BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00007753
         (1634 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...   835   0.0  
gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlise...   723   0.0  
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   676   0.0  
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   667   0.0  
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   652   0.0  
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   651   0.0  
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   650   0.0  
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   642   0.0  
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              640   0.0  
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   640   0.0  
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put...   633   e-179
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...   633   e-179
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   625   e-176
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...   611   e-172
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   582   e-163
ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutr...   581   e-163
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...   579   e-162
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...   579   e-162
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...   577   e-162
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   576   e-162

>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score =  835 bits (2158), Expect = 0.0
 Identities = 418/557 (75%), Positives = 468/557 (84%), Gaps = 13/557 (2%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 182
            VI +DGTVRNMCSNSI+QFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLD    
Sbjct: 792  VICHDGTVRNMCSNSIIQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDSSSS 851

Query: 183  XXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLKE 362
                W+MMKEILLCGV FKND  DRRV+LYL+ CDCGRKHCQE+AAL VKN LK+VSLK+
Sbjct: 852  SNSSWEMMKEILLCGVSFKNDITDRRVILYLSHCDCGRKHCQESAALVVKNQLKKVSLKD 911

Query: 363  AAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRKK 542
             A+EFLIEYRSQ VHES++ + GL VGHIHLNKTQL+QSNIS+ DVLEKC++TI L  KK
Sbjct: 912  TAMEFLIEYRSQSVHESHETSHGL-VGHIHLNKTQLVQSNISMDDVLEKCRETIILQHKK 970

Query: 543  KKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPV 722
            KKVGNLFK+++LS S+CCSFCQSSKSK T+VPCIQFFWQGA D LLERAS  LADTVCPV
Sbjct: 971  KKVGNLFKKVELSVSDCCSFCQSSKSKLTDVPCIQFFWQGAPDNLLERASYFLADTVCPV 1030

Query: 723  LLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRVV 902
            LLQT+IKGDPR+STAN++W+SPDT TWIRSP KSP GELA+DI LEKEAV KSGDAWRVV
Sbjct: 1031 LLQTIIKGDPRISTANVVWLSPDTPTWIRSPSKSPIGELALDIVLEKEAVRKSGDAWRVV 1090

Query: 903  MDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLLL 1082
            MDSCLPV HLID+QRSIPY IKQ++ LLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLLL
Sbjct: 1091 MDSCLPVMHLIDTQRSIPYGIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLLL 1150

Query: 1083 GNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIVG 1262
            GNSMTCAGTLIGFN+GGIK+LS+ L VQVPFMNATLFTPRKCFE+AAEKC VDNLSSIV 
Sbjct: 1151 GNSMTCAGTLIGFNSGGIKALSRLLGVQVPFMNATLFTPRKCFEKAAEKCYVDNLSSIVA 1210

Query: 1263 SCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAEIX 1442
            SCAWGKHVSVGTGSPFEI+W T+   +  D+EIDVY+FL MVNSS LEDAGTSCLGA+I 
Sbjct: 1211 SCAWGKHVSVGTGSPFEILWDTRKAELSPDKEIDVYDFLHMVNSSKLEDAGTSCLGADIE 1270

Query: 1443 XXXXXXXXXFELSPVRDSGAEKPTFEDIID---DSNGIS----KEDDGGWSSFGTKA--- 1592
                      +LSPVR+ G+EKPTFE  ++   + +G S    KE +  WSS+G K    
Sbjct: 1271 DLGQEDYMDLDLSPVREPGSEKPTFECEVEFGLNGDGFSKEGGKESEDSWSSWGKKVDTE 1330

Query: 1593 DGWNSN---SAWGKKVD 1634
            D W      + WGKKVD
Sbjct: 1331 DDWTKKAELTTWGKKVD 1347


>gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlisea aurea]
          Length = 1379

 Score =  723 bits (1865), Expect = 0.0
 Identities = 356/554 (64%), Positives = 431/554 (77%), Gaps = 10/554 (1%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 182
            VI YDGTVRNMCSNSI+QFEY  N+ +I +EFCAGDPVGVLAAT+MSNPAYKAVLD    
Sbjct: 792  VICYDGTVRNMCSNSIIQFEYSANSTDIVTEFCAGDPVGVLAATSMSNPAYKAVLDSSSS 851

Query: 183  XXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLKE 362
                W MMK+ILLC   FKND +DRRV+LYL  C+CGRKHCQET AL V+NHLK+V+LK+
Sbjct: 852  SNSAWQMMKDILLCATSFKNDISDRRVILYLTDCECGRKHCQETGALVVQNHLKKVTLKD 911

Query: 363  AAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRKK 542
             A++FLIEY  QL     +G  GL VGHIHL++ +L++SN++   + E C +TINL  KK
Sbjct: 912  TAVDFLIEYFHQLCQSLEEGYPGL-VGHIHLSEMELIRSNVNKDRIFEGCLETINLYEKK 970

Query: 543  KKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPV 722
            KKVGNLFK+I LSYS+ C+FC SSKSK T VPC+QF W GA D + ++ S +L+DTVCP 
Sbjct: 971  KKVGNLFKKIKLSYSDHCTFCASSKSKRTEVPCVQFLWNGAIDDI-DKVSHLLSDTVCPA 1029

Query: 723  LLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRVV 902
            LLQTVIKGDPRVSTA ++W+SP TATWIRSP K+  GE+A+++  EKEA   SGDAWRV 
Sbjct: 1030 LLQTVIKGDPRVSTAEIVWVSPGTATWIRSPSKNLNGEMAIEVVFEKEAARHSGDAWRVA 1089

Query: 903  MDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLLL 1082
            MDSC+PV HLID++RSIPYAIKQ++ LLGISCAFEQAVQRLSTSVTMVTKGVLKDH+LLL
Sbjct: 1090 MDSCVPVMHLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHILLL 1149

Query: 1083 GNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIVG 1262
            GN+MTCAGTLIGFN+GGIK+LS+SLD+ VPFM ATLFTPRKCFERAAEKC+VD L+S+VG
Sbjct: 1150 GNNMTCAGTLIGFNSGGIKALSQSLDLHVPFMTATLFTPRKCFERAAEKCHVDKLTSVVG 1209

Query: 1263 SCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAEIX 1442
            SCAWGKHVSVGTGSPFEI+W T+  ++  D+E+DVY FL +VN S   D GTSC+G EI 
Sbjct: 1210 SCAWGKHVSVGTGSPFEILWDTRKTDLNPDKELDVYGFLHLVNGSVPLDMGTSCIGTEI- 1268

Query: 1443 XXXXXXXXXFELSPVRDSGAEKPTFEDIID---DSNGISKEDDGGWSSFGT----KADGW 1601
                     FELSP R+ G EKPTF+D  +   +SN    E  G WSS+G       + W
Sbjct: 1269 EDLDQELMDFELSPEREPGLEKPTFDDEHEFGMNSNEGVTEVKGSWSSWGNVVAPDTNDW 1328

