BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00021246
         (753 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU30596.1| hypothetical protein MIMGU_mgv1a002773mg [Mimulus...   273   4e-71
ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation spec...   239   6e-61
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr...   214   3e-53
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec...   213   7e-53
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec...   211   2e-52
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr...   211   2e-52
ref|XP_007225677.1| hypothetical protein PRUPE_ppa002814mg [Prun...   208   1e-51
ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Popu...   206   7e-51
ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobr...   204   2e-50
ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268...   204   3e-50
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu...   204   3e-50
ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobr...   202   1e-49
ref|XP_007044908.1| RNA-binding family protein isoform 5, partia...   202   1e-49
ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobr...   202   1e-49
ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobr...   202   1e-49
gb|EXB82464.1| Cleavage and polyadenylation specificity factor s...   191   2e-46
ref|XP_002312652.1| RNA recognition motif-containing family prot...   189   9e-46
ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309...   185   2e-44
ref|XP_002315647.1| RNA recognition motif-containing family prot...   183   5e-44
ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [A...   168   2e-39

>gb|EYU30596.1| hypothetical protein MIMGU_mgv1a002773mg [Mimulus guttatus]
          Length = 639

 Score =  273 bits (699), Expect = 4e-71
 Identities = 139/224 (62%), Positives = 145/224 (64%), Gaps = 6/224 (2%)
 Frame = +2

Query: 2    RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQ--PPYKPGSGPVRGRGGMMNKNMTX 175
            RNP+ND A RGNG NYPSGDA                P   PG+GP+RGRGGM NKNM  
Sbjct: 333  RNPMNDGAGRGNGTNYPSGDAGRNFGRGGGWGRGNQAPNRGPGAGPIRGRGGMGNKNMIG 392

Query: 176  XXXXXXXXXXXXXXX----FHAPPVMMPHQGMMGPGFDLAFMGRGAGYGNFSGPGFQGML 343
                               F  PP MM  QGMMGPGFDLAFMGRG GYG FSGP FQGML
Sbjct: 393  NAPGAGGGGAYGQGLNGPGFGGPPGMMHPQGMMGPGFDLAFMGRGGGYGGFSGPPFQGML 452

Query: 344  PPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAWGGEE 523
            PPF GVNSMGLPGVAPHVNPAFF                   PHSGMWND NMG WGGEE
Sbjct: 453  PPFQGVNSMGLPGVAPHVNPAFFGRGMNPNGMGMMGNPGMVGPHSGMWNDPNMGGWGGEE 512

Query: 524  HGRESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDW 655
            HGRESSYGGEDNASEYGYGE SHDK  RSSAA REKE+ SER++
Sbjct: 513  HGRESSYGGEDNASEYGYGEGSHDKSVRSSAAPREKERTSEREY 556


>ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185-like isoform X1 [Solanum tuberosum]
            gi|565349616|ref|XP_006341787.1| PREDICTED: cleavage and
            polyadenylation specificity factor subunit CG7185-like
            isoform X2 [Solanum tuberosum]
          Length = 648

 Score =  239 bits (611), Expect = 6e-61
 Identities = 129/232 (55%), Positives = 137/232 (59%), Gaps = 11/232 (4%)
 Frame = +2

Query: 2    RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXX--QPPYKPGSGPVRGRGGMMNKNM-- 169
            R P+N+   RG G NY  GDA                P   PG GPVRGRG M +KNM  
Sbjct: 334  RRPMNEGVGRG-GPNYTPGDAGRNFGRGSWGRGGPGMPNRGPGGGPVRGRGAMGSKNMMV 392

Query: 170  ---TXXXXXXXXXXXXXXXXFHAPPVMMPH-QGMMGPGFDLAFMGRGAGYGNFSGPGFQG 337
                                F  PP  + H QGMMGPGFD +FMGRGAGYG FSGP F G
Sbjct: 393  NPGAGNGAGGAFGQGLAGPAFGGPPAGLMHPQGMMGPGFDPSFMGRGAGYGGFSGPAFPG 452

