLSLNTIYEEVINSEAGRSLTMGR 330

Query: 490  VKTSLYQL--GCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLSK 663
            V+ SL  L    Q    D DESYS D+K I++ AQ++EVE ++LKRYG++AY +FR LS 
Sbjct: 331  VRDSLSGLCDSSQERDVDEDESYSADLKKILELAQDDEVELIVLKRYGKDAYTMFRILSL 390

Query: 664  AGRYVETDKISEAT---FVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQ 834
            AGR +ETDKIS+ +    VEK  T KIL+ LWKD+YLHM+  +    R   F VW+VD+ 
Sbjct: 391  AGRPIETDKISDMSQLSLVEKNETPKILYNLWKDDYLHMERLVVTGARQSQFLVWRVDKP 450

Query: 835  HFRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDK-LEPLRDKLKVYRIVRTTLERS 1011
               +  LDEM+H  LNL LR+  E+++ KE+  LP  K L  +  + ++YR V   L+ S
Sbjct: 451  IIWKHVLDEMFHTALNLSLRLACEEERFKEITDLPAHKLLGEMAKQWQLYRNVILVLQAS 510

Query: 1012 LMDLDDAVVLFHHF 1053
            L+ LDDA++LFH F
Sbjct: 511  LLKLDDALMLFHDF 524


>emb|CBI26210.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  250 bits (638), Expect = 8e-64
 Identities = 157/375 (41%), Positives = 221/375 (58%), Gaps = 25/375 (6%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVEQKTI-EQRALAAAAPMESVR 180
            +L++A YVERCPAP P L P   E+ PA+K   NSAK VE+  I EQ  +A A P ++  
Sbjct: 156  KLVNAHYVERCPAPDPFLVPPDEEKTPARKHDANSAKAVEELEIGEQCDIAKATPSKAKG 215

Query: 181  FLMEMD---DIXXXXXXXXXXXPILGRKRKKDALD--------SDEDV------------ 291
            F +  D   DI            ++G+KRK+DAL         S++DV            
Sbjct: 216  FPVITDTCGDINGDKSIGNPPGVVIGKKRKQDALKLDTESGAASEKDVPWRANYKELVCH 275

Query: 292  LDRKXXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGV 471
            L  K     V+  +++ A+IVLSA+L+ +  +E     E S  LS++ I + V++ + G 
Sbjct: 276  LRHKACIENVRARLDSGAAIVLSAMLEATQSAEKNVKEEISVLLSISTITEAVMQSEAGC 335

Query: 472  GMDLERVKTSLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFR 651
             M LER++ SL QLGC       D +Y+ID+K II+ AQN+EVESM+LKRYG EA+RIFR
Sbjct: 336  SMTLERIRASLVQLGCHPNGVGADRTYNIDLKKIIELAQNDEVESMVLKRYGREAHRIFR 395

Query: 652  RLSKAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQ 831
             LSK+   +ET KIS+ TF+EKK  AKIL++LWKDE LHM+  + N +R   F +WKV +
Sbjct: 396  LLSKSCCPLETTKISDTTFIEKKEAAKILYKLWKDECLHMEKIVLNESRQSQFMLWKVKK 455

Query: 832  QHFRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDK-LEPLRDKLKVYRIVRTTLER 1008
              F    LDEMYHA LNL +          ++++L +DK +  LR++     I+   L+ 
Sbjct: 456  DTFWRHILDEMYHAALNLSI----------QIIELRRDKHVGALRERDVRLAIL---LQA 502

Query: 1009 SLMDLDDAVVLFHHF 1053
            SLM LDDA++LFH F
Sbjct: 503  SLMKLDDALMLFHDF 517


>ref|XP_002875937.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297321775|gb|EFH52196.1| RNA polymerase
            III subunit RPC82 family protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 521

 Score =  249 bits (636), Expect = 1e-63
 Identities = 145/372 (38%), Positives = 222/372 (59%), Gaps = 21/372 (5%)
 Frame = +1

Query: 1    KRLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIV-EQKTIEQRALAAAAPMESV 177
            ++L++AR+VER P+P P L     E+ PAKKRG  +AKI+ E +T+E+R + AA P++++
Sbjct: 153  QKLVAARFVERIPSPEPVLGNK--EQEPAKKRGAKAAKILKEPETLEERVVEAATPVDAI 210

Query: 178  RFLMEMDDIXXXXXXXXXXXPILGRKRKKDALDSD-----------EDVLDR---KXXXX 315
            RF +  ++               G+++++D   SD           E+ + R   K    
Sbjct: 211  RFPLIFEEDAHSSLADDDSNITEGKRKQRDVDSSDPSSGVIWHPNYEEFIHRLRHKACVE 270

