BLASTX nr result
ID: Mentha24_contig00017656
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha24_contig00017656
(1461 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus... 478 e-149
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 448 e-129
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras... 448 e-128
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] 449 e-128
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 448 e-128
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras... 447 e-128
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 447 e-128
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer... 444 e-127
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 442 e-124
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun... 441 e-122
ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citr... 404 e-116
ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 403 e-116
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu... 415 e-113
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m... 415 e-113
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [... 414 e-113
ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob... 413 e-112
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob... 413 e-112
gb|EXB44918.1| DNA-directed RNA polymerase 1 [Morus notabilis] 410 e-112
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 410 e-111
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun... 409 e-111
>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
Length = 983
Score = 478 bits (1229), Expect(2) = e-149
Identities = 230/307 (74%), Positives = 257/307 (83%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWE AAKEYQELL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LCK+
Sbjct: 156 KIETEAWENAAKEYQELLEDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKN 215
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
+APYFDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAIEHEVRIHKFL
Sbjct: 216 RGAYAPYFDQLPAEMMAVITMHKLMGLLMTGGGNGSARVVQAACHIGEAIEHEVRIHKFL 275
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
+ KRKNALNRT +E DP AKEQ+RL VR IV QDDLK WGQ+A
Sbjct: 276 DNCKRKNALNRTSEEGPDPEAKEQDRLRKKVKILMKKQKVQQVRNIVRHQDDLKPWGQDA 335
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPI 204
Q+KVGCRLIQIL TAYIQPP+DQ +D PDIRPAFVH LK VET K S+RYGVIECDP+
Sbjct: 336 QVKVGCRLIQILTQTAYIQPPVDQRDDGAPDIRPAFVHTLKCVETLKGSRRYGVIECDPL 395
Query: 203 VRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPRE 24
VRKG+EKTA+HMVIPYMPMLVPPLNWTGYERGAYLFLPSY+MRTHGA+QQREAVK+ P++
Sbjct: 396 VRKGMEKTARHMVIPYMPMLVPPLNWTGYERGAYLFLPSYMMRTHGAKQQREAVKRTPKQ 455
Query: 23 QLEPVFK 3
+LEP+F+
Sbjct: 456 ELEPIFQ 462
Score = 79.0 bits (193), Expect(2) = e-149
Identities = 62/151 (41%), Positives = 80/151 (52%), Gaps = 24/151 (15%)
Frame = -3
Query: 1363 MWRSLWKQPCLRKLK------PSISAFSAVKPSQNSILSEGIIRFPLQSSVN-----LGF 1217
MWR+L KQ LR K PS +AFSA K ++SI E + L+S +N LGF
Sbjct: 1 MWRNLSKQSYLRNFKVFSESHPSPNAFSAGKSPKDSIFVENAVPRQLRSCINTCGSELGF 60
Query: 1216 LR-------------DTYAFRRDPFRFSGNARGYVAAAEALVSTSXXXXXXXXXXXEIQE 1076
R YA FRF G+ RGY AAAEALVSTS E+QE
Sbjct: 61 RRALVFWRPPREASCPNYAISSHTFRFFGSTRGYAAAAEALVSTS------EEEVDELQE 114
Query: 1075 LVDKFNKENVVVKSPDTNQKRRQQPKKMGGM 983
L+++ NKE + VKS T+ + ++QPK +GGM
Sbjct: 115 LIEEINKE-INVKS--TDNREQKQPKLVGGM 142
>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
tuberosum]
Length = 993
Score = 448 bits (1152), Expect(2) = e-129
Identities = 216/307 (70%), Positives = 255/307 (83%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
KVETEAWE+AAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +
Sbjct: 167 KVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKN 226
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
+AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAIEHE RIH+FL
Sbjct: 227 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFL 286
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
E +K KNAL+ + +E KE+ERL VR+IV +QDD K WGQ+
Sbjct: 287 EKTK-KNALDGSLEETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDN 345
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPI 204
