BLASTX nr result
ID: Mentha22_contig00036535
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha22_contig00036535
(1064 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera] 371 e-100
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624... 363 7e-98
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 356 1e-95
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 353 5e-95
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera] 353 9e-95
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 351 3e-94
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 350 4e-94
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera] 350 7e-94
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera] 348 2e-93
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 348 3e-93
gb|AAB82754.1| retrofit [Oryza longistaminata] 347 5e-93
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc... 347 6e-93
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 346 8e-93
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 346 8e-93
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 346 1e-92
gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-... 346 1e-92
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 343 5e-92
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa... 343 7e-92
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc... 342 1e-91
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 342 1e-91
>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
Length = 1002
Score = 371 bits (952), Expect = e-100
Identities = 188/337 (55%), Positives = 243/337 (72%)
Frame = +1
Query: 7 GFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGDVK 186
GF STSD SLF G ++LVYVDD+LITG++ V LIQ LQ++F LK G VK
Sbjct: 660 GFISSTSDTSLFIYKHNGNFLLLLVYVDDLLITGNNVPLVQTLIQDLQNRFALKDLGLVK 719
Query: 187 YFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVFTDPS 366
FLG E ++ + L+Q KY +LL KT M PTPM KL + G F+DP+
Sbjct: 720 DFLGFEALRTT-TGLHLTQSKYTTDLLIKTKMHSAKPVPTPMSAALKLHAASGPAFSDPT 778
Query: 367 LYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGLRFSP 546
LYRS +G LQYLT TRPDIAF+VNKLSQ+L PT LHW ACKR+LRYLKG GL F+P
Sbjct: 779 LYRSTIGALQYLTYTRPDIAFAVNKLSQYLQQPTELHWTACKRVLRYLKGIVHRGLHFTP 838
Query: 547 ASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYRSAAN 726
AS+L L+ ++DADWA +DD RST G+CVFLG NL W+++KQ VV+RSST++EYR+ A+
Sbjct: 839 ASSLHLQVYTDADWASSIDDRRSTTGYCVFLGTNLFTWSSRKQPVVARSSTKAEYRALAH 898
Query: 727 LTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIREKIS 906
+ +V WL+S+F ELGI L++ P +WCDN GA ALAANPVFHSRTKH+EVD+ ++RE++
Sbjct: 899 ASXEVAWLRSLFSELGISLVNTPVIWCDNQGAGALAANPVFHSRTKHIEVDVXYVREQVL 958
Query: 907 AKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKLKL 1017
K++ + YVP+V+Q AD+FTKPL+ RF +L KL L
Sbjct: 959 DKKLVVSYVPSVEQXADLFTKPLSIPRFQYLLTKLNL 995
>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
Length = 1682
Score = 363 bits (932), Expect = 7e-98
Identities = 183/337 (54%), Positives = 238/337 (70%)
Frame = +1
Query: 7 GFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGDVK 186
GF S SD SLF++ + + VLVYVDDI+ITG S V +I +Q+ F LK G +
Sbjct: 493 GFQNSRSDNSLFYKWIGDQVIFVLVYVDDIIITGSSDKMVQQVITNMQNAFALKDLGKLS 552
Query: 187 YFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVFTDPS 366
YFLGIEV ++A S LSQ KY+ ++L K NM +C PTPM T L+K G V ++ S
Sbjct: 553 YFLGIEVTKTA-SGIYLSQSKYIADILAKHNMADCSPVPTPMATGHYLTKGSGSVISNSS 611
Query: 367 LYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGLRFSP 546
