BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00045110
         (912 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU32173.1| hypothetical protein MIMGU_mgv1a002389mg [Mimulus...   286   6e-75
ref|XP_004231193.1| PREDICTED: pentatricopeptide repeat-containi...   270   4e-70
ref|XP_006339632.1| PREDICTED: pentatricopeptide repeat-containi...   264   3e-68
ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containi...   251   2e-64
gb|AGZ20103.1| pentatricopeptide repeat-containing protein [Came...   232   1e-58
ref|XP_006491189.1| PREDICTED: pentatricopeptide repeat-containi...   230   7e-58
ref|XP_007051704.1| Pentatricopeptide repeat superfamily protein...   228   2e-57
gb|EXB51620.1| hypothetical protein L484_012912 [Morus notabilis]     216   1e-53
ref|XP_002320827.2| pentatricopeptide repeat-containing family p...   211   2e-52
ref|XP_006397795.1| hypothetical protein EUTSA_v10001319mg [Eutr...   196   8e-48
ref|XP_004308336.1| PREDICTED: pentatricopeptide repeat-containi...   196   8e-48
ref|XP_004301483.1| PREDICTED: pentatricopeptide repeat-containi...   196   1e-47
ref|XP_006292416.1| hypothetical protein CARUB_v10018630mg [Caps...   189   2e-45
ref|NP_191711.1| pentatricopeptide repeat-containing protein [Ar...   189   2e-45
ref|XP_002878387.1| pentatricopeptide repeat-containing protein ...   187   4e-45
ref|NP_198189.1| pentatricopeptide repeat-containing protein [Ar...   184   3e-44
ref|NP_680234.1| pentatricopeptide repeat-containing protein [Ar...   184   3e-44
gb|AAM61467.1| unknown [Arabidopsis thaliana]                         183   7e-44
ref|XP_007160491.1| hypothetical protein PHAVU_002G326200g [Phas...   181   4e-43
ref|XP_004300812.1| PREDICTED: pentatricopeptide repeat-containi...   180   6e-43

>gb|EYU32173.1| hypothetical protein MIMGU_mgv1a002389mg [Mimulus guttatus]
          Length = 680

 Score =  286 bits (733), Expect = 6e-75
 Identities = 157/304 (51%), Positives = 199/304 (65%)
 Frame = +1

Query: 1   QTSDPISWPANPKLGDLLSAVSAQSVLQIARRLPDSQNALQFFDCLKTNPDLSNSASFAF 180
           QT+DP SWP N  L  LLS++S  +VL++ R+LP+ QNAL FF+ LKT  +LS+S   AF
Sbjct: 52  QTTDPSSWPTNSNLQTLLSSLSPPAVLRVTRQLPNYQNALHFFNHLKTAAELSDSIPLAF 111

Query: 181 QAVFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSM 360
           QAV E AMRENP   G L ELF ++K+++  LSVN+ TLLIK F R K +DEM+ VFDSM
Sbjct: 112 QAVLEVAMRENP---GTLCELFVLSKEQNIPLSVNAATLLIKYFGRGKKLDEMMSVFDSM 168

Query: 361 DAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCG 540
           D ++KN+ V+N+ + G    GR +DALKL+DEML+PD+ YPPN NT  IVFSSIL +N  
Sbjct: 169 DEEMKNTDVLNLVIVGFLKWGRFNDALKLLDEMLEPDSCYPPNTNTAGIVFSSILKKNWS 228

Query: 541 GRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEV 720
           GRR+TDEEI NL   F + G                                   SDVE+
Sbjct: 229 GRRVTDEEICNLVTSFSEHG-----------------------------------SDVEI 253

Query: 721 VSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEK 900
            SCN +L+ L    D+ RMNLLM+EMKE GI+PN+VTYGI +  L  LRRLDEA+EVLE+
Sbjct: 254 ASCNALLTGLANNHDFARMNLLMKEMKESGIKPNIVTYGITINQLSKLRRLDEALEVLEQ 313

Query: 901 MRDG 912
           MR G
Sbjct: 314 MRGG 317



 Score = 77.4 bits (189), Expect = 7e-12
 Identities = 57/224 (25%), Positives = 106/224 (47%), Gaps = 2/224 (0%)
 Frame = +1

Query: 238 ELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSM-DAQVK-NSHVMNVYVAGM 411
           ELF+        ++V +   L+    +   V   +E+F+++ +  VK N+    V +   
Sbjct: 352 ELFEQMSKEGVEINVVTLNTLVDGMCKHGRVSSAMELFNNIREKGVKGNAVTYTVLITAF 411

Query: 412 FGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFV 591
                +D A+KL DEM +         ++  +V+ S++   C   R+ D     +  R  
Sbjct: 412 CNVNNIDRAMKLFDEMQENGC------SSDAVVYYSLISGLCQAGRMDDATF--VVSRMK 463

Query: 592 KPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYG 771
           + G  LD   +  +I  FC+  + DKA  +L +  ++    + V+ NT+LS      D+ 
Sbjct: 464 EAGFCLDVVSYNILIGGFCRKNKLDKAAEMLKDMETAGVKPDRVTYNTLLSFFCSNGDFK 523

Query: 772 RMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
             + +M++M   G+ PNVVTYG M++  C+   +D AM++   M
Sbjct: 524 HAHKVMKKMIGDGLTPNVVTYGAMIQAYCTSNNIDAAMKIYTDM 567


>ref|XP_004231193.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Solanum lycopersicum]
          Length = 761

 Score =  270 bits (691), Expect = 4e-70
 Identities = 136/307 (44%), Positives = 205/307 (66%), Gaps = 6/307 (1%)
 Frame = +1

Query: 1   QTSDPISWPANPKLGDLL-SAVSAQSVLQIARRLPDSQNALQFFDCLKTNPDLSNS---- 165
           +T+D   W +N +L + L +  S  S+L+I R+L  ++ ALQFF+  KT+   S+S    
Sbjct: 56  KTTDHNDWISNSELVEYLHTPPSPTSLLKITRQLGSTEKALQFFEFFKTHSSSSSSNPSS 115

Query: 166 ASFAFQAVFEHAMRENPK-APGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMV 342
            SF FQA+ E AMRE     P KL++LF  AKDR   LS+N+GTLL++CF RAKM++E +
Sbjct: 116 LSFTFQAILEQAMREEKSDVPRKLFQLFSFAKDRKIPLSINAGTLLMRCFGRAKMLEESI 175

Query: 343 EVFDSMDAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSI 522
            V+  +D+  +N++V+N+ +  +F    +DD  K++DEML+ D+ +PPN +T  IV S++
Sbjct: 176 SVYHELDSDSRNTNVVNLLLDCLFRGRNIDDGFKVLDEMLKRDSDFPPNNSTVDIVLSAM 235

Query: 523 LGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSS 702
              N  GRR++ EEIY L +RF + G +LD+ W+ ++I +FC++G+CDKAW +LH+ M  
Sbjct: 236 WKSNWVGRRMSVEEIYGLLVRFFEHGVFLDDVWFTKLITKFCRSGKCDKAWDLLHDMMKL 295

Query: 703 RSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEA 882
              V+  S N +L  LGR  D+ +MNLLM EMKEK + P+VVT+GI +  LC   R+DEA
Sbjct: 296 GGQVKASSFNALLCGLGREHDFQKMNLLMNEMKEKEVNPDVVTFGIFINYLCKCYRVDEA 355

Query: 883 MEVLEKM 903
           ++V EKM
Sbjct: 356 LQVFEKM 362



 Score = 67.4 bits (163), Expect = 7e-09
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 2/206 (0%)
 Frame = +1

Query: 298  LIKCFSRAKMVDEMVEVFDSM--DAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPD 471
            LI  + +A  ++  +E+FD M  D  V N   MN  + GM   GRV  A++   EM   +
Sbjct: 418  LIDGYCKAGEIERSLELFDQMKKDRVVPNVITMNTLLHGMCKFGRVSSAMRFFAEM--QE 475

Query: 472  AHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCK 651
                 N  T+TI+ ++    N   R ++      LF    + G   D   +  +I   C+
Sbjct: 476  RGLKGNAITYTILITTFCSVNNIDRAMS------LFNEMSEDGCLPDARAYYSLIMGLCQ 529

Query: 652  NGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVT 831
                D+A  +  +   +R D++++  N+++  L R+        ++++M+E GI+P+  T
Sbjct: 530  ARRTDEASCIASKAKEARVDLDIICYNSLIGALCRKNKIEEAQKMLKDMEEAGIKPDCYT 589

Query: 832  YGIMVKNLCSLRRLDEAMEVLEKMRD 909
            Y  ++       +   A  ++++M D
Sbjct: 590  YNTLISYFSEKGQFTAASRIMKRMID 615


>ref|XP_006339632.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Solanum tuberosum]
          Length = 761