Query: 1602 NS---NSAWGKKVD 1634
            ++   ++ WG  V+
Sbjct: 1329 SNKVESTGWGSAVN 1342


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score =  676 bits (1745), Expect = 0.0
 Identities = 353/572 (61%), Positives = 422/572 (73%), Gaps = 28/572 (4%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNT-ANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI YDGTVRN+ SNSI+QFEYG +  +N+ SEFCAGDPVGVLAATAMSNPAYKAVLD   
Sbjct: 794  VICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAVLDSSP 853

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W+MMKEILLCGV FKND +DRRV+LYLN C C R +C+E AA  VKNHL +V LK
Sbjct: 854  SSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLK 913

Query: 360  EAAIEFLIEYRS-QLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSR 536
            +AA EFLIEY   Q  +E+ +  +GL +GHI LN+ QL    IS+ +V E+CQ+ I+  +
Sbjct: 914  DAADEFLIEYAGRQAGYENSETGTGL-IGHIRLNQGQLENLGISVLEVHERCQENISSFQ 972

Query: 537  KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 716
            KKKK+GNLFKRI LS SE CSFC +S SK  N PC++F W  ASD  LER S ILAD +C
Sbjct: 973  KKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHILADMIC 1032

Query: 717  PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 896
            P+LL TVIKGDPRVS+AN+ WISPDT +WIRSP KS +GELA+DI LEKEAV + GDAWR
Sbjct: 1033 PILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKQRGDAWR 1092

Query: 897  VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1076
            ++MDSCLPV HLID+ RSIPYAIKQ++ L+GISCAFEQAV+RLSTSVTMVTKGVLKDHL+
Sbjct: 1093 ILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVKRLSTSVTMVTKGVLKDHLV 1152

Query: 1077 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 1256
            LL NSMTCAG L+GFN GGIK+LS+SL+VQ+PF  ATLFTPRKCFERAAEKC+VD+LSSI
Sbjct: 1153 LLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSI 1212

Query: 1257 VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMV-NSSTLEDAGTSCLGA 1433
            V SC+WGKHV+VGTGS FE++  T++V   + +  DVY+FL +V N+S  E  GTSCLGA
Sbjct: 1213 VASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGA 1272

Query: 1434 EIXXXXXXXXXXFELSPVRDSGAEKPTFED------------------IIDDSNGISKED 1559
            EI            LSP RDSG+E PTFED                    + ++  S + 
Sbjct: 1273 EIDELEEDEDMGLYLSPNRDSGSEMPTFEDRAEFDYNENLDEGKPSGSAWEKASSGSVKS 1332

Query: 1560 DGGWSSFGTKADG-------WNSNSAWGKKVD 1634
             G W   G   +G        +S SAWGKKVD
Sbjct: 1333 GGSWDMAGKTQNGAEEGVNQSDSWSAWGKKVD 1364


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  667 bits (1720), Expect = 0.0
 Identities = 350/572 (61%), Positives = 417/572 (72%), Gaps = 28/572 (4%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNT-ANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI YDGTVRN+ SNSI+QFEYG +  +N+ SEFCAGDPVGVLAATAMSNPAYKA LD   
Sbjct: 345  VICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAXLDSSP 404

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W+MMKEILLCGV FKND +DRRV+LYLN C C R +C+E AA  VKNHL +V LK
Sbjct: 405  SSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLK 464

Query: 360  EAAIEFLIEYRS-QLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSR 536
            +AA EFLIEY   Q  +E+ +  +GL +GHI LN+ QL    IS+ +V E+CQ+ I+  R
Sbjct: 465  DAADEFLIEYAGRQAGYENSETGTGL-IGHIRLNQGQLENLGISVLEVHERCQENISSFR 523

Query: 537  KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 716
             KKK+GNLFKRI LS SE CSFC +S SK  N PC++F W  ASD  LER S ILAD + 
Sbjct: 524  XKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHILADMIX 583

Query: 717  PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 896
            P+LL TVIKGDPRVS+AN+ WISPDT +WIRSP KS +GELA+DI LEKEAV   GDAWR
Sbjct: 584  PILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKXRGDAWR 643

Query: 897  VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1076
             +MDSCLPV HLID+ RSIPYAIKQ++ L+GISCAFEQAV RLSTSVTMVTKGVLKDHL+
Sbjct: 644  XLMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVXRLSTSVTMVTKGVLKDHLV 703

Query: 1077 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 1256
            LL NSMTCAG L+GFN GGIK+LS+SL+VQ+PF  ATLFTPRKCFERAAEKC+VD+LSSI
Sbjct: 704  LLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSI 763

Query: 1257 VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMV-NSSTLEDAGTSCLGA 1433
            V SC+WGKHV+VGTGS FE++  T++V   + +  DVY+FL +V N+S  E  GTSCLGA
Sbjct: 764  VASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGA 823

Query: 1434 EIXXXXXXXXXXFELSPVRDSGAEKPTFED------------------IIDDSNGISKED 1559
            EI            LSP RDSG+E PTFED                    ++++  S + 
Sbjct: 824  EIDELEEDEDMGLYLSPNRDSGSEMPTFEDRAEFDYNENLDEGKPSGSAWEEASSGSVKS 883

Query: 1560 DGGWSSFGTKADG-------WNSNSAWGKKVD 1634
             G W   G   +G        +S S+WGKKVD
Sbjct: 884  GGSWDMAGKTQNGAEEGVNQSDSWSSWGKKVD 915


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  652 bits (1681), Expect = 0.0
 Identities = 330/561 (58%), Positives = 412/561 (73%), Gaps = 17/561 (3%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 182
            VI YDGTVRN+ SNS++QFEYGV      + F AGDPVGVLAATAMSNPAYKAVLD    
Sbjct: 594  VICYDGTVRNISSNSVIQFEYGVGGMQSQNLFPAGDPVGVLAATAMSNPAYKAVLDSSPN 653

Query: 183  XXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLKE 362
                WDMMKEIL C   F+ND  DRRV+LYLN C CGRK+CQE A+  VKNHLK+VSL++
Sbjct: 654  SNSSWDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKKVSLRD 713

Query: 363  AAIEFLIEY-RSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRK 539
            AAIE  IEY R +L  ES + ++GL VGHIHLN   L  S I + D+L+KC++ +NL RK
Sbjct: 714  AAIELAIEYKRPKLEPESCEIDAGL-VGHIHLNSGLLKASGIGMHDILQKCEEQVNLLRK 772

Query: 540  KKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCP 719
            KKK G  FKRI LS S+CC F   S SKWT++PC++FFWQ  +D  LER   I+AD +CP
Sbjct: 773  KKKYGYHFKRILLSVSDCCFF-NHSDSKWTDMPCLKFFWQDMTDTDLERTKHIMADMICP 831

Query: 720  VLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRV 899
            VLL T+IKGDPR+ST N+IWI+P T TW++SPC S KGELAV++ LEKEAV  +GDAWR+
Sbjct: 832  VLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELAVEVALEKEAVRLTGDAWRI 891