Y+S VG LQY+TLTRP+IAFSVNKLSQFL +PT HW++CKRLLRYLKGT FGL F
Sbjct: 612 QYKSAVGALQYVTLTRPEIAFSVNKLSQFLASPTAEHWESCKRLLRYLKGTIHFGLHFYH 671
Query: 547 ASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYRSAAN 726
+ + FSD+DWA DD +S G+ V+LG NLV W++KKQ VVSRSSTE+EYR+ A
Sbjct: 672 YGTMQINCFSDSDWACDKDDRKSVAGYAVYLGSNLVSWSSKKQAVVSRSSTEAEYRALAQ 731
Query: 727 LTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIREKIS 906
T +V W+QS+ KEL I L+ P +WCDN A+ALA NPV+H++TKHVE+DIHFIR+K++
Sbjct: 732 ATAEVTWIQSLLKELHIHLVTAPIMWCDNQSAIALAHNPVYHAKTKHVELDIHFIRDKVT 791
Query: 907 AKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKLKL 1017
AKQI + ++P+ DQ AD+ TK L +F +LR KL +
Sbjct: 792 AKQITVQFIPSEDQNADVLTKALTFNQFHYLRSKLNV 828
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 356 bits (913), Expect = 1e-95
Identities = 177/337 (52%), Positives = 235/337 (69%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
+ GF + SD SLF R VLVYVDDI++TG S ++ LI L+ F LK G+
Sbjct: 915 QFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELISRLRGLFSLKDLGE 974
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVFTD 360
+ YFLGIEV ++A LSQKKY+ +LL+KT M S PTPM++ KLS GD +
Sbjct: 975 LSYFLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSGLKLSAGMGDPIDN 1034
Query: 361 PSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGLRF 540
YRSVVG LQY+T+TRP+IAFSVNK+ QF+ P + HWKA KR+LRYL GT+ G+
Sbjct: 1035 VFEYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVKRILRYLNGTTDLGIVL 1094
Query: 541 SPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYRSA 720
P+ + L GF DADW VDD RST GHCVFLG +LV W++KKQ SRSSTE+EYRS
Sbjct: 1095 KPSETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWSSKKQHTTSRSSTEAEYRSL 1154
Query: 721 ANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIREK 900
A+LT++++WLQS+ EL ++ +P +WCDN V+L+ANPV HSRTKH+E+D++F+REK
Sbjct: 1155 ASLTSEMLWLQSLLSELQTKMTMVPVIWCDNISTVSLSANPVLHSRTKHMELDLYFVREK 1214
Query: 901 ISAKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKL 1011
+ +++ + +VP DQVAD+FTKPL+ F LR+KL
Sbjct: 1215 VMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKL 1251
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 353 bits (907), Expect = 5e-95
Identities = 177/328 (53%), Positives = 233/328 (71%), Gaps = 2/328 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
++GF S +D SLF ++ VL+YVDDI++T V L++ LQ +F LK GD
Sbjct: 905 DMGFQGSKADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGD 964
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV + +G VL+Q KYV++LL++ NM +C TP+ T KLS +EGD
Sbjct: 965 LHYFLGIEVTKVSGG-IVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGP 1023
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D + YRSVVG LQYLTLTRPDIAF VNK+ QFLH PT HW A KR+LRYLK + GL
Sbjct: 1024 NDATHYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGL 1083
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
+ S + ++++ +SDADWAG +DD RSTGG VFLG NLV W+A+KQ VSRSSTESEY+
Sbjct: 1084 KLSKSRSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWSARKQATVSRSSTESEYK 1143
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN T +++W+Q++ EL ++ + KLWCDN GA L+ANPVFH+RTKH+EVD HF+R
Sbjct: 1144 ALANATAEIMWVQTLLAELQVESPSMAKLWCDNLGAKYLSANPVFHARTKHIEVDYHFVR 1203
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLA 978
E++S K +EI +VP DQVAD FTK L+
Sbjct: 1204 ERVSRKLLEIDFVPTGDQVADGFTKALS 1231
>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
Length = 1271
Score = 353 bits (905), Expect = 9e-95
Identities = 179/338 (52%), Positives = 237/338 (70%), Gaps = 1/338 (0%)