 Score =  264 bits (675), Expect = 3e-68
 Identities = 132/307 (42%), Positives = 204/307 (66%), Gaps = 6/307 (1%)
 Frame = +1

Query: 1   QTSDPISWPANPKLGDLL-SAVSAQSVLQIARRLPDSQNALQFFDCLKTNPDLSNS---- 165
           +T+D   W +N +L + L +  S  S+L+I R+L  ++ AL FF+  KT+   S+S    
Sbjct: 56  KTNDHNDWISNSQLVEFLHTPPSPTSLLKITRQLGSTEKALHFFEFFKTHSSSSSSNPSS 115

Query: 166 ASFAFQAVFEHAMRENPK-APGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMV 342
            SF FQA+ E AM E     PGKL++LF  AKDR   LS+N+ TLL++CF RAKM++E +
Sbjct: 116 LSFTFQAILEQAMHEEKSDVPGKLFQLFSFAKDRKIPLSINAATLLMRCFGRAKMLEESI 175

Query: 343 EVFDSMDAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSI 522
            V++ +D+  +N++V+N+ +  +F    +DD  K++DEML+ ++ +PPN +T  IV  ++
Sbjct: 176 SVYNELDSDSRNTNVVNLLLDCLFRGVNIDDGFKVLDEMLKRESDFPPNNSTVDIVLDAM 235

Query: 523 LGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSS 702
             RN  GRR++ EEI  L +RF + G +LD+ W+ ++I +FC++G+CDKAW +LH+ M  
Sbjct: 236 WKRNWVGRRMSVEEICGLLVRFFEHGVFLDDVWFTKLITKFCRSGKCDKAWDLLHDMMKL 295

Query: 703 RSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEA 882
              V+  S N +LS LGR  D+ +MNLLM  MKEK + P+VVT+GI + +LC   R+DEA
Sbjct: 296 GGQVKASSFNALLSGLGREHDFQKMNLLMNVMKEKEVNPDVVTFGIFINHLCKCYRVDEA 355

Query: 883 MEVLEKM 903
           ++V EKM
Sbjct: 356 LQVFEKM 362



 Score = 71.2 bits (173), Expect = 5e-10
 Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 31/233 (13%)
 Frame = +1

Query: 298  LIKCFSRAKMVDEMVEVFDSM--DAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPD 471
            LI  F +A  ++  +E+FD M  D  V N   MN  + GM   GRV  A+    EM +  
Sbjct: 418  LIDGFCKAGEIERSLELFDQMKMDRVVPNVITMNTLLHGMCKFGRVSSAMSFFAEMQEKG 477

Query: 472  AHYPPNKNTFTIVFS------------SILGRNCGGRRLTDEEIYNLFL----------- 582
                 N  T+T++ +            S+       R L D ++Y   +           
Sbjct: 478  LK--GNVITYTVLITTFCSVNNIDRAMSLFNEMSENRCLPDAKVYYSLIMGLCQARRTDD 535

Query: 583  ------RFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLS 744
                  +  + G  LD   +  +I   C+  + D+A  +L +   +    +  + NT++S
Sbjct: 536  ASCIASKAKEAGIGLDIICYNALIGALCRKNKIDEAHKMLKDMEEAGIKPDCYTYNTLIS 595

Query: 745  ELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
                +  +   + +M+ M + G  PNVVTYG ++   C    LDEAM++ + M
Sbjct: 596  YFSEKGQFTTASRIMKRMIDDGFLPNVVTYGALIHAFCLAGNLDEAMKIFQNM 648



 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 10/237 (4%)
 Frame = +1

Query: 229 KLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQ------VKNSHVM 390
           K+  L  + K+++    V +  + I    +   VDE ++VF+ M         VK   V+
Sbjct: 319 KMNLLMNVMKEKEVNPDVVTFGIFINHLCKCYRVDEALQVFEKMGGSETDGVLVKPDVVL 378

Query: 391 -NVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEI 567
            N  + G+   G+ ++ LKL+++M   +   P   NT T         NC          
Sbjct: 379 YNTLIDGLCKVGKQEEGLKLMEKMRLKNGSVP---NTITY--------NC---------- 417

Query: 568 YNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSE 747
                                +I  FCK GE +++  +  +    R    V++ NT+L  
Sbjct: 418 ---------------------LIDGFCKAGEIERSLELFDQMKMDRVVPNVITMNTLLHG 456

Query: 748 LGRRRDYGRMNLLMQ---EMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMRD 909
           + +   +GR++  M    EM+EKG++ NV+TY +++   CS+  +D AM +  +M +
Sbjct: 457 MCK---FGRVSSAMSFFAEMQEKGLKGNVITYTVLITTFCSVNNIDRAMSLFNEMSE 510


>ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
           gi|297745328|emb|CBI40408.3| unnamed protein product
           [Vitis vinifera]
          Length = 765

 Score =  251 bits (642), Expect = 2e-64
 Identities = 131/282 (46%), Positives = 183/282 (64%), Gaps = 2/282 (0%)
 Frame = +1

Query: 73  SVLQIARRLPDSQNALQFFDCLKTNPDLSNSA--SFAFQAVFEHAMRENPKAPGKLYELF 246
           ++LQI R L  +  AL+FF+ ++ N    +S   SF  +AVFEHA RE P +  KL +LF
Sbjct: 89  NLLQITRLLGSTAKALKFFNWVQANSPCQDSPLLSFTLEAVFEHASRE-PNSHNKLLDLF 147

Query: 247 KMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMNVYVAGMFGAGR 426
           K +K     LSVN+ TLLI+CF RA+MVDE   V++ +    + +H+ N+ +  +F  GR
Sbjct: 148 KTSKSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNELCPSRRLTHIRNILIDVLFRKGR 207

Query: 427 VDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNY 606
           VDDAL L+DEMLQP A +PPN NT  IVFS++  R+  GR + +EEI  L  +F +   +
Sbjct: 208 VDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVF 267

Query: 607 LDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLL 786
            +  W  ++I R C++G  D+AW VLH  M     +E  SCN +L+ LGR R++ RMN L
Sbjct: 268 PNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTL 327

Query: 787 MQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMRDG 912
           + EMKE  IQPNVVT+GI++ +LC  RR+DEA+EV EKM  G
Sbjct: 328 LAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGG 369



 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 35/237 (14%)
 Frame = +1

Query: 298  LIKCFSRAKMVDEMVEVFDSM--DAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPD 471
            LI  + +A M++   E+FD M  D    N   +N  V GM   GR++ A++  +EM    
Sbjct: 422  LIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEM--QG 479

Query: 472  AHYPPNKNTFTIV----------------FSSILGRNCGGRRLTDEEIYNLFLRFVKPGN 603
                 N  T+T +                F  +L   C      D  +Y   +  +    
Sbjct: 480  KGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCS----PDAIVYYTLISGLSQAG 535

Query: 604  YLDEFWW-----KE------------MIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCN 732
             LD   +     KE            +I  FC+  + D+A+ +L E  ++    + V+ N
Sbjct: 536  KLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYN 595

Query: 733  TVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
            T++S   +  D+   + LM++M ++G+ P VVTYG ++   C    LDEAM++   M
Sbjct: 596  TLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDM 652



 Score = 67.4 bits (163), Expect = 7e-09
 Identities = 58/269 (21%), Positives = 112/269 (41%), Gaps = 42/269 (15%)
 Frame = +1

Query: 229  KLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVM------ 390
            ++  L    K+ D   +V +  +LI    + + VDE +EVF+ M+    N  ++      
Sbjct: 323  RMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVIT 382

Query: 391  -NVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEI 567
             N  + G+   GR ++ L LV+ M +      PN    T+ ++ ++   C    +  E  
Sbjct: 383  YNTLIDGLCKVGRQEEGLGLVERM-RSQPRCMPN----TVTYNCLIDGYCKASMI--EAA 435

Query: 568  YNLFLRFVKPG---------------------NYLDEFW--------------WKEMIFR 642
              LF +  K G                     N   EF+              +  +I  
Sbjct: 436  RELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRA 495

Query: 643  FCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPN 822
            FC     +KA  +  E + +    + +   T++S L +     R + ++ +MKE G  P+
Sbjct: 496  FCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPD 555

Query: 823  VVTYGIMVKNLCSLRRLDEAMEVLEKMRD 909
            +V++ +++   C   +LDEA E+L++M +
Sbjct: 556  IVSFNVLINGFCRKNKLDEAYEMLKEMEN 584



 Score = 60.8 bits (146), Expect = 7e-07
 Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 33/239 (13%)
 Frame = +1

Query: 292  TLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMNVY--VAGMFGAGRVDDALKLVDEMLQ 465
            T LI+ F     +++ +E+FD M     +   +  Y  ++G+  AG++D A  ++ +M  
Sbjct: 490  TALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKM-- 547