Query: 316  YVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDLERVK 495
             VK   +   +IVL A+L++    E +   + S  +S+  IY+EVIK + G  M  ERV+
Sbjct: 271  IVKERRDEGCAIVLRAMLEVGRSQEKKVKTDNSAPMSIGSIYEEVIKTEAGRTMLQERVE 330

Query: 496  TSLYQLGCQT-----LSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLS 660
              L QL   +       T++++SY +D KSII  AQ +E+E+++++RYG+EA+R+FR LS
Sbjct: 331  ACLDQLSATSSYLPAFVTEMNDSYIVDFKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLS 390

Query: 661  KAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQHF 840
            + GR+VETDKI++A   EKK T + L ++WKD YLHMQ         P F +WKV++   
Sbjct: 391  QEGRFVETDKIADAALTEKKDTPQFLLKMWKDGYLHMQKLAITGTYVP-FLLWKVNKLIV 449

Query: 841  RERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDKLE-PLRDKLKVYRIVRTTLERSLM 1017
              + LDEMYHA LNL LR+ HE +  KE+L LP DKLE PL++++   R  R  L  ++ 
Sbjct: 450  TRQMLDEMYHASLNLNLRLAHELESEKELLMLPSDKLEGPLKERVIKVRAKRLLLSSTMF 509

Query: 1018 DLDDAVVLFHHF 1053
             LDDA++LFH F
Sbjct: 510  KLDDAIMLFHDF 521


>ref|XP_007143425.1| hypothetical protein PHAVU_007G071300g [Phaseolus vulgaris]
            gi|561016615|gb|ESW15419.1| hypothetical protein
            PHAVU_007G071300g [Phaseolus vulgaris]
          Length = 517

 Score =  246 bits (627), Expect = 2e-62
 Identities = 152/366 (41%), Positives = 218/366 (59%), Gaps = 16/366 (4%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVEQ-KTIEQRALAAAAPMESVR 180
            +LL+AR VERCPAP P +S  + +E   +KRG  SAKI E  +T+EQR L AA P  ++R
Sbjct: 156  KLLTARLVERCPAPEPVVST-SFKETTTRKRGAKSAKIFEAPETLEQRVLEAAVPGNAIR 214

Query: 181  FLMEMDDIXXXXXXXXXXXPILGRKRKKDALDSDEDVLDR------------KXXXXYVK 324
            F    D               +    + DA   +E++L R            K     ++
Sbjct: 215  FSFTADMRSNVDGETNSDDDQITSVEQNDA--KEEEILWRANFEEFIRHIRHKALIENIR 272

Query: 325  TTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDLERVKTSL 504
            T  ++  + VLSAVL+ +   E +   E S  LS++ I  EV+K D G  M ++R++ SL
Sbjct: 273  TQHDDGTATVLSAVLEATKTVEKKVKMENSVPLSLDTITAEVMKTDTGRTMTIDRIRASL 332

Query: 505  YQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLSKAGRYVET 684
             QLGC      +D++YSID+K II++AQNEEVES++LKRYG +AYR+FR LSK   + +T
Sbjct: 333  SQLGCSQRMI-VDDAYSIDLKKIIERAQNEEVESIVLKRYGRDAYRMFRLLSKDCCFHDT 391

Query: 685  DKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPAFYVWKVDQQHFRERFLDEM 864
            D+I+ +T VEKK   K+L++LWKD YL+M+  +    +     +WKV++    E  LDEM
Sbjct: 392  DQIAASTLVEKKEAPKLLYRLWKDNYLYMEKVIATGVKQTTILMWKVNKPLVWEHVLDEM 451

Query: 865  YHAVLNLRLRITHEQDQRKEVLQLPKDKLE---PLRDKLKVYRIVRTTLERSLMDLDDAV 1035
            YHA LNL LR+  EQ++ +E+L +PKDKL+   PL+ K K    V   L  SLM LD+A+
Sbjct: 452  YHAALNLSLRMAFEQEKDEELLNVPKDKLKEPGPLQKKYKRLLNVWLLLGSSLMKLDEAL 511

Query: 1036 VLFHHF 1053
            +LFH F
Sbjct: 512  MLFHDF 517


>ref|XP_004308082.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
            [Fragaria vesca subsp. vesca]
          Length = 534

 Score =  244 bits (623), Expect = 4e-62
 Identities = 156/383 (40%), Positives = 213/383 (55%), Gaps = 33/383 (8%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVEQKTIEQRALAAAAPMESVRF 183
            RL++AR+VERCPAP P L     +E P K RG ++  +   +TIEQR LAAA PME++RF
Sbjct: 153  RLVNARFVERCPAPEPLLEEPPEQEGPKKPRGKSAKMVQVPETIEQRVLAAARPMEAIRF 212

