BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00018239
         (1128 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         523   e-146
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   519   e-144
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   519   e-144
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              513   e-143
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...   512   e-143
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   504   e-140
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     503   e-140
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   499   e-139
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  499   e-139
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   499   e-138
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       498   e-138
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             498   e-138
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   496   e-138
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]   496   e-138
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   495   e-137
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  494   e-137
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   493   e-137
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        493   e-137
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]         493   e-137
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]                492   e-136

>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  523 bits (1346), Expect = e-146
 Identities = 251/358 (70%), Positives = 292/358 (81%)
 Frame = -2

Query: 1076 IPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRTSPEETKEIDR 897
            +PPV+  +++E++DVFP+EIP GLPPIRGIEHQID  PGA LPNR  YRT+PEETKEI R
Sbjct: 680  LPPVITNILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQR 739

Query: 896  QVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRFPISRLDDMLD 717
            QV+ELL+K  +RESL  CAVPVILVPKK+  W MC+DCRAIN I ++YR PI RLDDMLD
Sbjct: 740  QVQELLDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLD 799

Query: 716  ELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTNAPSTFMRLMN 537
            ELSGA VFSK+DLRSGY Q+RM  GDEWKTAFK K  LYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 800  ELSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMN 859

Query: 536  HVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFKCTFCMDEVIF 357
             VLR  IGK+VVVYFDDIL+YS  +DEHV H+R VF  LRD +L+ NL KCTFC D V F
Sbjct: 860  EVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSF 919

Query: 356  LGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFSSIAAPLTELS 177
            LG+VV+  G+EVD+ KV+AI  W MPK+   VRSF GLAGFY RFV DFS+IAAPL EL+
Sbjct: 920  LGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELT 979

Query: 176  RKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIGAILMQERK 3
            +K  +F WGK QEHAFN+LK KL +AP+L LPDFNK FE+ECD SGIG+G +L+QE K
Sbjct: 980  KKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGK 1037


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  519 bits (1336), Expect = e-144
 Identities = 247/372 (66%), Positives = 303/372 (81%)
 Frame = -2

Query: 1118 VLVNFKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRP 939
            +L+NF+   TP   +P  +  L++ F DVFP + P GLPP+RGIEHQIDF PG+ LPNRP
Sbjct: 649  ILINFEQL-TPS--LPNSVSSLLQNFEDVFPDDTPKGLPPLRGIEHQIDFVPGSQLPNRP 705

Query: 938  AYRTSPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPV 759
            AYR++PEETKE+ RQV+ELL K  +RES+  C+VPV+LVPKK+  W MC+DCRAIN I V
Sbjct: 706  AYRSNPEETKELQRQVEELLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITV 765

Query: 758  KYRFPISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPF 579
            KYR PI RLDDMLD+L G+ +FSKIDL+SGY Q+R++ GDEWKTAFK K+ LYEWLVMPF
Sbjct: 766  KYRHPIPRLDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGDEWKTAFKTKYGLYEWLVMPF 825

Query: 578  GLTNAPSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYA 399
            GLTNAPSTFMRLMNHV +D  GK++VVYFDDIL++S  +DEH+ HL+ VF +LR+ +L+A
Sbjct: 826  GLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKVFEVLRNQRLFA 885

Query: 398  NLFKCTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFV 219
            NL KCTFC+D V+FLGFVVSS GVEVD  K+KAI+EW  P S  +VRSFHGLA FY RFV
Sbjct: 886  NLKKCTFCVDRVVFLGFVVSSMGVEVDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFV 945

Query: 218  SDFSSIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSG 39
             DFS+IAAPLTE+ +KD+ F WGK Q+ AFNLLK KLC+AP+L LPDF+K FE+ECD SG
Sbjct: 946  RDFSTIAAPLTEVIKKDKVFTWGKEQDDAFNLLKDKLCSAPLLQLPDFSKSFEVECDASG 1005

Query: 38   IGIGAILMQERK 3
             GIGA+LMQ+ K
Sbjct: 1006 KGIGAVLMQDSK 1017


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  519 bits (1336), Expect = e-144
 Identities = 247/372 (66%), Positives = 303/372 (81%)
 Frame = -2

Query: 1118 VLVNFKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRP 939
            +L+NF+   TP   +P  +  L++ F DVFP + P GLPP+RGIEHQIDF PG+ LPNRP
Sbjct: 649  ILINFEQL-TPS--LPNSVSSLLQNFEDVFPDDTPKGLPPLRGIEHQIDFVPGSQLPNRP 705

Query: 938  AYRTSPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPV 759
            AYR++PEETKE+ RQV+ELL K  +RES+  C+VPV+LVPKK+  W MC+DCRAIN I V
Sbjct: 706  AYRSNPEETKELQRQVEELLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITV 765