Query: 466  PDAHYPPNKNTFTIVFSSILGRNCGGRRLT------------DEEIYN------------ 573
             +A + P+  +F ++ +    +N                   D   YN            
Sbjct: 548  KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDF 607

Query: 574  -----LFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDV--EVVSCN 732
                 L  + VK G       +  +I  +C NG  D+A  +  + MSS S V    V  N
Sbjct: 608  STAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRD-MSSTSKVPPNTVIYN 666

Query: 733  TVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMRD 909
             +++ L R+        LM +MK KG++PN  T+  M K L     L +A E++++M +
Sbjct: 667  ILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTE 725


>gb|AGZ20103.1| pentatricopeptide repeat-containing protein [Camellia sinensis]
          Length = 771

 Score =  232 bits (592), Expect = 1e-58
 Identities = 119/280 (42%), Positives = 184/280 (65%), Gaps = 3/280 (1%)
 Frame = +1

Query: 73  SVLQIARRLPDSQNALQFFDCLKT---NPDLSNSASFAFQAVFEHAMRENPKAPGKLYEL 243
           S+ +I R L  +  AL FF+  +T   +P   +S S +FQA+FE A ++ P  P KL EL
Sbjct: 92  SLYKITRSLGTATKALNFFEFFRTQSPSPPDPSSLSSSFQAIFELASQQ-PNPPTKLSEL 150

Query: 244 FKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMNVYVAGMFGAG 423
             ++KD +  L+ +S TLLI+CF+RA +V++ V +F  +D  +KN+H+ N+ V  +  AG
Sbjct: 151 LTISKDHNIPLNFSSATLLIRCFARAGLVEKSVLIFKELDPDLKNTHISNLIVDILLRAG 210

Query: 424 RVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFVKPGN 603
           RVDDA ++ DEML+PD+  PPN+ T  I  + +L R+  GR ++DEEI  L  +F + G 
Sbjct: 211 RVDDAFQVFDEMLKPDSESPPNEITVNIAMAGLLWRDRTGRSVSDEEIIGLVSKFGECGV 270

Query: 604 YLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYGRMNL 783
           +       ++I + C+ G+ D+AW V+H  M    DV+  SCN +L+ LGR++++ +MN 
Sbjct: 271 FPSVVRLTQLITKLCRTGKSDRAWDVIHNVMKLGGDVQAPSCNALLAGLGRQQNFQKMNK 330

Query: 784 LMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
           L+ EMKE GIQP+++T+GI+V +LC  RR+DEA+EV EKM
Sbjct: 331 LLAEMKENGIQPDIITFGILVNHLCKFRRVDEALEVFEKM 370



 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 2/231 (0%)
 Frame = +1

Query: 226  GKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQ-VKNSHVMNVYV 402
            G+ +ELF          +V +   L+    +   ++  +E F+ M  + +K + V    +
Sbjct: 439  GRAHELFDQMNKEGVPPNVITLNTLVDGMCKHGRINSAMEFFNEMQGKGLKGNAVTYTAL 498

Query: 403  AGMF-GAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLF 579
               F  A  +D A++L +EM + +       +   IV+ +++       +L D       
Sbjct: 499  INAFCNANNIDKAMQLFNEMSKAEC------SPDAIVYYTLISGLTQAGKLDDASFVATV 552

Query: 580  LRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRR 759
            ++  K G  LD   +  +I  FC   + DKA+ +L E   +    + ++ N+++S   + 
Sbjct: 553  MK--KAGFCLDIMSYNILIGGFCSKNKLDKAYEMLKEMEQAGVKPDGITYNSLISYFSKN 610

Query: 760  RDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMRDG 912
             D+   + +M+EM   G+ P VVT G ++   C + +LDEAM++   M  G
Sbjct: 611  GDFMTAHRVMREMISDGLVPTVVTCGALIHAYCLVGKLDEAMKIFRDMNSG 661


>ref|XP_006491189.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g28460-like [Citrus sinensis]
          Length = 757

 Score =  230 bits (586), Expect = 7e-58
 Identities = 127/310 (40%), Positives = 191/310 (61%), Gaps = 6/310 (1%)
 Frame = +1

Query: 1   QTSDPISWPANPKLGDLL---SAVSAQSVLQIARRLPDSQNALQFFDCLKTN-PDLSN-- 162
           QT D   W ++P++ +LL   +++S Q   QI RR P S  AL FF+ L++N P  +N  
Sbjct: 51  QTPDN-EWTSSPQIKNLLFSSTSLSPQLFFQITRRFPSSSRALSFFNFLQSNLPTEANTS 109

Query: 163 SASFAFQAVFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMV 342
           S S+A+QAVFE A+RE   +P  L++L+K  KD++  LS+NS TLLI+ F +  M D  +
Sbjct: 110 SLSYAYQAVFELAIRER-MSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSL 168

Query: 343 EVFDSMDAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSI 522
            V++ +D  ++N+HV NV +  +       DA  ++DEML  ++ +P N+ T  IVF ++
Sbjct: 169 LVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYAL 228

Query: 523 LGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSS 702
           + R      +TDEE+  L  +F + G + +  W  ++I RFC+ G+ D+AW VLH  M  
Sbjct: 229 MRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF 288

Query: 703 RSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEA 882
            + +E  SCN +L+ LGR  D+ RMN L  EMKE  I+P+VVT+G ++  LC L R DEA
Sbjct: 289 DAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEA 348

Query: 883 MEVLEKMRDG 912
           +EV EKM  G
Sbjct: 349 LEVFEKMIAG 358



 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 50/224 (22%), Positives = 101/224 (45%), Gaps = 2/224 (0%)
 Frame = +1

Query: 238  ELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQ--VKNSHVMNVYVAGM 411
            ELF + K    T +V +   L+    R   ++  VE F  +  +    N+    + +   
Sbjct: 429  ELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAF 488

Query: 412  FGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFV 591
                   +A+K  D+M +         +  ++V+ +++   C   R+ D  +  +  +  
Sbjct: 489  CNVNNFQEAIKWFDDMSRAGC------SADSVVYFTLISGLCQAGRMNDASL--VVSKLK 540

Query: 592  KPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYG 771
            + G   D   +  +I  FCK    DKA+ VL E          V+ NT++S L +  ++ 
Sbjct: 541  EAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFS 600

Query: 772  RMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
                ++++M ++G+ P VVTYG ++   C    +DEAM++ +++
Sbjct: 601  AARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKEL 644



 Score = 60.8 bits (146), Expect = 7e-07
 Identities = 67/261 (25%), Positives = 103/261 (39%), Gaps = 39/261 (14%)
 Frame = +1

Query: 238  ELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQ--VKNSHVMNVYVAGM 411
            E F+    +    +  + T+LI  F       E ++ FD M       +S V    ++G+
Sbjct: 464  EFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGL 523

Query: 412  FGAGRVDDALKLVD-------------------------------EMLQP--DAHYPPNK 492
              AGR++DA  +V                                E+LQ   D    PN 
Sbjct: 524  CQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS 583

Query: 493  NTFT--IVFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECD 666
             T+   I F S  G     RR+          + VK G       +  +I  FC NG  D
Sbjct: 584  VTYNTLISFLSKSGNFSAARRVLK--------KMVKEGLVPTVVTYGALIHAFCVNGHVD 635

Query: 667  KAWHVLHEWMSSRSDVE--VVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGI 840
            +A  +  E +SS S+V    V  N ++  L +         LM+EMK K ++PN  TY  
Sbjct: 636  EAMKIFKE-LSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNA 694

Query: 841  MVKNLCSLRRLDEAMEVLEKM 903
            M K L     LD+A +++++M
Sbjct: 695  MFKGLRQKNMLDKAFKLMDRM 715


>ref|XP_007051704.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
           cacao] gi|508703965|gb|EOX95861.1| Pentatricopeptide
           repeat superfamily protein, putative [Theobroma cacao]
          Length = 764

 Score =  228 bits (582), Expect = 2e-57
 Identities = 129/302 (42%), Positives = 188/302 (62%), Gaps = 5/302 (1%)
 Frame = +1

Query: 22  WPANPKLGDLLSA---VSAQSVLQIARRLPDSQNALQFFDCLKTNPDLSNSA--SFAFQA 186
           W ++  L  LL +   +S + +LQI RRLP S  AL FF  L+ N    ++   S+ FQA
Sbjct: 67  WSSSQPLQSLLFSSPPLSPRFLLQITRRLPSSSEALNFFKHLQQNSPSQDAQFLSYPFQA 126

Query: 187 VFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDA 366
           V E A RE P +  +L +L++ +K  +  L+VN+  LLI+ F R +MVDE + +F+ +D 
Sbjct: 127 VLEQAGRE-PDSATRLSQLYQDSKQWEIPLTVNAAVLLIRYFGRLEMVDESLLIFNELDP 185