Query: 338  MLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAWGG 517
            M+PPF  VN MGLPGVAPHVNPAFF                   PH GMW DT+ G WGG
Sbjct: 453  MMPPFQAVNPMGLPGVAPHVNPAFFGRGMAANGMGMMSAAGMDGPHPGMWTDTSGGGWGG 512

Query: 518  EEHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            EEHG   RESSYGGEDNASEYGYGE SHDKGARSSA SREKE+ SERDWS N
Sbjct: 513  EEHGRRTRESSYGGEDNASEYGYGEVSHDKGARSSAVSREKERGSERDWSGN 564


>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
            gi|557540375|gb|ESR51419.1| hypothetical protein
            CICLE_v10030915mg [Citrus clementina]
          Length = 658

 Score =  214 bits (545), Expect = 3e-53
 Identities = 119/237 (50%), Positives = 132/237 (55%), Gaps = 16/237 (6%)
 Frame = +2

Query: 2    RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQ--PPYKPGSGPVRGRGGMMNKNM-- 169
            R P+ND   RG   NY SGD              Q  P   PG G +RGRG M  KNM  
Sbjct: 336  RRPMNDGGGRGGNMNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRGRGPMGAKNMMG 395

Query: 170  --------TXXXXXXXXXXXXXXXXFHAPPVMMPH-QGMMGPGFDLAFMGRGAGYGNFSG 322
                                     F  P   M H Q MMG GFD  +MGRG GYG FSG
Sbjct: 396  SSSGAGSGAGPAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGGGYGGFSG 454

Query: 323  PGFQGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNM 502
            PGF GMLP FP VN+MGL GVAPHVNPAFF                   PH GMW D++M
Sbjct: 455  PGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPGMWTDSSM 514

Query: 503  GAWGGEEHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            G W GEEHG   RESSYGG+D AS+YGYGEA+H+KGARS+AASREK++ SERDWS N
Sbjct: 515  GGWVGEEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGN 571


>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185-like isoform X1 [Citrus sinensis]
          Length = 658

 Score =  213 bits (541), Expect = 7e-53
 Identities = 118/237 (49%), Positives = 132/237 (55%), Gaps = 16/237 (6%)
 Frame = +2

Query: 2    RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQ--PPYKPGSGPVRGRGGMMNKNM-- 169
            R P+ND   RG   NY SGD              Q  P   PG G +RGRG M  +NM  
Sbjct: 336  RRPMNDGGGRGGNMNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRGRGPMGARNMIG 395

Query: 170  --------TXXXXXXXXXXXXXXXXFHAPPVMMPH-QGMMGPGFDLAFMGRGAGYGNFSG 322
                                     F  P   M H Q MMG GFD  +MGRG GYG FSG
Sbjct: 396  SSSGAGSGVGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGGGYGGFSG 454

Query: 323  PGFQGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNM 502
            PGF GMLP FP VN+MGL GVAPHVNPAFF                   PH GMW D++M
Sbjct: 455  PGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPGMWTDSSM 514

Query: 503  GAWGGEEHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            G W GEEHG   RESSYGG+D AS+YGYGEA+H+KGARS+AASREK++ SERDWS N
Sbjct: 515  GGWLGEEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGN 571


>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185-like isoform X1 [Citrus sinensis]
          Length = 655

 Score =  211 bits (537), Expect = 2e-52
 Identities = 117/235 (49%), Positives = 131/235 (55%), Gaps = 16/235 (6%)
 Frame = +2

Query: 8    PINDAASRGNGANYPSGDAXXXXXXXXXXXXXQ--PPYKPGSGPVRGRGGMMNKNM---- 169
            P+ND   RG   NY SGD              Q  P   PG G +RGRG M  +NM    
Sbjct: 335  PMNDGGGRGGNTNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRGRGPMGARNMIGSS 394

Query: 170  ------TXXXXXXXXXXXXXXXXFHAPPVMMPH-QGMMGPGFDLAFMGRGAGYGNFSGPG 328
                                   F  P   M H Q MMG GFD  +MGRG GYG FSGPG
Sbjct: 395  SGAGSGVGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGGGYGGFSGPG 453

Query: 329  FQGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGA 508
            F GMLP FP VN+MGL GVAPHVNPAFF                   PH GMW D++MG 
Sbjct: 454  FPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPGMWTDSSMGG 513