Frame = +1
Query: 7 GFHRSTSDFSLF-HRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGDV 183
GF S +D S+F H + VL I+L+YVDDIL+TG S A+V I L F L+ G V
Sbjct: 880 GFQASRADSSMFIHHSTHDVL-ILLIYVDDILVTGSSSAQVSSFITRLNSSFALRDLGYV 938
Query: 184 KYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVFTDP 363
YFLGIEV +S G+ F LSQ KY +LL +T ML+ TP + LS +G+ F+D
Sbjct: 939 NYFLGIEVVRS-GTMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLGQTLSHLDGEPFSDA 997
Query: 364 SLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGLRFS 543
+LYRS VG LQYLTLTRPDI+F+VNK QF+ TPT HW A KR+LRYLKGT +G++
Sbjct: 998 TLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKRILRYLKGTLSYGIQMQ 1057
Query: 544 PASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYRSAA 723
+++L + G++DADWA C DD RSTGG+ +FLG NLV W++ KQ VVSRSS ESEYR+ A
Sbjct: 1058 QSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVSRSSAESEYRALA 1117
Query: 724 NLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIREKI 903
+ T+++IW+Q V +EL + P LWCDN A LAANPVFH+RTKH+E+D+HFIR+ +
Sbjct: 1118 SATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHARTKHIEMDLHFIRDHV 1177
Query: 904 SAKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKLKL 1017
KQ+ I Y+P+ +QVADIFTK ++ ++F R KL +
Sbjct: 1178 LRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSV 1215
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 351 bits (900), Expect = 3e-94
Identities = 176/327 (53%), Positives = 227/327 (69%), Gaps = 2/327 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
+LGF S D SLF G++ VL+YVDDI++T V L+Q L+ +F LK GD
Sbjct: 1105 DLGFQGSKGDTSLFFYNKGGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGD 1164
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV E +L+Q KY +LL++ NM +C TP+ T KLS EGD+
Sbjct: 1165 LHYFLGIEV-NKVTDEIILTQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGP 1223
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D + YRSVVG LQYLTLTRPDIAF VNK+ QFLH PT +HW A KR+LRYLK + GL
Sbjct: 1224 LDATNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTKLGL 1283
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
+ + ++++ +SDADWAG +DD RSTGG VFLG NLV W A+KQ VSRSSTESEY+
Sbjct: 1284 KLCKSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQATVSRSSTESEYK 1343
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN T +++W+Q++ EL +Q + KLWCDN GA L++NPVFH+RTKH+EVD HF+R
Sbjct: 1344 ALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVR 1403
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPL 975
E++S K +EI +VP DQVAD FTK L
Sbjct: 1404 ERVSQKLLEIDFVPTGDQVADGFTKAL 1430
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 350 bits (899), Expect = 4e-94
Identities = 177/328 (53%), Positives = 226/328 (68%), Gaps = 2/328 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
+LGF S D SLF + VLVYVDDI++ S L+Q L+ +F LK G+
Sbjct: 1111 DLGFKGSKPDTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGE 1170
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV++ VL+Q KY ++LL+K M++C TP+ KLS EG +
Sbjct: 1171 LHYFLGIEVSKVQNG-IVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGP 1229
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D S YRSVVG LQYLTLTRPDIAFSVNK+ QFLH PT +HW A KR+LRYLK + GL
Sbjct: 1230 EDASHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGL 1289
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
+ + ++ GFSDADWAGC+DD RSTGG +FLG NLV WNA+KQ VSRSSTESEY+
Sbjct: 1290 EIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYK 1349
