BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00031863
         (421 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus]    250   1e-64
ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic st...   249   3e-64
ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus] gi|5...   249   3e-64
gb|AGH25505.1| RNA-dependent RNA polymerase, partial [Tomato bla...   103   3e-20
ref|NP_734035.1| RNA-dependent RNA polymerase [Beet ringspot virus]   102   6e-20
prf||1507292A polyprotein                                             102   6e-20
sp|P18522.1|POL1_BRSV RecName: Full=RNA1 polyprotein; AltName: F...   102   6e-20
ref|NP_620112.1| polyprotein [Beet ringspot virus] gi|538251|dbj...   102   6e-20
gb|AGH25498.1| RNA-dependent RNA polymerase, partial [Tomato bla...   101   1e-19
gb|AGH25497.1| RNA-dependent RNA polymerase, partial [Tomato bla...   100   4e-19
gb|AGH25503.1| RNA-dependent RNA polymerase, partial [Tomato bla...    99   6e-19
gb|AGH25499.1| RNA-dependent RNA polymerase, partial [Tomato bla...    99   6e-19
gb|AGH25496.1| RNA-dependent RNA polymerase, partial [Tomato bla...    99   6e-19
gb|AGH25500.1| RNA-dependent RNA polymerase, partial [Tomato bla...    99   8e-19
gb|AGH25504.1| RNA-dependent RNA polymerase, partial [Tomato bla...    98   1e-18
gb|AGH25502.1| RNA-dependent RNA polymerase, partial [Tomato bla...    98   1e-18
gb|AGH25501.1| RNA-dependent RNA polymerase, partial [Tomato bla...    98   1e-18
ref|NP_958841.1| Pol [Tomato black ring virus]                         98   1e-18
ref|NP_958814.1| polyprotein [Tomato black ring virus] gi|513164...    98   1e-18
ref|YP_006576510.1| polyprotein p1 [Grapevine Anatolian ringspot...    93   4e-17

>gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus]
          Length = 1984

 Score =  250 bits (639), Expect = 1e-64
 Identities = 117/139 (84%), Positives = 127/139 (91%)
 Frame = +3

Query: 3    TALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDK 182
            TALNLYRNVIPEST GLEQYFDAAIPQASLPG FY ANAE+E LLQEHKTGT+IGL TDK
Sbjct: 1837 TALNLYRNVIPESTYGLEQYFDAAIPQASLPGTFYLANAESESLLQEHKTGTVIGLTTDK 1896

Query: 183  KNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
             NL+  RDLIMQGQ+LGKLPIMAATQAP K+YVGLCC K FCPGHATSS+++ KAFSQCW
Sbjct: 1897 ANLNGARDLIMQGQKLGKLPIMAATQAPNKFYVGLCCQKNFCPGHATSSDTIAKAFSQCW 1956

Query: 363  AMRCAPNSSSRKVTFEPDW 419
            AMRCAPNSSSRK+TFEP+W
Sbjct: 1957 AMRCAPNSSSRKITFEPEW 1975


>ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic stunt virus]
          Length = 846

 Score =  249 bits (636), Expect = 3e-64
 Identities = 117/139 (84%), Positives = 127/139 (91%)
 Frame = +3

Query: 3    TALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDK 182
            TALNLYRNVIPEST GLEQYFDAAIPQASLPG FY ANAE+E LLQEHKTGT+IGL T+K
Sbjct: 699  TALNLYRNVIPESTYGLEQYFDAAIPQASLPGTFYLANAESESLLQEHKTGTVIGLTTEK 758

Query: 183  KNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
             NL+  RDLIMQGQ+LGKLP+MAATQAP K+YVGLCC K FCPGHATSS+S+ KAFSQCW
Sbjct: 759  FNLNGARDLIMQGQKLGKLPVMAATQAPNKFYVGLCCQKNFCPGHATSSDSIAKAFSQCW 818

Query: 363  AMRCAPNSSSRKVTFEPDW 419
            AMRCAPNSSSRKVTFEP+W
Sbjct: 819  AMRCAPNSSSRKVTFEPEW 837


>ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus]
            gi|50400776|sp|Q8QVV0.1|POL1_CNSV RecName: Full=RNA1
            polyprotein; AltName: Full=P1; Contains: RecName:
            Full=P1A protein; Short=1A; AltName: Full=Protease
            cofactor; Contains: RecName: Full=Putative ATP-dependent
            helicase; AltName: Full=1B; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=1C-VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; AltName: Full=1D-PRO; Contains: RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
            gi|20160382|dbj|BAB89369.1| polyprotien 1 [Cycas necrotic
            stunt virus]
          Length = 2336

