BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00006092
         (944 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty...   199   1e-48
gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymera...   199   2e-48
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]                189   2e-45
gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]         187   5e-45
gb|AAR01754.1| putative copia-type pol polyprotein [Oryza sativa...   186   9e-45
gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]             185   2e-44
gb|AAD20307.1| copia-type pol polyprotein [Zea mays]                  185   3e-44
gb|ABF67921.1| Ji1 putative pol protein [Zea mays]                    184   3e-44
gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]             184   6e-44
gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]           184   6e-44
gb|AEJ07909.1| Opie1 putative pol protein [Zea luxurians]             184   6e-44
gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexic...   184   6e-44
gb|AAK70631.1|AC091238_9 Putative copia-type pol polyprotein [Or...   183   8e-44
gb|AAP52457.2| retrotransposon protein, putative, Ty1-copia subc...   183   8e-44
gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]           183   1e-43
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]                183   1e-43
gb|ABF67947.1| Opie2 pol protein [Zea mays]                           182   2e-43
gb|ABF97883.1| retrotransposon protein, putative, unclassified [...   182   2e-43
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]         182   2e-43
gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Ze...   182   2e-43

>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
            aspartic, catalytic [Medicago truncatula]
          Length = 1715

 Score =  199 bits (507), Expect = 1e-48
 Identities = 123/315 (39%), Positives = 168/315 (53%), Gaps = 4/315 (1%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDEST-GTSQN 768
            FD+KA  GIFLGYSE SKA+RV+N +T  VE + HV FD+     + ++  ES  GT+ +
Sbjct: 1046 FDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDS 1105

Query: 767  QTGSNMQFRDEILIWSPTDLE---EEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCSSS 597
            +  S            P+D E   E E+ P                     EA  T  + 
Sbjct: 1106 EDASESD--------QPSDSEKYTEVESCP---------------------EAEITPEAE 1136

Query: 596  TDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRRRW 417
            ++ E    P +  E + +   ++ QQ+                          I  + + 
Sbjct: 1137 SNSEAEPSPKVQNESASEDFQDNTQQV--------------------------IQPKFKH 1170

Query: 416  VDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEELNE 237
              +HPE+LI+G+  +  +TR    +           EPKTVEEAL+D  W+ AMQEELN+
Sbjct: 1171 KSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQ 1230

Query: 236  FKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDETYA 57
            F+RN+VW LV +P+ + +I  KWVFRNK +E  EV RNKARLVA+GY QQEGIDY ET+A
Sbjct: 1231 FQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFA 1290

Query: 56   PVARLEAIRLFLAYA 12
            PVARLEAIRL L+YA
Sbjct: 1291 PVARLEAIRLLLSYA 1305


>gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
            [Medicago truncatula]
          Length = 1654

 Score =  199 bits (505), Expect = 2e-48
 Identities = 123/311 (39%), Positives = 168/311 (54%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTGTSQNQ 765
            FD KA  GIFLGYSE SKA+RV+N +TH VE + HV FD+           E    +  Q
Sbjct: 985  FDVKAQRGIFLGYSERSKAYRVYNSETHCVEESMHVKFDDR----------EPGSKTPEQ 1034

Query: 764  TGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCSSSTDPE 585
            + SN    D           E+ ++  Q SNS+     +   +    E  P   S+++ E
Sbjct: 1035 SESNAGTTDS----------EDASESDQPSNSEKYTEVE---SYPEAEITPEVESNSEAE 1081

Query: 584  TSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRRRWVDAH 405
             S  P +  E + +   ++ QQ+                          I  + +   +H
Sbjct: 1082 PS--PIVQNESASEDFQDNTQQV--------------------------IQPKFKHKSSH 1113

Query: 404  PEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEELNEFKRN 225
            PE+LI+G+  +  +TR    +           EPKTVEEAL+D  W+ +MQEELN+F+RN
Sbjct: 1114 PEELIIGSKDSPRRTRSHFRQEETLIGLLSIIEPKTVEEALSDDGWILSMQEELNQFQRN 1173