+KVGC+LIQIL++TAYIQPP DQ++D PPDIRPAF+H LK+VET K S+RYGVI+CDP+
Sbjct: 346 LVKVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTVETVKGSRRYGVIQCDPL 405
Query: 203 VRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPRE 24
VRKGL+KTA+HMVIPYMPMLVPP NW+GY+RGAYLFLPSYIMRTHGA+QQREAVK+ P++
Sbjct: 406 VRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKK 465
Query: 23 QLEPVFK 3
QLEPVF+
Sbjct: 466 QLEPVFQ 472
Score = 41.6 bits (96), Expect(2) = e-129
Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 38/165 (23%)
Frame = -3
Query: 1363 MWRSLWKQPCLRKLKPS--------ISAFSAVKPSQNSILSEGIIRFP----LQSSV--- 1229
MWR + KQ RKL+ + +F +P Q L E I R P QSS+
Sbjct: 1 MWRYISKQAYSRKLRNTHDSDFLGFAQSFGKTRPLQG--LCEEIYRNPNLGVSQSSIFTR 58
Query: 1228 -------------------NLGFLRDTYAFR-RDPFRFSGNA---RGYVAAAEALVSTSX 1118
LGF + R + FR G+ R Y +AAEA+ STS
Sbjct: 59 VNGKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCGSLGILRSYGSAAEAIASTSE 118
Query: 1117 XXXXXXXXXXEIQELVDKFNKENVVVKSPDTNQKRRQQPKKMGGM 983
IQEL+++ NKEN +K+ + +QPK +GGM
Sbjct: 119 EDIDE------IQELIEEMNKENEALKT----NLQPKQPKTVGGM 153
>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
subunit RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 448 bits (1153), Expect(2) = e-128
Identities = 215/307 (70%), Positives = 253/307 (82%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
KVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
+AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAIEHE RIH+FL
Sbjct: 235 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFL 294
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
E +K+ NAL+ ++ KE+ER+ VR+IV +QDD K WGQ+
Sbjct: 295 EKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDN 354
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPI 204
+KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+
Sbjct: 355 LVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPL 414
Query: 203 VRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPRE 24
VRKGL+KTA+HMVIPYMPMLVPP +W GY++GAYLFLPSYIMRTHGA+QQREAVK+ P++
Sbjct: 415 VRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKK 474
Query: 23 QLEPVFK 3
QLEPVF+
Sbjct: 475 QLEPVFQ 481
Score = 40.4 bits (93), Expect(2) = e-128
Identities = 52/174 (29%), Positives = 73/174 (41%), Gaps = 47/174 (27%)
Frame = -3
Query: 1363 MWRSLWKQPCLRKLKPS-----------ISAFSAVKP----------------SQNSILS 1265
MWR + KQ RK + S S+F +P SQNSI S
Sbjct: 1 MWRYISKQAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIFS 60
Query: 1264 ---------EGIIRFPLQSSVN--LGFLRDT-YAFRRDPFRFSGNA--------RGYVAA 1145
EGI +SS N LG +++ ++ + FR G R Y +A
Sbjct: 61 RISRKVRHLEGICE---ESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA 117
Query: 1144 AEALVSTSXXXXXXXXXXXEIQELVDKFNKENVVVKSPDTNQKRRQQPKKMGGM 983
AEA+ STS IQEL+++ NKEN +K+ + +QPK +GGM
Sbjct: 118 AEAIASTSEEDIDE------IQELIEEMNKENEALKT----NLQPKQPKTIGGM 161
>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 449 bits (1156), Expect(2) = e-128
Identities = 216/307 (70%), Positives = 253/307 (82%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
KVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
+AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAIEHE RIH+FL
Sbjct: 235 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFL 294
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
E +K+ NAL+ ++ KE+ERL VR+IV +QDD K WGQ+
Sbjct: 295 EKTKKSNALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDN 354
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPI 204
+KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+
Sbjct: 355 LVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPL 414
Query: 203 VRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPRE 24
VRKGL+KTA+HMVIPYMPMLVPP +W GY++GAYLFLPSYIMRTHGA+QQREAVK+ P++
Sbjct: 415 VRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKK 474
Query: 23 QLEPVFK 3
QLEPVF+
Sbjct: 475 QLEPVFQ 481
Score = 38.9 bits (89), Expect(2) = e-128
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = -3
Query: 1171 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKENVVVKSPDTNQKRRQQPKKM 992
G R Y +AAEA+ STS IQEL+++ NKEN +K+ + +QPK +
Sbjct: 109 GFLRSYGSAAEAIASTSEEDIDE------IQELIEEMNKENEALKT----NLQPKQPKTI 158