Query: 367 QVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGR 546
            +KN+HV NV +      GRVD AL ++DEMLQP +  PPN  T  IVF  ++ R   GR
Sbjct: 186 TLKNTHVRNVLIDVSLRDGRVDYALNVLDEMLQPLSEVPPNDVTGDIVFYGLVKRERKGR 245

Query: 547 RLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVS 726
           +L++EEI  L L+F +   +    W  ++I R C++G+ ++AW+VL E +  R+ +E   
Sbjct: 246 KLSEEEIIKLVLKFGEHSVFPRTIWLTQLITRLCRSGKINQAWNVLQELLRLRAPLEAAP 305

Query: 727 CNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMR 906
            N VL+ LGR  D  RMN+L+ EMKE  IQPN VT+GI++  LC  RR+DEAMEVL +M 
Sbjct: 306 FNAVLTGLGRSGDVERMNMLLVEMKESDIQPNGVTFGILINQLCKSRRVDEAMEVLNRMG 365

Query: 907 DG 912
           +G
Sbjct: 366 EG 367



 Score = 73.6 bits (179), Expect = 1e-10
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 2/224 (0%)
 Frame = +1

Query: 238  ELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQ--VKNSHVMNVYVAGM 411
            EL+   K+   + +V +   L+    R       +E F+ M  +    N+      ++  
Sbjct: 436  ELYDRMKEEGVSPNVITLNTLVDGMCRHGRTSSALEFFNDMQGKGLKGNAVTYTTLISAF 495

Query: 412  FGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFV 591
                 +D A+ L D++L+         +   IV+ S++   C   R+ D    N+  +  
Sbjct: 496  CNVNNIDKAVDLFDQLLRSGC------SADAIVYYSLISGLCQAGRMDDAS--NVLSKLK 547

Query: 592  KPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYG 771
            + G   D   +  +I  FCK  + DKA+ +L E   +   V+ V+ NT+++   +  ++G
Sbjct: 548  EAGFCPDVACYNVLISGFCKKNKIDKAYEILKEMEEAGMKVDNVTYNTLIAYFSKIGEFG 607

Query: 772  RMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
              + +M++M  +G+ P V TYG ++   C    + EAM++ + M
Sbjct: 608  VAHRVMKKMIGEGLVPTVATYGALIHAYCLNGNIKEAMKLFKNM 651


>gb|EXB51620.1| hypothetical protein L484_012912 [Morus notabilis]
          Length = 769

 Score =  216 bits (549), Expect = 1e-53
 Identities = 119/286 (41%), Positives = 171/286 (59%), Gaps = 3/286 (1%)
 Frame = +1

Query: 64  SAQSVLQIARRLPDSQNALQFFDCLKTNPDLSNSASF---AFQAVFEHAMRENPKAPGKL 234
           S   +L IARRL  S  AL FFD ++ N  L   +S     FQAV E A RE P    +L
Sbjct: 79  SPTRLLHIARRLDSSSKALNFFDHVRENSHLPKDSSLLASTFQAVLELASRE-PSWEKRL 137

Query: 235 YELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMNVYVAGMF 414
           +EL+  +++R+  L++N+ TLL  CF RA M +E++ V   +D   KN+H +N  +  + 
Sbjct: 138 FELYTTSRERNVPLTINAATLLFVCFGRAGMREELMTVLKGLDDDCKNTHALNRVIDVLL 197

Query: 415 GAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFVK 594
             G VDDAL ++DEML+PD  +PPN+ T   VF  +L R+   RR  DEEI  L  RF +
Sbjct: 198 RLGCVDDALHVLDEMLEPDGKFPPNEVTGNAVFPLLLNRDRSFRRFEDEEIIGLVSRFGE 257

Query: 595 PGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYGR 774
            G + D    +++I  FC++ +   AW VL   + S   V   +CN +L+ L R +D+ +
Sbjct: 258 HGVFPDGLLLRQLITNFCRDKKDGCAWDVLCNVIKSNGSVATDACNALLAGLARSKDFKK 317

Query: 775 MNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMRDG 912
           MN LM++MKEK I+PNVVTYGI++  LC  RR+D A+EV   +R G
Sbjct: 318 MNELMEKMKEKDIKPNVVTYGILINCLCKSRRIDGALEVFAVLRQG 363



 Score = 71.6 bits (174), Expect = 4e-10
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 31/236 (13%)
 Frame = +1

Query: 298  LIKCFSRAKMVDEMVEVFDSM--DAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPD 471
            LI  F++   ++  +++FD M  D    +   +N  V GM   GRV  A+KL D M +  
Sbjct: 417  LIDGFNKVGEIERGLKIFDQMKRDQVPPDVVTLNTLVDGMCKLGRVGSAVKLFDVMQRTG 476

Query: 472  AHYPPNKNTFTIVFSSILGRN------------CGGRRLTDEEIYNLFL----------- 582
                 N  T+T++ ++    N               R   D  +Y   +           
Sbjct: 477  IQ--GNAFTYTMLIAAFCSVNNINKAMELFDQMVSSRHSADAILYYSLISGLSRAGRMDD 534

Query: 583  ------RFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLS 744
                  +  + G  LD   +  +I  FCK  + DKA+ +L +   +      ++ NT++S
Sbjct: 535  ASMVVSKLKEAGFCLDIVAYNVLISGFCKKNKLDKAYEMLKDMEETGIKPNTITYNTLIS 594

Query: 745  ELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMRDG 912
               +   +   + ++Q+M   G+ P VVTYG ++   C   +++EAME+ E M  G
Sbjct: 595  HFCKIGSFETAHKVLQKMLNSGLAPTVVTYGSLINAYCMEDKIEEAMELFEWMSSG 650



 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 59/266 (22%), Positives = 111/266 (41%), Gaps = 38/266 (14%)
 Frame = +1

Query: 226  GKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMNVY-- 399
            G   +LF + +      +  + T+LI  F     +++ +E+FD M +   ++  +  Y  
Sbjct: 463  GSAVKLFDVMQRTGIQGNAFTYTMLIAAFCSVNNINKAMELFDQMVSSRHSADAILYYSL 522

Query: 400  VAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLF 579
            ++G+  AGR+DDA  +V ++   +A +  +   + ++ S    +N        ++ Y + 
Sbjct: 523  ISGLSRAGRMDDASMVVSKL--KEAGFCLDIVAYNVLISGFCKKN------KLDKAYEML 574

Query: 580  LRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLH------------------------ 687
                + G   +   +  +I  FCK G  + A  VL                         
Sbjct: 575  KDMEETGIKPNTITYNTLISHFCKIGSFETAHKVLQKMLNSGLAPTVVTYGSLINAYCME 634

Query: 688  ----------EWMSSRSDV--EVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVT 831
                      EWMSS S +    V  N ++  L ++ D      LM +MK +G++PN  T
Sbjct: 635  DKIEEAMELFEWMSSGSKIPPNTVIYNILIDSLCKKNDVKLALSLMNDMKVRGVKPNTTT 694

Query: 832  YGIMVKNLCSLRRLDEAMEVLEKMRD 909
            Y  + K L     L+EA + +++M D
Sbjct: 695  YNALFKGLRENNLLEEAFKFMDQMAD 720


>ref|XP_002320827.2| pentatricopeptide repeat-containing family protein, partial
           [Populus trichocarpa] gi|550323783|gb|EEE99142.2|
           pentatricopeptide repeat-containing family protein,
           partial [Populus trichocarpa]
          Length = 720

 Score =  211 bits (538), Expect = 2e-52
 Identities = 112/292 (38%), Positives = 184/292 (63%), Gaps = 6/292 (2%)
 Frame = +1

Query: 55  SAVSAQSVLQIARRLPDSQNALQFFDCLKTN----PDLSNSASFAFQAVFEHAMRENPKA 222
           S+ S +   QI RRLP S  AL+F + L+ N    PD  +  S+ FQA+FE A  E P +
Sbjct: 36  SSSSPRLFYQITRRLPSSSQALKFLNYLQNNSPSSPDTQSLLSYTFQAIFELAFCE-PDS 94

Query: 223 PGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMNVYV 402
              L  L+K +K+ +  L+VN+ + L++   R+++V+E + +F+ +D  VKN+++ NV++
Sbjct: 95  NANLSRLYKTSKELNIPLTVNAASFLLRASGRSELVEESLILFNDLDPSVKNTYLRNVWL 154

Query: 403 AGMFGAGRVDDALKLVDEMLQP--DAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNL 576
           + +  +GRV DALK++DEM +   D++  PN  T  I+FS +L R      L+++EI NL
Sbjct: 155 SILLRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERNEELLSEDEIVNL 214

Query: 577 FLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGR 756
            L+F + G  +  FW   +I R C+N + ++ W +  E +   + +E  +CN++L+ L R
Sbjct: 215 VLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAR 274

Query: 757 RRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMRDG 912
             ++ RMN LM++M E  IQPNVVT+GI++ ++C  RR+D+A+EVLEKM  G
Sbjct: 275 EGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGG 326


>ref|XP_006397795.1| hypothetical protein EUTSA_v10001319mg [Eutrema salsugineum]
           gi|557098868|gb|ESQ39248.1| hypothetical protein
           EUTSA_v10001319mg [Eutrema salsugineum]
          Length = 776

 Score =  196 bits (499), Expect = 8e-48
 Identities = 114/292 (39%), Positives = 171/292 (58%), Gaps = 6/292 (2%)
 Frame = +1

Query: 49  LLSAVSAQSVL-QIARRLPDSQNALQFFDCLKTNPDL----SNSASFAFQAVFEHAMREN 213
           LLS+ S+  V  QI RRL     A+ F D L    +       S + AFQ+V E+A +E 
Sbjct: 71  LLSSSSSPRVFSQITRRLDSYSLAVSFLDYLNEKSESLKHRDESLAVAFQSVIEYACKE- 129

Query: 214 PKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMN 393
           P +  KL +L++ +K++   L+ N+  LLI+ F R  M+++ V V++ +D  VKN+HV N
Sbjct: 130 PDSRDKLLKLYETSKEKKVPLTFNAAKLLIRWFGRLGMLNQSVLVYEELDPDVKNTHVRN 189

Query: 394 VYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRR-LTDEEIY 570
           V++  +   G VDDALK++DEML+ ++ +PPN++T  IVF   + +    RR +TDEE  
Sbjct: 190 VFIDLLLQGGLVDDALKVLDEMLEKESIFPPNESTVDIVFHGCVSKGKPKRRRVTDEETI 249

Query: 571 NLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSEL 750
            L L+F   G   +  W    I   CKNG+   AW  L + M ++  +E    N +L+ L
Sbjct: 250 QLVLKFGDRGLSPNSVWLTRFITTLCKNGQTLVAWETLSKLMKNKIPLETGPFNALLTSL 309

Query: 751 GRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMR 906
           GR  D GRMN++  EM E GI+ + VT GI++  LC   R+DEA+EV E+MR
Sbjct: 310 GRNMDIGRMNVVAAEMDEMGIRADAVTLGILINTLCKSLRVDEALEVFEQMR 361



 Score = 71.2 bits (173), Expect = 5e-10
 Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 2/204 (0%)
 Frame = +1

Query: 298  LIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMN--VYVAGMFGAGRVDDALKLVDEMLQPD 471
            +IK   R   V   V     M+ +    +V+     +        ++ A+   D+M++  
Sbjct: 452  MIKGICRHLGVSSAVSFLMDMEKEGLQKNVVTYMTLINAYCNVNNIEKAIHWFDQMVE-- 509

Query: 472  AHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCK 651
            A   P+   F  + S +    C  RR  D +   +  +  + G  LD   +  +I  FC 
Sbjct: 510  AGCSPDAKIFYALISGL----CQARR--DHDALAMVEKLKRAGFALDLMAYNMLIGLFCD 563

Query: 652  NGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVT 831
              + D+ + +L +   +    + ++ NT++S  G+ +D+  ++ +M++MK+ G  PNVVT
Sbjct: 564  KNKADEVYEMLTDMEGAGMKPDSITYNTLISYFGKLKDFESVHRMMEKMKKDGFFPNVVT 623

Query: 832  YGIMVKNLCSLRRLDEAMEVLEKM 903
            YG ++   CS  +L+EA++V   M
Sbjct: 624  YGAIIHACCSSGKLNEALKVFNDM 647


>ref|XP_004308336.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 883

 Score =  196 bits (499), Expect = 8e-48
 Identities = 108/270 (40%), Positives = 164/270 (60%)
 Frame = +1

Query: 103 DSQNALQFFDCLKTNPDLSNSASFAFQAVFEHAMRENPKAPGKLYELFKMAKDRDATLSV 282
           D    L F +    +P   +S S A QAV E  +RE      KL+EL++MAK+R+  L+V
Sbjct: 71  DQLQTLLFSNSTSPSP---HSLSSALQAVLELTLRERISEK-KLFELYQMAKERNVELNV 126

Query: 283 NSGTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEML 462
           N+  LLI+   R  M +E + VF  +D+++K++H+ NV +  +   GRVDDALK++DEML
Sbjct: 127 NTAALLIRSLERDGMEEEGLVVFKELDSELKSTHIRNVVIKMLVNMGRVDDALKVLDEML 186

Query: 463 QPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFR 642
            P+A +  ++ T  IV  S+LG+   GR + +EEI  L  +F K G + D     +++  
Sbjct: 187 DPEAQFRVDEITADIVIGSLLGKEKKGRGVGEEEIVGLVSKFGKHGVFPDSRILTKLVTV 246

Query: 643 FCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPN 822
            C+NG+  +AW VL + M     +E  SCN VL+ LGR  D+ RM  +M +M+E GI+PN
Sbjct: 247 LCRNGKVSRAWDVLCDVMKMGGGLEAASCNAVLTALGRSNDFKRMGEVMVKMEEIGIKPN 306

Query: 823 VVTYGIMVKNLCSLRRLDEAMEVLEKMRDG 912
           ++T+G+ V +LC  RR+D A+ V EKM  G
Sbjct: 307 LITFGLFVNHLCKSRRIDAALGVFEKMSVG 336



 Score = 66.2 bits (160), Expect = 2e-08
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 2/224 (0%)
 Frame = +1

Query: 238  ELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSM--DAQVKNSHVMNVYVAGM 411
            ELF+  K+    L+V +   L+    R   ++  +E F  M  D    N+    + ++  
Sbjct: 404  ELFEKMKEEGIPLNVVTLNTLLDGLCRHGRLNAALEFFKEMQRDGLKGNAVSYTLLISSF 463

Query: 412  FGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFV 591
                 +  A++L ++ML   A  P +   +  + S +   +  GR    E+   +  +  
Sbjct: 464  CDVNNISKAMELFNQMLS--AECPTDVRVYHCLISCL---SLAGRM---EDASFVVSKLK 515

Query: 592  KPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYG 771
            + G  +D   +  MI  F      DK   ++ E  +SR   + V+ NT+L+ L + RD+ 
Sbjct: 516  EAGFSMDTVSYNVMIKGFSGKNMPDKIHEMIEEMEASRVKPDSVTYNTLLAYLSKARDFK 575

Query: 772  RMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
              + ++  M ++GI P VVTYG ++   C    +D+AM +   M
Sbjct: 576  GAHKVLDRMMDEGIVPTVVTYGTLIHAHCLDGNIDKAMRIFRDM 619


>ref|XP_004301483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 771

 Score =  196 bits (498), Expect = 1e-47
 Identities = 116/302 (38%), Positives = 174/302 (57%), Gaps = 9/302 (2%)
 Frame = +1

Query: 34  PKLGDLL-----SAVSAQSVLQIARRLPDSQNALQFFDCLKTN--PDLSNSA--SFAFQA 186
           P+L  LL     S+ S +S+L I RRL     AL+FFD +  N  P     A  S +FQA
Sbjct: 67  PQLQTLLFPNSTSSPSPRSLLHITRRLASPNKALKFFDFVSQNLTPQDPPKALLSSSFQA 126

Query: 187 VFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDA 366
           + E  +R+ P +   LYEL+KMAKDR+  +S  +  LL++   RA M +E + VF+ +++
Sbjct: 127 LVELTLRQ-PPSETNLYELYKMAKDRNVPISPKAAGLLVQSMGRAGMEEEALIVFNELES 185

Query: 367 QVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGR 546
            +K +H+ NV +      GRVD ALK++DEML P+A++  ++ T  +V    L     GR
Sbjct: 186 GLKTTHIRNVVIGMSLKMGRVDGALKVLDEMLDPEANFQVDEYTVDVVVGLFLRGEIRGR 245

Query: 547 RLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVS 726
            +++EEI  L  +F   G + +     +++   C+N +   AW VLH+ M     VE   
Sbjct: 246 SVSEEEIAELVSKFGGRGVFPNSMVLTKLVSGLCRNRKVSLAWDVLHDVMKKGGAVEAAP 305

Query: 727 CNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMR 906
            N +LS LGR  ++ RM  LM +M+E GI+PNV+T+GI++  LC  RR+  AMEV EKM 
Sbjct: 306 YNALLSALGRGNEFKRMRELMAKMEEMGIKPNVITFGILINRLCKSRRIGAAMEVFEKMS 365

Query: 907 DG 912
            G
Sbjct: 366 GG 367



 Score = 65.1 bits (157), Expect = 4e-08
 Identities = 52/227 (22%), Positives = 103/227 (45%), Gaps = 2/227 (0%)
 Frame = +1