Query: 509  WGGEEHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            W GEEHG   RESSYGG+D AS+YGYGEA+H+KGARS+AASREK++ SERDWS N
Sbjct: 514  WLGEEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGN 568


>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
            gi|567891321|ref|XP_006438181.1| hypothetical protein
            CICLE_v10030917mg [Citrus clementina]
            gi|557540376|gb|ESR51420.1| hypothetical protein
            CICLE_v10030917mg [Citrus clementina]
            gi|557540377|gb|ESR51421.1| hypothetical protein
            CICLE_v10030917mg [Citrus clementina]
          Length = 655

 Score =  211 bits (537), Expect = 2e-52
 Identities = 117/235 (49%), Positives = 130/235 (55%), Gaps = 16/235 (6%)
 Frame = +2

Query: 8    PINDAASRGNGANYPSGDAXXXXXXXXXXXXXQ--PPYKPGSGPVRGRGGMMNKNM---- 169
            P+ND   RG   NY SGD              Q  P   PG G +RGRG M  +NM    
Sbjct: 335  PMNDGGGRGGNTNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRGRGPMGARNMIGSS 394

Query: 170  ------TXXXXXXXXXXXXXXXXFHAPPVMMPH-QGMMGPGFDLAFMGRGAGYGNFSGPG 328
                                   F  P   M H Q MMG GFD  +MGRG GYG FSGPG
Sbjct: 395  SGAGSGAGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGGGYGGFSGPG 453

Query: 329  FQGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGA 508
            F GMLP FP VN+MGL GVAPHVNPAFF                   PH GMW D++MG 
Sbjct: 454  FPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPGMWTDSSMGG 513

Query: 509  WGGEEHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            W GEEHG   RESSYGG+D AS+YGYGEASH+KGARS+ ASREK++ SERDWS N
Sbjct: 514  WVGEEHGRRTRESSYGGDDGASDYGYGEASHEKGARSTTASREKDRGSERDWSGN 568


>ref|XP_007225677.1| hypothetical protein PRUPE_ppa002814mg [Prunus persica]
            gi|462422613|gb|EMJ26876.1| hypothetical protein
            PRUPE_ppa002814mg [Prunus persica]
          Length = 630

 Score =  208 bits (530), Expect = 1e-51
 Identities = 114/236 (48%), Positives = 129/236 (54%), Gaps = 15/236 (6%)
 Frame = +2

Query: 2    RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYKP----GSGPVRGRGGMMN-KN 166
            R P+N+   RG G NY +GD                        G GP+RGRGG M  KN
Sbjct: 307  RRPMNEGVGRGGGVNYQTGDTGGRNFGRGGWGRGGQGVANRGPGGGGPMRGRGGAMGAKN 366

Query: 167  MTXXXXXXXXXXXXXXXXFHAPPV-------MMPHQGMMGPGFDLAFMGRGAGYGNFSGP 325
            M                   A P        MM  QGMMG GFD  +MGRG GYG F GP
Sbjct: 367  MAGNPAGVGTGANGGYGQGLAGPGFGGPVGGMMNPQGMMGAGFDPTYMGRGGGYGGFPGP 426

Query: 326  GFQGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMG 505
             F GML  FP VN+MGL GVAPHVNPAFF                    H+GMWND +MG
Sbjct: 427  AFPGMLSSFPAVNTMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMDGHHAGMWNDPSMG 486

Query: 506  AWGGEEHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
             WGG+EHG   RESSYGG+D ASEYGYGEA+H+KG RS+A SRE+E+ SERDWS N
Sbjct: 487  GWGGDEHGRRTRESSYGGDDGASEYGYGEANHEKGGRSNAPSRERERGSERDWSGN 542


>ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Populus trichocarpa]
           gi|550329195|gb|ERP56065.1| hypothetical protein
           POPTR_0010s06150g [Populus trichocarpa]
          Length = 591

 Score =  206 bits (524), Expect = 7e-51
 Identities = 116/233 (49%), Positives = 126/233 (54%), Gaps = 12/233 (5%)
 Frame = +2

