BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00031848
         (1200 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]   707   0.0  
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...   658   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   618   e-174
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...   618   e-174
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    617   e-174
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   617   e-174
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     617   e-174
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     615   e-174
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    613   e-173
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   611   e-172
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   611   e-172
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   607   e-171
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   606   e-171
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   603   e-170
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       602   e-169
ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   598   e-168
ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   598   e-168
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   596   e-168
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L...   589   e-166
ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago trunc...   587   e-165

>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score =  707 bits (1826), Expect = 0.0
 Identities = 348/400 (87%), Positives = 371/400 (92%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR Y++ISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVRE+T NL+PQ+TTMF+R
Sbjct: 431  ELSNRVLRNYKNISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREITSNLNPQRTTMFKR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            VRDILY+GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ T+V  IK WMGKFTNRNVAKC
Sbjct: 491  VRDILYQGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRKTSVVCIKTWMGKFTNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP +QAN K  DVERN YIFSDGIGMIS+DLAKEVAEKLQ+ T 
Sbjct: 551  AARMGQCFSSTYATVEVPSAQANSK-SDVERNGYIFSDGIGMISADLAKEVAEKLQLRTK 609

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
            LPCA+QIRYAGYKGVVACWPA  NG RLQLR SM+KFDS+HTTLEICSWTRFQPGFLNRQ
Sbjct: 610  LPCAYQIRYAGYKGVVACWPAENNGHRLQLRPSMKKFDSDHTTLEICSWTRFQPGFLNRQ 669

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            IVTLLS+LEV D+ FWRMQELM++RLD ILEDPDMAFDVLT SC+D GNTAAMMLAAGFR
Sbjct: 670  IVTLLSSLEVCDENFWRMQELMIARLDGILEDPDMAFDVLTASCSDQGNTAAMMLAAGFR 729

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
               EPHLRGML SIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS PSL
Sbjct: 730  SHTEPHLRGMLMSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSKPSL 789

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            EDCFA HGSEFS+TKK+LEVI GLVVIAKNPCLHPGDVRI
Sbjct: 790  EDCFANHGSEFSETKKDLEVIKGLVVIAKNPCLHPGDVRI 829


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score =  658 bits (1698), Expect = 0.0
 Identities = 316/400 (79%), Positives = 354/400 (88%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR Y++++DRFLRVTF DEAM TLNKN LTYY  P+VR +T + +PQ+TT+F+R
Sbjct: 432  ELSNRVLRHYKAVADRFLRVTFTDEAMSTLNKNALTYYVGPMVRGITSSSNPQRTTIFKR 491

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            ++DIL+ GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK   V +IKNWMG+FTNRNVAKC
Sbjct: 492  IKDILHSGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKDIGVANIKNWMGRFTNRNVAKC 551

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP  Q N KL D+ERN+Y+FSDGIGM+S+DLA EVAEKLQ+ TN
Sbjct: 552  AARMGQCFSSTYATVEVPSKQVNSKLPDIERNDYVFSDGIGMLSADLAMEVAEKLQLTTN 611

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
            LP A+QIRYAGYKGVVACWPA  +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQ
Sbjct: 612  LPSAYQIRYAGYKGVVACWPAQSDGFRLSLRKSMKKFDSNHTVLEICSWTRFQPGFLNRQ 671

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLSALEV D+ FWRMQE M+SRL+ +LED D AFDVLT SCTD GNTAA+ML+AGF+
Sbjct: 672  IITLLSALEVGDEIFWRMQETMISRLNQMLEDTDTAFDVLTSSCTDQGNTAAIMLSAGFK 731

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHLRGML+SIRV+QLGDLRE++RIFV SGRWLMGCLDELGVLE+GQCFIQVS PSL
Sbjct: 732  PQTEPHLRGMLTSIRVAQLGDLRERARIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSL 791

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            EDCF KHGSEFS  KK LEVI GLV IAKNPCLHPGDVRI
Sbjct: 792  EDCFVKHGSEFSGAKKKLEVIKGLVAIAKNPCLHPGDVRI 831