Query: 758  KYRFPISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPF 579
            KYR PI RLDDMLD+L G+ +FSKIDL+SGY Q+R++ GDEWKTAFK K+ LYEWLVMPF
Sbjct: 766  KYRHPIPRLDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGDEWKTAFKTKYGLYEWLVMPF 825

Query: 578  GLTNAPSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYA 399
            GLTNAPSTFMRLMNHV +D  GK++VVYFDDIL++S  +DEH+ HL+ VF +LR+ +L+A
Sbjct: 826  GLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKVFEVLRNQRLFA 885

Query: 398  NLFKCTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFV 219
            NL KCTFC+D V+FLGFVVSS GVEVD  K+KAI+EW  P S  +VRSFHGLA FY RFV
Sbjct: 886  NLKKCTFCVDRVVFLGFVVSSMGVEVDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFV 945

Query: 218  SDFSSIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSG 39
             DFS+IAAPLTE+ +KD+ F WGK Q+ AFNLLK KLC+AP+L LPDF+K FE+ECD SG
Sbjct: 946  RDFSTIAAPLTEVIKKDKVFTWGKEQDDAFNLLKDKLCSAPLLQLPDFSKSFEVECDASG 1005

Query: 38   IGIGAILMQERK 3
             GIGA+LMQ+ K
Sbjct: 1006 KGIGAVLMQDSK 1017


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  513 bits (1321), Expect = e-143
 Identities = 247/362 (68%), Positives = 293/362 (80%)
 Frame = -2

Query: 1088 PDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRTSPEETK 909
            P+  IP  ++ L++++ DVFP E P GLPPIRGIEHQIDF PGA LPNRPAYRT+P ETK
Sbjct: 865  PEQAIPSKIKFLLQDYTDVFPEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETK 924

Query: 908  EIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRFPISRLD 729
            E+++QV EL+E+  IRES+  CAVPV+LVPKK+  W MC+DCRAIN I VKYR PI RLD
Sbjct: 925  ELEKQVTELMERGHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLD 984

Query: 728  DMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTNAPSTFM 549
            DMLDEL G+S+FSK+DL+SGY Q+RM EGDEWKTAFK    LYEWLVMPFGLTNAPSTFM
Sbjct: 985  DMLDELHGSSIFSKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFM 1044

Query: 548  RLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFKCTFCMD 369
            RLMNHVLR  IG++V+VYFDDILVYS  ++EHV HL+ V  +LR  KLYANL KCTF  D
Sbjct: 1045 RLMNHVLRAFIGRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTD 1104

Query: 368  EVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFSSIAAPL 189
             ++FLGFVVS+ GV+VD  KVKAI EW  PKS  +VRSFHGLAGFY RFV DFS++AAPL
Sbjct: 1105 NLVFLGFVVSTDGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPL 1164

Query: 188  TELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIGAILMQE 9
            TE+ +K+  F+W +AQE AF  LK KL +APVL LPDF K FEIECD SG+GIG +LMQ+
Sbjct: 1165 TEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQD 1224

Query: 8    RK 3
            +K
Sbjct: 1225 KK 1226


>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score =  512 bits (1319), Expect = e-143
 Identities = 249/368 (67%), Positives = 291/368 (79%)
 Frame = -2

Query: 1112 VNFKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAY 933
            ++F  N     +IP  +  L+ EF DVFP E+P GLPPIRGIEHQID  PGA LPNRPAY
Sbjct: 608  IDFCLNVIKSEIIPSDVSALLSEFADVFPEELPKGLPPIRGIEHQIDLIPGASLPNRPAY 667

Query: 932  RTSPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKY 753
            RT+P+E KEI RQV ELL+   I+ESL  CAVPV+LVPKK+  W MC+DCRAIN I VKY
Sbjct: 668  RTNPDEAKEIQRQVDELLQAGFIQESLSPCAVPVLLVPKKDGTWRMCVDCRAINNITVKY 727

Query: 752  RFPISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGL 573
            R+PI RLDDMLDEL GA +FSKIDLR GY Q+RM +GDEWKTAFK K+ LYEWLVMPFGL
Sbjct: 728  RYPIPRLDDMLDELHGAKIFSKIDLRRGYHQIRMQKGDEWKTAFKTKNGLYEWLVMPFGL 787

Query: 572  TNAPSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANL 393
            TNAPSTFMRLMNHVLR+ IGK+VVVYFDDIL+YS    +H+ HL+ VF++LR  +LYANL
Sbjct: 788  TNAPSTFMRLMNHVLRNFIGKFVVVYFDDILIYSKDPQKHIIHLKEVFLVLRREQLYANL 847

Query: 392  FKCTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSD 213
             KC F ++ V+FLGF+VSS G+EVD TK++AI +W  PK+   VRSFHGLA FY RFV D
Sbjct: 848  EKCYFGVESVVFLGFIVSSKGIEVDETKIQAIRDWPTPKTATKVRSFHGLASFYRRFVKD 907