Query: 229  KLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQ--VKNSHVMNVYV 402
            K +ELF   K+    ++V++   ++   SR   ++  +E F+ M+ +    N+    + +
Sbjct: 431  KGHELFDKMKEEGIPMNVSTLNTMLDGLSRRGRLNTALEFFNEMERKGLKGNAVTYTILI 490

Query: 403  AGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFL 582
                    +  A++L D+ML      P +   +  + S   G +  GR    E+   +  
Sbjct: 491  TSFCNVTNIRKAMELFDQMLSSGC--PTDAKVYHCLIS---GLSQAGRM---EDASFVVS 542

Query: 583  RFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRR 762
            +  + G  +D   +  MI  F    + DK   ++ E   SR   + V+ NT+L+ LG+  
Sbjct: 543  KMKEAGFSMDIVSYNGMIRGFSSKNKPDKIHEMIEEMEVSRVKPDSVTYNTLLAYLGKSG 602

Query: 763  DYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
            D+   + ++  M  +GI P VVT+G ++   C    +++AM +   M
Sbjct: 603  DFESAHKVLDRMLSEGIVPTVVTFGTLIHAHCLDGDIEKAMRIFRDM 649


>ref|XP_006292416.1| hypothetical protein CARUB_v10018630mg [Capsella rubella]
           gi|482561123|gb|EOA25314.1| hypothetical protein
           CARUB_v10018630mg [Capsella rubella]
          Length = 767

 Score =  189 bits (479), Expect = 2e-45
 Identities = 115/301 (38%), Positives = 171/301 (56%), Gaps = 7/301 (2%)
 Frame = +1

Query: 22  WPANPKLGDLLSAVSAQSVL---QIARRLPDSQNALQFFDCLK-TNPDLSN---SASFAF 180
           W ++  L  LL + S+ S L   QI RRL     A+ FF+ L  T+  L     S S   
Sbjct: 60  WASSESLSSLLVSSSSVSPLVFPQITRRLGSYSLAISFFEYLDATSQSLKRREESLSLTL 119

Query: 181 QAVFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSM 360
           Q+V E A  E P +  KL +L+++A +++   +V +  LLI+ F R  MV++ V V++ +
Sbjct: 120 QSVIEFAGSE-PDSQDKLLQLYEIAIEKNIPFTVVATKLLIRWFGRMGMVNQSVLVYERL 178

Query: 361 DAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCG 540
           D+ +KN+ V NV +  +   G VDDA K++DEM Q D+ +PPN+ T  IV   +      
Sbjct: 179 DSNMKNTQVRNVVIEVLLRNGLVDDAFKVLDEMFQKDSVFPPNRITADIVLHEVWK---- 234

Query: 541 GRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEV 720
           G+ LT+E I  L  RF   G   +  W    I   CKNG  + AW +L + M + + +E 
Sbjct: 235 GKLLTEENIIGLISRFSSHGVSPNSVWLTRFITSLCKNGRTNAAWDILSDLMENNAPLEA 294

Query: 721 VSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEK 900
              NT+LS LGR  + GRMN L+ +M E GI+P+VVT G+++  LC  RR+DEA+EV E+
Sbjct: 295 PPFNTLLSCLGRNMNIGRMNALVLKMDEMGIRPDVVTLGVLINTLCKSRRIDEALEVFEQ 354

Query: 901 M 903
           M
Sbjct: 355 M 355



 Score = 67.8 bits (164), Expect = 6e-09
 Identities = 33/132 (25%), Positives = 72/132 (54%)
 Frame = +1

Query: 508 VFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLH 687
           ++ +++   C  RR  + ++  +  +  + G  LD   +  +I  FC     +K + +L 
Sbjct: 513 IYYALISGLCQVRR--EHDVIRVVEKLKERGFSLDLLAYNMLIGLFCDKNNTEKVYEMLR 570

Query: 688 EWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLR 867
           +        + ++ NT++S  G+ +D+  +  +M+EM+E G+ P VVTYG ++   CS+ 
Sbjct: 571 DMEKEGMKPDSITYNTLISFFGKLKDFESVQRMMEEMREDGLDPTVVTYGAVIDAYCSVG 630

Query: 868 RLDEAMEVLEKM 903
            L+EA+++ ++M
Sbjct: 631 ELNEAVKLFKEM 642



 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 47/226 (20%), Positives = 99/226 (43%), Gaps = 3/226 (1%)
 Frame = +1

Query: 235 YELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHV--MNVYVAG 408
           +++     + +A L       L+ C  R   +  M  +   MD       V  + V +  
Sbjct: 279 WDILSDLMENNAPLEAPPFNTLLSCLGRNMNIGRMNALVLKMDEMGIRPDVVTLGVLINT 338

Query: 409 MFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRF 588
           +  + R+D+AL++ ++M              +I F++++   C   RL + E   L +R 
Sbjct: 339 LCKSRRIDEALEVFEQMCGKRTDDGNMIKADSIHFNTLIDGLCKMGRLKEAE--ELLVRM 396

Query: 589 VKPGNYL-DEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRD 765
               N   +   +  +I  +C+ G+ + A  V+ +         VV+ NT++  + R   
Sbjct: 397 KVEENCAPNTVTYNCLIDGYCRAGKLETAKEVVSKMKEEGIKPNVVTLNTIVGGMCRHHG 456

Query: 766 YGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
                L + +M+++G++ NV+TY  ++   C +  +++AM   EKM
Sbjct: 457 LNMAVLFLMDMEKEGVKGNVITYMTLIHACCYVNNIEKAMHWYEKM 502


>ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75183498|sp|Q9M316.1|PP292_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g61520, mitochondrial; Flags: Precursor
           gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis
           thaliana] gi|332646696|gb|AEE80217.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score =  189 bits (479), Expect = 2e-45
 Identities = 118/302 (39%), Positives = 169/302 (55%), Gaps = 7/302 (2%)
 Frame = +1

Query: 22  WPANPKLGDLLSAVSAQSVL---QIARRLPDSQNALQFFDCLKTNPDL----SNSASFAF 180
           W ++  L  L+ + S+ S L   QI RRL     A+ FF+ L            S S A 
Sbjct: 60  WASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRREESLSLAL 119

Query: 181 QAVFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSM 360
           Q+V E A  E P    KL  L+++AK+++  L+V +  LLI+ F R  MV++ V V++ +
Sbjct: 120 QSVIEFAGSE-PDPRDKLLRLYEIAKEKNIPLTVVATNLLIRWFGRMGMVNQSVLVYERL 178

Query: 361 DAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCG 540
           D+ +KNS V NV V  +   G VDDA K++DEMLQ ++ +PPN+ T  IV   +      
Sbjct: 179 DSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK---- 234

Query: 541 GRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEV 720
           GR LT+E+I  L  RF   G   +  W    I   CKN   + AW +L + M +++ +E 
Sbjct: 235 GRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEA 294

Query: 721 VSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEK 900
              N +LS LGR  D  RMN L+ +M E  I+P+VVT GI++  LC  RR+DEA+EV EK
Sbjct: 295 PPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEK 354

Query: 901 MR 906
           MR
Sbjct: 355 MR 356



 Score = 67.0 bits (162), Expect = 1e-08
 Identities = 33/132 (25%), Positives = 69/132 (52%)
 Frame = +1

Query: 508 VFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLH 687
           ++ +++   C  RR  D +   +  +  + G  LD   +  +I  FC     +K + +L 
Sbjct: 513 IYYALISGLCQVRR--DHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLT 570

Query: 688 EWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLR 867
           +        + ++ NT++S  G+ +D+  +  +M++M+E G+ P V TYG ++   CS+ 
Sbjct: 571 DMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVG 630

Query: 868 RLDEAMEVLEKM 903
            LDEA+++ + M
Sbjct: 631 ELDEALKLFKDM 642


>ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324225|gb|EFH54646.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 766

 Score =  187 bits (476), Expect = 4e-45
 Identities = 114/301 (37%), Positives = 170/301 (56%), Gaps = 7/301 (2%)
 Frame = +1

Query: 22  WPANPKLGDLLSAVSAQSVL---QIARRLPDSQNALQFFDCLKTNPDL----SNSASFAF 180
           W ++  L  LL + S+ S L   QI RRL     A+ FF+ L +          S S A 
Sbjct: 60  WASSESLSSLLVSSSSHSPLVFSQITRRLGSYSLAISFFEYLDSKSQSLKRREESLSLAL 119

Query: 181 QAVFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSM 360
           Q+V E A  E P +  KL  L+++AK+++  L+V +  LLI+ F R  M ++ V V++ +
Sbjct: 120 QSVIEFAGSE-PDSRDKLLRLYEIAKEKNIPLTVVATKLLIRWFGRMGMANQSVLVYERL 178