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN T +++W+Q++ EL I+ K+WCDN GA L+ANPVFH+RTKH+EVD HF+R
Sbjct: 1350 AIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVR 1409
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLA 978
E++S K +EI +V DQVAD FTKPL+
Sbjct: 1410 ERVSQKLLEIDFVSTNDQVADGFTKPLS 1437
>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
Length = 1434
Score = 350 bits (897), Expect = 7e-94
Identities = 178/337 (52%), Positives = 234/337 (69%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
+ GF S +D SLF + I+LVYVDDIL+TG + V I L+ +F L+ G
Sbjct: 1025 DYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPMLVSHFISYLRTKFALRDLGP 1084
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVFTD 360
+ YFLGI+ AQ GS L+Q KY+ +LL +T M PTP LS+S+G +D
Sbjct: 1085 LSYFLGIQ-AQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGMSLSD 1143
Query: 361 PSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGLRF 540
PS YR VG LQY+TLTRPDIAF+VNK QF+ P+++HW A KR+LRYLKGT GL F
Sbjct: 1144 PSEYRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHF 1203
Query: 541 SPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYRSA 720
PA+++ L+G+SDADWA C DD RST G+CVFLG NL+ W++ KQ +VS+SS ESEYR
Sbjct: 1204 QPAASMELQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGL 1263
Query: 721 ANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIREK 900
+LT +++W+QS+ +EL + P LWCDN A LAANPVFHSR+KH+E+D+HFIREK
Sbjct: 1264 VSLTAELVWIQSLLQELCLP-TSPPILWCDNQSAAHLAANPVFHSRSKHIELDLHFIREK 1322
Query: 901 ISAKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKL 1011
+ ++++I YVP+ DQ+ADIFTK L T+FC LR KL
Sbjct: 1323 VLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKL 1359
>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
Length = 773
Score = 348 bits (893), Expect = 2e-93
Identities = 177/337 (52%), Positives = 233/337 (69%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
+ GF S +D SLF + I+LVYVDDIL+TG + V I L+ +F L+ G
Sbjct: 372 DYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPTLVSHFISYLRTKFALRDLGP 431
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVFTD 360
+ YFLGI+ AQ GS L+Q KY+ +LL +T M PTP LS+S+G +D
Sbjct: 432 LSYFLGIQ-AQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGVSLSD 490
Query: 361 PSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGLRF 540
PS YR VG LQY+TLTRPDIAF+VNK QF+ P+++HW A KR+LRYLKGT GL F
Sbjct: 491 PSEYRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHF 550
Query: 541 SPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYRSA 720
PA+++ +G+SDADWA C DD RST G+CVFLG NL+ W++ KQ +VS+SS ESEYR
Sbjct: 551 QPAASMEXQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGL 610
Query: 721 ANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIREK 900
+LT +++W+QS+ +EL + P LWCDN A LAANPVFHSR+KH+E+D+HFIREK
Sbjct: 611 VSLTAELVWIQSLLQELCLP-TSPPILWCDNQSAAHLAANPVFHSRSKHIELDLHFIREK 669
Query: 901 ISAKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKL 1011
+ ++++I YVP+ DQ+ADIFTK L T+FC LR KL
Sbjct: 670 VLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKL 706
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 348 bits (892), Expect = 3e-93
Identities = 175/327 (53%), Positives = 228/327 (69%), Gaps = 2/327 (0%)
Frame = +1
Query: 4 LGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGDV 183
LGF S +D SLF G++ VLVYVDDI++ V L++ LQ F LK GD+
Sbjct: 915 LGFQGSKADTSLFFYNKGGLIIFVLVYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDL 974
Query: 184 KYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF--T 357