Query: 224  EVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDETYAPVAR 45
            +VW LV +P  + +I  KWVFRNK++E  EV RNKARLVA+GY QQEGIDY ET+APVAR
Sbjct: 1174 DVWDLVPKPFQKNIIGTKWVFRNKQNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVAR 1233

Query: 44   LEAIRLFLAYA 12
            LEAIRL L+YA
Sbjct: 1234 LEAIRLLLSYA 1244


>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
          Length = 1892

 Score =  189 bits (479), Expect = 2e-45
 Identities = 130/339 (38%), Positives = 165/339 (48%), Gaps = 26/339 (7%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDES---------ICEYRETQP- 795
            F  K   G  LGY   ++A+RVFNK T +VEV+  VVFDE+         + E  E Q  
Sbjct: 1197 FAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDEIGEEQAP 1256

Query: 794  ----------------DESTGTSQNQTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQI 663
                             E   ++Q+Q  S+MQ        SP    E+EAQ  ++ N ++
Sbjct: 1257 CIALRNMSIGDVCPKESEEPPSTQDQPPSSMQA-------SPPTQNEDEAQNDEEQNQEV 1309

Query: 662  PPIQQGGMNQGGTEAPPTCSSSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXX 483
             P Q    +QGG                         + DQ  E  ++  P  P+     
Sbjct: 1310 KPPQDKSNDQGGD------------------------TNDQEKEDEEEPRPPHPR----- 1340

Query: 482  XXXXXXXXPILTEEEISRRRRWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEP 303
                         + I R       HP D I+G+   GV TR ++             EP
Sbjct: 1341 -----------VHQAIQRD------HPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEP 1383

Query: 302  KTVEEALADPDWVTAMQEELNEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRN 123
              VEEAL D DWV AMQEELN F RNEVW LV RP +Q V+  KWVFRNK+DE+  V RN
Sbjct: 1384 HRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRN 1442

Query: 122  KARLVAKGYCQQEGIDYDETYAPVARLEAIRLFLAYAAH 6
            KARLVAKGY Q EG+D+DETYAPVARLE+IR+ LAYA +
Sbjct: 1443 KARLVAKGYSQVEGLDFDETYAPVARLESIRILLAYATY 1481


>gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]
          Length = 1065

 Score =  187 bits (475), Expect = 5e-45
 Identities = 123/318 (38%), Positives = 164/318 (51%), Gaps = 5/318 (1%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTGTSQNQ 765
            F  KA  G  LGY   +KA+RVFNK + +VEV+  +VFDE+    RE   D         
Sbjct: 387  FAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDIVFDETNGSLREQVVDLD------- 439

Query: 764  TGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCSSSTDPE 585
                             D++EE+       N  I  ++     +   +  P+ S+   P 
Sbjct: 440  -----------------DVDEEDVPTAAMRNMAIGDVRPQEQLE---QDQPSSSTMVHPP 479

Query: 584  TSMEPAINAELSVDQLA---EHL--QQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRRR 420
            T  +  ++ E + DQ     +H+  ++  P  P                 T+   + +R 
Sbjct: 480  TQDDEQVHQEEACDQGGAQDDHVMEEEAQPAPP-----------------TQVRATIQRD 522

Query: 419  WVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEELN 240
                HP D I+G+   GV TR ++             EP  VEEAL DPDWV AMQEELN
Sbjct: 523  ----HPVDQILGDISKGVTTRSRLANFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELN 578

Query: 239  EFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDETY 60
             FKRNEVW+LV RP  Q V+  KWVFRNK+DE+  V RNKARLVAKGY Q  G+D++ET+
Sbjct: 579  NFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETF 637

Query: 59   APVARLEAIRLFLAYAAH 6
            APVARLE+IR+ LAYAAH
Sbjct: 638  APVARLESIRILLAYAAH 655


>gb|AAR01754.1| putative copia-type pol polyprotein [Oryza sativa Japonica Group]
            gi|108708951|gb|ABF96746.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1177