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  618 bits (1594), Expect = e-174
 Identities = 299/400 (74%), Positives = 343/400 (85%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQR
Sbjct: 431  ELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKC
Sbjct: 491  VKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP S+ N +L D+ERN Y+FSDGIGMIS+DLA EVAEKL +  N
Sbjct: 551  AARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVN 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQ
Sbjct: 611  PPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            IVTLLS+L+V+D  FW MQ+ M++ LD +L D D+AFDV+T SC + GNTAA+ML+AGF+
Sbjct: 671  IVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSL
Sbjct: 731  PQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF KHGS+FS  KKNL+V+ GLVVIAKNPCLHPGDVRI
Sbjct: 791  ENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRI 830


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score =  618 bits (1593), Expect = e-174
 Identities = 299/400 (74%), Positives = 345/400 (86%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLRKY+ ISDRFLRVTFMDE M+ LN+N LTYYAA IVRE+T + +PQ+T +FQR
Sbjct: 431  ELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSSNPQRTGIFQR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ I+ KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V SI NWMGKF NRNVAKC
Sbjct: 491  VKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMGKFGNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEV PS+ N +L D+ERN Y+FSDGIGM+++DL+ EVA KLQ+  N
Sbjct: 551  AARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIEVAAKLQLSVN 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSWTR QPGFLNRQ
Sbjct: 611  PPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GNTAA+ML+AGF+
Sbjct: 671  IITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDELG LE GQCFIQVS+PSL
Sbjct: 731  PQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQCFIQVSSPSL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E CF KHG EFS+ KKNL+V+ GLVVIAKNPCLHPGDVRI
Sbjct: 791  ETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRI 830


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  617 bits (1592), Expect = e-174
 Identities = 298/400 (74%), Positives = 343/400 (85%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQR
Sbjct: 431  ELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKC
Sbjct: 491  VKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP S+ N +L D+ERN Y+FSDGIGMIS+DLA EVAEKL ++ N
Sbjct: 551  AARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLNVN 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRYAGYKGVVACWP   +G  L LR SM+KFDSNHT LEICSWTRFQPGFLNRQ
Sbjct: 611  PPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            IVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTAA+ML+AGF+
Sbjct: 671  IVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSL
Sbjct: 731  PQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRI
Sbjct: 791  ENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRI 830


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score =  617 bits (1591), Expect = e-174
 Identities = 299/400 (74%), Positives = 345/400 (86%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLRKY+ +SDRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T + +PQ+T +FQR
Sbjct: 432  ELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSSSNPQRTGIFQR 491

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V +I NWMGKF NRNVAKC
Sbjct: 492  VKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWMGKFGNRNVAKC 551

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEV PS+ N +L D+ERN Y+FSDGIGM+S+DL+ EVA KLQ+  N
Sbjct: 552  AARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSIEVAAKLQLSVN 611

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSWTR QPGFLNRQ
Sbjct: 612  PPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQ 671

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GNTAA+ML+AGF+
Sbjct: 672  IITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFK 731

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDEL  LE GQCFIQVS+PSL
Sbjct: 732  PQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQGQCFIQVSSPSL 791

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E CF KHG +FS+ KKNL+VI GLVVIAKNPCLHPGDVRI
Sbjct: 792  ETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRI 831


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  617 bits (1591), Expect = e-174
 Identities = 299/400 (74%), Positives = 342/400 (85%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQR
Sbjct: 431  ELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKC
Sbjct: 491  VKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP S+ N +L D+ERN Y+FSDGIGMIS+DLA EVAEKL +  N
Sbjct: 551  AARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVN 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQ
Sbjct: 611  PPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            IVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTAA+ML+AGF+
Sbjct: 671  IVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSL
Sbjct: 731  PQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRI
Sbjct: 791  ENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRI 830


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  615 bits (1587), Expect = e-174
 Identities = 298/400 (74%), Positives = 342/400 (85%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQR
Sbjct: 431  ELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKC
Sbjct: 491  VKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP S+ N +L D+ERN Y+FSDGIGMIS+DLA EVAEKL +  N
Sbjct: 551  AARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAVEVAEKLHLSVN 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQ
Sbjct: 611  PPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            IVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTAA+ML+AGF+
Sbjct: 671  IVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSL
Sbjct: 731  PQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRI
Sbjct: 791  ENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRI 830