Query: 212  FSSIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIG 33
            FS+IAAPL EL +KD  FEWG  QE AF  LK KLC+A VL LP+F+K FEIECD SGIG
Sbjct: 908  FSTIAAPLNELVKKDVKFEWGPKQEQAFQTLKEKLCSAQVLSLPNFDKTFEIECDASGIG 967

Query: 32   IGAILMQE 9
            IGA+LMQE
Sbjct: 968  IGAVLMQE 975


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  504 bits (1297), Expect = e-140
 Identities = 241/358 (67%), Positives = 286/358 (79%)
 Frame = -2

Query: 1076 IPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRTSPEETKEIDR 897
            +PP +  +++E++DVFP E+P GLPP+RGIEHQID  PGA LPNR  YRT+PEETKEI R
Sbjct: 677  LPPAVANILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQR 736

Query: 896  QVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRFPISRLDDMLD 717
            QV ELL+K  +RESL  CAVPVILVPKK+  W MC+DCRAIN I ++YR PI RLDDMLD
Sbjct: 737  QVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLD 796

Query: 716  ELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTNAPSTFMRLMN 537
            ELSG+ VFSK+DLRSGY Q+RM  GDEWKTAFK K  LYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 797  ELSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMN 856

Query: 536  HVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFKCTFCMDEVIF 357
             VLR  IGK+VVVYFDDIL+YS  + EH  HLR VF  LRD +L+ NL KCTFC D V F
Sbjct: 857  EVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSF 916

Query: 356  LGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFSSIAAPLTELS 177
            LG+VV+  G+EVD+ KV+AI+ W  PK+ + VRSF GLAGFY RFV DFS+IAAPL  L+
Sbjct: 917  LGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLT 976

Query: 176  RKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIGAILMQERK 3
            +K   F WG +QE+AF++LK KL +AP+L LPDFNK FE+ECD SGIG+G +L+QE K
Sbjct: 977  KKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGK 1034



 Score =  208 bits (530), Expect = 3e-51
 Identities = 103/199 (51%), Positives = 133/199 (66%)
 Frame = -2

Query: 605  LYEWLVMPFGLTNAPSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFV 426
            LYE+ VM FGLTNAP+ FM LMN V  + + K+VVV+ DDILVYS   ++H  HLR V  
Sbjct: 1626 LYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVLG 1685

Query: 425  LLRDVKLYANLFKCTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHG 246
             LR+ +LYA L KC F + EV FLG V+S+ GV VD   V A+ +W  PK+   +RSF G
Sbjct: 1686 KLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLG 1745

Query: 245  LAGFYHRFVSDFSSIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKM 66
            LAG+Y RF+ +FS IA P+T+L +K+  F W    E AF  LK KL ++PVL+LPD  K 
Sbjct: 1746 LAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKD 1805

Query: 65   FEIECDTSGIGIGAILMQE 9
            F + CD S  G+G +LMQE
Sbjct: 1806 FMVYCDASPQGLGCVLMQE 1824


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  503 bits (1294), Expect = e-140
 Identities = 244/363 (67%), Positives = 289/363 (79%)
 Frame = -2

Query: 1100 ANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRTSP 921
            AND   V  P V+  +++E+ DVFP E P GLPP+RGIEHQID  PGA LPNRPAYRT+P
Sbjct: 674  ANDLTSV--PSVVARVLQEYEDVFPEETPVGLPPLRGIEHQIDLIPGATLPNRPAYRTNP 731

Query: 920  EETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRFPI 741
            EETKEI RQV+ LL+K  +RESL  CAVPVILVPKK+  W MC+DCRAIN I V+YR PI
Sbjct: 732  EETKEIQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPI 791

Query: 740  SRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTNAP 561
             RLDDMLDELSG+ +FSKIDLRSG+ Q+RM  GDEWKTAFK K  LYEWLVMPFGLTNAP
Sbjct: 792  PRLDDMLDELSGSMIFSKIDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAP 851

Query: 560  STFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFKCT 381
            STFMRLMNHVLR  IGK+VVVYFDDIL+YS  ++EHV H++ V  +LR  +LYANL KCT
Sbjct: 852  STFMRLMNHVLRAFIGKFVVVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCT 911

Query: 380  FCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFSSI 201
            FC D+V+FLGFVVS  G++VD +KVKAI++W  P++ + V+SF GLAGFY RFV  FS+I
Sbjct: 912  FCTDQVVFLGFVVSGLGIQVDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTI 971

Query: 200  AAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIGAI 21
            AAPL EL++K   F+WG+ QE AF  LK +L   P+LVLPDF K FE+ECD SGIGIG +
Sbjct: 972  AAPLNELTKKGVAFQWGEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGV 1031

Query: 20   LMQ 12
            LMQ
Sbjct: 1032 LMQ 1034


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  499 bits (1285), Expect = e-139
 Identities = 239/358 (66%), Positives = 285/358 (79%)
 Frame = -2