 Score =  186 bits (473), Expect = 9e-45
 Identities = 126/330 (38%), Positives = 165/330 (50%), Gaps = 17/330 (5%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTG-TSQN 768
            F  K D G  LGY   + A+RVFNK + IVEVT  V FDES     E       G    +
Sbjct: 739  FSPKVDEGFLLGYESNAHAYRVFNKISGIVEVTRDVTFDESNGSQGEQVVVHVVGDVDPS 798

Query: 767  QTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNS---------QIP-PIQQGGMNQGGTEA 618
            Q        D   + +  D E+ +  P   SNS         ++P PI +      G + 
Sbjct: 799  QAIGTKAIGDIRPVETQDDQEDRDQPPSSTSNSPTSAVSAEPEVPGPIDRNLRTSPGPKV 858

Query: 617  PPTC------SSSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXP 456
            P +       S S D  T+    I+A  ++D   +   Q+ P     +            
Sbjct: 859  PGSTVRNLRTSGSEDVPTTQVDGIDAAGTLDHTDQ--AQVPPVHHPRI------------ 904

Query: 455  ILTEEEISRRRRWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALAD 276
                  + R       HP D I+GN R GV TR ++             EP   E+AL D
Sbjct: 905  ---HHTVQRD------HPVDNILGNIRKGVTTRSRVASFCQHFSFVSSLEPTRAEDALGD 955

Query: 275  PDWVTAMQEELNEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGY 96
            PDWV AMQEELN F RN+VW+LV+RP  Q VI  KW+FRNK+DE+  V+RNKARLVA+G+
Sbjct: 956  PDWVMAMQEELNNFTRNQVWTLVERPK-QNVIGTKWIFRNKQDEHGVVVRNKARLVAQGF 1014

Query: 95   CQQEGIDYDETYAPVARLEAIRLFLAYAAH 6
             Q EG+D+ ET+APV RLE+IR+ LAYAAH
Sbjct: 1015 TQVEGLDFGETFAPVGRLESIRILLAYAAH 1044


>gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]
          Length = 800

 Score =  185 bits (470), Expect = 2e-44
 Identities = 128/343 (37%), Positives = 161/343 (46%), Gaps = 30/343 (8%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDES------------------- 822
            F  K   G  LGY   ++A+RVFNK T +VEV+  VVFDE+                   
Sbjct: 147  FAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDEIGNEEAP 206

Query: 821  -----------ICEYRETQPDESTGTSQNQTGSNMQFRDEILIWSPTDLEEEEAQPVQDS 675
                       +C     +P  +    Q+Q  S+MQ        SP    E+EAQ  ++ 
Sbjct: 207  CIALRNMSIGDVCPKESEEPPNA----QDQPSSSMQA-------SPPTQNEDEAQNDEEQ 255

Query: 674  NSQIPPIQQGGMNQGGTEAPPTCSSSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQS 495
            N +  P Q    NQGG                         + DQ  E  ++  P  P+ 
Sbjct: 256  NQEDEPPQDDSNNQGGD------------------------ANDQEKEDEEEPRPPHPR- 290

Query: 494  LXXXXXXXXXXXPILTEEEISRRRRWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXX 315
                             + I R       HP D I+G+   GV TR ++           
Sbjct: 291  ---------------VHQAIQRD------HPVDTILGDIHKGVTTRSRVAHFCEHYSFVS 329

Query: 314  XSEPKTVEEALADPDWVTAMQEELNEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAE 135
              EP  VEEAL D DWV AMQEELN F RNEVW LV RP +Q V+  KWVFRNK+DE+  
Sbjct: 330  SIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGV 388

Query: 134  VIRNKARLVAKGYCQQEGIDYDETYAPVARLEAIRLFLAYAAH 6
            V RNKARLVAKGY Q EG+D+ ETYAPVARLE+IR+ LAYA +
Sbjct: 389  VTRNKARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATY 431


>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
          Length = 1063

 Score =  185 bits (469), Expect = 3e-44
 Identities = 129/339 (38%), Positives = 163/339 (48%), Gaps = 26/339 (7%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDES---------ICEYRETQP- 795
            F  K   G  LGY   ++A+RVFNK T +VEV+  VVFDE+         + E  E Q  
Sbjct: 368  FAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDEIGEEQAP 427