Query: 900  VMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLL 1079
            V+D CLPVFHLID++RSIPYAIKQI+ L GISCAF+QAVQRLSTSVTMVTKGVLK+HLLL
Sbjct: 892  VLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEHLLL 951

Query: 1080 LGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIV 1259
            L +SMTCAG L+GFNT GIK+L ++L+VQVPF  ATL+TPRKCFERA+EKC+VD L+SIV
Sbjct: 952  LASSMTCAGNLVGFNTSGIKALCRALNVQVPFTEATLYTPRKCFERASEKCHVDTLASIV 1011

Query: 1260 GSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAEI 1439
            GSC+WGK VS+GTG+ F+++W TK +  M D+  DVYNFL +V+S+  E+  +  LG +I
Sbjct: 1012 GSCSWGKRVSIGTGAKFDLLWETKEIE-MADKPTDVYNFLHLVSSANEEEVDSGGLGEDI 1070

Query: 1440 XXXXXXXXXXFELSPVRDSGAEKPTFEDIID---DSNGISKEDDGGWSSFGTKADGWNSN 1610
                        LSP +++   K  FE+ ++   DS+ I+  D+  W +F +   GWN+N
Sbjct: 1071 ESFEKDVYMEPALSPEQEN---KAVFEETLEIGVDSD-ITGADESSWDAFPSSGTGWNAN 1126

Query: 1611 -------------SAWGKKVD 1634
                         S+WG K D
Sbjct: 1127 KIDTGSGSAEGGWSSWGSKKD 1147


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  651 bits (1679), Expect = 0.0
 Identities = 329/542 (60%), Positives = 406/542 (74%), Gaps = 3/542 (0%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIA-SEFCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI YDGTVRN+ SNSI+QFEYGV     + S F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 800  VICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAATAMSNPAYKAVLDSTP 859

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 WDMMKEILLC VGFKND ADRRV+LYLN C CGR +CQE AA  VKNHL++VSLK
Sbjct: 860  SSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAAYLVKNHLEKVSLK 919

Query: 360  EAAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRK 539
            + A  F+IEY+SQ + ES+  ++GL VGH+HL+K +L   NI+   +LEKCQ+T+N  RK
Sbjct: 920  DIAKCFMIEYKSQQIPESFGSDAGL-VGHVHLDKRKLQDLNITAQVILEKCQETVNTFRK 978

Query: 540  KKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCP 719
            KKKVGNLFK+  L  SE CSF Q         PC+ FFWQGA DV LER S+ILAD +CP
Sbjct: 979  KKKVGNLFKKTILLVSESCSFQQCIDES----PCLMFFWQGADDVHLERTSNILADMICP 1034

Query: 720  VLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRV 899
            VLL+T+IKGD R+S AN+IW +P+T TWIR+P ++ KGELA+DI LEK  V KSGDAWR+
Sbjct: 1035 VLLETIIKGDHRISCANIIWATPETNTWIRNPSRTQKGELALDIVLEKSVVKKSGDAWRI 1094

Query: 900  VMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLL 1079
            V+DSCLPV HLI++ RSIPYAIKQ++ LLG+SCAF+ AVQRLS SVTMV KGVLK+HL+L
Sbjct: 1095 VLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSVTMVAKGVLKEHLIL 1154

Query: 1080 LGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIV 1259
            LGNSMTCAG+LIGF TGG K+LS+SLD+QVPF  ATLFTPRKCFE+AAEKC+ D+LSSIV
Sbjct: 1155 LGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKAAEKCHTDSLSSIV 1214

Query: 1260 GSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSST-LEDAGTSCLGAE 1436
             SCAWGKHV+VGTGS F+++W TK   +  +  +DVY+FL MV S+   E++ T+CLGAE
Sbjct: 1215 ASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFLNMVRSTAGGEESVTACLGAE 1274

Query: 1437 IXXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGISKED-DGGWSSFGTKADGWNSNS 1613
            +          + LSP  +S ++KPTFED  +  + +  +  +  W    +  D   S+ 
Sbjct: 1275 V-DDLMLEDEDWNLSPEHNSSSDKPTFEDSAEFQDFLGNQPAESNWEKISSLKDRSRSSG 1333

Query: 1614 AW 1619
             W
Sbjct: 1334 NW 1335


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  650 bits (1676), Expect = 0.0
 Identities = 325/567 (57%), Positives = 406/567 (71%), Gaps = 23/567 (4%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 182
            VI YDGTVRN+CSNSI+QF+Y VN     S F AG+PVGVLAATAMSNPAYKAVLD    
Sbjct: 794  VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 853

Query: 183  XXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLKE 362
                W++MKEILLC V F ND  DRRV+LYLN C CGRK+CQE AA  VKN LKRVSLK+
Sbjct: 854  SNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD 913

Query: 363  AAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINL---S 533
            AA+EFLIEY+   +    +G    LVGHIHLNK  L    IS+ D+L KCQ+T+      
Sbjct: 914  AAVEFLIEYKKPEIISDDEG----LVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKK 969

Query: 534  RKKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTV 713
            +K KKV   FK   LS SECCSF QS   K +N+PC+ F  +GASD  L++ S +LA+ +
Sbjct: 970  KKMKKVVQFFKNTSLSVSECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMI 1029

Query: 714  CPVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 893
             PVLL+T+IKGDPR+ +AN+IWISPDT  WIR+P K+ KGELA+D+ LEK  V +SGDAW
Sbjct: 1030 YPVLLETIIKGDPRIYSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAW 1089

Query: 894  RVVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHL 1073
            R V+DSCLPVFHLID++RS+PYAIKQ++ LLG+SCAFEQAVQRLS SVTMV KGVLK+HL
Sbjct: 1090 RTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHL 1149

Query: 1074 LLLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSS 1253
            +LL NSMTCAG L+GFN+GG K+LS+SL+VQVPF  ATLFTPRKCFE+AAEKC+ DNLSS
Sbjct: 1150 ILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFTPRKCFEKAAEKCHTDNLSS 1209

Query: 1254 IVGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSST-LEDAGTSCLG 1430
            +V +C+WGKHV+VGTGS F+++W T++     D+ +DVY+FL MV SST +E++ T CLG
Sbjct: 1210 VVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEESDTGCLG 1269

Query: 1431 AEIXXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGIS---------------KEDDG 1565
             E+          + LSP  +  ++KP FED+++D + +                K  + 
Sbjct: 1270 EEV--DGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSED 1327

Query: 1566 GWSSFGTK----ADGWNSNSAWGKKVD 1634
             W   GT     + GW +  AWGK  D
Sbjct: 1328 KWEKLGTSLEKPSSGWRTEGAWGKSSD 1354


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  642 bits (1656), Expect = 0.0
 Identities = 323/567 (56%), Positives = 403/567 (71%), Gaps = 23/567 (4%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 182
            VI YDGTVRN+CSNSI+QF+Y VN     S F AG+PVGVLAATAMSNPAYKAVLD    
Sbjct: 795  VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 854