Query: 991 GGM 983
GGM
Sbjct: 159 GGM 161
>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
lycopersicum]
Length = 993
Score = 448 bits (1152), Expect(2) = e-128
Identities = 216/307 (70%), Positives = 255/307 (83%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
KVETEAWE+AAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPL+DAIAAEQ+LC +
Sbjct: 167 KVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKN 226
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
+AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAIEHE RIH+FL
Sbjct: 227 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFL 286
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
E +K KNAL+ + +E KE+ERL VR+IV +QDD K WGQ+
Sbjct: 287 EKTK-KNALDGSLEETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDN 345
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPI 204
+KVGCRLIQIL++TAYIQPP DQ+ED PPDIRPAF+H LK+V+T K S+RYGVI+CDP+
Sbjct: 346 LVKVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTVDTVKGSRRYGVIQCDPL 405
Query: 203 VRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPRE 24
VRKGL+KTA+HMVIPYMPMLVPP NW+GY+RGAYLFLPSYIMRTHGA+QQREAVK+ P++
Sbjct: 406 VRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKK 465
Query: 23 QLEPVFK 3
QLEPVF+
Sbjct: 466 QLEPVFQ 472
Score = 39.7 bits (91), Expect(2) = e-128
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = -3
Query: 1225 LGFLRDTYAFR-RDPFRFSGNA---RGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFN 1058
LGF + R + FR G+ R Y +AAEA+ STS IQEL+++ N
Sbjct: 79 LGFSESSIFSRVKGDFRVCGSLGVLRSYGSAAEAIASTSEEDIDE------IQELIEEMN 132
Query: 1057 KENVVVKSPDTNQKRRQQPKKMGGM 983
KEN +K+ + +QPK +GGM
Sbjct: 133 KENEALKT----NLQPKQPKTVGGM 153
>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1B; Flags: Precursor
Length = 1002
Score = 447 bits (1149), Expect(2) = e-128
Identities = 215/307 (70%), Positives = 252/307 (82%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
KVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
+AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA ++GEAIEHE RIH+FL
Sbjct: 235 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFL 294
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
E +K+ NAL+ +E KE+ERL VR+IV +QDD K WGQ+
Sbjct: 295 EKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDN 354
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPI 204
+KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+
Sbjct: 355 LVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPL 414
Query: 203 VRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPRE 24
VRKGL+KTA+HMVIPYMPMLVPP +W GY++G YLFLPSYIMRTHGA+QQREAVK+ P++
Sbjct: 415 VRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKK 474
Query: 23 QLEPVFK 3
QLEPVF+
Sbjct: 475 QLEPVFQ 481
Score = 40.0 bits (92), Expect(2) = e-128
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 20/121 (16%)
Frame = -3
Query: 1285 SQNSILS---------EGIIRFPLQSSVN--LGFLRD-TYAFRRDPFRFSGNA------- 1163
SQNSI S EGI +SS N LG ++ T++ + FR G
Sbjct: 54 SQNSIFSRISRKVRHLEGICE---ESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGR 110
Query: 1162 -RGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKENVVVKSPDTNQKRRQQPKKMGG 986
R Y +AAEA+VSTS EIQEL+++ +KEN +K+ + +QPK +GG
Sbjct: 111 LRSYGSAAEAIVSTS------EEDIDEIQELIEEMDKENEALKA----NLQPKQPKTIGG 160
Query: 985 M 983
M
Sbjct: 161 M 161
>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 447 bits (1149), Expect(2) = e-128
Identities = 215/307 (70%), Positives = 252/307 (82%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
KVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
+AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA ++GEAIEHE RIH+FL
Sbjct: 235 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFL 294
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
E +K+ NAL+ +E KE+ERL VR+IV +QDD K WGQ+
Sbjct: 295 EKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDN 354
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPI 204
+KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+
Sbjct: 355 LVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPL 414