Query: 794  ----------------DESTGTSQNQTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQI 663
                             E   ++Q+Q  S+MQ        SP    E+EAQ  ++ N + 
Sbjct: 428  CIALRNMSIGDVCPKESEEPPSTQDQPSSSMQA-------SPPTQNEDEAQNDEEQNQED 480

Query: 662  PPIQQGGMNQGGTEAPPTCSSSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXX 483
             P Q    +QGG                         + DQ  E  ++  P  P+     
Sbjct: 481  EPPQDDSNDQGGD------------------------TNDQEKEDEEEPRPPHPR----- 511

Query: 482  XXXXXXXXPILTEEEISRRRRWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEP 303
                         + I R       HP D I+G+   GV TR ++             EP
Sbjct: 512  -----------VHQAIQRD------HPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEP 554

Query: 302  KTVEEALADPDWVTAMQEELNEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRN 123
              VEEAL D DWV AMQEELN F RNEVW LV RP +Q V+  KWVFRNK+DE+  V RN
Sbjct: 555  HRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRN 613

Query: 122  KARLVAKGYCQQEGIDYDETYAPVARLEAIRLFLAYAAH 6
            KARLVAKGY Q EG+D+ ETYAPVARLE+IR+ LAYA +
Sbjct: 614  KARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATY 652


>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
          Length = 1063

 Score =  184 bits (468), Expect = 3e-44
 Identities = 129/339 (38%), Positives = 163/339 (48%), Gaps = 26/339 (7%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDES---------ICEYRETQPD 792
            F  K   G  LGY   ++A+RVFNK T +VEV+  VVFDE+         + E  E Q  
Sbjct: 368  FAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDEIGEEQAP 427

Query: 791  -----------------ESTGTSQNQTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQI 663
                             E   ++Q+Q  S+MQ        SP    E+EAQ  ++ N + 
Sbjct: 428  CIALRNMSIGDMCPKEFEEPPSTQDQPSSSMQA-------SPPTQNEDEAQNDEEQNQED 480

Query: 662  PPIQQGGMNQGGTEAPPTCSSSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXX 483
             P Q    +QGG                         + DQ  E  ++  P  P+     
Sbjct: 481  EPPQDDSNDQGGD------------------------TNDQEKEDEEEPRPPHPR----- 511

Query: 482  XXXXXXXXPILTEEEISRRRRWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEP 303
                         + I R       HP D I+G+   GV TR ++             EP
Sbjct: 512  -----------VHQAIQRD------HPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEP 554

Query: 302  KTVEEALADPDWVTAMQEELNEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRN 123
              VEEAL D DWV AMQEELN F RNEVW LV RP +Q V+  KWVFRNK+DE+  V RN
Sbjct: 555  HRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRN 613

Query: 122  KARLVAKGYCQQEGIDYDETYAPVARLEAIRLFLAYAAH 6
            KARLVAKGY Q EG+D+ ETYAPVARLE+IR+ LAYA +
Sbjct: 614  KARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATY 652


>gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]
          Length = 1657

 Score =  184 bits (466), Expect = 6e-44
 Identities = 123/319 (38%), Positives = 160/319 (50%), Gaps = 6/319 (1%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPD------EST 783
            F  KA  G  LGY   +KA+RVFNK + +VEV+  VVFDE+    RE   D      E  
Sbjct: 979  FAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNGSPREQVVDCDDVDEEDV 1038

Query: 782  GTSQNQTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCS 603
             T+  +T +  + R +               P  + + Q+P ++   ++QGG +      
Sbjct: 1039 PTAAIRTMAIGEVRPQEQDERDQPSSSTMVHPPTEDDEQVPQVE--ALDQGGAQD----- 1091

Query: 602  SSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRR 423
                               DQ+ E  ++  P  P  +                     R 
Sbjct: 1092 -------------------DQVME--EEAQPAPPTQV---------------------RA 1109

Query: 422  RWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEEL 243
                 HP D I+G+   GV TR ++             EP  VEEAL DPDWV AMQEEL
Sbjct: 1110 MIQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEEL 1169