Query: 2   RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYK--PGSGPVRGRGGMMNKNMTX 175
           R  +ND   RG  ANY SGD              Q      PG GP+RGRGGM  KNM  
Sbjct: 275 RGSMNDGMGRGGNANYQSGDGGRNYGRGGWGRGGQGVLNRGPGGGPMRGRGGMGPKNMAG 334

Query: 176 XXXXXXXXXXXXXXX-------FHAPPV-MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGF 331
                                 F  P   MM HQGMMG GFD  +MGRG GYG F G GF
Sbjct: 335 NVAGVGSGANGGGYGQGIAGPAFGGPAGGMMHHQGMMGAGFDPLYMGRGGGYGGFPGHGF 394

Query: 332 QGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAW 511
            GMLP FP VNSMGL GVAPHVNPAFF                   P+ G W DT+MG W
Sbjct: 395 PGMLPSFPAVNSMGLAGVAPHVNPAFFARGMAPNGMGMMASSGMEGPNPGKWPDTSMGGW 454

Query: 512 GGE--EHGRESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
           G E     RESSY G++ ASEYGYGE +H+KGARSS ASREKE+ SERDWS N
Sbjct: 455 GEEPGRRTRESSYDGDEGASEYGYGEGNHEKGARSSGASREKERVSERDWSGN 507


>ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobroma cacao]
            gi|590695488|ref|XP_007044903.1| RNA-binding family
            protein isoform 1 [Theobroma cacao]
            gi|508708837|gb|EOY00734.1| RNA-binding family protein
            isoform 1 [Theobroma cacao] gi|508708838|gb|EOY00735.1|
            RNA-binding family protein isoform 1 [Theobroma cacao]
          Length = 653

 Score =  204 bits (520), Expect = 2e-50
 Identities = 113/231 (48%), Positives = 126/231 (54%), Gaps = 14/231 (6%)
 Frame = +2

Query: 14   NDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYKPGS--GPVRGRGGMMNKNMTXXXXX 187
            ND   RG   NY SGDA             Q         GP+RGRGG+  KNM      
Sbjct: 337  NDGLGRGGNMNYQSGDAGRNYGRGGWGRGGQGVVNRSGVGGPMRGRGGVGVKNMVGSSAG 396

Query: 188  XXXXXXXXXXXFHAPPV---------MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGFQGM 340
                          P           MM  QGMMG GFD  +MGRG  YG F GPGF GM
Sbjct: 397  VGNGANGGAAYGQGPAGPPFGGPAGGMMHPQGMMGAGFDPTYMGRGGSYGGFPGPGFPGM 456

Query: 341  LPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAWGGE 520
            LP FP VN++GL GVAPHVNPAFF                   PH GMW DT+MG WGG+
Sbjct: 457  LPSFPAVNTLGLAGVAPHVNPAFFGRGMAPNGMGMMGGPGMDGPHVGMWTDTSMGGWGGD 516

Query: 521  EHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            EHG   RESSYGGED ASEYGYG+A+H+KG RSS ASREKE+ S+R+WS N
Sbjct: 517  EHGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSDREWSGN 566


>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
            vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
            uncharacterized protein LOC100268141 isoform 2 [Vitis
            vinifera]
          Length = 647

 Score =  204 bits (519), Expect = 3e-50
 Identities = 111/234 (47%), Positives = 126/234 (53%), Gaps = 13/234 (5%)
 Frame = +2

Query: 2    RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYKPG---SGPVRGRGGMMN-KNM 169
            R P+ND   RG G N   GDA             Q     G    GP+RGRGG +  KNM
Sbjct: 330  RRPMNDGVGRGGGMNMQGGDAGRNYGRGGWGRGGQGILNRGPGGGGPMRGRGGAVGAKNM 389

Query: 170  TXXXXXXXXXXXXXXXXFHAPPV------MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGF 331
                                P        +M  QGMMG GFD  +MGRG  YG FSG  F
Sbjct: 390  VGNTAGVGASGGGYGQGLAGPTFGGPAGGLMHPQGMMGSGFDPTYMGRGGAYGGFSGSAF 449