Query: 203 VRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPRE 24
VRKGL+KTA+HMVIPYMPMLVPP +W GY++G YLFLPSYIMRTHGA+QQREAVK+ P++
Sbjct: 415 VRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKK 474
Query: 23 QLEPVFK 3
QLEPVF+
Sbjct: 475 QLEPVFQ 481
Score = 40.0 bits (92), Expect(2) = e-128
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 20/121 (16%)
Frame = -3
Query: 1285 SQNSILS---------EGIIRFPLQSSVN--LGFLRD-TYAFRRDPFRFSGNA------- 1163
SQNSI S EGI +SS N LG ++ T++ + FR G
Sbjct: 54 SQNSIFSRISRKVRHLEGICE---ESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGR 110
Query: 1162 -RGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKENVVVKSPDTNQKRRQQPKKMGG 986
R Y +AAEA+VSTS EIQEL+++ +KEN +K+ + +QPK +GG
Sbjct: 111 LRSYGSAAEAIVSTS------EEDIDEIQELIEEMDKENEALKA----NLQPKQPKTIGG 160
Query: 985 M 983
M
Sbjct: 161 M 161
>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 444 bits (1142), Expect(2) = e-127
Identities = 214/307 (69%), Positives = 251/307 (81%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
KVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
AP+FDQLPA+MMAVITMHKLM LMTGG RV+QAA H+GEAIEHE RIH+FL
Sbjct: 235 RGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHRFL 294
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
E +K+ NAL+ ++ KE+ER+ VR+IV +QDD K WGQ+
Sbjct: 295 EKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDN 354
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPI 204
+KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+
Sbjct: 355 LVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPL 414
Query: 203 VRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPRE 24
VRKGL+KTA+HMVIPYMPMLVPP +W GY++GAYLFLPSYIMRTHGA+QQREAVK+ P++
Sbjct: 415 VRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKK 474
Query: 23 QLEPVFK 3
QLEPVF+
Sbjct: 475 QLEPVFQ 481
Score = 40.4 bits (93), Expect(2) = e-127
Identities = 52/174 (29%), Positives = 73/174 (41%), Gaps = 47/174 (27%)
Frame = -3
Query: 1363 MWRSLWKQPCLRKLKPS-----------ISAFSAVKP----------------SQNSILS 1265
MWR + KQ RK + S S+F +P SQNSI S
Sbjct: 1 MWRYISKQAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIFS 60
Query: 1264 ---------EGIIRFPLQSSVN--LGFLRDT-YAFRRDPFRFSGNA--------RGYVAA 1145
EGI +SS N LG +++ ++ + FR G R Y +A
Sbjct: 61 RISRKVRHLEGICE---ESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA 117
Query: 1144 AEALVSTSXXXXXXXXXXXEIQELVDKFNKENVVVKSPDTNQKRRQQPKKMGGM 983
AEA+ STS IQEL+++ NKEN +K+ + +QPK +GGM
Sbjct: 118 AEAIASTSEEDTDE------IQELIEEMNKENEALKT----NLQPKQPKTIGGM 161
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 442 bits (1137), Expect(2) = e-124
Identities = 214/309 (69%), Positives = 249/309 (80%), Gaps = 2/309 (0%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWEEAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IAAEQ+LCK
Sbjct: 149 KMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKN 208
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
+APYFD LPADMMAVITMHKLM LLMTG RV+QAA H+GEAIEHEVRI +F+
Sbjct: 209 RAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFM 268
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
E +K+K+A + D +P KEQE+L VR+IV RQDD K WGQ+A
Sbjct: 269 EKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDA 328
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECD 210
+KVG RLI++L++TAYIQPP DQ+ D PPDIRPAFVH LK+V ET K ++RYGVIECD
Sbjct: 329 NVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECD 388
Query: 209 PIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAP 30
P+VRKGLEKTA+HMVIPYMPMLVPPLNWTGY++GAYLFLPSY+MR HGARQQREA+K+AP
Sbjct: 389 PLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAP 448
Query: 29 REQLEPVFK 3
R+ LEP F+
Sbjct: 449 RKALEPAFE 457
Score = 33.1 bits (74), Expect(2) = e-124
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 23/151 (15%)
Frame = -3
Query: 1363 MWRSLWKQPCLRKLKPSI--SAFSAVKPSQNSILSEGIIRFPLQSSVN------------ 1226
MWR+L K R+L+ S S+FS + + Q VN
Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRIG 60
Query: 1225 -LGFLRDT-----YAFRRDPFRFSG---NARGYVAAAEALVSTSXXXXXXXXXXXEIQEL 1073
L F +D + + P F G +GY +AAEA+ S E+QEL