Query: 183  XXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLKE 362
                W++MKEILLC V F ND  DRRV+LYLN C CGRK+CQE AA  VKN LKRVSLK+
Sbjct: 855  SNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD 914

Query: 363  AAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINL---S 533
            AA+EFLIEY+   +    +G    LVGHIHLNK  L    IS+ D+L KCQ+T+      
Sbjct: 915  AAVEFLIEYKKPEIISDDEG----LVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKK 970

Query: 534  RKKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTV 713
            +K KKV   FK   LS SECCSF QS   K +N+PC+ F  +GASD  L++ S +LA+ +
Sbjct: 971  KKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMI 1030

Query: 714  CPVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 893
             PVLL+T+IKGDPR+ +AN+IWISPDT  WIR+P K+ KGELA+D+ LEK  V +SGDAW
Sbjct: 1031 YPVLLETIIKGDPRICSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAW 1090

Query: 894  RVVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHL 1073
            R V+DSCLPVFHLID++RS+PYAIKQ++ LLG+SCAFEQAVQRLS SVTMV KGVLK+HL
Sbjct: 1091 RTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHL 1150

Query: 1074 LLLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSS 1253
            +LL NSMTCAG L+GFN+GG K+LS+SL+VQVPF  ATLF PRKCFE+AAEK + DNLSS
Sbjct: 1151 ILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSS 1210

Query: 1254 IVGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSST-LEDAGTSCLG 1430
            +V +C+WGKHV+VGTGS F+++W T++     D+ +DVY+FL MV SST +E+  T CLG
Sbjct: 1211 VVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLG 1270

Query: 1431 AEIXXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGIS---------------KEDDG 1565
             E+          + LSP  +  ++KP FED+++D + +                K  + 
Sbjct: 1271 EEV--DGLEDEFDWSLSPEHNLCSDKPIFEDLVEDQSWLENKQENENWDSEADCRKSSED 1328

Query: 1566 GWSSFGTK----ADGWNSNSAWGKKVD 1634
             W   GT     + GW +  AWGK  D
Sbjct: 1329 KWEKLGTSLEKPSSGWRTEGAWGKSSD 1355


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  640 bits (1652), Expect = 0.0
 Identities = 329/583 (56%), Positives = 404/583 (69%), Gaps = 43/583 (7%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFC-AGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI YDGTVRN+CSNSI+QFEYGV        F  AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 854  VICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSSP 913

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W++MKEILLC V FKND  DRRV+LYLN CDCGRK+C+E AA  VKN LK+ SLK
Sbjct: 914  SSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLK 973

Query: 360  EAAIEFLIEYRSQ-LVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSR 536
            + A+EF+IEY  Q  V  S +  +GL VGHIHLNK  L   N+S+ +V +KC++TIN  R
Sbjct: 974  DTAVEFMIEYVKQHAVSGSSEPGTGL-VGHIHLNKLLLQDLNVSMQEVCQKCEETINSFR 1032

Query: 537  KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 716
            KKK VG  FK+I LS+ ECC+F  S +SK +++PC+ FFWQG  D  LE+   ILA  +C
Sbjct: 1033 KKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQILHILAHKIC 1092

Query: 717  PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 896
            PVLLQT+IKGD RV T N+IWISPDT TWIR+PCKS KGELA+DI LEK AV + GDAWR
Sbjct: 1093 PVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWR 1152

Query: 897  VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1076
            +V+D+CLPV HLID++RSIPYAIKQ++ LLGISCAF+QAVQRLS SVTMV KGVLK+HL+
Sbjct: 1153 IVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLI 1212

Query: 1077 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 1256
            LL NSMTCAG LIGFN+GG K+LS++L++QVPF  ATLFTPRKCFE+A+EKC+ D+LSSI
Sbjct: 1213 LLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSI 1272

Query: 1257 VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTL-EDAGTSCLGA 1433
            V SC+WGKHV+VGTGS F+++W TK +    D  ID+Y+FL +V S +  ++  T+CLGA
Sbjct: 1273 VASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGA 1332

Query: 1434 EI-XXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGISKEDDG--------------- 1565
            E+             +SP   S  EKP FED  +  N       G               
Sbjct: 1333 EVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGGDWAVNQNKETTA 1392

Query: 1566 ------GWSSFGT------------------KADGWNSNSAWG 1622
                   WSS+GT                  ++ GW+    WG
Sbjct: 1393 STLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWG 1435


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  640 bits (1652), Expect = 0.0
 Identities = 329/583 (56%), Positives = 404/583 (69%), Gaps = 43/583 (7%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFC-AGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI YDGTVRN+CSNSI+QFEYGV        F  AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 794  VICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSSP 853

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W++MKEILLC V FKND  DRRV+LYLN CDCGRK+C+E AA  VKN LK+ SLK
Sbjct: 854  SSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLK 913

Query: 360  EAAIEFLIEYRSQ-LVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSR 536
            + A+EF+IEY  Q  V  S +  +GL VGHIHLNK  L   N+S+ +V +KC++TIN  R
Sbjct: 914  DTAVEFMIEYVKQHAVSGSSEPGTGL-VGHIHLNKLLLQDLNVSMQEVCQKCEETINSFR 972

Query: 537  KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 716
            KKK VG  FK+I LS+ ECC+F  S +SK +++PC+ FFWQG  D  LE+   ILA  +C
Sbjct: 973  KKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQILHILAHKIC 1032

Query: 717  PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 896
            PVLLQT+IKGD RV T N+IWISPDT TWIR+PCKS KGELA+DI LEK AV + GDAWR
Sbjct: 1033 PVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWR 1092

Query: 897  VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1076
            +V+D+CLPV HLID++RSIPYAIKQ++ LLGISCAF+QAVQRLS SVTMV KGVLK+HL+
Sbjct: 1093 IVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLI 1152

Query: 1077 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 1256
            LL NSMTCAG LIGFN+GG K+LS++L++QVPF  ATLFTPRKCFE+A+EKC+ D+LSSI
Sbjct: 1153 LLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSI 1212

Query: 1257 VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTL-EDAGTSCLGA 1433
            V SC+WGKHV+VGTGS F+++W TK +    D  ID+Y+FL +V S +  ++  T+CLGA
Sbjct: 1213 VASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGA 1272

Query: 1434 EI-XXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGISKEDDG--------------- 1565
            E+             +SP   S  EKP FED  +  N       G               
Sbjct: 1273 EVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGGDWAVNQNKETTA 1332

Query: 1566 ------GWSSFGT------------------KADGWNSNSAWG 1622
                   WSS+GT                  ++ GW+    WG
Sbjct: 1333 STLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWG 1375


>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao] gi|508727914|gb|EOY19811.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            3 [Theobroma cacao]
          Length = 1675

 Score =  633 bits (1632), Expect = e-179
 Identities = 321/549 (58%), Positives = 396/549 (72%), Gaps = 5/549 (0%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 182
            VI YDGTVRN+ SNSI+QF+YG+N A    +F AG+PVGVLAATAMSNPAYKAVLD    
Sbjct: 795  VICYDGTVRNISSNSIIQFQYGLN-ARTKPQFPAGEPVGVLAATAMSNPAYKAVLDSTPS 853