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  613 bits (1581), Expect = e-173
 Identities = 297/400 (74%), Positives = 341/400 (85%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQR
Sbjct: 431  ELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKC
Sbjct: 491  VKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP  + N +L D+ERN Y+FSDGIGMIS+DLA EVAEKL +  N
Sbjct: 551  AARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVN 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQ
Sbjct: 611  PPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            IVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTAA+ML+AGF+
Sbjct: 671  IVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSL
Sbjct: 731  PQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF KHG +FS  K+NL+V+ GLVVIAKNPCLHPGDVRI
Sbjct: 791  ENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRI 830


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  611 bits (1575), Expect = e-172
 Identities = 296/400 (74%), Positives = 341/400 (85%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQR
Sbjct: 431  ELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKC
Sbjct: 491  VKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP S+ N +L D+ERN Y+FSDGIGMIS+DLA EVAEKL +  N
Sbjct: 551  AARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLALEVAEKLHLSVN 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRYAG KGVVACWP   +G  L LR SM+KFDSNHT LEICSWTRFQPGFLNRQ
Sbjct: 611  PPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            IVTLLS+L+V+D  FW MQ+ M+S L+ +L D D+AFDV+T SC + GNTAA+ML+AGF+
Sbjct: 671  IVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSL
Sbjct: 731  PQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRI
Sbjct: 791  ENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRI 830


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  611 bits (1575), Expect = e-172
 Identities = 294/400 (73%), Positives = 339/400 (84%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR+Y+ I+D+FLRVTFMDE +QT+N N LTYY APIVR++T N   QKT +F+R
Sbjct: 431  ELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL  GFYLCGRKYSFLAFSSNQLRDRSAWFFAED  T+V  I+NWMGKFTNRN+AKC
Sbjct: 491  VKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP ++A   L D+ERNNYIFSDGIGMI+ DLAKEVAEKL++  N
Sbjct: 551  AARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKLKLEVN 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             PCA+QIRYAG KGVVACWPA  +G RL LR SM KF SNHTTLEICSWTRFQPGFLNRQ
Sbjct: 611  PPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLS L+V D+ FW+MQ +MVS+L+ +  D D+AFDV+T SC + GNTAA+ML+AGF 
Sbjct: 671  IITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFN 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHL GML+ IR +QL  LREK+RIFV SGRWLMGCLDELGVLE+GQCFIQVS PSL
Sbjct: 731  PKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E CF KHGS FS++KK L+V+ G VV+AKNPCLHPGD+RI
Sbjct: 791  ESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRI 830


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score =  607 bits (1566), Expect = e-171
 Identities = 290/400 (72%), Positives = 338/400 (84%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLRKY+ ++DRFLRVTFMDE MQT+N NV+  Y APIV+E+T+N  PQKT ++ R
Sbjct: 431  ELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKVYVR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            +R IL  GF+LCGRKYSFLAFSSNQLRDRSAWFFAEDK+ ++  IKNWMG+FTNRNVAKC
Sbjct: 491  IRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP +Q NH+L D+ERN Y+FSDGIG I+ DLA EVAEKL++  +
Sbjct: 551  AARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLKLDRD 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRY G KGVVACWP+  +G RL LR SM KF S+HTTLEICSWTR QPGFLNRQ
Sbjct: 611  PPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLSAL V D+ FW MQE MVS+L  +L D D+AFDVLT SC + GN+AA+ML+AGF+
Sbjct: 671  IITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHLRGML+ I+ +QL  LREK+RIFV SGRWLMGCLDELGVLE GQCF+QVSTPSL
Sbjct: 731  PQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPSL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CFAKHGS F +T KNL+VI G VV+AKNPCLHPGD+RI
Sbjct: 791  ENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRI 830