Sbjct: 61 VLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEE-----DMSGVDEVQEL 115
Query: 1072 VDKFNKENVVVKSPDTNQKRRQQPKKMGGMA 980
V++ NK K +QPK +GG+A
Sbjct: 116 VEEVNK----------GDKLEKQPKLIGGVA 136
>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
gi|462422319|gb|EMJ26582.1| hypothetical protein
PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 441 bits (1133), Expect(2) = e-122
Identities = 220/325 (67%), Positives = 257/325 (79%), Gaps = 18/325 (5%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAW+EAAKEYQELL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA+Q+ CK +
Sbjct: 161 KLETEAWQEAAKEYQELLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNS 220
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTG-GCRNGVRVIQAAGHVGEAIEHEVRIHKF 567
+HAPYFD LPAD MAVITMHKLM LLMT G VRV+QAA +GEAIEHEVRIH+F
Sbjct: 221 RQSHAPYFDHLPADKMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRF 280
Query: 566 LE-TSKRKNALNRTCD--------------EERDPAAKEQERLTXXXXXXXXXXXXXXVR 432
LE T K+KN +++ + +E++ KEQERL VR
Sbjct: 281 LEKTKKKKNTIDKKAEADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVR 340
Query: 431 RIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV- 255
IV Q+DLK WGQEA +KVGCRLIQ+LMDTAYIQPP+DQ+ D PPDIRPAFVH LK++
Sbjct: 341 GIVKEQEDLKPWGQEAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTIT 400
Query: 254 -ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIM 78
+T KTS+RYGVIECDPIVRKG+EKTA+HMV+PYMPMLVPP+NWTGY+RGAYLFLPSY+M
Sbjct: 401 RDTQKTSRRYGVIECDPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVM 460
Query: 77 RTHGARQQREAVKKAPREQLEPVFK 3
RTHGA+QQRE VK+ PR+QLEPVF+
Sbjct: 461 RTHGAKQQREVVKRTPRKQLEPVFE 485
Score = 28.5 bits (62), Expect(2) = e-122
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -3
Query: 1177 FSGNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKENVVVKSPDTNQKR 1013
F A+GY + AEA+ ST EIQE+++ +EN +V+S KR
Sbjct: 90 FCNYAKGYASVAEAIASTD--GEEDSSGSEEIQEMLEDLIRENNMVESHFKQPKR 142
>ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citrus clementina]
gi|557540028|gb|ESR51072.1| hypothetical protein
CICLE_v10030633mg [Citrus clementina]
Length = 980
Score = 404 bits (1039), Expect(2) = e-116
Identities = 201/315 (63%), Positives = 237/315 (75%), Gaps = 8/315 (2%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPYVKSLFLGWFEPLRDAIA +Q +D +
Sbjct: 147 KIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWK 206
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
T+APYF+ LPADMMAVITMHKL+ LLMT VRV+QAA +GEAIE+E RI F
Sbjct: 207 HMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIRSFF 264
Query: 563 ETSKRKNALNRTCDEERDPAA-------KEQERLTXXXXXXXXXXXXXXVRRIVSRQDDL 405
E++K+KNA + + + +P KEQE+L VR IV DL
Sbjct: 265 ESTKKKNATDNNLEGDSEPVTNDPEKLIKEQEKLKKRVTSLIKKQKLRQVRGIVKGHVDL 324
Query: 404 KSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKS-VETGKTSKRY 228
K WGQ+A +KVGCRLIQ+LM+TAYIQPP+DQ+ D+PPDIRPAFVH LKS + +RY
Sbjct: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
Query: 227 GVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQRE 48
GVIECDP+VRKGLEKT +HM+IPYMPMLVPPLNW GY RG + FLPSY+MRTHGARQQRE
Sbjct: 385 GVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
Query: 47 AVKKAPREQLEPVFK 3
+K PR QLEPVF+
Sbjct: 445 TIKMTPRSQLEPVFQ 459
Score = 43.9 bits (102), Expect(2) = e-116
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Frame = -3
Query: 1363 MWRSLWKQPCLRKLKPSISAFSAVKPSQNSILSEGIIRFPLQSSVN-----LGFLRDTYA 1199
MWR+L +Q R K FS K SQ + + I Q+ ++ LGF R ++
Sbjct: 1 MWRNLARQSSTRNFK-----FSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFL 55
Query: 1198 -----------FRRDPFRFSG-NARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNK 1055
F + + F +R Y +AAEA+ S S +QEL+D+FN+
Sbjct: 56 SSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEE-----VQELIDQFNE 110
Query: 1054 ENVVVKSPDTNQKRRQQPKKMG-GMAT 977
+ V + D++ +QPKK G GM T
Sbjct: 111 KGVSIL--DSSSMLDKQPKKKGTGMGT 135
>ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Citrus
sinensis]
Length = 980
Score = 403 bits (1036), Expect(2) = e-116
Identities = 200/315 (63%), Positives = 237/315 (75%), Gaps = 8/315 (2%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPYVKSLFLGWFEPLRDAIA +Q +D +
