BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00032391
         (1142 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   437   e-120
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   340   7e-91
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              340   7e-91
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   340   9e-91
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   340   9e-91
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   340   9e-91
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   340   9e-91
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   328   3e-87
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   328   3e-87
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   328   3e-87
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   318   3e-84
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   313   7e-83
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   313   9e-83
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   310   1e-81
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   307   6e-81
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   303   9e-80
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   297   6e-78
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   296   8e-78
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   295   2e-77
ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phas...   294   4e-77

>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  437 bits (1125), Expect = e-120
 Identities = 236/366 (64%), Positives = 281/366 (76%), Gaps = 7/366 (1%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCLKEDITFQKPLDRQ---LAPASSS-HDGSEDVDPNQHVDDIELQL 232
            VLIQDQRN+SRPLL LK+D TFQ+  DR+     PASSS ++G++ +DP+Q+ +D++LQL
Sbjct: 57   VLIQDQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQL 116

Query: 233  LRRPELWYLLASLRKKETTFPLTAV-SISSKSEESTGLEADHVVTLAREAFSASKKAMWI 409
            LRRPELWYL +SL+KKE  FP T   S+ S +E  TG EA+HV+ LAREAFSA K+A  I
Sbjct: 117  LRRPELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASI 176

Query: 410  AKDAGISGINVDDSSSTRGLASDPV--IVRSTRLLERQAKRRRVPKPKVEFLETNHHRKP 583
            A+DA +     D+SSSTR L   PV  IVRS R LERQAKRR  PKP++E  E NH RK 
Sbjct: 177  AEDARL----YDNSSSTRSLVGSPVQRIVRSKRRLERQAKRR-APKPQLEDQEMNHRRKL 231

Query: 584  GSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSC 763
              H+K    +DPNDPLRLFL GP              I KIQ+LMKLQ V++RL  QFS 
Sbjct: 232  EPHKKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQFSR 291

Query: 764  EPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQE 943
            EPT++EWAAAVGIS Q+L+ Q++ GN SR+KLIYANFR+VV+IAKQYQGRGLNLQDLLQ 
Sbjct: 292  EPTLVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLLQL 351

Query: 944  GSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAK 1123
            GS+GLMKSVEKFKP  GCRFATYAYWWIRQ IRK++FQHSRTIRLPEN+Y LLSKVYEAK
Sbjct: 352  GSMGLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAK 411

Query: 1124 KTCFQQ 1141
            KTC +Q
Sbjct: 412  KTCIKQ 417


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  340 bits (872), Expect = 7e-91
 Identities = 191/369 (51%), Positives = 252/369 (68%), Gaps = 10/369 (2%)
 Frame = +2

Query: 65   VLIQDQRNDSRPL-LCLKEDITFQKPLDRQLAPASSSHDGSEDVDPNQHVDDIELQLLRR 241
            VL+Q+QR++ RP    LK++ TFQ  L+++      S D     D NQ++ + E QLL +
Sbjct: 64   VLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQ 123

Query: 242  PELWYLLASLRKKETTFPLTAV--SISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 415
            P LWY L S +  E +   +++  SI++  E S  ++   V+ LA++A SASK+A+ + +
Sbjct: 124  PGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYE 183

Query: 416  DAGISGINVDDSSS-TRGLASDPVI------VRSTRLLERQAKRRRVPKPKVEFLETNHH 574
            +A + G +++DS S + G  S P +      VRSTRLLER++K+RR   PKV   E +  
Sbjct: 184  NAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR--NPKVAVHENHGS 241

Query: 575  RKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQ 754
            R+    RK++  +DP DPLRLFL GP              I++IQ+LM+L+ VK RL + 
Sbjct: 242  RRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSH 301

Query: 755  FSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDL 934
               EPT++EWA AVG+SCQ L+SQ+H GN SRQKLIYAN RMVVHIAKQYQGRGLNLQDL
Sbjct: 302  LKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDL 361

Query: 935  LQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVY 1114
            LQEGS+GLM SVEKFKP AGCRFA+YAYWWIRQ +RKAIFQHSRTIRLPEN+Y LL KV 
Sbjct: 362  LQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVK 421