Query: 361 DAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCG 540
           D+ +KNS V NV +  +   G VDDA K++DEMLQ ++ +PPN+ T  IV   +      
Sbjct: 179 DSNMKNSQVRNVVIDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK---- 234

Query: 541 GRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEV 720
           GR LT+E+I  L  RF   G   +  W    I   CKN   + AW +L + M +++ +E 
Sbjct: 235 GRLLTEEKIIGLISRFSSHGVSPNSVWLTRFISSLCKNARTNAAWDILSDLMKNKAPLEA 294

Query: 721 VSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEK 900
              N +LS LGR  + GRMN L+ +M E  I+P+VVT GI++  LC  RR+DEA++V E+
Sbjct: 295 PPFNALLSCLGRNMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQ 354

Query: 901 M 903
           M
Sbjct: 355 M 355



 Score = 63.2 bits (152), Expect = 1e-07
 Identities = 38/159 (23%), Positives = 79/159 (49%)
 Frame = +1

Query: 427 VDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNY 606
           ++ A+   D+ML+  A   P+   +  + S +    C  RR  D +   +  +  + G  
Sbjct: 492 IEKAMHWFDKMLE--AGCSPDAKIYYALISGL----CQVRR--DHDAIRVVEKLREGGFS 543

Query: 607 LDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLL 786
           LD   +  +I  FC     +K + +L +        + ++ NT++S  G+ +D+  +  +
Sbjct: 544 LDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERM 603

Query: 787 MQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
           M++M+E  + P V TYG +++  CS+  L EA+++ + M
Sbjct: 604 MEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDM 642



 Score = 57.4 bits (137), Expect = 8e-06
 Identities = 46/205 (22%), Positives = 92/205 (44%), Gaps = 3/205 (1%)
 Frame = +1

Query: 298 LIKCFSRAKMVDEMVEVFDSMDAQVKNSHV--MNVYVAGMFGAGRVDDALKLVDEMLQPD 471
           L+ C  R   +  M  +   MD       V  + + +  +  + RVD+AL++ ++M    
Sbjct: 300 LLSCLGRNMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQMCGKR 359

Query: 472 AHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYL-DEFWWKEMIFRFC 648
                     +I F++++   C   RL + E   L +R       + +   +  +I  +C
Sbjct: 360 TDDGNVIKADSIHFNTLIDGLCKVGRLKEAE--ELLVRMKMEERCVPNTVTYNCLIDGYC 417

Query: 649 KNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVV 828
           + G+ + A  V+          +VV+ NT++  + R        L   +M+++G++ NVV
Sbjct: 418 RAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVV 477

Query: 829 TYGIMVKNLCSLRRLDEAMEVLEKM 903
           TY  ++   CSL  +++AM   +KM
Sbjct: 478 TYMTLIHACCSLSNIEKAMHWFDKM 502


>ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|9502152|gb|AAF88005.1| similar to a large family of
           Arabidopsis thaliana salt inducible protein-like
           proteins; contains similarity to Pfam family PF01535
           (Domain of unknown function), score=340.5, E=1.9e-98,
           N=2 [Arabidopsis thaliana] gi|332006410|gb|AED93793.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 727

 Score =  184 bits (468), Expect = 3e-44
 Identities = 116/309 (37%), Positives = 170/309 (55%), Gaps = 7/309 (2%)
 Frame = +1

Query: 1   QTSDPISWPANPKLGDLLSAVSAQSVL---QIARRLPDSQNALQFFDCLKTNPDL----S 159
           Q +    W ++  L  L+ + S+ S L   QI RRL     A+ FF+ L           
Sbjct: 53  QNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRRE 112

Query: 160 NSASFAFQAVFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEM 339
            S S A Q+V E A  E P    KL  L+++AK+++  L++ +  LLI+ F R  MV++ 
Sbjct: 113 ESLSLALQSVIEFAGSE-PDPRDKLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQS 171

Query: 340 VEVFDSMDAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSS 519
           V V++ +D+ +KNS V NV V  +   G VDDA K++DEMLQ ++ +PPN+ T  IV   
Sbjct: 172 VLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHE 231

Query: 520 ILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMS 699
           +       R LT+E+I  L  RF   G   +  W    I   CKN   + AW +L + M 
Sbjct: 232 VWKE----RLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMK 287

Query: 700 SRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDE 879
           +++ +E    N +LS LGR  D  RMN L+ +M E  I+P+VVT GI++  LC  RR+DE
Sbjct: 288 NKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDE 347

Query: 880 AMEVLEKMR 906
           A+EV E+MR
Sbjct: 348 ALEVFEQMR 356



 Score = 67.4 bits (163), Expect = 7e-09
 Identities = 33/132 (25%), Positives = 69/132 (52%)
 Frame = +1

Query: 508 VFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLH 687
           ++ +++   C  RR  D +   +  +  + G  LD   +  +I  FC     +K + +L 
Sbjct: 513 IYYALISGLCQVRR--DHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLT 570

Query: 688 EWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLR 867
           +        + ++ NT++S  G+ +D+  +  +M++M+E G+ P V TYG ++   CS+ 
Sbjct: 571 DMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVG 630

Query: 868 RLDEAMEVLEKM 903
            LDEA+++ + M
Sbjct: 631 ELDEALKLFKDM 642


>ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g28460 gi|9502149|gb|AAF88002.1| contains similarity
           to Pfam family PF01535 (Domain of unknown function),
           score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
           gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120
           [Arabidopsis thaliana] gi|27363272|gb|AAO11555.1|
           At5g28460/F21B23_120 [Arabidopsis thaliana]
           gi|332006418|gb|AED93801.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score =  184 bits (468), Expect = 3e-44
 Identities = 116/309 (37%), Positives = 170/309 (55%), Gaps = 7/309 (2%)
 Frame = +1

Query: 1   QTSDPISWPANPKLGDLLSAVSAQSVL---QIARRLPDSQNALQFFDCLKTNPDL----S 159
           Q +    W ++  L  L+ + S+ S L   QI RRL     A+ FF+ L           
Sbjct: 53  QNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRRE 112

Query: 160 NSASFAFQAVFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEM 339
            S S A Q+V E A  E P    KL  L+++AK+++  L++ +  LLI+ F R  MV++ 
Sbjct: 113 ESLSLALQSVIEFAGSE-PDPRDKLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQS 171

Query: 340 VEVFDSMDAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSS 519
           V V++ +D+ +KNS V NV V  +   G VDDA K++DEMLQ ++ +PPN+ T  IV   
Sbjct: 172 VLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHE 231

Query: 520 ILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMS 699
           +       R LT+E+I  L  RF   G   +  W    I   CKN   + AW +L + M 
Sbjct: 232 VWKE----RLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMK 287

Query: 700 SRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDE 879
           +++ +E    N +LS LGR  D  RMN L+ +M E  I+P+VVT GI++  LC  RR+DE
Sbjct: 288 NKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDE 347

Query: 880 AMEVLEKMR 906
           A+EV E+MR
Sbjct: 348 ALEVFEQMR 356



 Score = 67.4 bits (163), Expect = 7e-09
 Identities = 33/132 (25%), Positives = 69/132 (52%)
 Frame = +1

Query: 508 VFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLH 687
           ++ +++   C  RR  D +   +  +  + G  LD   +  +I  FC     +K + +L 
Sbjct: 513 IYYALISGLCQVRR--DHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLT 570

Query: 688 EWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLR 867
           +        + ++ NT++S  G+ +D+  +  +M++M+E G+ P V TYG ++   CS+ 
Sbjct: 571 DMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVG 630

Query: 868 RLDEAMEVLEKM 903
            LDEA+++ + M
Sbjct: 631 ELDEALKLFKDM 642


>gb|AAM61467.1| unknown [Arabidopsis thaliana]
          Length = 766

 Score =  183 bits (465), Expect = 7e-44
 Identities = 117/309 (37%), Positives = 170/309 (55%), Gaps = 7/309 (2%)
 Frame = +1

Query: 1   QTSDPISWPANPKLGDLLSAVSAQSVL---QIARRLPDSQNALQFFDCLKTNPDL----S 159
           Q +    W ++  L  L+ + S+ S L   QI RRL     A+ FF+ L           
Sbjct: 53  QNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRRE 112

Query: 160 NSASFAFQAVFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEM 339
            S S A Q+V E A  E P    KL  L+++AK+++  L+V +  LLI+ F R  MV++ 
Sbjct: 113 ESLSLALQSVIEFAGSE-PDPRDKLLRLYEIAKEKNIPLTVVATKLLIRWFGRMGMVNQS 171

Query: 340 VEVFDSMDAQVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSS 519
           V V++ +D+ +KNS V NV V  +   G VDDA K++DEMLQ ++ +PPN+ T  IV   
Sbjct: 172 VLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHE 231