Sbjct: 147 KIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWK 206
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
T+APYF+ LPADMMAVITMHKL+ LLMT VRV+QAA +GEAIE+E RI F
Sbjct: 207 HMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIRSFF 264
Query: 563 ETSKRKNALNRTCDEERDPAA-------KEQERLTXXXXXXXXXXXXXXVRRIVSRQDDL 405
E++K+KNA + + + +P KEQ++L VR IV DL
Sbjct: 265 ESTKKKNATDNNLEGDSEPVTNDPEKLIKEQDKLKKRVTSLIKKQKLRQVRGIVKGHVDL 324
Query: 404 KSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKS-VETGKTSKRY 228
K WGQ+A +KVGCRLIQ+LM+TAYIQPP+DQ+ D+PPDIRPAFVH LKS + +RY
Sbjct: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
Query: 227 GVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQRE 48
GVIECDP+VRKGLEKT +HM+IPYMPMLVPPLNW GY RG + FLPSY+MRTHGARQQRE
Sbjct: 385 GVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
Query: 47 AVKKAPREQLEPVFK 3
+K PR QLEPVF+
Sbjct: 445 TIKMTPRSQLEPVFQ 459
Score = 43.9 bits (102), Expect(2) = e-116
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Frame = -3
Query: 1363 MWRSLWKQPCLRKLKPSISAFSAVKPSQNSILSEGIIRFPLQSSVN-----LGFLRDTYA 1199
MWR+L +Q R K FS K SQ + + I Q+ ++ LGF R ++
Sbjct: 1 MWRNLARQSSTRNFK-----FSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFL 55
Query: 1198 -----------FRRDPFRFSG-NARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNK 1055
F + + F +R Y +AAEA+ S S +QEL+D+FN+
Sbjct: 56 SSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEE-----VQELIDQFNE 110
Query: 1054 ENVVVKSPDTNQKRRQQPKKMG-GMAT 977
+ V + D++ +QPKK G GM T
Sbjct: 111 KGVSIL--DSSSMLDKQPKKKGTGMGT 135
>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
gi|550332836|gb|EEE88785.2| hypothetical protein
POPTR_0008s11200g [Populus trichocarpa]
Length = 988
Score = 415 bits (1067), Expect = e-113
Identities = 213/318 (66%), Positives = 250/318 (78%), Gaps = 11/318 (3%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWE+AA+EYQE+L DMCEQKLAPNLPYVKSLFLGWFEPLRDAI AEQELCK + R
Sbjct: 151 KMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVAEQELCKRNLR 210
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTG-GCRNGVRVIQAAGHVGEAIEHEVRIHKF 567
+H +F LPADMMAVITMHKLM LLMTG G +RV+QAA VGEAIEHE RIHKF
Sbjct: 211 -VSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASIRVVQAASVVGEAIEHEGRIHKF 269
Query: 566 LE-TSKRKNALNRTCDEERDPA-------AKEQERLTXXXXXXXXXXXXXXVRRIVSRQD 411
LE T KRKN + + E D A +KEQE+L VRRIV D
Sbjct: 270 LEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQEKLRKKVTTLIKKQKVQQVRRIVKGHD 329
Query: 410 DLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTS 237
D + WGQE +KVG RLIQ++++TAYIQPP+DQ+ D PPDIRPAFVH LK++ +T K+S
Sbjct: 330 DSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSS 389
Query: 236 KRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQ 57
+RYGVIECDP+VRKGLEK+A+HMVIPYMPMLVPPLNWTGY++GA+LFLPSY+MR HG++Q
Sbjct: 390 RRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQ 449
Query: 56 QREAVKKAPREQLEPVFK 3
QR+AVK+A R QLEPVFK
Sbjct: 450 QRDAVKRASRNQLEPVFK 467
>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
DNA-directed RNA polymerase 2, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 997
Score = 415 bits (1066), Expect = e-113
Identities = 209/319 (65%), Positives = 246/319 (77%), Gaps = 12/319 (3%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWEEAA+EYQELL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA EQEL ++ +
Sbjct: 158 KMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNN 217
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNG-VRVIQAAGHVGEAIEHEVRIHKF 567
+H PYFD LPADMMAVITMHKLM LLMT NG VRV+QAA VGEAIEHE RIH+F
Sbjct: 218 KLSHGPYFDALPADMMAVITMHKLMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRF 277
Query: 566 LETSKRKNALNRTCDEE---------RDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 414
LE +K+K + + E + AKEQE+L VR +
Sbjct: 278 LEKTKKKKKSTKNEEPEGKLEPVTSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGH 337
Query: 413 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKT 240
DD WGQEAQ+KVGCRLIQ+L++TAYIQPP++Q+ D PDIRPAF+H LK+V +T KT
Sbjct: 338 DDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKT 397
Query: 239 SKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGAR 60