Query: 242  NEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDET 63
            N FKRNEVW+LV RP  Q V+  KWVFRNK+DE+  V RNKARLVAKGY Q  G+D++ET
Sbjct: 1170 NNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEET 1228

Query: 62   YAPVARLEAIRLFLAYAAH 6
            +APVARLE+IR+ LAYAAH
Sbjct: 1229 FAPVARLESIRILLAYAAH 1247


>gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  184 bits (466), Expect = 6e-44
 Identities = 123/319 (38%), Positives = 160/319 (50%), Gaps = 6/319 (1%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPD------EST 783
            F  KA  G  LGY   +KA+RVFNK + +VEV+  VVFDE+    RE   D      E  
Sbjct: 370  FAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNGSPREQVVDCDDVDEEDV 429

Query: 782  GTSQNQTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCS 603
             T+  +T +  + R +               P  + + Q+P ++   ++QGG +      
Sbjct: 430  PTAAIRTMAIGEVRPQEQDERDQPSSSTMVHPPTEDDEQVPQVE--ALDQGGAQD----- 482

Query: 602  SSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRR 423
                               DQ+ E  ++  P  P  +                     R 
Sbjct: 483  -------------------DQVME--EEAQPAPPTQV---------------------RA 500

Query: 422  RWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEEL 243
                 HP D I+G+   GV TR ++             EP  VEEAL DPDWV AMQEEL
Sbjct: 501  MIQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEEL 560

Query: 242  NEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDET 63
            N FKRNEVW+LV RP  Q V+  KWVFRNK+DE+  V RNKARLVAKGY Q  G+D++ET
Sbjct: 561  NNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEET 619

Query: 62   YAPVARLEAIRLFLAYAAH 6
            +APVARLE+IR+ LAYAAH
Sbjct: 620  FAPVARLESIRILLAYAAH 638


>gb|AEJ07909.1| Opie1 putative pol protein [Zea luxurians]
          Length = 830

 Score =  184 bits (466), Expect = 6e-44
 Identities = 124/315 (39%), Positives = 166/315 (52%), Gaps = 2/315 (0%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTGTSQNQ 765
            F  KA  G  LGY   +KA+RVFNK + +VEV+  VVFDE+                   
Sbjct: 370  FAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDET------------------- 410

Query: 764  TGSNMQFRDEILIWSPTDLEEEEAQPVQD-SNSQIPPIQQGGMNQGGTEAPPTCSSSTDP 588
               N   R++++     D E+     ++  +   + P +Q   NQ      P+ S+   P
Sbjct: 411  ---NGSPREQVVDLDDIDEEDVPTAAIRTMAIGDVRPQEQLEQNQ------PSSSTMVHP 461

Query: 587  ETSMEPAINAELSVDQL-AEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRRRWVD 411
             T  +  +    + DQ  A+ +Q      PQ+               T+   + +R    
Sbjct: 462  PTQDDKQVPRVEAHDQGGAQDVQVEEEEAPQAPP-------------TQVRATIQRD--- 505

Query: 410  AHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEELNEFK 231
             HP D I+G+   GV TR ++             EP  VEEAL DPDWV AMQEELN FK
Sbjct: 506  -HPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFK 564

Query: 230  RNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDETYAPV 51
            RNEVW+LV RP  Q V+  KWVFRNK+DE+  V+RNKARLVAKGY Q  G+D++ET+APV
Sbjct: 565  RNEVWTLVPRPK-QNVVGTKWVFRNKQDEHGVVMRNKARLVAKGYAQVAGLDFEETFAPV 623

Query: 50   ARLEAIRLFLAYAAH 6
            ARLE+IR+ LAYAAH
Sbjct: 624  ARLESIRILLAYAAH 638


>gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  184 bits (466), Expect = 6e-44
 Identities = 120/318 (37%), Positives = 164/318 (51%), Gaps = 5/318 (1%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTGTSQNQ 765
            F  KA  G  LGY   +KA+RVFNK + +VEV+  VVFDE+                   
Sbjct: 370  FAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDET------------------- 410

Query: 764  TGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCSSSTDPE 585
               N   R++++     DL++ + + V  +  +   I      +   +  P+ S+   P 
Sbjct: 411  ---NGSPREQVV-----DLDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQPSSSTMVHPP 462