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  606 bits (1562), Expect = e-171
 Identities = 290/400 (72%), Positives = 338/400 (84%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLRKY+ ++DRFLRVTFMDE +QT+N N L Y+AAPIVR +T    PQKT +F+R
Sbjct: 431  ELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            VR IL +GFYLCGR+YSFLAFSSNQLRDRSAWFFAED++  V +IK+WMGKFTN+N+AKC
Sbjct: 491  VRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYAT+EVPP + N  L D++RN Y FSDGIGMI+ DLA+EVAEKL+   +
Sbjct: 551  AARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKFDFD 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             PCA+QIRYAG KGVVACWP   +G RL LR+SM KF SNHT LEICSWTRFQPGFLNRQ
Sbjct: 611  PPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLSAL V D  FW+MQELMVS+L+ +L D D+AFDVLT SC + GN AA+ML+AGF+
Sbjct: 671  IITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHLRGML+ +R +QL  LREK+RIFV SGRWLMGCLDELGVLE GQCFIQVS   L
Sbjct: 731  PQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYL 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF KHGS+FS+TKKNL+V+ G VVIAKNPCLHPGD+RI
Sbjct: 791  ENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRI 830


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  603 bits (1555), Expect = e-170
 Identities = 284/400 (71%), Positives = 338/400 (84%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLRKY+ ++DRFLRVTFMDE +Q +N NVL YY APIVR++T N  PQKT +F+R
Sbjct: 434  ELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKR 493

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            VR IL +GFYLCGR+YSFLAFS+NQLRD+SAWFF+E+++ +V  +K+WMGKFTNRN+AKC
Sbjct: 494  VRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTNRNIAKC 553

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYAT+EVPP + N  L D+ERN Y+FSDGIG+I+ DLA+EVAEKL++  +
Sbjct: 554  AARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKLKLDID 613

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             PCA+QIRYAG KGVVACWP   +G RL LR SM KF SNHTTLEICSWTRFQPGFLNRQ
Sbjct: 614  PPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQ 673

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLS L V D  FW+MQE MVS+L+ +  + D+AFDVLT SC D GN AA+ML+AGF+
Sbjct: 674  IITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIMLSAGFK 733

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHLRGML+ +R +QL DLREK+RIFV SGRWLMGCLDELG+LE GQCFIQVS  SL
Sbjct: 734  PDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSL 793

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E CF KHG++FS+ +KNL+VI G VVIAKNPCLHPGDVR+
Sbjct: 794  EKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRV 833


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  602 bits (1552), Expect = e-169
 Identities = 290/400 (72%), Positives = 337/400 (84%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLRKY+ +SDRFLRVTFMDE MQT+N NVLTYY APIV+E+T N + QKT +F+R
Sbjct: 427  ELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTKVFKR 486

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ +L  GFYLCG++YSFLAFSSNQLRDRSAWFFAED   TV+ IK WMG+F NRN+AKC
Sbjct: 487  VKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGRFNNRNIAKC 546

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP ++ N  L+++ERN Y+FSDGIGMI+ DLAKEVAEKL++  N
Sbjct: 547  AARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKLKLDIN 606

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRYAG KGVVACWP   +G RL LR SM KFDS HT LEICSWTRFQPGFLNRQ
Sbjct: 607  PPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGFLNRQ 666

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            IVTLLS L V D+ FW+MQE M+ +L+ +L D D+AF+VLT SC + GN  A+ML+AGF+
Sbjct: 667  IVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLSAGFK 726

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P +EPHL+GML+ IR +QL  LREK+RIFV  GRWLMGCLDELGVLE GQCFIQVSTPSL
Sbjct: 727  PQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVSTPSL 786

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF+KHGS FS+TK NLEVI G VVIAKNPCLHPGD+RI
Sbjct: 787  ENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRI 826


>ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer
            arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X3 [Cicer
            arietinum]
          Length = 1201