S+RYGVIECDPIVR GLEK+A+HMVIPYMPMLVPPLNW GY++GAYLFLPSY+MRTHGA+
Sbjct: 398 SRRYGVIECDPIVRNGLEKSARHMVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAK 457
Query: 59 QQREAVKKAPREQLEPVFK 3
QQR AVK+ P +QLEPV++
Sbjct: 458 QQRNAVKRTPWKQLEPVYE 476
>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 862
Score = 414 bits (1063), Expect = e-113
Identities = 211/318 (66%), Positives = 245/318 (77%), Gaps = 11/318 (3%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWE+ A+EYQE+L DMCEQKLAPNLPYVKSLFLGWFEPLRDAI AEQELCK +SR
Sbjct: 25 KMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAILAEQELCKVNSR 84
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTG-GCRNGVRVIQAAGHVGEAIEHEVRIHKF 567
H YF+ LPADMMAVITMHKLM LLMTG G +RV+QAA VGEAIE+E +IHKF
Sbjct: 85 -VPHRAYFNDLPADMMAVITMHKLMGLLMTGNGGTASIRVVQAASVVGEAIENEAKIHKF 143
Query: 566 LETSKRKNALNRTCDEERDPAA--------KEQERLTXXXXXXXXXXXXXXVRRIVSRQD 411
LE +K++ L E AA KEQE+L VRRIV D
Sbjct: 144 LEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRKKVTTLMKKQKVHQVRRIVKGHD 203
Query: 410 DLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTS 237
D WGQEA LKVG RLIQ++++TAYIQPP+DQ+ D PPDIRPAFVH LK++ +T K+S
Sbjct: 204 DSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSS 263
Query: 236 KRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQ 57
+RYGVIECDP+VRKGLEK+A+HMVIPYMPMLVPPLNWTGY++GAY FLPSY+MR HGA+Q
Sbjct: 264 RRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAYFFLPSYVMRIHGAKQ 323
Query: 56 QREAVKKAPREQLEPVFK 3
QR A+K+A R QLEPVFK
Sbjct: 324 QRVAIKRASRNQLEPVFK 341
>ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase
isoform 3 [Theobroma cacao]
Length = 932
Score = 413 bits (1061), Expect = e-112
Identities = 204/317 (64%), Positives = 246/317 (77%), Gaps = 10/317 (3%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWEEAAKEYQELL+DMCE KLAPNLPY+KSLFLGWFEPLRD+I EQELCK++ R
Sbjct: 160 KIETEAWEEAAKEYQELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENCR 219
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGC-RNGVRVIQAAGHVGEAIEHEVRIHKF 567
+HA YF++L ADMMAV+TMHKLM LLMT G+RV+QAA +GEAIEHE +I F
Sbjct: 220 -ISHAAYFNELSADMMAVVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSF 278
Query: 566 LETSKRKNALNRTCDEERDPA-------AKEQERLTXXXXXXXXXXXXXXVRRIVSRQDD 408
L +K+K ++ D E +P K+QE+L VR+IV D
Sbjct: 279 LGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDT 338
Query: 407 LKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSK 234
KSWGQEA +KVGCRLIQ+L++ AYIQPP+DQ+ D PPDIRPAFVH+LK++ + K S+
Sbjct: 339 SKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSR 398
Query: 233 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 54
RYGVIECD +VRKGLEKTA+HMVIPYMPMLVPP NWTGY+RGAYLFLPSY+MRTHGA+QQ
Sbjct: 399 RYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQ 458
Query: 53 REAVKKAPREQLEPVFK 3
RE VK+ PR+QLEP+F+
Sbjct: 459 RETVKRTPRKQLEPIFE 475
>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|590698457|ref|XP_007045722.1| DNA-directed RNA
polymerase isoform 1 [Theobroma cacao]
gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
Length = 996
Score = 413 bits (1061), Expect = e-112
Identities = 204/317 (64%), Positives = 246/317 (77%), Gaps = 10/317 (3%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWEEAAKEYQELL+DMCE KLAPNLPY+KSLFLGWFEPLRD+I EQELCK++ R
Sbjct: 160 KIETEAWEEAAKEYQELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENCR 219
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGC-RNGVRVIQAAGHVGEAIEHEVRIHKF 567
+HA YF++L ADMMAV+TMHKLM LLMT G+RV+QAA +GEAIEHE +I F
Sbjct: 220 -ISHAAYFNELSADMMAVVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSF 278
Query: 566 LETSKRKNALNRTCDEERDPA-------AKEQERLTXXXXXXXXXXXXXXVRRIVSRQDD 408
L +K+K ++ D E +P K+QE+L VR+IV D
Sbjct: 279 LGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDT 338
Query: 407 LKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSK 234
KSWGQEA +KVGCRLIQ+L++ AYIQPP+DQ+ D PPDIRPAFVH+LK++ + K S+
Sbjct: 339 SKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSR 398
Query: 233 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 54
RYGVIECD +VRKGLEKTA+HMVIPYMPMLVPP NWTGY+RGAYLFLPSY+MRTHGA+QQ