YFLGIEV A S VL+Q+KYV +LL++ M +C TP+ T KL+ EGD+
Sbjct: 975 HYFLGIEV-NKASSGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPN 1033
Query: 358 DPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGLR 537
D S YRSVVG LQYLTLTRPDI F VNK+ QFLH PT +HW A KR+LRYLK + GL+
Sbjct: 1034 DASNYRSVVGALQYLTLTRPDIYFPVNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLK 1093
Query: 538 FSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYRS 717
S + ++++ G+SDADWAG +DD RSTGG VFLG NLV WNAKKQ V RSSTESEY++
Sbjct: 1094 ISKSKSMLVSGYSDADWAGNIDDRRSTGGFAVFLGDNLVSWNAKKQATVPRSSTESEYKA 1153
Query: 718 AANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIRE 897
AN T +++W+Q++ +EL + + +LWCDN GA L++NPVFH+RTKH+EVD HF+RE
Sbjct: 1154 LANATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRE 1213
Query: 898 KISAKQIEIGYVPAVDQVADIFTKPLA 978
++ K +E+ ++P DQVAD FTK L+
Sbjct: 1214 RMQRKLLEVEFIPTGDQVADGFTKALS 1240
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 347 bits (890), Expect = 5e-93
Identities = 172/328 (52%), Positives = 227/328 (69%), Gaps = 2/328 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
ELGF S +D SLF G+L VLVYVDDI++ + L++ L +F LK GD
Sbjct: 1103 ELGFEASKADTSLFFLNKGGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGD 1162
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV + + +L+Q+KY ++LL++ NM C TP+ KL+ EG
Sbjct: 1163 LHYFLGIEVTKVSNG-VILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGP 1221
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D YRS+VG LQYLTLTRPDIA+SVNK+ QFLH PT HW A KR+LRYL + GL
Sbjct: 1222 NDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGL 1281
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
+++ ++ G+SDADWAG +DD +STGG VFLG NLV W+A+KQ VSRSSTE+EY+
Sbjct: 1282 HIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYK 1341
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN T ++IW+Q++ KELGI+ K+WCDN GA L+ANPVFH+RTKH+EVD HF+R
Sbjct: 1342 AVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVR 1401
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLA 978
E++S K +EI +VP+ DQVAD FTK L+
Sbjct: 1402 ERVSQKLLEIDFVPSGDQVADGFTKALS 1429
>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1180
Score = 347 bits (889), Expect = 6e-93
Identities = 171/329 (51%), Positives = 229/329 (69%), Gaps = 2/329 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
+LGF S +D SLF +G+ VL+YVDDI++ VL L+Q LQ +F LK GD
Sbjct: 732 QLGFQGSKADTSLFFYNKQGLTIFVLIYVDDIIVASSRQDAVLTLLQDLQKEFALKDLGD 791
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV + + +L+Q+KY ++LL++ M++C + T KL+ EGD+
Sbjct: 792 LHYFLGIEVNKISNG-IILTQEKYANDLLKRVGMIDCKPVSASLSTSEKLTLHEGDLLGL 850
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D S YRSVVG LQYLTLTRPDIAF VNK+ QFLH PT +HW KR+LRYLK + GL
Sbjct: 851 NDASNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTIHWATVKRILRYLKQCTKLGL 910
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
+ S + ++++ G+SD DWAG VDD RST G VFLG NLV WNA+KQ VSRSSTESEY+
Sbjct: 911 KISKSKSMLVSGYSDTDWAGNVDDRRSTRGFAVFLGDNLVSWNARKQATVSRSSTESEYK 970
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
AN T +++W+Q++ ELG+ + +LWCDN GA L++NPVFH+RTKH+EVD HF+R
Sbjct: 971 VLANATAEIMWIQTLLAELGVSSPLMARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVR 1030
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLAE 981
E++ + +E+ +VP DQVAD FTK L+E
Sbjct: 1031 ERVQRRLLEVDFVPTGDQVADGFTKALSE 1059
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 346 bits (888), Expect = 8e-93