Query: 1115 EAKKTCFQQ 1141
            EAK+   Q+
Sbjct: 422  EAKRLFIQE 430


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  340 bits (872), Expect = 7e-91
 Identities = 191/369 (51%), Positives = 252/369 (68%), Gaps = 10/369 (2%)
 Frame = +2

Query: 65   VLIQDQRNDSRPL-LCLKEDITFQKPLDRQLAPASSSHDGSEDVDPNQHVDDIELQLLRR 241
            VL+Q+QR++ RP    LK++ TFQ  L+++      S D     D NQ++ + E QLL +
Sbjct: 53   VLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQ 112

Query: 242  PELWYLLASLRKKETTFPLTAV--SISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 415
            P LWY L S +  E +   +++  SI++  E S  ++   V+ LA++A SASK+A+ + +
Sbjct: 113  PGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYE 172

Query: 416  DAGISGINVDDSSS-TRGLASDPVI------VRSTRLLERQAKRRRVPKPKVEFLETNHH 574
            +A + G +++DS S + G  S P +      VRSTRLLER++K+RR   PKV   E +  
Sbjct: 173  NAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR--NPKVAVHENHGS 230

Query: 575  RKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQ 754
            R+    RK++  +DP DPLRLFL GP              I++IQ+LM+L+ VK RL + 
Sbjct: 231  RRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSH 290

Query: 755  FSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDL 934
               EPT++EWA AVG+SCQ L+SQ+H GN SRQKLIYAN RMVVHIAKQYQGRGLNLQDL
Sbjct: 291  LKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDL 350

Query: 935  LQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVY 1114
            LQEGS+GLM SVEKFKP AGCRFA+YAYWWIRQ +RKAIFQHSRTIRLPEN+Y LL KV 
Sbjct: 351  LQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVK 410

Query: 1115 EAKKTCFQQ 1141
            EAK+   Q+
Sbjct: 411  EAKRLFIQE 419


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  340 bits (871), Expect = 9e-91
 Identities = 189/365 (51%), Positives = 246/365 (67%), Gaps = 6/365 (1%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLAPASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ RPLL + KED T Q   D R +   +   +     D +Q V D+E Q L 
Sbjct: 55   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 114

Query: 239  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 415
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 115  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 174

Query: 416  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 586
            +  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK  
Sbjct: 175  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKAS 234

Query: 587  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCE 766
              +KL   FD NDPLRLFL GP              I +IQDL++L+  K++L +QF  E
Sbjct: 235  VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 294

Query: 767  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 946
            PT++EWA A+G+SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 295  PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 354

Query: 947  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 1126
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 355  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 414

Query: 1127 TCFQQ 1141
               Q+
Sbjct: 415  LYIQE 419


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  340 bits (871), Expect = 9e-91
 Identities = 189/365 (51%), Positives = 246/365 (67%), Gaps = 6/365 (1%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLAPASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ RPLL + KED T Q   D R +   +   +     D +Q V D+E Q L 
Sbjct: 63   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122

Query: 239  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 415
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 123  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182

Query: 416  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 586
            +  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK  
Sbjct: 183  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKAS 242

Query: 587  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCE 766
              +KL   FD NDPLRLFL GP              I +IQDL++L+  K++L +QF  E
Sbjct: 243  VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 302

Query: 767  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 946
            PT++EWA A+G+SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 303  PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 362

Query: 947  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 1126
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 363  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 422

Query: 1127 TCFQQ 1141
               Q+
Sbjct: 423  LYIQE 427


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  340 bits (871), Expect = 9e-91
 Identities = 189/365 (51%), Positives = 246/365 (67%), Gaps = 6/365 (1%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLAPASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ RPLL + KED T Q   D R +   +   +     D +Q V D+E Q L 
Sbjct: 64   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 123

Query: 239  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 415
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 124  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 183

Query: 416  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 586
            +  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK  
Sbjct: 184  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKAS 243

Query: 587  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCE 766
              +KL   FD NDPLRLFL GP              I +IQDL++L+  K++L +QF  E
Sbjct: 244  VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 303

Query: 767  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 946
            PT++EWA A+G+SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 304  PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 363

Query: 947  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 1126
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 364  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 423

Query: 1127 TCFQQ 1141
               Q+
Sbjct: 424  LYIQE 428


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  340 bits (871), Expect = 9e-91
 Identities = 192/367 (52%), Positives = 245/367 (66%), Gaps = 8/367 (2%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLL-CLKEDITFQKPLDR-QLAPASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ +PLL  LKED T +  LDR Q+   +S H+  +  D    V+  + QLL 
Sbjct: 60   VLLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLN 119