Sbjct: 399 RYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQ 458
Query: 53 REAVKKAPREQLEPVFK 3
RE VK+ PR+QLEP+F+
Sbjct: 459 RETVKRTPRKQLEPIFE 475
>gb|EXB44918.1| DNA-directed RNA polymerase 1 [Morus notabilis]
Length = 1023
Score = 410 bits (1054), Expect = e-112
Identities = 203/319 (63%), Positives = 245/319 (76%), Gaps = 12/319 (3%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWE+AAKEY+EL+VDMCE+KLAPNLPYVKSL LGWFEPLRDAIAA+QE C++
Sbjct: 161 KIETEAWEQAAKEYRELMVDMCERKLAPNLPYVKSLLLGWFEPLRDAIAADQEACREMKN 220
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMT-GGCRNGVRVIQAAGHVGEAIEHEVRIHKF 567
T+APYFD LPAD+MAVI MHKLM L+MT G +RV+QAA +GEA+EHEV+I +F
Sbjct: 221 KPTYAPYFDHLPADVMAVIAMHKLMGLMMTNSGIVGCIRVVQAASQIGEALEHEVKIQRF 280
Query: 566 LETSKRKNALNRTCDEERDPA---------AKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 414
E +K+K T E+ K QE+L VR IV R
Sbjct: 281 FEKTKKKKKKKNTNGEDVSDVVSAEQGNLNGKGQEKLRKKVTQMIKKQKVQQVRIIVDRV 340
Query: 413 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKT 240
DD K WGQE +KVGCRLIQ+LM+TAYIQPP+DQ++D+PPDIRPAFVH+LK+V +T KT
Sbjct: 341 DDSKPWGQEGHVKVGCRLIQLLMETAYIQPPVDQLDDSPPDIRPAFVHSLKTVVKDTRKT 400
Query: 239 SKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGAR 60
S+RYGVIECDP+VR+GLEKTA+HMVIPYMPMLVP WTGY++GAYLFLPS +MRTHGA+
Sbjct: 401 SRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVPANKWTGYDKGAYLFLPSQVMRTHGAK 460
Query: 59 QQREAVKKAPREQLEPVFK 3
QQREAVK+AP + LEPVF+
Sbjct: 461 QQREAVKRAPMKNLEPVFE 479
>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Citrus sinensis]
Length = 1026
Score = 410 bits (1053), Expect = e-111
Identities = 203/312 (65%), Positives = 242/312 (77%), Gaps = 5/312 (1%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWE+AA EY+ELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA EQE C+ +
Sbjct: 194 KIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKH 253
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
+APYFDQLPADMMAVITMHKLM LLMTGG RV+QAA +G+AIE EVRIHKFL
Sbjct: 254 KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFL 313
Query: 563 ETSKRKNALNRTCDEERDPA---AKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWG 393
E +K+KN DEE D + EQE+L VRRIV QDD K WG
Sbjct: 314 EKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWG 373
Query: 392 QEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVI 219
Q+A+ KVG R+I++L TAYIQ P DQ+ DAPPDI PAF HAL++V ET SK+YGVI
Sbjct: 374 QDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVI 433
Query: 218 ECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVK 39
EC+P+V KGLE+TA+HMVIPYMPMLVPP+ WTGY++GA+ FLPSY+MRTHGA+QQR+ VK
Sbjct: 434 ECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK 493
Query: 38 KAPREQLEPVFK 3
+ P++QLEPVF+
Sbjct: 494 RTPKKQLEPVFE 505
>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
gi|462411068|gb|EMJ16117.1| hypothetical protein
PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 409 bits (1052), Expect = e-111
Identities = 201/309 (65%), Positives = 236/309 (76%), Gaps = 2/309 (0%)
Frame = -2
Query: 923 KVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSR 744
K+ETEAWE AAKEY+EL++DMCEQKLAPNLPY+KSLFLGWFEPLR+AI EQ+LC+
Sbjct: 195 KIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQDLCRKGKN 254
Query: 743 STTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFL 564
T +APY DQLPADMM+VITMHKLM LLMTGG RV+ AA +GEAIE EVRIHKFL
Sbjct: 255 KTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQEVRIHKFL 314
Query: 563 ETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEA 384
E +++K + E D A KE+E+L VR IVS+ D KSW EA
Sbjct: 315 EMTRKKKVDKDQENGESDAAKKEREKLNKKVTNLMKKQKLKAVRGIVSKHDASKSWSLEA 374
Query: 383 QLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECD 210
+ KVG RLI++L TA+IQPP DQ+ D PPDIRPAFVH ++V + S+RYGVIECD
Sbjct: 375 RAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRTVAKDAKNASRRYGVIECD 434
Query: 209 PIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAP 30
P+V KGLEKTA+HMVIPYMPMLVPPLNWTGY++G Y FLPSY+MR HGARQQREA+K+ P
Sbjct: 435 PLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFFLPSYVMRIHGARQQREAIKRTP 494
Query: 29 REQLEPVFK 3
REQLEPVFK
Sbjct: 495 REQLEPVFK 503