Identities = 173/328 (52%), Positives = 226/328 (68%), Gaps = 2/328 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
ELGF S +D SLF G++ VLVYVDDI+I + L++ L +F LK GD
Sbjct: 1094 ELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGD 1153
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV + VL+Q+KY ++LL++ NM C TP+ KL+ EG
Sbjct: 1154 LHYFLGIEVTKVPNG-IVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGP 1212
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D + YRS+VG LQYLTLTRPDIA+SVNK+ QFLH PT HW A KR+LRYL + GL
Sbjct: 1213 NDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGL 1272
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
+++ ++ G+SDADWAG VDD +STGG VFLG NLV W+A+KQ VSRSSTE+EY+
Sbjct: 1273 NIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYK 1332
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN T ++IW+Q++ +ELGI K+WCDN GA L+ANPVFH+RTKH+EVD HF+R
Sbjct: 1333 AVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVR 1392
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLA 978
E++S K +EI +VP+ DQVAD FTK L+
Sbjct: 1393 ERVSQKLLEIDFVPSGDQVADGFTKALS 1420
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 346 bits (888), Expect = 8e-93
Identities = 173/341 (50%), Positives = 235/341 (68%), Gaps = 2/341 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
ELGF S SD SLF + V +LVYVDDI++ S L++ L +F LK G
Sbjct: 1088 ELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDIIVASSSIDATNALLKNLNQEFALKDLGR 1147
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV + + VL+Q+KY ++L++ NM +C + TP+ KLS EG+ F
Sbjct: 1148 LHYFLGIEVKE-VNNGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPFGP 1206
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D + YRS+VG LQYLTLTRPD++FSVNK+ Q+LH PT HW A KR+LRYLK T GL
Sbjct: 1207 EDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPTTKHWAAAKRILRYLKHTVKLGL 1266
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
+ S +++L++ FSDADWAGC+DD STGG VF+G NLV W+A+KQ VSRSSTE+EY+
Sbjct: 1267 KISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYK 1326
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN+T +++W+Q++ ELGIQ I K+WCDN GA + ANPVFH+RTKH+EVD HF+R
Sbjct: 1327 ALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVR 1386
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKLKL 1017
E+++ K +++ Y+ DQVAD FTK L+ + R+ L L
Sbjct: 1387 ERVARKFLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNL 1427
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 346 bits (887), Expect = 1e-92
Identities = 175/349 (50%), Positives = 235/349 (67%), Gaps = 2/349 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
+LGF S +D SLF + +L+YVDDI++ V L+Q LQ +F LK GD
Sbjct: 1089 DLGFKGSKADTSLFFYNKGSLTIFLLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDLGD 1148
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV + G ++SQ+KY +LL++ NM +C S TP+ KL +G +
Sbjct: 1149 LHYFLGIEVTKIPGG-ILMSQEKYASDLLKRVNMSDCKSVATPLSASEKLIAGKGTILGP 1207
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D + YRS+VG LQYLTLTR DIAFSVNK+ QFLH PT HW A KR+LRY+K +G GL
Sbjct: 1208 NDATQYRSIVGALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGL 1267
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
R +S++++ G+SDADWAGC+DD RSTGG V+LG NLV WNAKKQ VSRSSTE+EY+
Sbjct: 1268 RICKSSSMIVSGYSDADWAGCLDDRRSTGGFAVYLGDNLVSWNAKKQATVSRSSTEAEYK 1327
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN T +++W+Q++ +EL I + +LWCDN GA L+ NPVFH+RTKH+EVD HF+R
Sbjct: 1328 ALANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKYLSFNPVFHARTKHIEVDYHFVR 1387