Query: 1076 IPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRTSPEETKEIDR 897
            +PP +  +++E++DVFP E+P GLPP+RGIEHQID  PGA LPNR  YRT+PEETKEI R
Sbjct: 656  LPPAVANILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQR 715

Query: 896  QVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRFPISRLDDMLD 717
            QV ELL+K  +RESL  CAVPVILVPKK+  W MC+DCRAIN I ++YR PI RLDDMLD
Sbjct: 716  QVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLD 775

Query: 716  ELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTNAPSTFMRLMN 537
            ELSG+ VFSK++LRSGY Q+ M  GDEWKTAFK K  LYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 776  ELSGSIVFSKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMN 835

Query: 536  HVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFKCTFCMDEVIF 357
             VLR  IGK+VVVYFDDIL+YS  + EH  HLR VF  LRD +L+ NL KCTFC D V F
Sbjct: 836  EVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSF 895

Query: 356  LGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFSSIAAPLTELS 177
            LG+VV+  G+EVD+ KV+AI+ W  PK+ + VRSF GLAGFY RFV DFS+IAAPL  L+
Sbjct: 896  LGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCRFVQDFSTIAAPLNALT 955

Query: 176  RKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIGAILMQERK 3
            +K   F WG +QE+AF++LK KL +AP+L LPDFNK FE+ECD SGIG+G +L+QE K
Sbjct: 956  KKGVPFTWGTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGK 1013


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  499 bits (1285), Expect = e-139
 Identities = 242/370 (65%), Positives = 289/370 (78%)
 Frame = -2

Query: 1112 VNFKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAY 933
            V F   D P   +PP +  +++EF DVFP ++P GLPPIRGIEHQID  PGA LPNR  Y
Sbjct: 722  VLFSFEDMPSS-LPPAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPY 780

Query: 932  RTSPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKY 753
            RT+PEETKEI RQV+ELL+K  IRESL  CAVP+ILVPKK+    MC+DCR IN I ++Y
Sbjct: 781  RTNPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRY 840

Query: 752  RFPISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGL 573
            R PI RLDDMLDELSG+ +FSK+DLRSGY Q+RM  GDEWKTAFK K  LYEWLVMPFGL
Sbjct: 841  RHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGL 900

Query: 572  TNAPSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANL 393
            TNAPSTFMRLMN VLR  IG++VVVYFDDIL+YS  +++H+ HLR VF  LRD +L+ NL
Sbjct: 901  TNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNL 960

Query: 392  FKCTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSD 213
             KCTFC D V FLG+VV+  G+EVD+ K++AIE W  PK+   VRSF GLAGFY RFV D
Sbjct: 961  GKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRD 1020

Query: 212  FSSIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIG 33
            FS+IAAPL EL++KD  + WG AQE AF +LK KL +AP+L LPDFNK FE+ECD SGIG
Sbjct: 1021 FSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIG 1080

Query: 32   IGAILMQERK 3
            +G +L+Q+ K
Sbjct: 1081 LGGVLLQDGK 1090


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  499 bits (1284), Expect = e-138
 Identities = 240/368 (65%), Positives = 288/368 (78%)
 Frame = -2

Query: 1106 FKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRT 927
            F   D P   +PP +  +++EF DVFP ++P GLPPIRGIEHQID  PGA LPNR  YRT
Sbjct: 712  FSFEDVPSS-LPPAVTNILQEFTDVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 770

Query: 926  SPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRF 747
            +PEETKEI RQV+ELL+K  IRESL  CAVP+ILVPKK+    MC+DCR IN I ++YR 
Sbjct: 771  NPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRH 830

Query: 746  PISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTN 567
            PI RLDDMLDELSG+++FSK+DLRSGY Q+RM  GDEWKT FK K  LYEWLVMPFGLTN
Sbjct: 831  PIPRLDDMLDELSGSTIFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTN 890

Query: 566  APSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFK 387
            APSTFMRLMN VLR  IG++VVVYFDDIL+YS  ++EH+ HLR VF+ LRD +L+ NL K
Sbjct: 891  APSTFMRLMNEVLRAFIGRFVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLGK 950

Query: 386  CTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFS 207
            CTFC D V FLG+VV+  G+EVD+ K++AIE W  PK+   VRSF GLAGFY RFV DFS
Sbjct: 951  CTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRFVRDFS 1010

Query: 206  SIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIG 27
            +IAAPL E+++KD  F WG AQE AF +LK KL  AP+L LP+FNK FE+ECD SGIG+G
Sbjct: 1011 TIAAPLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAPLLQLPNFNKTFELECDASGIGLG 1070

Query: 26   AILMQERK 3
             +L+Q+ K
Sbjct: 1071 GVLLQDGK 1078


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  498 bits (1282), Expect = e-138
 Identities = 242/368 (65%), Positives = 288/368 (78%)
 Frame = -2