Query: 584  TSMEPAINAELSVDQ---LAEHL--QQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRRR 420
            T  +  ++ + + DQ     +H+  ++  P  P  +                     R  
Sbjct: 463  TQDDEQVHQQEACDQGGAQVDHVMEEEAQPAPPTQV---------------------RAM 501

Query: 419  WVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEELN 240
                HP D I+G+   GV TR ++             EP  VEEAL DPDWV AMQEELN
Sbjct: 502  IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELN 561

Query: 239  EFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDETY 60
             FKRNEVW+LV RP  Q V+  KWVFRNK+DE+  V RNKARLVAKGY Q  G+D++ET+
Sbjct: 562  NFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDEHGMVTRNKARLVAKGYAQVAGLDFEETF 620

Query: 59   APVARLEAIRLFLAYAAH 6
            APVARLE+IR+ LAYAAH
Sbjct: 621  APVARLESIRILLAYAAH 638


>gb|AAK70631.1|AC091238_9 Putative copia-type pol polyprotein [Oryza sativa Japonica Group]
            gi|21321748|gb|AAM47283.1|AC122146_2 Putative copia-type
            pol polyprotein [Oryza sativa Japonica Group]
          Length = 1289

 Score =  183 bits (465), Expect = 8e-44
 Identities = 125/330 (37%), Positives = 165/330 (50%), Gaps = 17/330 (5%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTG-TSQN 768
            F SK D G  LGY   + A+ VFN+ + IVEVT  V FDES     E       G    +
Sbjct: 814  FSSKVDEGFLLGYESNAHAYCVFNRTSGIVEVTRDVTFDESNGSQGEQVVVHVVGDVDPS 873

Query: 767  QTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNS---------QIP-PIQQGGMNQGGTEA 618
            Q        D   + +  D E+ +  P   SNS         ++P PI +      G E 
Sbjct: 874  QAIGTKAIGDIRPVETQDDQEDRDQPPSSTSNSPTSAVSAEPEVPGPIDRNIRTSPGPEV 933

Query: 617  PPTC------SSSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXP 456
            P +       S S D  T+    I+A  +++ + +   Q+ P     +            
Sbjct: 934  PGSIVWNLRTSGSEDVPTAQVDGIDAAGTLEHIDQ--AQVPPVHHPRI------------ 979

Query: 455  ILTEEEISRRRRWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALAD 276
                  + R       HP D I+G+ R GV TR  +             EP TVE+AL  
Sbjct: 980  ---HHTVQRD------HPADNILGDIRKGVTTRSHVASFCQHFSFVSSLEPTTVEDALVY 1030

Query: 275  PDWVTAMQEELNEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGY 96
            PDWV AMQEELN F RN+VW+LV+RP  Q VI  KW+FRNK+DE   V+RNKARLVA+G+
Sbjct: 1031 PDWVMAMQEELNNFTRNQVWTLVERPK-QNVIGTKWIFRNKQDEYGVVVRNKARLVAQGF 1089

Query: 95   CQQEGIDYDETYAPVARLEAIRLFLAYAAH 6
             Q EG+D+ ET+APVAR E+IR+ LAYAAH
Sbjct: 1090 TQVEGLDFGETFAPVARFESIRILLAYAAH 1119


>gb|AAP52457.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1305

 Score =  183 bits (465), Expect = 8e-44
 Identities = 125/330 (37%), Positives = 165/330 (50%), Gaps = 17/330 (5%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTG-TSQN 768
            F SK D G  LGY   + A+ VFN+ + IVEVT  V FDES     E       G    +
Sbjct: 830  FSSKVDEGFLLGYESNAHAYCVFNRTSGIVEVTRDVTFDESNGSQGEQVVVHVVGDVDPS 889

Query: 767  QTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNS---------QIP-PIQQGGMNQGGTEA 618
            Q        D   + +  D E+ +  P   SNS         ++P PI +      G E 
Sbjct: 890  QAIGTKAIGDIRPVETQDDQEDRDQPPSSTSNSPTSAVSAEPEVPGPIDRNIRTSPGPEV 949