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKLKLCKDMEEHG 1041
E+++ K +++ YV DQVAD FTK L + + L L K + E G
Sbjct: 1388 ERVARKLLQVDYVSTNDQVADGFTKALPVKQLENFKYNLNLGKVVIEGG 1436
>gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 352
Score = 346 bits (887), Expect = 1e-92
Identities = 175/349 (50%), Positives = 235/349 (67%), Gaps = 2/349 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
+LGF S +D SLF + +L+YVDDI++ V L+Q LQ +F LK GD
Sbjct: 4 DLGFKGSKADTSLFFYNKGSLTIFLLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDLGD 63
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV + G ++SQ+KY +LL++ NM +C S TP+ KL +G +
Sbjct: 64 LHYFLGIEVTKIPGG-ILMSQEKYASDLLKRVNMSDCKSVATPLSASEKLIAGKGTILGP 122
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D + YRS+VG LQYLTLTR DIAFSVNK+ QFLH PT HW A KR+LRY+K +G GL
Sbjct: 123 NDATQYRSIVGALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGL 182
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
R +S++++ G+SDADWAGC+DD RSTGG V+LG NLV WNAKKQ VSRSSTE+EY+
Sbjct: 183 RICKSSSMIVSGYSDADWAGCLDDRRSTGGFAVYLGDNLVSWNAKKQATVSRSSTEAEYK 242
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN T +++W+Q++ +EL I + +LWCDN GA L+ NPVFH+RTKH+EVD HF+R
Sbjct: 243 ALANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKYLSFNPVFHARTKHIEVDYHFVR 302
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKLKLCKDMEEHG 1041
E+++ K +++ YV DQVAD FTK L + + L L K + E G
Sbjct: 303 ERVARKLLQVDYVSTNDQVADGFTKALPVKQLENFKYNLNLGKVVIEGG 351
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 343 bits (881), Expect = 5e-92
Identities = 171/337 (50%), Positives = 226/337 (67%)
Frame = +1
Query: 7 GFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGDVK 186
GF + SD SLF R +T VLVYVDDIL+ G A + LI L +F LK G+V
Sbjct: 1105 GFVSAKSDQSLFLRFTPNHITYVLVYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVH 1164
Query: 187 YFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVFTDPS 366
YFLGI+V+ + + LSQ KY+ +LLQKT M+ C TP+ T KL +GD D
Sbjct: 1165 YFLGIQVSHT-NNGLHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGDPVEDLH 1223
Query: 367 LYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGLRFSP 546
YRS VG LQY+T+TRP+++FSVNK+ QF+ PT HWK KR+LRYL+GT GL
Sbjct: 1224 GYRSTVGALQYVTITRPELSFSVNKVCQFMQNPTEEHWKVVKRILRYLQGTLQHGLHLKK 1283
Query: 547 ASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYRSAAN 726
+S L L GF DADWA +DD RST GHCVFLG NL+ W +KKQ +VSRSS E EYRS A
Sbjct: 1284 SSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPNLISWQSKKQHIVSRSSIEIEYRSLAG 1343
Query: 727 LTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIREKIS 906
L ++ WL+S+ EL + L P +WCDN V L+ANPV H+RTKH+E+D++F+REK+
Sbjct: 1344 LVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVLLSANPVLHARTKHIELDLYFVREKVI 1403
Query: 907 AKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKLKL 1017
K++E+ +VP+ DQ+AD+ TK ++ T+F R KL++
Sbjct: 1404 RKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHKLRI 1440
>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|31433472|gb|AAP54977.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1031
Score = 343 bits (880), Expect = 7e-92
Identities = 172/341 (50%), Positives = 233/341 (68%), Gaps = 2/341 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
ELGF S SD SLF + V +LVYVDDI++ S L++ L +F LK G
Sbjct: 688 ELGFKSSKSDTSLFFYSKGDVTIFMLVYVDDIIVASSSIVATNALLKNLNQEFALKDLGR 747
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV + VL+Q+KY ++L++ NM +C + TP+ KLS EG+
Sbjct: 748 LHYFLGIEVKE-VNDGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPLGP 806