Query: 1106 FKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRT 927
            F   DTP  + PPV   L++E+ D+FP E+P GLPPIRGIEHQID  PGA LPNR  YRT
Sbjct: 696  FPIEDTPISLRPPVTN-LLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 754

Query: 926  SPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRF 747
            +PEETKEI RQV+ELL+K  +RESL  C+VPV+LVPKK+  W MC+DCRAIN I ++YR 
Sbjct: 755  NPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRH 814

Query: 746  PISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTN 567
            PI RLDDMLDELSG+ VFSKIDLRSGY Q+RM  GDEWKTAFK K  LYEWLVMPFGLTN
Sbjct: 815  PIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTN 874

Query: 566  APSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFK 387
            APSTFMRLMN VLR  IG++VVVYFDDIL+YS  +++H  HLR VF  LRD +L+ NL K
Sbjct: 875  APSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEK 934

Query: 386  CTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFS 207
            CTFC D V FLG+VV+  G+EVD+ KV+AI  W +P +   VRSF GLAGFY RFV DFS
Sbjct: 935  CTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFS 994

Query: 206  SIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIG 27
            +IAAPL EL++++  F W  AQ +AF+ LK KL +AP+L LPDFNK FE+ECD SGIG+G
Sbjct: 995  TIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLG 1054

Query: 26   AILMQERK 3
             +L+QE K
Sbjct: 1055 GVLLQEGK 1062


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  498 bits (1281), Expect = e-138
 Identities = 236/356 (66%), Positives = 283/356 (79%)
 Frame = -2

Query: 1076 IPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRTSPEETKEIDR 897
            +P  ++ L++EF ++FP E+PSGLPPIRGIEH ID  PGA LPNRPAYR++P++T+EI R
Sbjct: 567  LPNCIESLLQEFKELFPEEVPSGLPPIRGIEHHIDLNPGASLPNRPAYRSNPQQTQEIQR 626

Query: 896  QVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRFPISRLDDMLD 717
            QV EL+ K  +RESL  CAVP+ILVPKK+  W MC DCRAI+ I +KYR PI RLDD+LD
Sbjct: 627  QVAELISKGWVRESLSPCAVPIILVPKKDGSWRMCTDCRAISNITIKYRHPIPRLDDLLD 686

Query: 716  ELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTNAPSTFMRLMN 537
            EL GA +FSKIDL+SGY Q+R+ EGDEWKTAFK K  LYEW+VMPFGLTNAPSTFMRLMN
Sbjct: 687  ELFGACLFSKIDLKSGYHQIRIREGDEWKTAFKTKFGLYEWMVMPFGLTNAPSTFMRLMN 746

Query: 536  HVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFKCTFCMDEVIF 357
            HVLR+ +GK+VVVYFDDIL+YS  +D+H  HL+ V  +LR   LYANL KC FC D VIF
Sbjct: 747  HVLREFLGKFVVVYFDDILIYSKNLDDHCIHLKAVLQVLRYENLYANLEKCVFCTDHVIF 806

Query: 356  LGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFSSIAAPLTELS 177
            LGF+VSS GV VD  KVKAI EW  PK+ ++VRSFHGLA FY RFV DFS++AAPL E+ 
Sbjct: 807  LGFIVSSKGVHVDEEKVKAIREWPPPKNVSEVRSFHGLASFYRRFVKDFSTLAAPLNEIV 866

Query: 176  RKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIGAILMQE 9
             KD  F+WG+ QE AF  LK KL  APVL LP+F+K FEIECD S +GIGA+L+QE
Sbjct: 867  EKDVGFKWGEKQEQAFAALKEKLTQAPVLALPNFSKSFEIECDASNVGIGAVLLQE 922


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  496 bits (1278), Expect = e-138
 Identities = 239/368 (64%), Positives = 289/368 (78%)
 Frame = -2

Query: 1106 FKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRT 927
            F   DTP + +PP +  L++E+ D+FP E+P GLPPIRGIEHQID  PGA LPNR  YRT
Sbjct: 696  FPIEDTP-ISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 754

Query: 926  SPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRF 747
            +PEETKEI RQV+ELL+K  +RESL  C++PV+LVPKK+  W MC+DCRAIN I ++YR 
Sbjct: 755  NPEETKEIQRQVQELLDKGYVRESLSPCSIPVLLVPKKDGSWRMCVDCRAINNITIRYRH 814

Query: 746  PISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTN 567
            PI RLDDMLDELSG+ VFSKIDLRSGY Q+RM  GDEWKTAFK K  LYEWLVMPFGLTN
Sbjct: 815  PIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTN 874

Query: 566  APSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFK 387
            APSTF+RLMN VLR  IG++VVVYFDDIL+YS  +++H  HLR VF  LRD +L+ NL K
Sbjct: 875  APSTFIRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEK 934

Query: 386  CTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFS 207
            CTFC D V FLG+VV+  G+EVD+ KV+AI  W +P +   VRSF GLAGFY RFV DFS
Sbjct: 935  CTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFS 994