Query: 239  RPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 418
               L    +     + + PLT  S+++ S +   +E  +VV LA++A SAS++A  +A+D
Sbjct: 120  HDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAED 179

Query: 419  AGISGINVDD---SSSTRGLASDPVIVRSTRLLERQAKR---RRVPKPKVEFLETNHHRK 580
            +   G + DD   +S    +  +   VRSTR+LER+ KR   R+VPK KV   E+N    
Sbjct: 180  SQSMGADFDDLGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTG 239

Query: 581  PGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFS 760
                +K+   F+PNDPLRLFL GP              I ++QDL KL+ VK+RL  QF 
Sbjct: 240  SDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFG 299

Query: 761  CEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQ 940
             EPT++EWA AVGISCQ LKSQ+  G  SR+KLIYAN RMVVHIAKQYQGRGL LQDL+Q
Sbjct: 300  REPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQ 359

Query: 941  EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEA 1120
            EGS+GLMKSVEKFKPQAGCRFATYAYWWIRQ +RKAIFQHSRTIRLPEN+Y LL KV EA
Sbjct: 360  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEA 419

Query: 1121 KKTCFQQ 1141
            KK+C Q+
Sbjct: 420  KKSCIQE 426


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  328 bits (840), Expect = 3e-87
 Identities = 186/365 (50%), Positives = 241/365 (66%), Gaps = 6/365 (1%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLAPASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ RPLL + KED T Q   D R +   +   +     D +Q V D+E Q L 
Sbjct: 55   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 114

Query: 239  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 415
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 115  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 174

Query: 416  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 586
            +  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK  
Sbjct: 175  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 234

Query: 587  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCE 766
              +KL   FDPNDPLRLFL GP              I +IQDL++L+  K++L +QF  E
Sbjct: 235  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 294

Query: 767  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 946
            PT++       +SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 295  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 354

Query: 947  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 1126
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 355  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 414

Query: 1127 TCFQQ 1141
               Q+
Sbjct: 415  LYIQE 419


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  328 bits (840), Expect = 3e-87
 Identities = 186/365 (50%), Positives = 241/365 (66%), Gaps = 6/365 (1%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLAPASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ RPLL + KED T Q   D R +   +   +     D +Q V D+E Q L 
Sbjct: 63   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122

Query: 239  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 415
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 123  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182

Query: 416  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 586
            +  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK  
Sbjct: 183  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 242

Query: 587  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCE 766
              +KL   FDPNDPLRLFL GP              I +IQDL++L+  K++L +QF  E
Sbjct: 243  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 302

Query: 767  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 946
            PT++       +SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 303  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 362

Query: 947  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 1126
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 363  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 422

Query: 1127 TCFQQ 1141
               Q+
Sbjct: 423  LYIQE 427


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  328 bits (840), Expect = 3e-87
 Identities = 186/365 (50%), Positives = 241/365 (66%), Gaps = 6/365 (1%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLAPASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ RPLL + KED T Q   D R +   +   +     D +Q V D+E Q L 
Sbjct: 52   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 111

Query: 239  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 415
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 112  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 171

Query: 416  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 586
            +  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK  
Sbjct: 172  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 231

Query: 587  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCE 766
              +KL   FDPNDPLRLFL GP              I +IQDL++L+  K++L +QF  E
Sbjct: 232  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 291

Query: 767  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 946
            PT++       +SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 292  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 351

Query: 947  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 1126
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 352  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 411

Query: 1127 TCFQQ 1141
               Q+
Sbjct: 412  LYIQE 416


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  318 bits (814), Expect = 3e-84
 Identities = 183/373 (49%), Positives = 250/373 (67%), Gaps = 14/373 (3%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL---KEDITFQKPLDRQLAPASSSHDGSEDVDPNQHVDDIELQLL 235
            VL+Q+QR+D RPL  L   KED  +    D+Q     +S +  E+   N      E +LL
Sbjct: 59   VLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLN-EENASNNFGQLGFEKKLL 117

