BLASTX nr result
ID: Mentha22_contig00051058
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha22_contig00051058
(370 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Orig... 228 9e-58
ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) ... 226 2e-57
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ... 226 2e-57
ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in... 226 2e-57
ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans... 226 3e-57
ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ... 225 6e-57
gb|AGF30344.1| RNA polymerase beta'', partial (chloroplast) [Lam... 224 1e-56
gb|AGF30327.1| RNA polymerase beta'', partial (chloroplast) [Lam... 224 1e-56
gb|AGF30322.1| RNA polymerase beta'', partial (chloroplast) [Lam... 224 1e-56
gb|AGF30307.1| RNA polymerase beta'', partial (chloroplast) [Lam... 224 1e-56
gb|ADO13866.1| RNA polymerase beta subunit [Paracryphia alticola] 224 1e-56
sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymeras... 224 1e-56
gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bart... 224 1e-56
gb|AHE41665.1| RNA polymerase beta' subunit, partial (chloroplas... 224 1e-56
sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymeras... 224 1e-56
sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymeras... 224 1e-56
ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacu... 224 1e-56
ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) ... 224 1e-56
ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast)... 224 1e-56
ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana ... 224 1e-56
>gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Origanum vulgare
subsp. vulgare]
Length = 1397
Score = 228 bits (580), Expect = 9e-58
Identities = 111/123 (90%), Positives = 111/123 (90%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386
>ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) [Lindenbergia
philippensis] gi|557136853|emb|CDI43908.1| RNA
polymerase beta'' subunit (chloroplast) [Lindenbergia
philippensis]
Length = 1368
Score = 226 bits (577), Expect = 2e-57
Identities = 110/123 (89%), Positives = 111/123 (90%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 260 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 319
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 320 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 379
Query: 361 LCS 369
LCS
Sbjct: 380 LCS 382
>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438687594|emb|CCP47120.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688278|emb|CCP47209.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688402|emb|CCP47298.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
Length = 1395
Score = 226 bits (577), Expect = 2e-57
Identities = 110/123 (89%), Positives = 111/123 (90%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386
>ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta''
subunit (chloroplast) [Sesamum indicum]
gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
indicum]
Length = 1390
Score = 226 bits (577), Expect = 2e-57
Identities = 110/123 (89%), Positives = 111/123 (90%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386
>ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans]
gi|558697185|gb|AHA84940.1| RNA polymerase beta''
subunit [Ajuga reptans]
Length = 1377
Score = 226 bits (576), Expect = 3e-57
Identities = 109/123 (88%), Positives = 111/123 (90%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQD+GIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 260 IATRNQDVGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 319
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 320 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 379
Query: 361 LCS 369
LCS
Sbjct: 380 LCS 382
>ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|401879732|gb|AFQ30919.1| RNA polymerase beta
subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|573461941|emb|CCQ71610.1| RNA polymerase beta''
subunit (chloroplast) [Salvia miltiorrhiza]
Length = 1395
Score = 225 bits (573), Expect = 6e-57
Identities = 109/123 (88%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPI IRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLVNRFITFRAQPITIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386
>gb|AGF30344.1| RNA polymerase beta'', partial (chloroplast) [Lamium macrodon]
Length = 225
Score = 224 bits (571), Expect = 1e-56
Identities = 109/123 (88%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 80 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 139
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPA
Sbjct: 140 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAL 199
Query: 361 LCS 369
LCS
Sbjct: 200 LCS 202
>gb|AGF30327.1| RNA polymerase beta'', partial (chloroplast) [Lamium garganicum
subsp. corsicum] gi|451042164|gb|AGF30328.1| RNA
polymerase beta'', partial (chloroplast) [Lamium
garganicum subsp. corsicum] gi|451042166|gb|AGF30329.1|
RNA polymerase beta'', partial (chloroplast) [Lamium
garganicum subsp. garganicum]
gi|451042168|gb|AGF30330.1| RNA polymerase beta'',
partial (chloroplast) [Lamium garganicum subsp.
laevigatum] gi|451042170|gb|AGF30331.1| RNA polymerase
beta'', partial (chloroplast) [Lamium garganicum subsp.
laevigatum] gi|451042172|gb|AGF30332.1| RNA polymerase
beta'', partial (chloroplast) [Lamium garganicum subsp.
striatum] gi|451042174|gb|AGF30333.1| RNA polymerase
beta'', partial (chloroplast) [Lamium garganicum subsp.