Query: 183  XXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLKE 362
                W++MKEILLC V  KND  DRRV+LYL  CDCGRK+CQE AA  VKNHL++V LK+
Sbjct: 854  SNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLKD 913

Query: 363  AAIEFLIEYRSQ-LVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRK 539
             A+E + EY+ Q  V ES  G    LVGHI LNK  L + NIS+ +V  KCQ+TI   RK
Sbjct: 914  TAVELIFEYKQQQTVSESEAG----LVGHILLNKAVLKELNISMQEVHMKCQETIISFRK 969

Query: 540  KKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCP 719
            KKK  + FKR DL +SECCS  QS   KW ++ C+ FF +   D  L+     L D + P
Sbjct: 970  KKKTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIYP 1029

Query: 720  VLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRV 899
            VLL+TVIKGDPR+ +AN+IW+SPDT TWIRSP K+ KGELA+D+ LEK AV ++GDAWR 
Sbjct: 1030 VLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWRT 1089

Query: 900  VMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLL 1079
            V+D CLPV +LID+QRSIPYAIKQ++ LLGISCAFEQAVQRLSTSV+MV +GVLK+HL+L
Sbjct: 1090 VIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLKEHLIL 1149

Query: 1080 LGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIV 1259
            L NSMTCAG LIGFN+GG K+LS+SL++QVPF  ATLFTPRKCFERAAEKC+VD+LSSIV
Sbjct: 1150 LANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVDSLSSIV 1209

Query: 1260 GSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAEI 1439
             SC+WGKHV+VGTGS F+++W  K V       IDVYNFL M++S++   + T+CLG E+
Sbjct: 1210 ASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSSASGPSSTTTCLGEEV 1269

Query: 1440 -XXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGIS-KEDDGGWSSFGT--KADGWNS 1607
                       + LSP   +G +KP FED  D  N +  +  +  W    +  K   WN 
Sbjct: 1270 DDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAESSWEKGVSLDKVSSWNV 1329

Query: 1608 NSAWGKKVD 1634
            +SAW KK +
Sbjct: 1330 SSAWNKKAE 1338


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  633 bits (1632), Expect = e-179
 Identities = 321/549 (58%), Positives = 396/549 (72%), Gaps = 5/549 (0%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 182
            VI YDGTVRN+ SNSI+QF+YG+N A    +F AG+PVGVLAATAMSNPAYKAVLD    
Sbjct: 795  VICYDGTVRNISSNSIIQFQYGLN-ARTKPQFPAGEPVGVLAATAMSNPAYKAVLDSTPS 853

Query: 183  XXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLKE 362
                W++MKEILLC V  KND  DRRV+LYL  CDCGRK+CQE AA  VKNHL++V LK+
Sbjct: 854  SNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLKD 913

Query: 363  AAIEFLIEYRSQ-LVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRK 539
             A+E + EY+ Q  V ES  G    LVGHI LNK  L + NIS+ +V  KCQ+TI   RK
Sbjct: 914  TAVELIFEYKQQQTVSESEAG----LVGHILLNKAVLKELNISMQEVHMKCQETIISFRK 969

Query: 540  KKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCP 719
            KKK  + FKR DL +SECCS  QS   KW ++ C+ FF +   D  L+     L D + P
Sbjct: 970  KKKTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIYP 1029

Query: 720  VLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRV 899
            VLL+TVIKGDPR+ +AN+IW+SPDT TWIRSP K+ KGELA+D+ LEK AV ++GDAWR 
Sbjct: 1030 VLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWRT 1089

Query: 900  VMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLL 1079
            V+D CLPV +LID+QRSIPYAIKQ++ LLGISCAFEQAVQRLSTSV+MV +GVLK+HL+L
Sbjct: 1090 VIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLKEHLIL 1149

Query: 1080 LGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIV 1259
            L NSMTCAG LIGFN+GG K+LS+SL++QVPF  ATLFTPRKCFERAAEKC+VD+LSSIV
Sbjct: 1150 LANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVDSLSSIV 1209

Query: 1260 GSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAEI 1439
             SC+WGKHV+VGTGS F+++W  K V       IDVYNFL M++S++   + T+CLG E+
Sbjct: 1210 ASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSSASGPSSTTTCLGEEV 1269

Query: 1440 -XXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGIS-KEDDGGWSSFGT--KADGWNS 1607
                       + LSP   +G +KP FED  D  N +  +  +  W    +  K   WN 
Sbjct: 1270 DDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAESSWEKGVSLDKVSSWNV 1329

Query: 1608 NSAWGKKVD 1634
            +SAW KK +
Sbjct: 1330 SSAWNKKAE 1338


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  625 bits (1611), Expect = e-176
 Identities = 314/548 (57%), Positives = 401/548 (73%), Gaps = 8/548 (1%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASE-FCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI YDGTVRN+CSNSI+QFEYGV + +     F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 793  VICYDGTVRNVCSNSIIQFEYGVKSGSGPENLFPAGEPVGVLAATAMSNPAYKAVLDSTP 852

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 WD+MKEILLC V FKN+  DRRV+LYLN C CGRK+C+E AA  VKN LK+VSLK
Sbjct: 853  SSNSSWDLMKEILLCKVNFKNELIDRRVVLYLNDCGCGRKYCREHAAYLVKNRLKKVSLK 912

Query: 360  EAAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRK 539
            + A+EF+IEY+ +    S + +SGL VGH+HLN+  L + N+ +S++L+KC++TIN  R+
Sbjct: 913  DTAVEFMIEYQKERAAGSMEIDSGL-VGHVHLNEMLLRELNLGMSEILQKCEETINSFRR 971

Query: 540  KK-----KVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILA 704
            KK      +G +FKR  LSYSECCSF QSS    +  PC+ FF+Q  ++  LE  S +LA
Sbjct: 972  KKVGKKMNIGEIFKRTILSYSECCSFHQSSADNRSGSPCLMFFYQDFNNSELEAISQMLA 1031

Query: 705  DTVCPVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSG 884
            D +CPVLL+TVIKGDPR+S+AN+IWI+ ++ TWIRSP KS KGELA+D+ LEK  V +SG
Sbjct: 1032 DFICPVLLKTVIKGDPRISSANIIWINSESTTWIRSPNKSLKGELALDVVLEKSVVKQSG 1091

Query: 885  DAWRVVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLK 1064
            DAWR+ +D CLPV HLID++RSIPYAIKQ++ LLG+SCAF+QAVQRL+ +V MV KGVLK
Sbjct: 1092 DAWRIALDCCLPVLHLIDTRRSIPYAIKQVQELLGVSCAFDQAVQRLAKAVAMVAKGVLK 1151