Query: 236  RRPELWYLLASLRKKETTFPLTAV-SISSKSEESTGLEADHVVTLAREAFSASKKAMWIA 412
            + P+L  LL+ L  +E     + + S+++ ++E   +E  ++V LA++A SASK+A  ++
Sbjct: 118  QWPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLS 177

Query: 413  KDAGISGINVDDS-SSTRGLAS---------DPVIVRSTRLLERQAKRRRVPKPKVEFLE 562
            +D  +   ++DDS S++ G A+         + V VRSTR LERQ+KRRRV +PKV   E
Sbjct: 178  EDLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRV-QPKVTIRE 233

Query: 563  TNHHRKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTR 742
            T   R+    RKL   FDPNDPLRLFL GP                ++Q+LM+L+ VK++
Sbjct: 234  TYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSK 293

Query: 743  LHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLN 922
            L +QF  EPT++EWA A+G+ C +L++++H GN SR KLIYAN RMVVHIAKQYQ RGL+
Sbjct: 294  LQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLS 353

Query: 923  LQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLL 1102
            LQDLLQEGS+GLMKSVE+FKPQ GCRFATYAYWWIRQ IRK+I QHSRT+RLPEN++ LL
Sbjct: 354  LQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLL 413

Query: 1103 SKVYEAKKTCFQQ 1141
            SKV +AKK+  ++
Sbjct: 414  SKVLDAKKSYIRE 426


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  313 bits (803), Expect = 7e-83
 Identities = 182/361 (50%), Positives = 224/361 (62%), Gaps = 2/361 (0%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLDRQLAP-ASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ RPL  + KED   Q  LDR+     +S H+G +  + +Q V++ E QL  
Sbjct: 55   VLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHH 114

Query: 239  RPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 418
             P  W L   L   E T                     +V+ LA+ A SASK A ++A D
Sbjct: 115  WPAYWNLTDKLIDVEPT---------------------NVINLAKRALSASKHAAFLA-D 152

Query: 419  AGISGINVDDSSSTRGLASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRK 598
                  N+  +SS+     +  IVRS R L RQ+  RR PK K    ET   +     ++
Sbjct: 153  NNTDLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQKR 212

Query: 599  LDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCEPTIL 778
            L   FDPNDPLRLFL GP              I +IQDLM L+ VK RL +QF  EPT++
Sbjct: 213  LSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLV 272

Query: 779  EWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGL 958
            EWA AVG+SC  LK Q+H GN SR+KLI AN RMVVHIAK+YQ RGL LQDLLQEG++GL
Sbjct: 273  EWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGL 332

Query: 959  MKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQ 1138
            MKS+EKFKPQAGCRFATYAYWWIRQ I KAIFQHSRTIRLPEN+YGLL KV EAK++  Q
Sbjct: 333  MKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQ 392

Query: 1139 Q 1141
            +
Sbjct: 393  E 393


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  313 bits (802), Expect = 9e-83
 Identities = 183/367 (49%), Positives = 235/367 (64%), Gaps = 11/367 (2%)
 Frame = +2

Query: 74   QDQRNDSRPLLCLKEDITFQKPLDRQLAPASSSH-DGSEDVDPNQHVDDIELQLLRRPEL 250
            + Q  +   L  +KE+ T    +DR+L  A+SS  + ++ VD  Q+++ +++QLLR P  
Sbjct: 59   EQQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGP 118

Query: 251  WYLLAS--LRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDAG 424
             Y      L+ K    P     + SK ++    E   VV LAR+A  AS++A  +A+D+ 
Sbjct: 119  SYSFPPYYLKGKGPLSP-NKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAEDSK 177

Query: 425  ISGINVDDSSSTRGLASDPV--------IVRSTRLLERQAKRRRVPKPKVEFLETNHHRK 580
            +    +DDS+    L+++ V         VRSTR  ERQ+++R  PKP  +  ETN   +
Sbjct: 178  L----LDDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGR 233

Query: 581  PGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFS 760
            P   RK++   D NDPLR+FL GP              I+KIQ  MKLQ VK +L  QF+
Sbjct: 234  PDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFA 293

Query: 761  CEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQ 940
             EPT +EWA A GI+ + LKSQ+  G  SR+KLI AN RMVVHIAKQYQGRGLNLQDLLQ
Sbjct: 294  HEPTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQ 353