Query: 184  LM----EMDDIXXXXXXXXXXXPILGRKRKKDALDSDED-------------------VL 294
            L+    E DD             + G KRK D LDS+E                     L
Sbjct: 213  LITTESETDDPLQKSENNFSSMGV-GEKRKFDDLDSEEHGSNDKGVILWRANFEQFIRCL 271

Query: 295  DRKXXXXYVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVG 474
              K     V+   ++ A++VL AVL  +   ET+   + S  L ++ IY+EV+  +    
Sbjct: 272  RHKACIESVRARHDDGAAVVLRAVLKATRNQETKVKTDYSGPLKMDAIYEEVMDSEACPS 331

Query: 475  MDLERVKTSLYQLGCQTLST------DIDESYSIDIKSIIQKAQNEEVESMILKRYGEEA 636
            ++ E V+  L  L    L T      + D  YS+D+K II+  QN+EVES++LKRYG++A
Sbjct: 332  LEQECVRAHLRLLCGAPLVTGEYEDENEDVLYSVDLKKIIELLQNDEVESIVLKRYGKDA 391

Query: 637  YRIFRRL---SKAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNANRPPA 807
            YRIFR L   S AGR+ ETDKISE   V+KK T KIL++LWKD+Y+HM+     A +   
Sbjct: 392  YRIFRLLTSQSNAGRFFETDKISEMALVDKKETPKILYKLWKDDYVHMEKLSLTAAKQSQ 451

Query: 808  FYVWKVDQQHFRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDK-LEPLRDKLKVYR 984
              VWKV +    E  LDEMYHA  NL  R  HE+++ KEV   PK+K +  L  K   + 
Sbjct: 452  VMVWKVHKSIVWEHVLDEMYHAAYNLVKRYDHEREENKEVTNTPKEKRIGELEKKANRFL 511

Query: 985  IVRTTLERSLMDLDDAVVLFHHF 1053
             VR  +  SL+ LDDA++LFH F
Sbjct: 512  AVRKIMASSLLKLDDALMLFHDF 534


>ref|NP_566914.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis
            thaliana] gi|20466336|gb|AAM20485.1| RNA polymerase III
            subunit-like protein [Arabidopsis thaliana]
            gi|34098883|gb|AAQ56824.1| At3g49000 [Arabidopsis
            thaliana] gi|332644960|gb|AEE78481.1| RNA polymerase III
            subunit RPC82 family protein [Arabidopsis thaliana]
          Length = 523

 Score =  243 bits (621), Expect = 7e-62
 Identities = 144/373 (38%), Positives = 222/373 (59%), Gaps = 22/373 (5%)
 Frame = +1

Query: 1    KRLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIV-EQKTIEQRALAAAAPMESV 177
            ++L++AR+VER P+P P L     E+ PAK+RG  +AKI+ E +T+E++ + AA P++++
Sbjct: 153  QKLVAARFVERIPSPEPVLGNK--EKEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAI 210

Query: 178  RFLMEMDDIXXXXXXXXXXXPILGRKRKKDALDSD-----------EDVLDR---KXXXX 315
            RF +  ++               G+++++D   SD           E+ + R   K    
Sbjct: 211  RFPLIFEEDSNSSLADDNSNITEGKRKQRDVDTSDSSSGVIWRPNFEEFIHRLRHKACVE 270

Query: 316  YVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDLERVK 495
             VK   +   +IVL A+L++    E +   + S  +SV  IY+EVIK + G  M  ERV+
Sbjct: 271  IVKERRDEGCAIVLRAMLEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVE 330

Query: 496  TSLYQLGCQT-----LSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLS 660
              L QL   +        ++++SY +D KSII  AQ +E+E+++++RYG+EA+R+FR LS
Sbjct: 331  ACLDQLSATSSYLPAFVNEVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLS 390

Query: 661  KAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNA-NRPPAFYVWKVDQQH 837
            + GR+VETDKI++A   EKK T + L ++WKD YLHMQ     A      F +WKV++  
Sbjct: 391  QEGRFVETDKIADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLI 450

Query: 838  FRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDKLE-PLRDKLKVYRIVRTTLERSL 1014
               + LDEMYHA LNL LR+ HE +  KE+L LP DKLE PL+++LK  +  R  L  ++
Sbjct: 451  VTTQMLDEMYHASLNLSLRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTM 510

Query: 1015 MDLDDAVVLFHHF 1053
              LDDA++LFH F
Sbjct: 511  FKLDDAIMLFHDF 523


>gb|AAM62793.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
          Length = 521

 Score =  243 bits (621), Expect = 7e-62
 Identities = 144/373 (38%), Positives = 222/373 (59%), Gaps = 22/373 (5%)
 Frame = +1