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D + YRS+VG LQYLTLTRPD++FSVNK+ Q+LH T HW A KR+LRYLK T GL
Sbjct: 807 EDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAATTKHWVAAKRILRYLKHTVKLGL 866
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
+ S +++L++ FSDADWAGC+DD RSTGG VF+G NLV W+A+KQ VSRSSTE+EY+
Sbjct: 867 KISKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYK 926
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN T +++W+Q++ ELGIQ+ I K+WCDN GA + ANPVFH+RTKH+EVD HF+R
Sbjct: 927 ALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVR 986
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKLKL 1017
E+++ K +++ Y+ DQVAD FTK L+ + R+ L L
Sbjct: 987 ERVARKLLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNL 1027
>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 342 bits (878), Expect = 1e-91
Identities = 172/341 (50%), Positives = 225/341 (65%), Gaps = 2/341 (0%)
Frame = +1
Query: 1 ELGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGD 180
ELGF S +D SLF G +LVYVDDI++ S V L++ L+ F LK GD
Sbjct: 592 ELGFISSKADTSLFFYNKGGCTIFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGD 651
Query: 181 VKYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVF-- 354
+ YFLGIEV + VLSQ Y ++L++ M C TP+ T KLS +GD
Sbjct: 652 LHYFLGIEV-KKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQ 710
Query: 355 TDPSLYRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGL 534
D S YRS+VG LQYLTLTR D++F VNK+ QFLH+PT +HW A KR+LRY+KGT FGL
Sbjct: 711 NDASHYRSIVGALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGL 770
Query: 535 RFSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYR 714
RF + ++++ FSDADWAGC DD RSTGG VFLG NL+ W+A+KQ VSRSSTE+EY+
Sbjct: 771 RFGKSDSMLISAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRSSTEAEYK 830
Query: 715 SAANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIR 894
+ AN TT+V W++ + EL I + +LWCDN GA L+ANPVFH+RTKH+E+D HF+R
Sbjct: 831 ALANATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHARTKHIEIDYHFVR 890
Query: 895 EKISAKQIEIGYVPAVDQVADIFTKPLAETRFCFLRDKLKL 1017
E+++ K ++I ++ DQ+AD FTK L R L L
Sbjct: 891 EQVAKKLLDIQFISTTDQLADGFTKSLPAPSLAQYRHNLNL 931
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 342 bits (878), Expect = 1e-91
Identities = 172/327 (52%), Positives = 219/327 (66%), Gaps = 2/327 (0%)
Frame = +1
Query: 4 LGFHRSTSDFSLFHRTVRGVLTIVLVYVDDILITGDSHAKVLCLIQLLQDQFKLKTFGDV 183
LGF S +D SLF V VLVYVDDI++ +H L+ L +F LK GD+
Sbjct: 972 LGFQASKADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDL 1031
Query: 184 KYFLGIEVAQSAGSEFVLSQKKYVHELLQKTNMLECHSCPTPMVTVPKLSKSEGDVFTDP 363
YFLGIEV +L+Q KY +LL+K M +C TP+ T KLS EG +
Sbjct: 1032 NYFLGIEV-NKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEK 1090
Query: 364 SL--YRSVVGTLQYLTLTRPDIAFSVNKLSQFLHTPTNLHWKACKRLLRYLKGTSGFGLR 537
+ YRS+VG LQYLTLTRPDIAFSVNK+ QFLH PT LHW A KR+LRY+K + GL
Sbjct: 1091 DITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLH 1150
Query: 538 FSPASALVLEGFSDADWAGCVDDMRSTGGHCVFLGGNLVVWNAKKQDVVSRSSTESEYRS 717
+ + ++ FSDADWAG VDD +STGG VFLG NLV W+A+KQ VSRSSTESEY++
Sbjct: 1151 IHRSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKA 1210
Query: 718 AANLTTDVIWLQSVFKELGIQLLHIPKLWCDNSGAVALAANPVFHSRTKHVEVDIHFIRE 897
AN T ++IW+Q + E+ I+ KLWCDN GA L+ANP+FH+RTKH+EVD HF+R+
Sbjct: 1211 LANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFVRD 1270
Query: 898 KISAKQIEIGYVPAVDQVADIFTKPLA 978
+++ K ++I YVP DQVAD FTKPL+
Sbjct: 1271 RVAKKLLDIEYVPTGDQVADGFTKPLS 1297