Query: 1065 DHLLLLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDN 1244
            +HL+LL NSMTCAG  +GFN GG K+LS++L++QVPF  ATLFTP+KCFERAAEKC++D+
Sbjct: 1152 EHLILLANSMTCAGNFVGFNPGGYKALSRALNIQVPFTEATLFTPKKCFERAAEKCHMDS 1211

Query: 1245 LSSIVGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSC 1424
            LSSIV SC+WGKHV+VGTGS FEI+W TK   +     +DV+NFL MVN++  E+  T+ 
Sbjct: 1212 LSSIVASCSWGKHVAVGTGSRFEILWDTKEGGLNEVGGVDVFNFLHMVNAANGEELTTAA 1271

Query: 1425 LGAEI-XXXXXXXXXXFELSPVRDSGAEKPTFEDIID-DSNGISKEDDGGWSSFGTKADG 1598
            LG EI             LSP  +S ++KP FEDI++   N  +      W S  T + G
Sbjct: 1272 LGTEIDDLVPDYENGDVSLSPEHNSSSDKPVFEDIVEFPDNFENVPGKSSWDSIYTASTG 1331

Query: 1599 WNSNSAWG 1622
                  WG
Sbjct: 1332 ---GKDWG 1336


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  611 bits (1575), Expect = e-172
 Identities = 310/545 (56%), Positives = 390/545 (71%), Gaps = 13/545 (2%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASE-FCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI YDGTVRN+CSNSI+QFEYGVN  +     F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 796  VICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAATAMSNPAYKAVLDSTP 855

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W++MKEILLC V FKN+  DRRV+LYLN C CGRK+C+E AA  VKN LK+VSLK
Sbjct: 856  SSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAACLVKNQLKKVSLK 915

Query: 360  EAAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRK 539
            + A+EF+IEY +QL       N   LVGHIHLN+  L + NI + D+L+KCQ+TIN  R+
Sbjct: 916  DTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNEDMLRELNIGVHDILQKCQETINSFRR 975

Query: 540  KK------KVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDIL 701
            KK       +G  FK   L  SE CSF  S   K ++ PC+ FF Q   D+         
Sbjct: 976  KKVGKKKFNIGYHFKNTVLFASEHCSFHHSCAEKRSDSPCLMFFLQATDDLETTTTLQYY 1035

Query: 702  ADTVCPVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKS 881
            AD +CPVLL+T+IKGDPR+ +AN+IWI PDT TWIRSP KS KGE A+DI LEK  + +S
Sbjct: 1036 ADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGEWALDIVLEKSVIKQS 1095

Query: 882  GDAWRVVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVL 1061
            GDAWR V+DSCLPV HLID++RSIPYAIKQI+ LLG+SCAF+QAVQRLST+VTMV KGVL
Sbjct: 1096 GDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQRLSTAVTMVAKGVL 1155

Query: 1062 KDHLLLLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVD 1241
            K+HL+LL NSMTCAG  +GFN+ G K+LS++L++QVPF  ATLFTPRKCFERAAEKC++D
Sbjct: 1156 KEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTPRKCFERAAEKCHMD 1215

Query: 1242 NLSSIVGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTS 1421
            +L+SIV SC+WGKHV+VGTG  F+++W T+ V +  +  +DV+NFL MV+++ +E+A T 
Sbjct: 1216 SLASIVASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGLDVFNFLHMVSTANVEEATTG 1275

Query: 1422 CLGAEI-XXXXXXXXXXFELSPVRDSGAEKPTFEDII--DDSNGISKEDDGGW---SSFG 1583
             LGAE+              SP  +S  ++P FED++  DD  G    +   W   SSF 
Sbjct: 1276 ALGAEVDDLMLVDEMADSSFSPELNSSFDRPVFEDLVEFDDKLG-DLPEKSNWEKDSSFH 1334

Query: 1584 TKADG 1598
            T ++G
Sbjct: 1335 TDSNG 1339


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  582 bits (1501), Expect = e-163
 Identities = 299/543 (55%), Positives = 394/543 (72%), Gaps = 3/543 (0%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 182
            VI YDGTVRN+CSNSI+QFEYG  +A   + + AG+PVGVLAATAMSNPAYKAVLD    
Sbjct: 797  VICYDGTVRNVCSNSIIQFEYGRGSAR--NLYPAGEPVGVLAATAMSNPAYKAVLDSSPS 854

Query: 183  XXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLKE 362
                W++MKEILLC   F+N+  DRRV+LYLN C CGRK+C+E A   V+N LK+VSLK+
Sbjct: 855  SNSSWELMKEILLCKAIFRNELIDRRVILYLNHCGCGRKYCREQATYLVQNQLKKVSLKD 914

Query: 363  AAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRKK 542
             A+EF+IEY++Q    + D N+GL VGHIHLN+  L + +I ++++L+KC++ IN S +K
Sbjct: 915  TAVEFMIEYKNQSSFSAVDMNAGL-VGHIHLNEVLLKEMDIGMNEILQKCEEAIN-SVRK 972

Query: 543  KKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPV 722
            KK+G   K+  LS SECC+F +S     +  PC+    +   +  LE +S ILAD++CP 
Sbjct: 973  KKLGKHLKKAVLSVSECCTFHKSGLDGTSEFPCLLISIRENMNDTLEESSKILADSICPF 1032

Query: 723  LLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRVV 902
            LL+T+IKGD R+S+A + W+S DT T IRSP  S  GELAVD+ L+K A+ +SGDAWR+V
Sbjct: 1033 LLETIIKGDSRISSAKITWLSSDT-TSIRSPQNSDMGELAVDVVLDKSAIKRSGDAWRIV 1091

Query: 903  MDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLLL 1082
            +DSCLPV HLID++RSIPY IKQI+ LLGISCAF+QAVQRLSTSV+MV+KGVLK+HL+LL
Sbjct: 1092 IDSCLPVLHLIDTRRSIPYGIKQIQELLGISCAFDQAVQRLSTSVSMVSKGVLKEHLILL 1151

Query: 1083 GNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIVG 1262
             NSMT AG LIGFN+GG K+L++SL+VQVPF  ATL TP++CFERAAEKC+VD+L+SIV 
Sbjct: 1152 ANSMTYAGNLIGFNSGGYKALTRSLNVQVPFTEATLITPKRCFERAAEKCHVDSLTSIVA 1211

Query: 1263 SCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAEIX 1442
            SC+WGKHV+VGTGS F+I+W T+ V       +DV NFL MV+++  E+A T+CLG EI 
Sbjct: 1212 SCSWGKHVAVGTGSRFDILWDTRKVEFNQAGGVDVNNFLHMVSTAYGEEASTACLGEEID 1271

Query: 1443 XXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGISKEDDGG---WSSFGTKADGWNSNS 1613
                            +  +++P FED ID+   IS++D  G   W +  +   G +S  
Sbjct: 1272 DLMPGDDIAELCLSPENFNSDRPVFED-IDEFQDISEKDLPGKSSWDNLSSFRSGSSSGK 1330