Query: 206  SIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIG 27
            +IAAPL EL++++  F W  AQ +AF+ LK KL +AP+L LPDFNK FE+ECD SGIG+G
Sbjct: 995  TIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLG 1054

Query: 26   AILMQERK 3
             +L+QE K
Sbjct: 1055 GVLLQEGK 1062


>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
          Length = 960

 Score =  496 bits (1278), Expect = e-138
 Identities = 236/350 (67%), Positives = 284/350 (81%)
 Frame = -2

Query: 1052 MEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRTSPEETKEIDRQVKELLEK 873
            ++E+ DVFP ++PSGLPPIRGIEHQIDF PGA +PNR AYR++ EETKE+ RQV+ELL K
Sbjct: 165  VKEYEDVFPNDVPSGLPPIRGIEHQIDFVPGATIPNRLAYRSNLEETKELQRQVEELLTK 224

Query: 872  KQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRFPISRLDDMLDELSGASVF 693
              +RES+  CA+ V+LVPKK+  W MC+DCRAIN I VKYR PI RLDDMLDEL G+ VF
Sbjct: 225  GHVRESMRPCAILVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCVF 284

Query: 692  SKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTNAPSTFMRLMNHVLRDVIG 513
             KIDL+SGY Q+RM EGDEWKTAFK K+ LYEWLVMPFGLTNA STFMRLMNHVLR  IG
Sbjct: 285  IKIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNALSTFMRLMNHVLRAFIG 344

Query: 512  KYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFKCTFCMDEVIFLGFVVSSH 333
            ++VVVYFDDILVYS  +DEH+ HL  V  +LR  KLYANL KC+FCMD+V+FLG+VVS+ 
Sbjct: 345  RFVVVYFDDILVYSKNLDEHINHLHCVLAILRKEKLYANLKKCSFCMDKVVFLGYVVSAK 404

Query: 332  GVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFSSIAAPLTELSRKDRNFEW 153
            G+EVD  K+KAI+EW  PKS  +VRSFHGLA FY RFV DFS++AAPLTE+ +K   F+W
Sbjct: 405  GIEVDEEKLKAIKEWPTPKSITEVRSFHGLASFYFRFVKDFSTLAAPLTEIVKKSVGFKW 464

Query: 152  GKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIGAILMQERK 3
            G  Q+ AF  +K +LC AP+L LP+F+K FEIECD SGIGI  +LMQE++
Sbjct: 465  GSEQDRAFIEIKERLCGAPLLSLPNFSKTFEIECDASGIGIATVLMQEKR 514


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  495 bits (1274), Expect = e-137
 Identities = 240/368 (65%), Positives = 287/368 (77%)
 Frame = -2

Query: 1106 FKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRT 927
            F   DTP + +PP +  L++E+ D+FP E+P GLPPIRGIEHQID  PGA LPNR  YRT
Sbjct: 696  FPIEDTP-ISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 754

Query: 926  SPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRF 747
            +PEETKEI RQV+ELL+K  +RESL  C+VPV+LVPKK+  W MC+DCRAIN I ++YR 
Sbjct: 755  NPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRH 814

Query: 746  PISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTN 567
            PI RLDDMLDELSG+ VFSKIDLRSGY Q+RM  GDEWKTAFK K  LYEWLVMPFGLTN
Sbjct: 815  PIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTN 874

Query: 566  APSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFK 387
            APSTFMRLMN VLR  IG++VVVYFDDIL+YS  +++H  HLR VF  LRD +L+ NL K
Sbjct: 875  APSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEK 934

Query: 386  CTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFS 207
            CTFC D V FL +VV+  G+EVD+ KV+AI  W +P +   VRSF GLAGFY RFV DFS
Sbjct: 935  CTFCTDRVSFLSYVVTPQGIEVDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFS 994

Query: 206  SIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIG 27
            +IAAPL EL++++  F W  AQ +AF+ LK KL +AP+L LPDFNK FE ECD SGIG+G
Sbjct: 995  TIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDASGIGLG 1054

Query: 26   AILMQERK 3
             +L+QE K
Sbjct: 1055 GVLLQEGK 1062


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  494 bits (1272), Expect = e-137
 Identities = 240/370 (64%), Positives = 287/370 (77%)
 Frame = -2

Query: 1112 VNFKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAY 933
            V F   D P   +PP +  +++EF DVFP ++P GLPPIRGIEHQID  PGA LPNR  Y
Sbjct: 725  VLFSFEDMPSS-LPPAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPY 783

Query: 932  RTSPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKY 753
            RT+PEETKEI RQV+ELL+K  IRESL  CAVP+ILVPKK+    MC+DCR IN I ++ 
Sbjct: 784  RTNPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRX 843

Query: 752  RFPISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGL 573
            R PI RLDDMLDELSG+ +FSK+DLRSGY Q+RM  GDEWKTAFK K  LYEWLVMPFGL
Sbjct: 844  RHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGL 903