Query: 332  QGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAW 511
             GM+P FP VN+MGL GVAPHVNPAFF                    H+GMW DT+MG W
Sbjct: 450  PGMVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGATGMDGHHAGMWTDTSMGGW 509

Query: 512  GGEEHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            GGEEHG   RESSYGG+D AS+YGYGE +H+K  RS+ ASREKE+ SERDWS N
Sbjct: 510  GGEEHGRRTRESSYGGDDGASDYGYGEVNHEKVGRSNTASREKERGSERDWSGN 563


>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
            gi|223546091|gb|EEF47594.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 644

 Score =  204 bits (518), Expect = 3e-50
 Identities = 115/235 (48%), Positives = 130/235 (55%), Gaps = 14/235 (5%)
 Frame = +2

Query: 2    RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYKPG---SGPVRGRGGMMN-KNM 169
            R P+ND A RG   NY  GDA             Q     G    G + GRGG M  KN+
Sbjct: 323  RRPMNDGAGRGGNMNYQGGDAGRNFGRGGWGRGGQGILNRGPGGGGRMGGRGGSMGAKNI 382

Query: 170  TXXXXXXXXXXXXXXXX-------FHAPP-VMMPHQGMMGPGFDLAFMGRGAGYGNFSGP 325
                                    F  P   M+P Q MM  GFD  +MGRGAGYG F+GP
Sbjct: 383  VGGAGGVGSGANGGGYGQGLAGPAFGGPAGAMLPPQSMMRAGFDPTYMGRGAGYGGFAGP 442

Query: 326  GFQGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMG 505
            GF GMLP FP VN+MGL GVAPHVNPAFF                   P++GMW+DT+MG
Sbjct: 443  GFPGMLPSFPAVNAMGLAGVAPHVNPAFFGRGMAPNGMGMMGPSGMDGPNAGMWSDTSMG 502

Query: 506  AWGGE--EHGRESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
             WG E     RESSYGG+D ASEYGYGE +H+KGARSSAASREKE+ SERDWS N
Sbjct: 503  GWGEEPGRRTRESSYGGDDGASEYGYGEVNHEKGARSSAASREKERASERDWSGN 557


>ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobroma cacao]
            gi|508708844|gb|EOY00741.1| RNA-binding family protein
            isoform 6 [Theobroma cacao]
          Length = 602

 Score =  202 bits (514), Expect = 1e-49
 Identities = 113/230 (49%), Positives = 126/230 (54%), Gaps = 13/230 (5%)
 Frame = +2

Query: 14   NDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYKP--GSGPVRGRGGMMNKNMTXXXXX 187
            N+   RG   NY SGDA             Q       G G +RGRGG+  KNM      
Sbjct: 337  NEGLGRGGNLNYQSGDAGRNYGRGGWGRGGQGGVNRAGGGGLMRGRGGVGVKNMVGISAG 396

Query: 188  XXXXXXXXXXXFHAPPV--------MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGFQGML 343
                          P          MM  QGMMG GFD  +M RG GYG F GPGF GML
Sbjct: 397  VGNGANGAGAYGQGPGPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGML 456

Query: 344  PPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAWGGEE 523
            P FP VN+MGL GVAPHVNPAFF                   PH+GMW D +MG WGG+E
Sbjct: 457  PSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDASMGGWGGDE 516

Query: 524  HG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            HG   RESSYGGED ASEYGYG+A+H+KG RSS ASREKE+ SER+WS N
Sbjct: 517  HGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSEREWSGN 565


>ref|XP_007044908.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
            gi|508708843|gb|EOY00740.1| RNA-binding family protein
            isoform 5, partial [Theobroma cacao]
          Length = 656

 Score =  202 bits (514), Expect = 1e-49
 Identities = 113/230 (49%), Positives = 126/230 (54%), Gaps = 13/230 (5%)
 Frame = +2

Query: 14   NDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYKP--GSGPVRGRGGMMNKNMTXXXXX 187
            N+   RG   NY SGDA             Q       G G +RGRGG+  KNM      
Sbjct: 337  NEGLGRGGNLNYQSGDAGRNYGRGGWGRGGQGGVNRAGGGGLMRGRGGVGVKNMVGISAG 396