Query: 1614 AWG 1622
             WG
Sbjct: 1331 EWG 1333


>ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutrema salsugineum]
            gi|557112419|gb|ESQ52703.1| hypothetical protein
            EUTSA_v10016128mg [Eutrema salsugineum]
          Length = 1874

 Score =  581 bits (1497), Expect = e-163
 Identities = 298/541 (55%), Positives = 381/541 (70%), Gaps = 2/541 (0%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEY-GVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI+ DGTVRN CSNSIVQF Y G +       F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 790  VITNDGTVRNTCSNSIVQFSYEGNSDRGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSTP 849

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W++MKE+LLC V F+N   DRRV+LYLN C CG+K+CQE AA  V+N LK+VSLK
Sbjct: 850  SSNSSWELMKEVLLCKVNFQNSANDRRVILYLNECRCGKKYCQENAAYTVRNKLKKVSLK 909

Query: 360  EAAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTIN-LSR 536
            E A+EFL+EYR Q       GN   L GHIHLNKT L + NIS+ D+L+KC+D IN L +
Sbjct: 910  ETAVEFLVEYRKQQAISEIFGNDSSLRGHIHLNKTLLQEWNISMQDILQKCEDAINSLVQ 969

Query: 537  KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 716
            KKKK  + FKR +LS+SECCSF     SK +++PC+ F    A+D  LER  D+L  T+ 
Sbjct: 970  KKKKKADDFKRTNLSFSECCSFRDPCASKDSDMPCLMFSSYNATDPDLERTLDVLCHTIY 1029

Query: 717  PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 896
            PVLL+TVIKGDPR+ +AN+ W SP+T TWI +   S +GE  +D+T+EK AV +SGDAWR
Sbjct: 1030 PVLLETVIKGDPRIFSANITWNSPETTTWIWNRHASRRGEWVLDVTVEKSAVKQSGDAWR 1089

Query: 897  VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1076
            VVMDSCL V HLID+ RSIPY+IKQ++ LLG+SCAFEQAVQRLS SV MV+KGVLK+H++
Sbjct: 1090 VVMDSCLSVLHLIDTTRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHII 1149

Query: 1077 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 1256
            L+ N+MTC+G ++GFN+GG K+L++SL+++ PF  ATL TPRKCFE+AAEKC+ D+LS++
Sbjct: 1150 LVANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKCFEKAAEKCHTDSLSTV 1209

Query: 1257 VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 1436
            VGSC+WGK V VGTGS FE++W  K   +  + E DVY+FL+MV S+T  DA  S  G +
Sbjct: 1210 VGSCSWGKRVDVGTGSKFELLWNKKETGLENENETDVYSFLQMVRSTTNADAYASSPGFD 1269

Query: 1437 IXXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGISKEDDGGWSSFGTKADGWNSNSA 1616
            +          +  SP RDS   +  FED  +  N      D G  S     +G++  S 
Sbjct: 1270 V---TEEDMAEWAESPERDSALGELKFEDSAEFQN----IHDEGKPSESKWDNGFSGGSE 1322

Query: 1617 W 1619
            W
Sbjct: 1323 W 1323


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score =  579 bits (1492), Expect = e-162
 Identities = 288/543 (53%), Positives = 385/543 (70%), Gaps = 2/543 (0%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASE-FCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI YDGTVRN+CSNSI+QFEYG+ + + +   F AG+PVGVLAAT+MSNPAYKAVLD   
Sbjct: 798  VICYDGTVRNVCSNSIIQFEYGIQSGDKSQPLFPAGEPVGVLAATSMSNPAYKAVLDASP 857

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W+ MKEILLC V F+N+  DRRV+LYLN CDCGR +C+E AA  VKN L++VSLK
Sbjct: 858  SSNSSWEFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRSYCRENAAYLVKNQLRKVSLK 917

Query: 360  EAAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRK 539
            +AA++F +EY+ Q        ++GL VGHIHLN+  L +  I++S+V +KCQ+ +N   +
Sbjct: 918  DAALDFTVEYQQQRRRNDGSEDAGL-VGHIHLNEAMLEKLKINMSEVYQKCQERLNSFSR 976

Query: 540  KKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCP 719
            KKKV + F++ +L +SE CS   SS       PC+   W    D  L++ + +LAD +CP
Sbjct: 977  KKKVFHFFRKTELFFSESCSSLNSS------APCVTILWPDGDD--LDQTTKVLADMICP 1028

Query: 720  VLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRV 899
            VLL T+I+GDPR+S+AN+IW++P T TW+R+P KS  GELA+D+ LEKEAV +SGDAWR+
Sbjct: 1029 VLLDTIIQGDPRISSANIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWRI 1088

Query: 900  VMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLL 1079
            ++DSCLPV HLID++RS PYAIKQI+ LLGISC F+QA+QRL+ SV MV KGVL++HL+L
Sbjct: 1089 ILDSCLPVLHLIDTRRSTPYAIKQIQELLGISCTFDQAIQRLAASVRMVAKGVLREHLIL 1148

Query: 1080 LGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIV 1259
            L +SMTC G L+GFNTGG K+L++ L++QVPF +ATLFTPRKCFERAAEK + D+LSSIV
Sbjct: 1149 LASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFTPRKCFERAAEKRHADSLSSIV 1208

Query: 1260 GSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNS-STLEDAGTSCLGAE 1436
             SC+WGKHV+VGTGS F+I+W  K V     E +DVYNFL MV   +  ++   +CLG +
Sbjct: 1209 ASCSWGKHVAVGTGSRFDIVWDPKEVKSNEIEGMDVYNFLNMVKGLANGDEENNACLGED 1268

Query: 1437 IXXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGISKEDDGGWSSFGTKADGWNSNSA 1616
            I          + +SP   SG     F+ + D+S  +           G+ ++GW+SN  
Sbjct: 1269 IDDLLDDDNMDWGMSPEHTSG-----FDAVFDESFELLN---------GSTSNGWDSNKD 1314

Query: 1617 WGK 1625
              K
Sbjct: 1315 QNK 1317


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score =  579 bits (1492), Expect = e-162
 Identities = 294/545 (53%), Positives = 383/545 (70%), Gaps = 5/545 (0%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTAN-IASEFCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI+ DGTVRN CSNS+VQF+YGV++       F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 790  VITNDGTVRNTCSNSVVQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSTA 849

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W++MKE+LLC V F+N+T DRRV+LYLN C CG++ CQE AA  V+N L +VSLK
Sbjct: 850  NSNSSWELMKEVLLCKVNFQNNTNDRRVILYLNECRCGKRFCQENAACTVRNKLNKVSLK 909

Query: 360  EAAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINL--S 533
              A+EFL+EYR Q       G    L GHIHLNKT L   NIS+ D+ +KC+D IN    
Sbjct: 910  ATAVEFLVEYRKQQTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQ 969

Query: 534  RKKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTV 713
            +KKKK  + FKR  LS S+CCSF     SK +++PC+ F +  A++  LER  D+L +T+
Sbjct: 970  KKKKKATDDFKRTSLSVSDCCSFRDPCGSKDSDMPCLMFSYN-ATNPDLERTLDVLCNTI 1028