Query: 520 ILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMS 699
           +      GR LT+E+I  L  RF   G   +  W    I   CKN   + AW +L + M 
Sbjct: 232 VWK----GRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMK 287

Query: 700 SRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDE 879
           +++ +E    N +LS LGR  D  RMN L+ +M E  I+P+VVT GI++  L   RR+DE
Sbjct: 288 NKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLSKSRRVDE 347

Query: 880 AMEVLEKMR 906
           A+EV E+MR
Sbjct: 348 ALEVFEQMR 356



 Score = 67.4 bits (163), Expect = 7e-09
 Identities = 33/132 (25%), Positives = 69/132 (52%)
 Frame = +1

Query: 508 VFSSILGRNCGGRRLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLH 687
           ++ +++   C  RR  D +   +  +  + G  LD   +  +I  FC     +K + +L 
Sbjct: 513 IYYALISGLCQVRR--DHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLT 570

Query: 688 EWMSSRSDVEVVSCNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLR 867
           +        + ++ NT++S  G+ +D+  +  +M++M+E G+ P V TYG ++   CS+ 
Sbjct: 571 DMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVG 630

Query: 868 RLDEAMEVLEKM 903
            LDEA+++ + M
Sbjct: 631 ELDEALKLFKDM 642


>ref|XP_007160491.1| hypothetical protein PHAVU_002G326200g [Phaseolus vulgaris]
           gi|561033906|gb|ESW32485.1| hypothetical protein
           PHAVU_002G326200g [Phaseolus vulgaris]
          Length = 760

 Score =  181 bits (459), Expect = 4e-43
 Identities = 104/285 (36%), Positives = 162/285 (56%), Gaps = 4/285 (1%)
 Frame = +1

Query: 64  SAQSVLQIARRLPDSQNALQFFDCLKTNPDLSNSASFAFQAVFEHAMRENPKAPGKLYEL 243
           ++  +L I  RL     AL F + L    +   + S  F+   E A  ++P +  +L  L
Sbjct: 69  ASHHLLHITIRLNSIPKALDFINFLGDRTEHHQALSRVFEGALELAT-QHPNSQKELLML 127

Query: 244 FKMAKDRDATLSVNS--GTLLIKCFSRAKMVDEMVEVFDSMDAQVKNSHVMNVYVAGMFG 417
               K     +++ S  G LL+KC  +A+MV++ + +F  +D+  K+S + N  + G+F 
Sbjct: 128 HSYRKSIGGRIALTSRSGFLLLKCLGKAQMVEDSLILFKELDSSSKSSEICNELLKGLFR 187

Query: 418 AGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFVKP 597
           +G +D AL ++DEML+ D+ +PPN  T  +VF  +  +   GR   DEEI  L  +  + 
Sbjct: 188 SGGIDGALHVLDEMLERDSDFPPNNFTGEVVFRVLGEQERRGRSFADEEIMGLVTKLCEH 247

Query: 598 GNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWM--SSRSDVEVVSCNTVLSELGRRRDYG 771
           G + D F   +MI + C++ +   AW VLH  M       VE  SCN +L+ LGR RD  
Sbjct: 248 GVFPDTFKLTQMITKLCRHRKNGVAWEVLHVVMRLGGAVAVEAASCNALLAGLGRERDIQ 307

Query: 772 RMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMR 906
           RMN LM EM+E GI+P+VVT+GI+V +LC  RR+DEA++V +K+R
Sbjct: 308 RMNKLMAEMEEMGIKPSVVTFGILVNHLCKARRIDEALQVFDKLR 352



 Score = 84.0 bits (206), Expect = 8e-14
 Identities = 59/232 (25%), Positives = 112/232 (48%), Gaps = 6/232 (2%)
 Frame = +1

Query: 226  GKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQ--VKNSHVMNVY 399
            GK  EL+    +     SV +   ++    +   V   VE F+ M  +    N+      
Sbjct: 420  GKARELYSQMIEEGVQPSVVTLNTMVNGLCKHGKVHNAVEFFNEMKGKGLKGNAVTYTAL 479

Query: 400  VAGMFGAGRVDDALKLVDEMLQ----PDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEI 567
            ++   G   +D A++  D+ML     PDA          IV+ S++       R+ D  +
Sbjct: 480  ISAFCGVNNIDKAMQYFDDMLSSGCSPDA----------IVYYSLISGLSTAGRMDDASV 529

Query: 568  YNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSE 747
              +  R  + G  LD   +  +I  FCK  + ++ + +L+E   +    ++V+ NT++S 
Sbjct: 530  --VVSRLKQAGFGLDLTCYNVLISGFCKKKKLERVYEMLNEMEVTGVKPDIVTYNTLVSY 587

Query: 748  LGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
            LG+  D+   + +M+ M ++G++P+VVTYG ++   C  + +DEAM++ E+M
Sbjct: 588  LGKIGDFETASNVMKRMIKEGLEPSVVTYGAVIHAYCLKKNVDEAMKIFEQM 639


>ref|XP_004300812.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 763

 Score =  180 bits (457), Expect = 6e-43
 Identities = 110/302 (36%), Positives = 172/302 (56%), Gaps = 9/302 (2%)
 Frame = +1

Query: 34  PKLGDLL-----SAVSAQSVLQIARRLPDSQNALQFFDCLKTN--PDLSNSA--SFAFQA 186
           P+L  LL     S+ S +++L I R L     AL+FFD +  N  P     A  S +F+A
Sbjct: 64  PQLHTLLFPSSTSSPSPRTLLHITRCLASPTKALKFFDFVSQNLTPQDPPKAVLSSSFEA 123

Query: 187 VFEHAMRENPKAPGKLYELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDA 366
           + E  +R+ P +   LYEL+KMAKDR+  +S  +  LL++   RA M +E + VF+ +D+
Sbjct: 124 LVELTLRQ-PPSETNLYELYKMAKDRNVPISPKAVRLLVQSMRRAGMEEEALLVFNELDS 182

Query: 367 QVKNSHVMNVYVAGMFGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGR 546
            +K + + N  +  +   GRVDDALK++DEML P+A +  +  T  +  S  +     GR
Sbjct: 183 ALKTTFIRNEAIGLLLKMGRVDDALKVLDEMLDPEAKFQVDDFTVGLFLSGEIR----GR 238

Query: 547 RLTDEEIYNLFLRFVKPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVS 726
            +++EEI     +F +   + +     +++   C+N +   AW VLH+ M     +E   
Sbjct: 239 SVSEEEIVEFVSKFGERVVFPNSVVLTKLVSGLCRNRKVGLAWDVLHDVMKKGGALEAAP 298

Query: 727 CNTVLSELGRRRDYGRMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKMR 906
           CN +LS LGR  ++ RM  LM +M+E GI+P+V+T+GI++  LC  RR+D AMEV EKM 
Sbjct: 299 CNALLSALGRGNEFERMRELMAKMEEMGIKPDVITFGILINRLCQSRRIDAAMEVFEKMS 358

Query: 907 DG 912
            G
Sbjct: 359 GG 360



 Score = 61.6 bits (148), Expect = 4e-07
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 2/224 (0%)
 Frame = +1

Query: 238  ELFKMAKDRDATLSVNSGTLLIKCFSRAKMVDEMVEVFDSMDAQ-VKNSHVM-NVYVAGM 411
            ELF   K+    ++V++   ++   SR   ++  +E F+ M+ + +K   V   + +   
Sbjct: 427  ELFDKMKEEGIPMNVSTLNTMLDGLSRRGRLNTALEFFNEMERKGLKGDFVTYTILITSF 486

Query: 412  FGAGRVDDALKLVDEMLQPDAHYPPNKNTFTIVFSSILGRNCGGRRLTDEEIYNLFLRFV 591
                 +  A++L D+ML      P +   +  + S   G +  GR    E+   +  +  
Sbjct: 487  CNVTNIHKAMELFDQML---TGCPTDAKVYRRLIS---GLSQAGRM---EDASFVVSKLK 537

Query: 592  KPGNYLDEFWWKEMIFRFCKNGECDKAWHVLHEWMSSRSDVEVVSCNTVLSELGRRRDYG 771
            + G  +D   +  MI  FC   + DK   ++ E  +S    + V+ NT+L+ LG+  D  
Sbjct: 538  EAGFSMDIVSYNVMIHGFCSENKPDKIHEMIEEMEASGVKPDSVTYNTLLAYLGKHGDIE 597

Query: 772  RMNLLMQEMKEKGIQPNVVTYGIMVKNLCSLRRLDEAMEVLEKM 903
                +   M  +G+ P VVT+G ++   C    +++AM +   M
Sbjct: 598  SAYKVFDRMLNEGVVPTVVTFGTLIHAHCLDGDIEKAMRIFRDM 641