striatum] gi|451042192|gb|AGF30342.1| RNA polymerase
beta'', partial (chloroplast) [Lamium lycium]
gi|451042194|gb|AGF30343.1| RNA polymerase beta'',
partial (chloroplast) [Lamium lycium]
gi|550600634|gb|AGX85173.1| RpoC2, partial (chloroplast)
[Lamium garganicum subsp. laevigatum]
Length = 225
Score = 224 bits (571), Expect = 1e-56
Identities = 109/123 (88%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 80 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 139
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPA
Sbjct: 140 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAL 199
Query: 361 LCS 369
LCS
Sbjct: 200 LCS 202
>gb|AGF30322.1| RNA polymerase beta'', partial (chloroplast) [Lamium galeobdolon
subsp. galeobdolon]
Length = 225
Score = 224 bits (571), Expect = 1e-56
Identities = 109/123 (88%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 80 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 139
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPA
Sbjct: 140 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAL 199
Query: 361 LCS 369
LCS
Sbjct: 200 LCS 202
>gb|AGF30307.1| RNA polymerase beta'', partial (chloroplast) [Lamium confertum]
gi|451042124|gb|AGF30308.1| RNA polymerase beta'',
partial (chloroplast) [Lamium confertum]
gi|451042126|gb|AGF30309.1| RNA polymerase beta'',
partial (chloroplast) [Lamium confertum]
gi|451042128|gb|AGF30310.1| RNA polymerase beta'',
partial (chloroplast) [Lamium confertum]
gi|451042130|gb|AGF30311.1| RNA polymerase beta'',
partial (chloroplast) [Lamium coutinhoi]
gi|451042132|gb|AGF30312.1| RNA polymerase beta'',
partial (chloroplast) [Lamium coutinhoi]
gi|451042138|gb|AGF30315.1| RNA polymerase beta'',
partial (chloroplast) [Lamium galactophyllum]
gi|451042140|gb|AGF30316.1| RNA polymerase beta'',
partial (chloroplast) [Lamium galeobdolon subsp.
argentatum] gi|451042142|gb|AGF30317.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
argentatum] gi|451042144|gb|AGF30318.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
argentatum] gi|451042146|gb|AGF30319.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
flavidum] gi|451042148|gb|AGF30320.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
flavidum] gi|451042150|gb|AGF30321.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
flavidum] gi|451042154|gb|AGF30323.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
galeobdolon] gi|451042156|gb|AGF30324.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
montanum] gi|451042158|gb|AGF30325.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
montanum] gi|451042160|gb|AGF30326.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
montanum] gi|451042176|gb|AGF30334.1| RNA polymerase
beta'', partial (chloroplast) [Lamium garganicum var.
armenum] gi|451042182|gb|AGF30337.1| RNA polymerase
beta'', partial (chloroplast) [Lamium x holsaticum]
gi|451042184|gb|AGF30338.1| RNA polymerase beta'',
partial (chloroplast) [Lamium x holsaticum]
gi|451042198|gb|AGF30345.1| RNA polymerase beta'',
partial (chloroplast) [Lamium macrodon]
gi|451042200|gb|AGF30346.1| RNA polymerase beta'',
partial (chloroplast) [Lamium maculatum]
gi|451042202|gb|AGF30347.1| RNA polymerase beta'',
partial (chloroplast) [Lamium maculatum]
gi|451042204|gb|AGF30348.1| RNA polymerase beta'',
partial (chloroplast) [Lamium maculatum]
gi|451042206|gb|AGF30349.1| RNA polymerase beta'',
partial (chloroplast) [Lamium moschatum]
gi|451042208|gb|AGF30350.1| RNA polymerase beta'',
partial (chloroplast) [Lamium moschatum var. rhodium]
gi|451042210|gb|AGF30351.1| RNA polymerase beta'',
partial (chloroplast) [Lamium orvala]
gi|451042212|gb|AGF30352.1| RNA polymerase beta'',
partial (chloroplast) [Lamium orvala]
gi|451042214|gb|AGF30353.1| RNA polymerase beta'',
partial (chloroplast) [Lamium purpureum]
gi|451042216|gb|AGF30354.1| RNA polymerase beta'',
partial (chloroplast) [Lamium purpureum]
gi|451042218|gb|AGF30355.1| RNA polymerase beta'',
partial (chloroplast) [Lamium purpureum]
gi|550600624|gb|AGX85168.1| RpoC2, partial (chloroplast)
[Lamium confertum] gi|550600626|gb|AGX85169.1| RpoC2,
partial (chloroplast) [Lamium confertum]
gi|550600630|gb|AGX85171.1| RpoC2, partial (chloroplast)
[Lamium galeobdolon subsp. flavidum]
gi|550600632|gb|AGX85172.1| RpoC2, partial (chloroplast)
[Lamium galeobdolon subsp. galeobdolon]
gi|550600640|gb|AGX85176.1| RpoC2, partial (chloroplast)
[Lamium maculatum] gi|550600642|gb|AGX85177.1| RpoC2,
partial (chloroplast) [Lamium maculatum]
gi|550600644|gb|AGX85178.1| RpoC2, partial (chloroplast)
[Lamium maculatum] gi|550600646|gb|AGX85179.1| RpoC2,
partial (chloroplast) [Lamium moschatum]
gi|550600648|gb|AGX85180.1| RpoC2, partial (chloroplast)
[Lamium orvala] gi|550600650|gb|AGX85181.1| RpoC2,
partial (chloroplast) [Lamium orvala]
gi|550600652|gb|AGX85182.1| RpoC2, partial (chloroplast)
[Lamium orvala]
Length = 225
Score = 224 bits (571), Expect = 1e-56
Identities = 109/123 (88%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 80 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 139
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPA
Sbjct: 140 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAL 199
Query: 361 LCS 369