Query: 572  TNAPSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANL 393
            TNAPSTFMRLMN VLR  IG++VVVYFDDIL+YS  +++H+ HLR VF  LRD +L+ NL
Sbjct: 904  TNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNL 963

Query: 392  FKCTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSD 213
             KCTFC D V FLG+VV+  G+EVD+ K++AIE W  PK+   VRSF G AGFY RFV D
Sbjct: 964  GKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRFVRD 1023

Query: 212  FSSIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIG 33
            FS+IAAPL EL++KD  + WG AQE AF +LK KL +AP+L LPDFNK FE+ECD SGIG
Sbjct: 1024 FSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIG 1083

Query: 32   IGAILMQERK 3
            +G +L+Q+ K
Sbjct: 1084 LGGVLLQDGK 1093


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  493 bits (1270), Expect = e-137
 Identities = 239/368 (64%), Positives = 287/368 (77%)
 Frame = -2

Query: 1106 FKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRT 927
            F   DTP + +PP +  L++E+ D+FP E+P GLPPIRGIEHQID  PGA LPNR  YRT
Sbjct: 592  FPIEDTP-ISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 650

Query: 926  SPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRF 747
            +PEETKEI RQV+ELL+K  +RESL  C+VPV+LVPKK+  W MC+DCRAIN I ++YR 
Sbjct: 651  NPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRH 710

Query: 746  PISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTN 567
            PI RLDDMLDELSG+ VFSKIDL SGY Q+RM  GDEWKTAFK K  LYEWLVMPFGLTN
Sbjct: 711  PIPRLDDMLDELSGSLVFSKIDLCSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTN 770

Query: 566  APSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFK 387
            APSTFMRLMN VLR  IG++VVVYFDDIL+YS  +++H  HLR VF  LRD +L+ NL K
Sbjct: 771  APSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEK 830

Query: 386  CTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFS 207
            CTFC D V FLG+VV+  G+EVD+ KV+AI  W +P +   VRSF GLAGFY  FV DFS
Sbjct: 831  CTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRLFVKDFS 890

Query: 206  SIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIG 27
            +IAAPL EL++++  F W  AQ +AF+ LK KL +AP+L LPDFNK FE+ECD SGIG+G
Sbjct: 891  TIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLG 950

Query: 26   AILMQERK 3
             +L+QE K
Sbjct: 951  GVLLQEGK 958


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  493 bits (1270), Expect = e-137
 Identities = 236/358 (65%), Positives = 282/358 (78%)
 Frame = -2

Query: 1076 IPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRTSPEETKEIDR 897
            +PP +  +++E++DVFP E+P GLP +RGIEHQID  PGA LPNR  YRT+PEETKEI R
Sbjct: 771  LPPAVANILQEYSDVFPKEVPPGLPLVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQR 830

Query: 896  QVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRFPISRLDDMLD 717
            QV ELL+K  +RESL  CAVPVILVPKK+  W MC+DCRAIN   ++YR PI RLDDMLD
Sbjct: 831  QVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNNTIRYRHPIPRLDDMLD 890

Query: 716  ELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTNAPSTFMRLMN 537
            ELSG+ VFSK+DLRSGY Q+RM  GDEWKT FK K  LYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 891  ELSGSIVFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMN 950

Query: 536  HVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFKCTFCMDEVIF 357
             VLR  IGK+VVVYFDDIL+YS  + EH  HLR VF  LRD +L+ NL KCTFC D V F
Sbjct: 951  EVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLKKCTFCTDRVSF 1010

Query: 356  LGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFSSIAAPLTELS 177
            LG+VV+  G+EVD+ KV+AI+ W  PK+ + VRSF GLAGFY RFV DFS+IAAPL  L+
Sbjct: 1011 LGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALT 1070

Query: 176  RKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIGAILMQERK 3
            +K   F WG +QE+AF++LK KL +AP+L LPDFNK FE+ECD +GIG+G + +QE K
Sbjct: 1071 KKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDANGIGLGGVFLQEGK 1128



 Score =  146 bits (369), Expect = 1e-32
 Identities = 81/212 (38%), Positives = 115/212 (54%)
 Frame = -2

Query: 641  DEWKTAFKMKHVLYEWLVMPFGLTNAPSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCV 462
            D+ KT F   +  Y +  M FGL NAP++F R M  +  D+I   + ++ DD  VY    
Sbjct: 2013 DQSKTTFTCPYGTYAYRRMSFGLCNAPASFQRCMMSIFSDMIEDIMEIFMDDFSVYGKTF 2072

Query: 461  DEHVRHLRHVFVLLRDVKLYANLFKCTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSM 282
               +++L  V    ++  L  N  KC F + E I LG  VS  G+E DR K+  I++   
Sbjct: 2073 GHCLQNLDKVLQRCQEKDLVLNWEKCHFMVREGIVLGHRVSERGIEFDRAKIDVIDQLPP 2132