 Score =  249 bits (636), Expect = 3e-64
 Identities = 117/139 (84%), Positives = 127/139 (91%)
 Frame = +3

Query: 3    TALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDK 182
            TALNLYRNVIPEST GLEQYFDAAIPQASLPG FY ANAE+E LLQEHKTGT+IGL T+K
Sbjct: 2189 TALNLYRNVIPESTYGLEQYFDAAIPQASLPGTFYLANAESESLLQEHKTGTVIGLTTEK 2248

Query: 183  KNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
             NL+  RDLIMQGQ+LGKLP+MAATQAP K+YVGLCC K FCPGHATSS+S+ KAFSQCW
Sbjct: 2249 FNLNGARDLIMQGQKLGKLPVMAATQAPNKFYVGLCCQKNFCPGHATSSDSIAKAFSQCW 2308

Query: 363  AMRCAPNSSSRKVTFEPDW 419
            AMRCAPNSSSRKVTFEP+W
Sbjct: 2309 AMRCAPNSSSRKVTFEPEW 2327


>gb|AGH25505.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  103 bits (256), Expect = 3e-20
 Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
           AL  YRNVIPEST+GLEQYFDA +PQA++ G FYF + ET   L E+K G ++      K
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPVPQANI-GTFYFGDGETYAALCEYKDGKVLQYEGWPK 204

Query: 186 NLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW- 362
           ++      + Q  Q  K+P M A Q  G++ V + C  K CP H+ +  + E AF QCW 
Sbjct: 205 SI------LNQAAQDRKVPCMVARQCKGRFTVHMACDSKMCPHHSATGANYEVAFKQCWL 258

Query: 363 -AMRCAPNSSSR 395
              +CA N+ S+
Sbjct: 259 NKCKCAGNTVSK 270


>ref|NP_734035.1| RNA-dependent RNA polymerase [Beet ringspot virus]
          Length = 824

 Score =  102 bits (254), Expect = 6e-20
 Identities = 57/124 (45%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +3

Query: 6    ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
            AL  YRNVIPEST+GLEQYFDA +P A++ G FYFAN ET   L E+K G ++       
Sbjct: 693  ALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGETYAALCEYKEGKVL------- 744

Query: 186  NLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
            N +    LI+ +  +  K+P M ATQA  K+ V L C    CP H     + EKAF  CW
Sbjct: 745  NYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDSTMCPHHTAVCETYEKAFRHCW 804

Query: 363  AMRC 374
              +C
Sbjct: 805  LAKC 808


>prf||1507292A polyprotein
          Length = 2264

 Score =  102 bits (254), Expect = 6e-20
 Identities = 57/124 (45%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +3

Query: 6    ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
            AL  YRNVIPEST+GLEQYFDA +P A++ G FYFAN ET   L E+K G ++       
Sbjct: 2133 ALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGETYAALCEYKEGKVL------- 2184

Query: 186  NLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
            N +    LI+ +  +  K+P M ATQA  K+ V L C    CP H     + EKAF  CW
Sbjct: 2185 NYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDSTMCPHHTAVCETYEKAFRHCW 2244

Query: 363  AMRC 374
              +C
Sbjct: 2245 LAKC 2248


>sp|P18522.1|POL1_BRSV RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName:
            Full=P1A protein; Short=1A; AltName: Full=Protease
            cofactor; Contains: RecName: Full=Putative ATP-dependent
            helicase; AltName: Full=1B; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=1C-VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; AltName: Full=1D-PRO; Contains: RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
          Length = 2264

 Score =  102 bits (254), Expect = 6e-20
 Identities = 57/124 (45%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +3

Query: 6    ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
            AL  YRNVIPEST+GLEQYFDA +P A++ G FYFAN ET   L E+K G ++       
Sbjct: 2133 ALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGETYAALCEYKEGKVL------- 2184

Query: 186  NLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
            N +    LI+ +  +  K+P M ATQA  K+ V L C    CP H     + EKAF  CW
Sbjct: 2185 NYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDSTMCPHHTAVCETYEKAFRHCW 2244

Query: 363  AMRC 374
              +C
Sbjct: 2245 LAKC 2248


>ref|NP_620112.1| polyprotein [Beet ringspot virus] gi|538251|dbj|BAA00234.1|
            polyprotein [Beet ringspot virus]
          Length = 2266

 Score =  102 bits (254), Expect = 6e-20
 Identities = 57/124 (45%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +3

Query: 6    ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
            AL  YRNVIPEST+GLEQYFDA +P A++ G FYFAN ET   L E+K G ++       
Sbjct: 2135 ALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGETYAALCEYKEGKVL------- 2186

Query: 186  NLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
            N +    LI+ +  +  K+P M ATQA  K+ V L C    CP H     + EKAF  CW
Sbjct: 2187 NYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDSTMCPHHTAVCETYEKAFRHCW 2246

Query: 363  AMRC 374
              +C
Sbjct: 2247 LAKC 2250


>gb|AGH25498.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  101 bits (251), Expect = 1e-19
 Identities = 58/132 (43%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
           AL  YRNVIPEST+GLEQYFDA IPQA++ G FYF + ET   L E+K G ++      +
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPIPQANI-GTFYFGDGETYAALCEYKDGKVL----QYE 200

Query: 186 NLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW- 362
            L +T  ++ Q  Q  K+P M A Q   K+ V + C  + CP H+ +  + E AF QCW 
Sbjct: 201 GLPTT--ILNQAAQDRKVPCMVARQWKSKFTVHMACDSRMCPHHSATGANYEVAFKQCWL 258

Query: 363 -AMRCAPNSSSR 395
              +CA N+ S+
Sbjct: 259 NKCKCAGNTVSK 270


>gb|AGH25497.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
           AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + ET   L E+K G ++      +
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGETYAALCEYKDGKVL----QYE 200

Query: 186 NLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW- 362
            L +T  ++ Q  +  K+P + A Q   K+ V + C  + CP H+ +  + E AF QCW 
Sbjct: 201 GLPTT--ILNQAAKERKVPCIVARQRKDKFTVHMACDSRMCPHHSATGANYEVAFKQCWL 258

Query: 363 -AMRCAPNSSSR 395
              +CA N+ S+
Sbjct: 259 NKCKCAGNTVSK 270


>gb|AGH25503.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 58/133 (43%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
           AL  YRNVIPEST+GLEQYFDA IP A++ G FYF + ET   L E+K G ++       
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPIPSANI-GTFYFGDGETYAALCEYKDGKVL------- 197

Query: 186 NLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
             +    LI+ Q  +  K+P M A Q  GK+ V + C  K CP H  +  + E AF QCW
Sbjct: 198 QYEGLPTLILNQAAKDRKVPCMVARQRKGKFTVHMACDSKMCPHHFATGANYEVAFKQCW 257

Query: 363 --AMRCAPNSSSR 395
               +CA N+ S+
Sbjct: 258 LNKCKCAGNTVSK 270


>gb|AGH25499.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 58/133 (43%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
           AL  YRNVIPEST+GLEQYFDA IP A++ G FYF + ET   L E+K G ++       
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPIPSANI-GTFYFGDGETYAALCEYKDGKVL------- 197

Query: 186 NLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
             +    LI+ Q  +  K+P M A Q  GK+ V + C  K CP H  +  + E AF QCW
Sbjct: 198 QYEGLPTLILNQAAKDRKVPCMVARQRKGKFTVHMACDSKMCPHHFATGANYEVAFKQCW 257

Query: 363 --AMRCAPNSSSR 395
               +CA N+ S+
Sbjct: 258 LNKCKCAGNTVSK 270


>gb|AGH25496.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 58/133 (43%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
           AL  YRNVIPEST+GLEQYFDA IP A++ G FYF + ET   L E+K G ++       
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPIPSANI-GTFYFGDGETYAALCEYKDGKVL------- 197

Query: 186 NLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCW 362
             +    LI+ Q  +  K+P M A Q  GK+ V + C  K CP H  +  + E AF QCW
Sbjct: 198 QYEGLPTLILNQAAKDRKVPCMVARQRKGKFTVHMACDSKMCPHHFATGANYEVAFKQCW 257

Query: 363 --AMRCAPNSSSR 395
               +CA N+ S+
Sbjct: 258 LNKCKCAGNTVSK 270


>gb|AGH25500.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 56/126 (44%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTII---GLMT 176
           AL  YRNVIPEST+GLEQYFDA I QAS+ G FYF + ET   L E+K G ++   GL T
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPISQASV-GTFYFGDGETYAALCEYKDGKVLQYEGLPT 204

Query: 177 DKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQ 356
                     ++ Q  +  K+P M A Q   K+ V + C  + CP H+ +  + E AF Q
Sbjct: 205 M---------ILNQAAKERKVPCMVARQRKNKFTVQMACDSRMCPHHSATGANYEVAFKQ 255

Query: 357 CWAMRC 374
           CW  RC
Sbjct: 256 CWVSRC 261


>gb|AGH25504.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 56/126 (44%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTII---GLMT 176
           AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + ET   L E+K G ++   GL T
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGETYAALCEYKDGKVLQYEGLPT 204

Query: 177 DKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQ 356
                     ++ Q  +  K+P M A Q   K+ V + C    CP H+ +  + E AF Q
Sbjct: 205 ---------AILNQAAKDRKVPCMVARQWKSKFTVRMACDSSMCPHHSATCANFELAFKQ 255