Query: 1    KRLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIV-EQKTIEQRALAAAAPMESV 177
            ++L++AR+VER P+P P L     E+ PAK+RG  +AKI+ E +T+E++ + AA P++++
Sbjct: 151  QKLVAARFVERIPSPEPVLGNK--EKEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAI 208

Query: 178  RFLMEMDDIXXXXXXXXXXXPILGRKRKKDALDSD-----------EDVLDR---KXXXX 315
            RF +  ++               G+++++D   SD           E+ + R   K    
Sbjct: 209  RFPLIFEEDSNSSLADDNSNITEGKRKQRDVDTSDSSSGVIWRPNFEEFIHRLRHKACVE 268

Query: 316  YVKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDLERVK 495
             VK   +   +IVL A+L++    E +   + S  +SV  IY+EVIK + G  M  ERV+
Sbjct: 269  IVKERRDEGCAIVLRAMLEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVE 328

Query: 496  TSLYQLGCQT-----LSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLS 660
              L QL   +        ++++SY +D KSII  AQ +E+E+++++RYG+EA+R+FR LS
Sbjct: 329  ACLDQLSATSSYLPAFVNEVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLS 388

Query: 661  KAGRYVETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNA-NRPPAFYVWKVDQQH 837
            + GR+VETDKI++A   EKK T + L ++WKD YLHMQ     A      F +WKV++  
Sbjct: 389  QEGRFVETDKIADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLI 448

Query: 838  FRERFLDEMYHAVLNLRLRITHEQDQRKEVLQLPKDKLE-PLRDKLKVYRIVRTTLERSL 1014
               + LDEMYHA LNL LR+ HE +  KE+L LP DKLE PL+++LK  +  R  L  ++
Sbjct: 449  VTTQMLDEMYHASLNLSLRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTM 508

Query: 1015 MDLDDAVVLFHHF 1053
              LDDA++LFH F
Sbjct: 509  FKLDDAIMLFHDF 521


>ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 518

 Score =  241 bits (615), Expect = 4e-61
 Identities = 153/369 (41%), Positives = 221/369 (59%), Gaps = 19/369 (5%)
 Frame = +1

Query: 4    RLLSARYVERCPAPVPSLSPHAVEEPPAKKRGTNSAKIVE-QKTIEQRALAAAAPMESVR 180
            +LL+AR+VERCPAP P +S  + +E   KKRG  SAKI E  +T+EQR + AA P + +R
Sbjct: 156  KLLTARFVERCPAPEPVVST-SFKETTTKKRGAKSAKIFEAPETLEQRVVDAAVPGDVIR 214

Query: 181  FLM------------EMDDI--XXXXXXXXXXXPILGRKRKKDALDSDEDVLDRKXXXXY 318
            F +              DD+              IL R   ++ +      L  K     
Sbjct: 215  FSLTANMGSNVDRETNSDDVPMISVEEDVAKEEQILWRANFEEFIRH----LRHKVLIEN 270

Query: 319  VKTTINNEASIVLSAVLDLSGRSETRPVAEKSPYLSVNDIYDEVIKQDGGVGMDLERVKT 498
            V+T  ++  + VLSAVL+ +G  E +   + S  LS++ I  EV+K D G  M ++R++ 
Sbjct: 271  VRTQHDDGTATVLSAVLEATGSVEKKVKMDNSVPLSLDTIITEVMKTDTGRTMTIDRIRA 330

Query: 499  SLYQLGCQTLSTDIDESYSIDIKSIIQKAQNEEVESMILKRYGEEAYRIFRRLSKAGRYV 678
            SL QLGC   S  ++ESY ID+K II+ A+NEEVES++LKRYG +AYR+FR L+K   + 
Sbjct: 331  SLVQLGCSP-SMILEESYCIDLKKIIEPARNEEVESIVLKRYGRDAYRMFRLLAKDCCFH 389

Query: 679  ETDKISEATFVEKKGTAKILFQLWKDEYLHMQGFMPNAN-RPPAFYVWKVDQQHFRERFL 855
            +TD+I+ +T VEKK  +K+L++LWKD YL+M+     A  +     +WKV++    E  L
Sbjct: 390  DTDQIAASTLVEKKEASKLLYKLWKDNYLYMEKVGATAGAKQITILMWKVNKPLLWEYVL 449

Query: 856  DEMYHAVLNLRLRITHEQDQRKEVLQLPKDKLE---PLRDKLKVYRIVRTTLERSLMDLD 1026
            DEMYHA LNL LR+  EQ++ +E+L++PKDKL    PL+ K K    VR  +  SL+ LD
Sbjct: 450  DEMYHAALNLSLRMAFEQEKDEELLKVPKDKLREPGPLQKKYKRLLNVRLLMGSSLLKLD 509

Query: 1027 DAVVLFHHF 1053
            DA++LFH F
Sbjct: 510  DALMLFHDF 518