Query: 941  EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEA 1120
            EGS+GLMKSVEKFKPQAGCRF TYAYWWIRQ +RKAIFQHSRTIRLPEN+Y LLSKV +A
Sbjct: 354  EGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDA 413

Query: 1121 KKTCFQQ 1141
            KK C QQ
Sbjct: 414  KKECIQQ 420


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  310 bits (793), Expect = 1e-81
 Identities = 183/366 (50%), Positives = 235/366 (64%), Gaps = 11/366 (3%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLD-RQLAPASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ RPLL + KED TFQ  +D +Q+ P +S  +G           D+  QL+ 
Sbjct: 62   VLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGI--------CSDVLDQLIL 113

Query: 239  RPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 418
               L            ++ LT  SI++ ++E   +E  +V+ LAR+A SASK+A  +A+ 
Sbjct: 114  HSNL------------SWSLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQK 161

Query: 419  AGISGINVDDSSSTRGLASDPV---------IVRSTRLLERQAKRRRVPKPKVEFLETNH 571
                  N+DD+ ST GL    +          VRSTR LERQ+K RRV K K  F E   
Sbjct: 162  CA----NLDDTVST-GLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYS 216

Query: 572  HRKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHA 751
             R+ G  +K++  FDP DPLRLFL GP              I ++QDLM L+ VK +   
Sbjct: 217  SRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKL 276

Query: 752  QFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQD 931
            QF  +PT++EWA AVG+S   ++SQ+H GN SR+KLI AN RMVVHIAKQYQGRGL+LQD
Sbjct: 277  QFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQD 336

Query: 932  LLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKV 1111
            LLQEGS+GLMKS+EKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPEN+Y  L KV
Sbjct: 337  LLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKV 396

Query: 1112 YEAKKT 1129
             EAK++
Sbjct: 397  SEAKRS 402


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  307 bits (786), Expect = 6e-81
 Identities = 181/356 (50%), Positives = 230/356 (64%), Gaps = 12/356 (3%)
 Frame = +2

Query: 110  LKEDITFQKPLDRQLAPASSSH-DGSEDVDPNQHVDDIELQLLRRPELWYLLAS--LRKK 280
            +KE+ T    +DR+L  A+SS  + ++ VD  Q+++ +++QLL  P   Y      L+ K
Sbjct: 71   VKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYSFPPYYLKGK 130

Query: 281  ETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSST 460
                P     + SK ++    E   VV LAR+A  ASK+A  +A+D+ +    +DDS   
Sbjct: 131  GPLSP-NKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDSKL----LDDSHFP 185

Query: 461  RGLASDPV--------IVRSTRLLERQAKRRRVPKPKVEFLETNHHR-KPGSHRKLDSRF 613
              L++  V         VRSTR +ERQ+++R  PKP  E  ETN+   +P   RK++   
Sbjct: 186  NFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESI 245

Query: 614  DPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAA 793
            D NDPLR+FL GP              I+KIQ  MKLQ VK +L  QF+ EPT LEWA A
Sbjct: 246  DLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEA 305

Query: 794  VGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVE 973
             GI+ + LKSQ+  G  SR+KLI AN RMVVHIAKQYQGRGLNLQDLLQEGS+GLMKSVE
Sbjct: 306  AGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVE 365

Query: 974  KFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQ 1141
            KFKPQAGCRF TYAYWWIRQ +RKAIFQHSRTIRLPEN+Y LLSKV +AK+ C +Q
Sbjct: 366  KFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIRQ 421


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  303 bits (776), Expect = 9e-80
 Identities = 172/354 (48%), Positives = 226/354 (63%), Gaps = 2/354 (0%)
 Frame = +2

Query: 68   LIQDQRNDSRPLL-CLKEDITFQKPLDRQLAPASSSHDGSEDVDPNQHVDDIELQLLRRP 244
            L Q+Q ++ RP    LK+D + Q  L+R+L   S   D     D +  + +++ Q +  P
Sbjct: 61   LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 245  ELWYLLASLRKKETTFP-LTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDA 421
             L      ++ +E     +   S ++  E     E ++V+ LA++A SASK+A  +  + 
Sbjct: 121  GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 422  GISGINVDDSSSTRGLASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKL 601
             + G ++D SS    L+ +   VRSTRL +R++K+R+VPK      E ++ R   S RK 
Sbjct: 181  ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240