Query: 357 CWAMRC 374
           CW  +C
Sbjct: 256 CWLSKC 261


>gb|AGH25502.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 56/126 (44%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTII---GLMT 176
           AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + ET   L E+K G ++   GL T
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGETYAALCEYKDGKVLQYEGLPT 204

Query: 177 DKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQ 356
                     ++ Q  +  K+P M A Q   K+ V + C    CP H+ +  + E AF Q
Sbjct: 205 ---------AILNQAAKDRKVPCMVARQWKSKFTVRMACDSSMCPHHSATCANFELAFKQ 255

Query: 357 CWAMRC 374
           CW  +C
Sbjct: 256 CWLSKC 261


>gb|AGH25501.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 56/126 (44%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
 Frame = +3

Query: 6   ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTII---GLMT 176
           AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + ET   L E+K G ++   GL T
Sbjct: 146 ALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGETYAALCEYKDGKVLQYEGLPT 204

Query: 177 DKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQ 356
                     ++ Q  +  K+P M A Q   K+ V + C    CP H+ +  + E AF Q
Sbjct: 205 ---------AILNQAAKDRKVPCMVARQWKSKFTVRMACDSSMCPHHSATCANFELAFKQ 255

Query: 357 CWAMRC 374
           CW  +C
Sbjct: 256 CWLSKC 261


>ref|NP_958841.1| Pol [Tomato black ring virus]
          Length = 824

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 56/126 (44%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
 Frame = +3

Query: 6    ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTII---GLMT 176
            AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + ET   L E+K G ++   GL T
Sbjct: 693  ALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGETYTALCEYKDGKVLQYEGLPT 751

Query: 177  DKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQ 356
                      ++ Q  +  K+P M A Q   K+ V + C    CP H+ +  + E AF Q
Sbjct: 752  ---------AILNQAAKDRKVPCMVARQWKSKFTVRMACDSNMCPHHSATCANFELAFKQ 802

Query: 357  CWAMRC 374
            CW  +C
Sbjct: 803  CWLSKC 808


>ref|NP_958814.1| polyprotein [Tomato black ring virus]
            gi|51316452|sp|Q8B8X3.1|POL1_TBRVM RecName: Full=RNA1
            polyprotein; AltName: Full=P1; Contains: RecName:
            Full=P1A protein; Short=1A; AltName: Full=protease
            cofactor; Contains: RecName: Full=Putative ATP-dependent
            helicase; AltName: Full=1B; AltName: Full=NTP-binding
            protein; Short=NTB; AltName: Full=membrane-binding
            protein; Contains: RecName: Full=Viral genome-linked
            protein; AltName: Full=1C-VPg; Contains: RecName:
            Full=Picornain 3C-like protease; Short=3C-like protease;
            AltName: Full=1D-PRO; Contains: RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
            gi|25247332|gb|AAN72830.1| polyprotein [Tomato black ring
            virus]
          Length = 2266

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 56/126 (44%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
 Frame = +3

Query: 6    ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTII---GLMT 176
            AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + ET   L E+K G ++   GL T
Sbjct: 2135 ALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGETYTALCEYKDGKVLQYEGLPT 2193

Query: 177  DKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQ 356
                      ++ Q  +  K+P M A Q   K+ V + C    CP H+ +  + E AF Q
Sbjct: 2194 ---------AILNQAAKDRKVPCMVARQWKSKFTVRMACDSNMCPHHSATCANFELAFKQ 2244

Query: 357  CWAMRC 374
            CW  +C
Sbjct: 2245 CWLSKC 2250


>ref|YP_006576510.1| polyprotein p1 [Grapevine Anatolian ringspot virus]
            gi|400131550|emb|CCG47847.1| polyprotein p1 [Grapevine
            Anatolian ringspot virus]
          Length = 2243

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
 Frame = +3

Query: 6    ALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDKK 185
            AL  YRN IPES +GLE+YFDA IP A++ G+ YFAN ET   L + K   ++       
Sbjct: 2111 ALAHYRNSIPESVDGLERYFDAPIPAAAV-GKCYFANGETYAALCQFKEAEVL------- 2162

Query: 186  NLDST--RDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQC 359
            N+D+      + +  ++GK P + A+Q  GK++V + C  K CP H  +S + E AF  C
Sbjct: 2163 NIDAPLGTQALNEAAKMGKTPCLFASQQRGKFHVYMVCDNKMCPHHHATSPNYEAAFRHC 2222

Query: 360  WAMRC 374
            W  +C
Sbjct: 2223 WLAKC 2227