Query: 188  XXXXXXXXXXXFHAPPV--------MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGFQGML 343
                          P          MM  QGMMG GFD  +M RG GYG F GPGF GML
Sbjct: 397  VGNGANGAGAYGQGPGPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGML 456

Query: 344  PPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAWGGEE 523
            P FP VN+MGL GVAPHVNPAFF                   PH+GMW D +MG WGG+E
Sbjct: 457  PSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDASMGGWGGDE 516

Query: 524  HG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            HG   RESSYGGED ASEYGYG+A+H+KG RSS ASREKE+ SER+WS N
Sbjct: 517  HGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSEREWSGN 565


>ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobroma cacao]
            gi|508708842|gb|EOY00739.1| RNA-binding family protein
            isoform 4 [Theobroma cacao]
          Length = 697

 Score =  202 bits (514), Expect = 1e-49
 Identities = 113/230 (49%), Positives = 126/230 (54%), Gaps = 13/230 (5%)
 Frame = +2

Query: 14   NDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYKP--GSGPVRGRGGMMNKNMTXXXXX 187
            N+   RG   NY SGDA             Q       G G +RGRGG+  KNM      
Sbjct: 337  NEGLGRGGNLNYQSGDAGRNYGRGGWGRGGQGGVNRAGGGGLMRGRGGVGVKNMVGISAG 396

Query: 188  XXXXXXXXXXXFHAPPV--------MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGFQGML 343
                          P          MM  QGMMG GFD  +M RG GYG F GPGF GML
Sbjct: 397  VGNGANGAGAYGQGPGPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGML 456

Query: 344  PPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAWGGEE 523
            P FP VN+MGL GVAPHVNPAFF                   PH+GMW D +MG WGG+E
Sbjct: 457  PSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDASMGGWGGDE 516

Query: 524  HG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            HG   RESSYGGED ASEYGYG+A+H+KG RSS ASREKE+ SER+WS N
Sbjct: 517  HGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSEREWSGN 565


>ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobroma cacao]
            gi|590695496|ref|XP_007044905.1| RNA-binding family
            protein isoform 1 [Theobroma cacao]
            gi|590695500|ref|XP_007044906.1| RNA-binding family
            protein isoform 1 [Theobroma cacao]
            gi|508708839|gb|EOY00736.1| RNA-binding family protein
            isoform 1 [Theobroma cacao] gi|508708840|gb|EOY00737.1|
            RNA-binding family protein isoform 1 [Theobroma cacao]
            gi|508708841|gb|EOY00738.1| RNA-binding family protein
            isoform 1 [Theobroma cacao]
          Length = 652

 Score =  202 bits (514), Expect = 1e-49
 Identities = 113/230 (49%), Positives = 126/230 (54%), Gaps = 13/230 (5%)
 Frame = +2

Query: 14   NDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYKP--GSGPVRGRGGMMNKNMTXXXXX 187
            N+   RG   NY SGDA             Q       G G +RGRGG+  KNM      
Sbjct: 337  NEGLGRGGNLNYQSGDAGRNYGRGGWGRGGQGGVNRAGGGGLMRGRGGVGVKNMVGISAG 396

Query: 188  XXXXXXXXXXXFHAPPV--------MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGFQGML 343
                          P          MM  QGMMG GFD  +M RG GYG F GPGF GML
Sbjct: 397  VGNGANGAGAYGQGPGPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGML 456

Query: 344  PPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAWGGEE 523
            P FP VN+MGL GVAPHVNPAFF                   PH+GMW D +MG WGG+E
Sbjct: 457  PSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDASMGGWGGDE 516

Query: 524  HG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            HG   RESSYGGED ASEYGYG+A+H+KG RSS ASREKE+ SER+WS N
Sbjct: 517  HGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSEREWSGN 565


>gb|EXB82464.1| Cleavage and polyadenylation specificity factor subunit [Morus
           notabilis]
          Length = 636

 Score =  191 bits (486), Expect = 2e-46
 Identities = 110/234 (47%), Positives = 122/234 (52%), Gaps = 13/234 (5%)
 Frame = +2