LCS
Sbjct: 200 LCS 202
>gb|ADO13866.1| RNA polymerase beta subunit [Paracryphia alticola]
Length = 606
Score = 224 bits (571), Expect = 1e-56
Identities = 107/123 (86%), Positives = 111/123 (90%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
+ATRNQD+GIGLVNRFITFRAQPI+IRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 250 VATRNQDLGIGLVNRFITFRAQPISIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 309
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 310 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 369
Query: 361 LCS 369
LCS
Sbjct: 370 LCS 372
>sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|239977080|sp|P38550.2|RPOC2_TOBAC RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|2924258|emb|CAA77410.1| RNA polymerase beta''
subunit [Nicotiana tabacum] gi|77799548|dbj|BAE46637.1|
RNA polymerase beta'' subunit [Nicotiana sylvestris]
Length = 1392
Score = 224 bits (570), Expect = 1e-56
Identities = 108/123 (87%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPI+IRTPFTCRS SWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386
>gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bartsia inaequalis]
Length = 1384
Score = 224 bits (570), Expect = 1e-56
Identities = 107/123 (86%), Positives = 111/123 (90%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGL+NRF+TFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLINRFLTFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKI+FNEDL+HPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIQFNEDLVHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386
>gb|AHE41665.1| RNA polymerase beta' subunit, partial (chloroplast) [Philadelphus
coronarius]
Length = 1368
Score = 224 bits (570), Expect = 1e-56
Identities = 108/123 (87%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPI+IRTPFTCRS SWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 250 IATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVG 309
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 310 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 369
Query: 361 LCS 369
LCS
Sbjct: 370 LCS 372
>sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|80750911|dbj|BAE47987.1| RNA polymerase beta''
subunit [Nicotiana tomentosiformis]
Length = 1392
Score = 224 bits (570), Expect = 1e-56
Identities = 108/123 (87%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPI+IRTPFTCRS SWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386
>sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|20068321|emb|CAC88034.1| RNA polymerase beta II
subunit [Atropa belladonna]
Length = 1389
Score = 224 bits (570), Expect = 1e-56
Identities = 108/123 (87%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPI+IRTPFTCRS SWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386
>ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacum]
gi|126165910|ref|YP_358662.2| RNA polymerase beta''
subunit [Nicotiana sylvestris]
Length = 1388
Score = 224 bits (570), Expect = 1e-56
Identities = 108/123 (87%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPI+IRTPFTCRS SWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 260 IATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVG 319
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 320 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 379
Query: 361 LCS 369
LCS
Sbjct: 380 LCS 382
>ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) [Capsicum annuum]
gi|401065922|gb|AFP90766.1| RNA polymerase beta''
subunit (chloroplast) [Capsicum annuum]
Length = 1392
Score = 224 bits (570), Expect = 1e-56
Identities = 108/123 (87%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPI+IRTPFTCRS SWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386
>ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast) [Olea europaea]
gi|363413081|gb|ADA69916.2| RNA polymerase beta II
subunit (chloroplast) [Olea europaea]
Length = 1390
Score = 224 bits (570), Expect = 1e-56
Identities = 108/123 (87%), Positives = 111/123 (90%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IA+RNQDIGIGLVNRFITFRAQPI+IRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 260 IASRNQDIGIGLVNRFITFRAQPISIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 319
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 320 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 379
Query: 361 LCS 369
LCS
Sbjct: 380 LCS 382
>ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana undulata]
gi|347453891|gb|AEO95549.1| RNA polymerase beta''
subunit (chloroplast) [Nicotiana undulata]
gi|347454002|gb|AEO95659.1| RNA polymerase beta''
subunit [synthetic construct]
Length = 1392
Score = 224 bits (570), Expect = 1e-56
Identities = 108/123 (87%), Positives = 110/123 (89%)
Frame = +1
Query: 1 IATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGDLVELGEAVG 180
IATRNQDIGIGLVNRFITFRAQPI+IRTPFTCRS SWICRLCYGRSPTHGDLVELGEAVG
Sbjct: 264 IATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVG 323
Query: 181 IIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPTRTRHGHPAF 360
IIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPTRTRHGHPAF
Sbjct: 324 IIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAF 383
Query: 361 LCS 369
LCS
Sbjct: 384 LCS 386