 Score =  598 bits (1541), Expect = e-168
 Identities = 291/400 (72%), Positives = 337/400 (84%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR++R +SDRFLRVTFMDE MQTLN + L YY APIV+E+T N  PQKT +++R
Sbjct: 431  ELSNRVLRRFREVSDRFLRVTFMDEGMQTLNVHALNYYVAPIVKEITSNSFPQKTRIYKR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL +GFY CGRKYSFLAFSSNQLRDRSAWFFAED + T D I+NWMGKF  RNVAKC
Sbjct: 491  VKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDNNITCDDIRNWMGKFNQRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYA+VEV  ++ N  L DVERNNY+FSDGIG+I++DLA EVAEKL++   
Sbjct: 551  AARMGQCFSSTYASVEVAANEVNSMLADVERNNYVFSDGIGIITNDLAVEVAEKLKLD-K 609

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
            +P A+QIRYAG+KGVVACWP   +G RL LR SM KF S HTTLEIC+WTRFQPGFLNRQ
Sbjct: 610  VPSAYQIRYAGFKGVVACWPPKGDGIRLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQ 669

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLSAL+V D  FW MQE+M+SRL+ +L D D+AFDVLT SC +HGN AA+ML+ GF 
Sbjct: 670  IITLLSALDVSDGIFWDMQEVMISRLNQMLVDADVAFDVLTKSCAEHGNAAAIMLSCGFS 729

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHLRGML+SIR +QL  LREKSRIFV SGRWLMG LDELGVLE GQCF+QVSTPSL
Sbjct: 730  PKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSL 789

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF+KHGS FS+T K L+V+ GLVVIAKNPCLHPGDVR+
Sbjct: 790  ENCFSKHGSRFSET-KTLQVVKGLVVIAKNPCLHPGDVRV 828


>ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer
            arietinum]
          Length = 1247

 Score =  598 bits (1541), Expect = e-168
 Identities = 291/400 (72%), Positives = 337/400 (84%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR++R +SDRFLRVTFMDE MQTLN + L YY APIV+E+T N  PQKT +++R
Sbjct: 477  ELSNRVLRRFREVSDRFLRVTFMDEGMQTLNVHALNYYVAPIVKEITSNSFPQKTRIYKR 536

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL +GFY CGRKYSFLAFSSNQLRDRSAWFFAED + T D I+NWMGKF  RNVAKC
Sbjct: 537  VKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDNNITCDDIRNWMGKFNQRNVAKC 596

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYA+VEV  ++ N  L DVERNNY+FSDGIG+I++DLA EVAEKL++   
Sbjct: 597  AARMGQCFSSTYASVEVAANEVNSMLADVERNNYVFSDGIGIITNDLAVEVAEKLKLD-K 655

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
            +P A+QIRYAG+KGVVACWP   +G RL LR SM KF S HTTLEIC+WTRFQPGFLNRQ
Sbjct: 656  VPSAYQIRYAGFKGVVACWPPKGDGIRLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQ 715

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLSAL+V D  FW MQE+M+SRL+ +L D D+AFDVLT SC +HGN AA+ML+ GF 
Sbjct: 716  IITLLSALDVSDGIFWDMQEVMISRLNQMLVDADVAFDVLTKSCAEHGNAAAIMLSCGFS 775

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHLRGML+SIR +QL  LREKSRIFV SGRWLMG LDELGVLE GQCF+QVSTPSL
Sbjct: 776  PKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSL 835

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF+KHGS FS+T K L+V+ GLVVIAKNPCLHPGDVR+
Sbjct: 836  ENCFSKHGSRFSET-KTLQVVKGLVVIAKNPCLHPGDVRV 874


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  596 bits (1536), Expect = e-168
 Identities = 291/400 (72%), Positives = 332/400 (83%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLRKY+ ++DRFLRVTFMDE MQT+N NVLTYYAA IVR+VT     QKT +F+R
Sbjct: 431  ELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTGVFKR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            VR IL  GFYLCGRKYSFLAFS+NQLRD SAWFFAED  T+V  I  WMGKFTNRN+AKC
Sbjct: 491  VRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRNIAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP ++ N  L D+ERN Y+FSDGIG I+ DLAKEVA+KL++  N
Sbjct: 551  AARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLKLDLN 610

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             PCA+QIRYAG KGVVACWP   +G RL LR SM KF S+HTTLEICSWTRFQPGFLNRQ
Sbjct: 611  PPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGFLNRQ 670