Query: 714  CPVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 893
             PVLL+TVIKGDPR+ +AN+IW S D  TWIR+   S +GE  +D+T+EK AV +SGDAW
Sbjct: 1029 YPVLLETVIKGDPRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAW 1088

Query: 894  RVVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHL 1073
            RVV+DSCL V HLID++RSIPY+IKQ++ LLG+SCAFEQAVQRLS SV MV+KGVLK+H+
Sbjct: 1089 RVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVKMVSKGVLKEHI 1148

Query: 1074 LLLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSS 1253
            +LL N+MTC+G ++GFN+GG K+L++SL+++ PF  ATL TPRKCFE+AAEKC+ D+LS+
Sbjct: 1149 ILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKCFEKAAEKCHTDSLST 1208

Query: 1254 IVGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGA 1433
            +VGSC+WGK V VGTGS FE++W  K   +   EE DVY+FL+MV S+T  DA  S  G 
Sbjct: 1209 VVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVRSTTSSDAFVSSPGF 1268

Query: 1434 EIXXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSN--GISKEDDGGWSSFGTKADGWNS 1607
            ++          +  SP RDS   +P FED  +  N     K+ +  W    +  +G + 
Sbjct: 1269 DV---TEEEMAEWAESPERDSALGEPKFEDSAEFQNLHDDGKQSESNWEKSSSWDNGCSG 1325

Query: 1608 NSAWG 1622
             S WG
Sbjct: 1326 GSEWG 1330


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score =  577 bits (1488), Expect = e-162
 Identities = 294/545 (53%), Positives = 381/545 (69%), Gaps = 5/545 (0%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTAN-IASEFCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI+ DGTVRN CSNS+VQF YGV++       F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 790  VITNDGTVRNTCSNSVVQFTYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSTA 849

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W+ MKE+LLC V F+N T DRRV+LYLN C CG++ CQE AA  V+N LK+VSLK
Sbjct: 850  NSNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKLKKVSLK 909

Query: 360  EAAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINL--S 533
            + A+EFL+EYR Q       G    L GHIHL+KT L   NIS+ D+L+KC+D IN    
Sbjct: 910  DTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKTLLQDWNISMQDILQKCEDVINSLGQ 969

Query: 534  RKKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTV 713
            +KKKK  + FKR  LS SECCSF      K +++PC+ F +  A+D  LER  D+L +T+
Sbjct: 970  KKKKKATDDFKRTSLSVSECCSFQDPCGRKDSDMPCLMFSYS-ATDPDLERTLDVLCNTI 1028

Query: 714  CPVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 893
             PVLL+TVIKGDPR+ +AN+IW S D  TWIR+   S +GE  +D+T+EK AV +SGDAW
Sbjct: 1029 YPVLLETVIKGDPRICSANIIWNSSDMTTWIRNCHASRRGEWVLDVTVEKSAVKQSGDAW 1088

Query: 894  RVVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHL 1073
            RVV+D+CL V HLID++RSIPY+IKQ++ LLG+SCAFEQAVQRLS SV MV+KGVLK+H+
Sbjct: 1089 RVVIDACLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHI 1148

Query: 1074 LLLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSS 1253
            +LL N+MTC+G ++GFN+GG K+L++SL+++ PF  ATL TPR+CFE+AAEKC+ D+LS+
Sbjct: 1149 ILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRRCFEKAAEKCHTDSLST 1208

Query: 1254 IVGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGA 1433
            +VGSC+WGK V VGTGS FE++W  K   +   EE DVY+FL+MV S+T  DA  S  G 
Sbjct: 1209 VVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVRSTTNADAYVSSPGF 1268

Query: 1434 EIXXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSN--GISKEDDGGWSSFGTKADGWNS 1607
            ++          +  SP RDS   +P FED  +  N     K  +  W    +  +G + 
Sbjct: 1269 DV---TEEEMAEWAESPERDSALGEPKFEDSAEFQNLHDEGKPSESNWEKSSSWDNGCSG 1325

Query: 1608 NSAWG 1622
             S WG
Sbjct: 1326 GSEWG 1330


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  576 bits (1485), Expect = e-162
 Identities = 298/564 (52%), Positives = 389/564 (68%), Gaps = 20/564 (3%)
 Frame = +3

Query: 3    VISYDGTVRNMCSNSIVQFEYGVNTANIASE-FCAGDPVGVLAATAMSNPAYKAVLDXXX 179
            VI YDGTVRN+CSNSI+QFEYG+   +     F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 798  VICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLAATAMSNPAYKAVLDASP 857

Query: 180  XXXXXWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRVSLK 359
                 W++MKEILLC V F+N+  DRRV+LYLN CDCG   C+E AA +VKN L++VSLK
Sbjct: 858  NSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRENAAYSVKNQLRKVSLK 917

Query: 360  EAAIEFLIEYRSQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTINLSRK 539
             AA+EF+IEY+ Q   +        LVGHI+L++  L +  IS+++V EKC + +    +
Sbjct: 918  NAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISMANVFEKCLERLKSFSR 977

Query: 540  KKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCP 719
            KKKV    K I+LS+SE CS      S     PC+ F W    D  L+ A  +L++ +CP
Sbjct: 978  KKKVNQYLKNIELSFSESCS------SSHPAAPCLTF-WLKNHDSDLDNAVKVLSENICP 1030

Query: 720  VLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRV 899
            VL +T+IKGDPR+S+A++IW+SPDT TW+R+P KS  GELA+DI LE+EAV +SGDAWR+
Sbjct: 1031 VLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIVLEEEAVKQSGDAWRI 1090

Query: 900  VMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLL 1079
            V+DSCLPV HLID++RSIPYAIKQI+ LLGISC F+QA+QR++ SV MV KGVL++HL+L
Sbjct: 1091 VLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKGVLREHLIL 1150

Query: 1080 LGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIV 1259
            L +SMTC G L+GFNTGG K+LS+ L++QVPF +ATLFTP+KCFERAAEKC+ D+LSSIV
Sbjct: 1151 LASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIV 1210

Query: 1260 GSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTL-EDAGTSCLGAE 1436
             SC+WGKHV+VGTGS F+I+W +  +     E +DVY+FL MV S T  E+   +CLG +
Sbjct: 1211 ASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKSVTNGEEETDACLGED 1270

Query: 1437 IXXXXXXXXXXFELSPVRDSGAEKPTFEDIIDDSNGISKEDDGGW--SSFGTKA-----D 1595
            I            +SP  +SG E   FE+  +  NG       GW  SS  T++      
Sbjct: 1271 IDDLLEEEYMDLGMSPQHNSGFE-AVFEENPEVLNG---STSNGWDVSSNQTQSKTNEWS 1326

Query: 1596 GWNSN-----------SAWGKKVD 1634
            GW S+           ++WGK V+
Sbjct: 1327 GWASSNKDGRSETAQENSWGKTVN 1350