Query: 2   RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQ--PPYKPGSG-PVRGRGGMMN-KNM 169
           R PIND   RG   N+ SGD              Q  P   PGSG P+RGRGG M  KNM
Sbjct: 326 RRPINDGVGRGGNPNFQSGDGGRNFGRGGWGRGGQGAPNRGPGSGGPMRGRGGAMGAKNM 385

Query: 170 TXXXXXXXXXXXXXXXXFHAPPV------MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGF 331
                               PP       MM  QGMMG GFD  +MGRG GYG F+GP F
Sbjct: 386 VGNNAGVGGGGYGQGLA--GPPFGGPAGGMMNPQGMMGTGFDPTYMGRGVGYGGFAGPAF 443

Query: 332 QGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAW 511
            GMLP FP VN+MG   VAPHVNPAFF                      GMWND ++G W
Sbjct: 444 PGMLPSFPAVNTMGFAAVAPHVNPAFFGRGMTNNGMGMVGSSLMDGHQGGMWNDPSIGGW 503

Query: 512 GGEEHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
           GGEEHG   RESSYGG+D ASEYGYG+ +H+KG R        E+ SERDWS N
Sbjct: 504 GGEEHGRRTRESSYGGDDGASEYGYGDTNHEKGGR--------ERGSERDWSGN 549


>ref|XP_002312652.1| RNA recognition motif-containing family protein [Populus
           trichocarpa] gi|222852472|gb|EEE90019.1| RNA recognition
           motif-containing family protein [Populus trichocarpa]
          Length = 619

 Score =  189 bits (480), Expect = 9e-46
 Identities = 109/231 (47%), Positives = 120/231 (51%), Gaps = 10/231 (4%)
 Frame = +2

Query: 2   RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYK--PGSGPVRGRGGMMNKNMTX 175
           R  +ND A RG  AN+ SGD              Q      PG GP+RGRG M  KNM  
Sbjct: 320 RGSMNDGAGRGGNANFQSGDGGRNYGRGAWGRGGQGILNRGPGGGPMRGRGAMGPKNMAG 379

Query: 176 XXXXXXXXXXXXXXX-------FHAPPV-MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGF 331
                                 F  P   MMP QGMMG GFD  +MGRG GYG F+GPGF
Sbjct: 380 NVAGVGSGANGGGYGQGLAGPAFGGPAGGMMPPQGMMGAGFDPLYMGRGGGYGGFAGPGF 439

Query: 332 QGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAW 511
            GMLP FP VNSMGL GVAPHVNPAFF                   P+ GMW        
Sbjct: 440 PGMLPSFPAVNSMGLAGVAPHVNPAFFARGMAPNGMGMMVSSGMDGPNPGMW-------- 491

Query: 512 GGEEHGRESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
                  ESSY G++ ASEYGYGE +H+KGARSS ASREKE+ SERDWS N
Sbjct: 492 -------ESSYDGDEGASEYGYGEGNHEKGARSSGASREKERGSERDWSGN 535


>ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309507 [Fragaria vesca
            subsp. vesca]
          Length = 646

 Score =  185 bits (469), Expect = 2e-44
 Identities = 107/235 (45%), Positives = 121/235 (51%), Gaps = 16/235 (6%)
 Frame = +2

Query: 2    RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPY----KPGSGPVRGRGGMMNKNM 169
            R P+ND A RG   N+  GD                        G GP RGRG M  +NM
Sbjct: 323  RRPMNDGAGRGGNMNFQGGDTGRNFGRGNNWGRGGQGVLNRGPGGGGPGRGRGAMGARNM 382

Query: 170  TXXXXXXXXXXXXXXXX-------FHAPPV-MMPHQGMMGPGFDLAFMGRGAGYGNFSGP 325
                                    F  P   MM   GMMGPGFD  +MGRG GYG F GP
Sbjct: 383  VGNNAGVGTGANGGGYGQGLGGPGFGGPVGGMMNAPGMMGPGFDPTYMGRGGGYGGFPGP 442

Query: 326  GFQGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMG 505
            GF GMLP FPGVN+MGL GVAPHVNPAFF                    H+ MWND +M 
Sbjct: 443  GFPGMLPQFPGVNAMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMEGHHAPMWNDPSMA 502

Query: 506  AWGGEEHG---RESSYGGEDNASEYG-YGEASHDKGARSSAASREKEKNSERDWS 658
             W GEE     RESSYGG+D  SEYG YGEA+H+K  RSSAA RE+E+ SER+W+
Sbjct: 503  GWTGEEQDRRTRESSYGGDDGGSEYGNYGEANHEKPVRSSAAPRERERESEREWT 557


>ref|XP_002315647.1| RNA recognition motif-containing family protein [Populus
           trichocarpa] gi|222864687|gb|EEF01818.1| RNA recognition
           motif-containing family protein [Populus trichocarpa]
          Length = 573

 Score =  183 bits (465), Expect = 5e-44
 Identities = 110/231 (47%), Positives = 120/231 (51%), Gaps = 10/231 (4%)
 Frame = +2

Query: 2   RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYK--PGSGPVRGRGGMMNKNMTX 175
           R  +ND   RG  ANY SGD              Q      PG GP+RGRGGM  KNM  
Sbjct: 275 RGSMNDGMGRGGNANYQSGDGGRNYGRGGWGRGGQGVLNRGPGGGPMRGRGGMGPKNMAG 334

Query: 176 XXXXXXXXXXXXXXX-------FHAPPV-MMPHQGMMGPGFDLAFMGRGAGYGNFSGPGF 331
                                 F  P   MM HQGMMG GFD  +MGRG GYG F G GF
Sbjct: 335 NVAGVGSGANGGGYGQGIAGPAFGGPAGGMMHHQGMMGAGFDPLYMGRGGGYGGFPGHGF 394

Query: 332 QGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMGAW 511
            GMLP FP VNSMGL GVAPHVNPAFF                      GM   + M   
Sbjct: 395 PGMLPSFPAVNSMGLAGVAPHVNPAFFARGMAPNG-------------MGMMASSGM--- 438

Query: 512 GGEEHGRESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSN 664
            G   G+ESSY G++ ASEYGYGE +H+KGARSS ASREKE+ SERDWS N
Sbjct: 439 EGPNPGKESSYDGDEGASEYGYGEGNHEKGARSSGASREKERVSERDWSGN 489


>ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [Amborella trichopoda]
            gi|548855834|gb|ERN13697.1| hypothetical protein
            AMTR_s00049p00146760 [Amborella trichopoda]
          Length = 659

 Score =  168 bits (425), Expect = 2e-39
 Identities = 101/240 (42%), Positives = 124/240 (51%), Gaps = 18/240 (7%)
 Frame = +2

Query: 2    RNPINDAASRGNGANYPSGDAXXXXXXXXXXXXXQPPYKPGSGP--VRGR-GGMMNKNMT 172
            R P+ND   R  G +Y  GD                P + G GP  +RGR GG+  K M 
Sbjct: 346  RRPMNDGGGRAGGPSYQGGDRNYGNKMGWGRGNQGVPNR-GQGPAGLRGRPGGLTGKAMV 404

Query: 173  XXXXXXXXXXXXXXXXFHAPPV------MMPHQGMMGPGFDLAF---MGRGAGYGNFSGP 325
                              APP+      ++  QGMMG GFD  +   +GRG+GYG FSGP
Sbjct: 405  GGPSGANPYGQA----LSAPPLGGPPGGLLHPQGMMGSGFDPTYGAHLGRGSGYGGFSGP 460

Query: 326  GFQGMLPPFPGVNSMGLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXXPHSGMWNDTNMG 505
             F GMLP F  + ++GLPGVAPHVNPAFF                    H GMW D++MG
Sbjct: 461  HFPGMLPSFSPMGTVGLPGVAPHVNPAFFGRGVSANGMGMMGSGAMDGHHGGMWGDSSMG 520

Query: 506  ---AWGGEEHG---RESSYGGEDNASEYGYGEASHDKGARSSAASREKEKNSERDWSSNP 667
                WG EEHG   RESSY G+D AS+YGYG+  H++G   S   REK++ SERDWSS P
Sbjct: 521  GGVGWGNEEHGRRTRESSY-GDDGASDYGYGDGGHERGGGRSNPGREKDRGSERDWSSGP 579