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLS   V D+ FW MQ  MVS+L+ IL D D+AF+VLT SC++ GN AA+ML+AGF+
Sbjct: 671  IITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLSAGFK 730

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHLRG+L+ +R SQL  LREK+RIFV SGRWLMG LDELGVLE GQCFIQVS PS+
Sbjct: 731  PQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVSNPSV 790

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF KHGS F++TKKN EVI GLVVIAKNPCLHPGD+RI
Sbjct: 791  ENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRI 830


>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
          Length = 1201

 Score =  589 bits (1518), Expect = e-166
 Identities = 285/400 (71%), Positives = 338/400 (84%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR+YR +S+RFLRVTFMDE MQT+N N L YY APIV+E+T N  PQKT +++R
Sbjct: 431  ELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFPQKTRIYKR 490

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL +GF+ C RKY+FLAFSSNQLRDRSAWFFAED     D I++WMG+F+NRNVAKC
Sbjct: 491  VKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDWMGRFSNRNVAKC 550

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYATVEVP ++ N  L D+ERN Y+FSDGIG+I+ DLA EVAEKL++   
Sbjct: 551  AARMGQCFSSTYATVEVPATEVNSMLPDIERNKYVFSDGIGIITPDLAGEVAEKLKLDI- 609

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRYAG+KGVVA WPA  +G RL LRTSM KF S+HTTLEIC+WTRFQPGFLNRQ
Sbjct: 610  APSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEICAWTRFQPGFLNRQ 669

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLSALEV D+ FW+MQE+M+S+L+ +L + D+AFDVLT SC +HGN AA+ML+ GF 
Sbjct: 670  IITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGNAAAIMLSCGFS 729

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHL+GML+SIR +QL  LREKSRIFV SGRWLMG LDELGVLE GQCF+QVSTPSL
Sbjct: 730  PQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSL 789

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF+KHGS FS+T K+L+V+ G VVIAKNPCLHPGDVRI
Sbjct: 790  ENCFSKHGSRFSET-KSLQVVKGYVVIAKNPCLHPGDVRI 828


>ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1188

 Score =  587 bits (1514), Expect = e-165
 Identities = 285/400 (71%), Positives = 333/400 (83%)
 Frame = +1

Query: 1    ELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQR 180
            ELSNRVLR++R +SDRFLRVTFMDE  QTLN   L YY APIV+E+T N   QKT +++R
Sbjct: 418  ELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKR 477

Query: 181  VRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKC 360
            V+ IL  GFY CGRKYSFLAFSSNQLRDRSAWFFAEDK  T D I+NWMG+F  +NVAKC
Sbjct: 478  VKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQKNVAKC 537

Query: 361  AARMGQCFSSTYATVEVPPSQANHKLKDVERNNYIFSDGIGMISSDLAKEVAEKLQMHTN 540
            AARMGQCFSSTYA+VEVP ++ N  L DVERNNY+FSDGIG+I++DLA EVAEKL++   
Sbjct: 538  AARMGQCFSSTYASVEVPANEVNSMLPDVERNNYVFSDGIGIITTDLAVEVAEKLKLD-K 596

Query: 541  LPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQ 720
             P A+QIRYAG+KGVVACWPA  +G +L LR SM KF S HTTLEIC+WTRFQPGFLNRQ
Sbjct: 597  APSAYQIRYAGFKGVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQ 656

Query: 721  IVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFR 900
            I+TLLSAL+V D+ FW+MQE M+S L+ +L D D+A+DVLT SC +HGN AA+ML+ GF 
Sbjct: 657  IITLLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVLTKSCAEHGNAAAIMLSCGFS 716

Query: 901  PSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSL 1080
            P  EPHLRGML+SIR +QL  LREKSRIFV SGRWLMG LDELGVLE GQCF+QVSTPSL
Sbjct: 717  PKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSL 776

Query: 1081 EDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRI 1200
            E+CF+KHGS FS+T K + V+ G+VVIAKNPCLHPGDVR+
Sbjct: 777  ENCFSKHGSRFSET-KTVHVVKGIVVIAKNPCLHPGDVRV 815