Query: 602  DSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCEPTILE 781
              +FDPNDPLRLFL GP              I++IQDLM L  VK RL +QF  EPT++E
Sbjct: 241  SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300

Query: 782  WAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLM 961
            WA A+GI+CQ L+SQ+H+   SR+KLI AN RMVVHIAKQYQGRGL+L DLLQ GSLGLM
Sbjct: 301  WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360

Query: 962  KSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAK 1123
            KSVEKFKPQAGCRF +YAYWWIR  I KAIFQHSRTIRLPEN+Y LL KV EAK
Sbjct: 361  KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAK 414


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  297 bits (760), Expect = 6e-78
 Identities = 175/364 (48%), Positives = 231/364 (63%), Gaps = 5/364 (1%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLDR-QLAPASSSHDGSEDVDPNQHVDDIELQLLR 238
            VL+Q+QR++ +PLL + KE+   Q  LDR Q+   ++  D +        +DD    +  
Sbjct: 60   VLLQEQRDEFKPLLHIFKEEKASQATLDRIQIENTTAEEDFN--------IDDFYKLVKD 111

Query: 239  RPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 418
              +L    + + +   T   +A+  ++ +     +E   V+TLA+ A SAS +A  +A+ 
Sbjct: 112  FRQLHVTPSQIGENSPTG--SALESNTTANVHMDVEPSDVLTLAKHALSASLEAASLAET 169

Query: 419  AGISGINVDDSSSTRGLASDPVIVRSTRLLERQAKR---RRVPKPKVEFLETNHHRKPGS 589
            +      +++S+S  GL  +   VRST+LLER+ KR   R +   KV   E +       
Sbjct: 170  SKSISAGLNESTSL-GLGWEEETVRSTQLLERRRKRLKKRNLLNSKVPNYENSSSNSSDL 228

Query: 590  HRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVKTRLHAQFSCEP 769
             RK     +PNDPLRLFL GP              I ++QD+ KL+ VK+RL +QF  EP
Sbjct: 229  RRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQSQFGREP 288

Query: 770  TILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGS 949
            T++EWA AVGISCQ L+SQ+  G  SR+KLIY+N RMVVHIAKQYQGRGL LQDLLQEGS
Sbjct: 289  TLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQDLLQEGS 348

Query: 950  LGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKT 1129
            +GLMKSVEKFKPQAGCRFATYAYWW+RQ IRKAIFQHSRTIRLPEN+Y LL KV EAKK+
Sbjct: 349  MGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLGKVLEAKKS 408

Query: 1130 CFQQ 1141
              Q+
Sbjct: 409  YIQE 412


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
            max]
          Length = 574

 Score =  296 bits (759), Expect = 8e-78
 Identities = 179/375 (47%), Positives = 230/375 (61%), Gaps = 16/375 (4%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLDRQLAPASSSHDGSEDVDPNQHVDDIELQLLRR 241
            VL+Q+QR++ RPLL + KED T Q  L  +       H+ +   + +Q V D    L   
Sbjct: 60   VLLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKHLHYW 119

Query: 242  PELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDA 421
            P L  LLAS +  E +   T   +SS  +  T     + V+LA++A S SK+   + +D 
Sbjct: 120  PHLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVED- 178

Query: 422  GISGINVDDSSSTRGLAS----DPVI-----VRSTRLLERQAKRRRVPKPKVEFLETNHH 574
             +  I  DD S   GLAS    DP I     VRSTRLLER++K+R+VPK KV   ET   
Sbjct: 179  -LKSIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 237

Query: 575  RKPGSHRKL------DSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVK 736
            RK  +H KL      +   D NDPL  FLRGP              I +IQDL++L+ VK
Sbjct: 238  RKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVK 297

Query: 737  TRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRG 916
            T+L +QF  EPT+ EWA  VG++C+ L +Q+  G+ SR+KLI AN RMVVH+AK YQGRG
Sbjct: 298  TKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRG 357

Query: 917  LNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYG 1096
            L+LQDLLQEGS+GLMKSVEKF P  G RF  YA+WWIRQ IRKA+F+HSRTIRLPE ++ 
Sbjct: 358  LSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFI 417