Query: 281  PKSCADVRSFHGLAGFYHRFVSDFSSIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCN 102
            P +   +RSF G A FY RF+ DFS+IA PLT L  KD  FE+  A   +F +LK  L +
Sbjct: 2133 PVNIKGIRSFLGHADFYRRFIKDFSTIARPLTNLLAKDTPFEFDDACLKSFEILKKALDS 2192

Query: 101  APVLVLPDFNKMFEIECDTSGIGIGAILMQER 6
             P++  PD+   FEI CD S   +GA+L Q +
Sbjct: 2193 GPIIQPPDWTLPFEIMCDASDFAVGAVLGQTK 2224


>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
          Length = 1170

 Score =  493 bits (1270), Expect = e-137
 Identities = 238/368 (64%), Positives = 287/368 (77%)
 Frame = -2

Query: 1106 FKANDTPDVVIPPVLQPLMEEFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRT 927
            F   DTP + +PP +  L++E+ D+FP E+P GLPPIRGIEHQID  PGA LPNR  YRT
Sbjct: 329  FPIEDTP-ISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 387

Query: 926  SPEETKEIDRQVKELLEKKQIRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRF 747
            +PEETKEI RQ++ELL+K  +RESL  C+VPV+LVPKK+  W MC+DCRAIN I ++YR 
Sbjct: 388  NPEETKEIQRQMQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRH 447

Query: 746  PISRLDDMLDELSGASVFSKIDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTN 567
            PI RLDDMLDELSG+ VF KIDLRSGY Q+RM  GDEWKTAFK K  LYEWLVMPFGLTN
Sbjct: 448  PIPRLDDMLDELSGSLVFYKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTN 507

Query: 566  APSTFMRLMNHVLRDVIGKYVVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFK 387
            APSTFMRLMN VLR  IG++VVVYFDDIL+YS  +++H  HLR VF  LRD +L+ NL K
Sbjct: 508  APSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEK 567

Query: 386  CTFCMDEVIFLGFVVSSHGVEVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFS 207
            CTFC D V FLG+VV+  G+EVD+ KV+AI  W +P +   VRSF GLAGFY RFV DFS
Sbjct: 568  CTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFS 627

Query: 206  SIAAPLTELSRKDRNFEWGKAQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIG 27
            +IAAPL EL++++  F W  AQ +AF+ LK KL +AP+L LPDFNK  E+ECD SGIG+G
Sbjct: 628  TIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTLELECDASGIGLG 687

Query: 26   AILMQERK 3
             +L+QE K
Sbjct: 688  GVLLQEGK 695


>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
          Length = 1667

 Score =  492 bits (1266), Expect = e-136
 Identities = 237/348 (68%), Positives = 279/348 (80%)
 Frame = -2

Query: 1046 EFNDVFPTEIPSGLPPIRGIEHQIDFQPGAVLPNRPAYRTSPEETKEIDRQVKELLEKKQ 867
            E++DVFP E+P GLPP+RGIEHQID  PGA LPNR  YRT+PEETKEI RQV ELL+K  
Sbjct: 610  EYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGY 669

Query: 866  IRESLLLCAVPVILVPKKNNEWHMCMDCRAIN*IPVKYRFPISRLDDMLDELSGASVFSK 687
            +RESL  CAV VILVPKK+  W MC+DCRAIN I ++YR PI RLDDMLDELSG+ VFSK
Sbjct: 670  VRESLSPCAVLVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSK 729

Query: 686  IDLRSGYFQVRMSEGDEWKTAFKMKHVLYEWLVMPFGLTNAPSTFMRLMNHVLRDVIGKY 507
            +DLRSGY Q+RM+ GDEWKTAFK K  LYEWLVMPFGLTNAP+TFMRLMN VLR  IGK+
Sbjct: 730  VDLRSGYHQIRMNLGDEWKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNEVLRPFIGKF 789

Query: 506  VVVYFDDILVYSTCVDEHVRHLRHVFVLLRDVKLYANLFKCTFCMDEVIFLGFVVSSHGV 327
            VVVYFDDIL+YS  + EH  HLR VF  LRD +L+ NL KCTFC D V FLG+VV+  G+
Sbjct: 790  VVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGI 849

Query: 326  EVDRTKVKAIEEWSMPKSCADVRSFHGLAGFYHRFVSDFSSIAAPLTELSRKDRNFEWGK 147
            EVD+ KV+AI+ W  PK+ + VRSF GLAGFY RFV DFS+IAAPL  L++K   F WG 
Sbjct: 850  EVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGT 909

Query: 146  AQEHAFNLLKSKLCNAPVLVLPDFNKMFEIECDTSGIGIGAILMQERK 3
            +QE+AF++LK KL +AP+L LPDFNK FE+ECD SGIG+G +L+QE K
Sbjct: 910  SQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGK 957