Query: 1097 LLSKVYEAKKTCFQQ 1141
            LL KV EAKK   Q+
Sbjct: 418  LLGKVMEAKKLYIQE 432


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  295 bits (755), Expect = 2e-77
 Identities = 179/375 (47%), Positives = 228/375 (60%), Gaps = 16/375 (4%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLDRQLAPASSSHDGSEDVDPNQHVDDIELQLLRR 241
            VL+ +QR++ RPLL + KED T Q  L  +     + H+ +   + +Q V D    L   
Sbjct: 61   VLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHW 120

Query: 242  PELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDA 421
            P L YLL S +  E     T   +S   E        + V+LA++A S SK+   + +D 
Sbjct: 121  PNLQYLLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVED- 179

Query: 422  GISGINVDDSSSTRGLAS----DPVI-----VRSTRLLERQAKRRRVPKPKVEFLETNHH 574
             +  I  DD S   GLAS    DP I     VRSTRLLER++K+R+VPK KV   ET   
Sbjct: 180  -LKSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 238

Query: 575  RKPGSHRKL------DSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVK 736
            RK  +  KL      +   D +DPLRLFL GP              I +IQDL++L+ VK
Sbjct: 239  RKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVK 298

Query: 737  TRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRG 916
            T L +QF  EPT+ EWA   G++C+ L+SQ+H GN SR+KLI AN RMVVH+AK YQGRG
Sbjct: 299  TNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRG 358

Query: 917  LNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYG 1096
            L+LQDLLQEGS+GLMKSVEKF P AG RF  YA+WWIRQ IRKA+F+HSRTIRLPE ++ 
Sbjct: 359  LSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFI 418

Query: 1097 LLSKVYEAKKTCFQQ 1141
            LL KV EAKK   Q+
Sbjct: 419  LLGKVMEAKKLYIQE 433


>ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phaseolus vulgaris]
            gi|561017549|gb|ESW16353.1| hypothetical protein
            PHAVU_007G149600g [Phaseolus vulgaris]
          Length = 582

 Score =  294 bits (753), Expect = 4e-77
 Identities = 178/375 (47%), Positives = 230/375 (61%), Gaps = 16/375 (4%)
 Frame = +2

Query: 65   VLIQDQRNDSRPLLCL-KEDITFQKPLDRQLAPASSSHDGSEDVDPNQHVDDIELQLLRR 241
            VL+Q+QR++ RPLL + KED T Q  L+ +     + H+ +   + +Q V D    L   
Sbjct: 68   VLLQEQRDEYRPLLHMSKEDKTSQAILNTRQMDMDTVHEENNTGNADQIVLDFRKHLHLW 127

Query: 242  PELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDA 421
            P L  LL S +  E     T   +S  SE  T     + V+LA++A S +K+   + +  
Sbjct: 128  PRLQNLLNSSQTGEIAASSTLQHVSVDSERRTDGVQCNGVSLAKKALSTAKQTSSVVE-- 185

Query: 422  GISGINVDDSSSTRGLAS----DPVI-----VRSTRLLERQAKRRRVPKPKVEFLETNHH 574
            G+  I  DD S   GLAS    DP +     VRSTRLLER+AK+R+V K  V+  ET   
Sbjct: 186  GLKSIKADDDSIPFGLASTGLADPSVGRNKTVRSTRLLERRAKQRKVSKSIVKDDETYLT 245

Query: 575  RKPGSH------RKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXXIMKIQDLMKLQVVK 736
            RK  +       +K++  FD ND LR+FLRGP              I KIQDL+KL+ +K
Sbjct: 246  RKDDAQERIRKEKKINEEFDQNDTLRMFLRGPETKQLLTLEQESELISKIQDLLKLEELK 305

Query: 737  TRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRG 916
            TRL +QF  EPT+ EWA   G++C+ L SQ+  GN SR+KLI AN RMVVH+AK YQGRG
Sbjct: 306  TRLQSQFGREPTMAEWAEGAGLNCRMLHSQLRHGNRSREKLIQANLRMVVHVAKSYQGRG 365

Query: 917  LNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYG 1096
            L+LQDLLQEGS+GLMKSVEKF P AG RF  YA+WWIRQ IRKA+F+HSRTIRLPE +Y 
Sbjct: 366  LSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYI 425

Query: 1097 LLSKVYEAKKTCFQQ 1141
             L K+ EAKK   Q+
Sbjct: 426  QLGKIMEAKKLYIQE 440