Query: 617  PPTC------SSSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXP 456
            P +       S S D  T+    I+A  +++ + +   Q+ P     +            
Sbjct: 950  PGSIVWNLRTSGSEDVPTAQVDGIDAAGTLEHIDQ--AQVPPVHHPRI------------ 995

Query: 455  ILTEEEISRRRRWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALAD 276
                  + R       HP D I+G+ R GV TR  +             EP TVE+AL  
Sbjct: 996  ---HHTVQRD------HPADNILGDIRKGVTTRSHVASFCQHFSFVSSLEPTTVEDALVY 1046

Query: 275  PDWVTAMQEELNEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGY 96
            PDWV AMQEELN F RN+VW+LV+RP  Q VI  KW+FRNK+DE   V+RNKARLVA+G+
Sbjct: 1047 PDWVMAMQEELNNFTRNQVWTLVERPK-QNVIGTKWIFRNKQDEYGVVVRNKARLVAQGF 1105

Query: 95   CQQEGIDYDETYAPVARLEAIRLFLAYAAH 6
             Q EG+D+ ET+APVAR E+IR+ LAYAAH
Sbjct: 1106 TQVEGLDFGETFAPVARFESIRILLAYAAH 1135


>gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  183 bits (464), Expect = 1e-43
 Identities = 121/319 (37%), Positives = 153/319 (47%), Gaps = 6/319 (1%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPD------EST 783
            F  KA  G  LGY   +KA+RVFNK + +VEV+  VVFDE+    RE   D      E  
Sbjct: 370  FAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNGSPREQVVDLDDVDEEDV 429

Query: 782  GTSQNQTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCS 603
             T+  +T +    R +  +            P    + Q+P  Q    +QGG +      
Sbjct: 430  PTAAMRTMAIGDVRPQAHLEQDQPSSSTMVHPPTQDDEQVP--QMEACDQGGAQDDRVME 487

Query: 602  SSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRR 423
                P    +  + A +  D                                        
Sbjct: 488  EEAQPAPPTQ--VRAMIQRD---------------------------------------- 505

Query: 422  RWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEEL 243
                 HP D I+G+   GV TR ++             EP  VEEAL DPDWV AMQEEL
Sbjct: 506  -----HPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEEL 560

Query: 242  NEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDET 63
            N FKRNEVW+LV RP  Q V+  KWVFRNK+DE+  V RNKARLVAKGY Q  G+D++ET
Sbjct: 561  NNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEET 619

Query: 62   YAPVARLEAIRLFLAYAAH 6
            +APVARLE+IR+ LAYAAH
Sbjct: 620  FAPVARLESIRILLAYAAH 638


>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
          Length = 2319

 Score =  183 bits (464), Expect = 1e-43
 Identities = 126/331 (38%), Positives = 168/331 (50%), Gaps = 18/331 (5%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTGTSQNQ 765
            F  + D G  LGY+  +  +RVFN  T +VE+   V FDES         + S G   N 
Sbjct: 1113 FAPRVDEGFLLGYASNAHGYRVFNNSTGLVEIAIDVTFDES---------NGSQGHVSND 1163

Query: 764  TGSNMQFRDE------ILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCS 603
            T  N +   E      I    P + ++EE   +  +N  +    +   +   T+A P+ S
Sbjct: 1164 TVGNEKLPCESIKKLAIGEVRPQERDDEEG-TLWMTNEVVDVGARVVSDNVSTQANPSTS 1222

Query: 602  SSTDPETS----------MEPAINAELSVDQLAEHLQQL--NPFTPQSLXXXXXXXXXXX 459
            S  + E +           +  I+ E+ +DQ+    +Q+  +P  P              
Sbjct: 1223 SHPNHEENHQRMPTVVEDEQENIDGEVPLDQVTNEEEQIQRHPSVPHP------------ 1270

Query: 458  PILTEEEISRRRRWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALA 279
                   I R       HP D I+G+ R GV TR ++             EP  VEEAL 
Sbjct: 1271 --RVHHTIQR------DHPVDNILGSIRRGVTTRSRLANFCEFYSFVSSLEPLKVEEALD 1322

Query: 278  DPDWVTAMQEELNEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKG 99
            DPDW+TAMQEELN F RNEVWSLV RP  Q VI  KWVFRNK+DEN  V +NKARLVA+G
Sbjct: 1323 DPDWITAMQEELNNFTRNEVWSLVQRP-KQNVIGTKWVFRNKQDENGVVTKNKARLVAQG 1381

Query: 98   YCQQEGIDYDETYAPVARLEAIRLFLAYAAH 6
            Y Q EG+D+ ETYAPVARLE+IR+ +AYA +
Sbjct: 1382 YTQVEGLDFGETYAPVARLESIRILIAYATN 1412


>gb|ABF67947.1| Opie2 pol protein [Zea mays]
          Length = 1048

 Score =  182 bits (462), Expect = 2e-43
 Identities = 121/319 (37%), Positives = 153/319 (47%), Gaps = 6/319 (1%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPD------EST 783
            F  KA  G  LGY   +KA+RVFNK + +VEV+  VVFDE+    RE   D      E  
Sbjct: 370  FAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNGSPREQVVDLDDVDEEDV 429

Query: 782  GTSQNQTGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCS 603
             T+  +T +    R +  +            P    + Q+P  Q    +QGG +      
Sbjct: 430  PTAAMRTMAIGDVRPQEHLEQDQPSSSTMVHPPTQDDEQVP--QMEACDQGGAQDDRVME 487

Query: 602  SSTDPETSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRR 423
                P    +  + A +  D                                        
Sbjct: 488  EEAQPAPPTQ--VRAMIQRD---------------------------------------- 505

Query: 422  RWVDAHPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEEL 243
                 HP D I+G+   GV TR ++             EP  VEEAL DPDWV AMQEEL
Sbjct: 506  -----HPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEEL 560

Query: 242  NEFKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDET 63
            N FKRNEVW+LV RP  Q V+  KWVFRNK+DE+  V RNKARLVAKGY Q  G+D++ET
Sbjct: 561  NNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEET 619

Query: 62   YAPVARLEAIRLFLAYAAH 6
            +APVARLE+IR+ LAYAAH
Sbjct: 620  FAPVARLESIRILLAYAAH 638


>gb|ABF97883.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1441

 Score =  182 bits (462), Expect = 2e-43
 Identities = 117/312 (37%), Positives = 162/312 (51%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTGTSQNQ 765
            F+S  D G  LGY+  SKA+RV+NK   IVE T +V FDE             T  SQ  
Sbjct: 776  FESWCDEGFLLGYASNSKAYRVYNKNKGIVEETANVQFDE-------------TNGSQEG 822

Query: 764  TGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCSSSTDPE 585
              +     DE L+ +   +   + + ++                   E  P+ S+  +P 
Sbjct: 823  HENLDDVGDEGLMRAMKHMSIGDVKLIE------------------VEDKPSTSTQNEPS 864

Query: 584  TSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRRRWVDAH 405
            TS  P+  A++ V+   E   Q  P  P+               L+++           H
Sbjct: 865  TSASPS-QAQVEVE---EEKAQDPPMPPR-----------IHTALSKD-----------H 898

Query: 404  PEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEELNEFKRN 225
            P D ++G+   GV+TR ++             EPK V+EAL DPDW+ AM EELN F RN
Sbjct: 899  PIDQVLGDISKGVQTRSRVASICEHYSFVSCLEPKHVDEALCDPDWMNAMHEELNNFARN 958

Query: 224  EVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDETYAPVAR 45
            +VW+LV+RP    VI  KWVFRNK+DEN  V+RNKARLVA+G+ Q EG+D+ ET+APV R
Sbjct: 959  KVWTLVERPRDHNVIGTKWVFRNKQDENGLVVRNKARLVAQGFTQVEGLDFGETFAPVTR 1018

Query: 44   LEAIRLFLAYAA 9
            LEAIR+FLA+A+
Sbjct: 1019 LEAIRIFLAFAS 1030


>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
          Length = 1760

 Score =  182 bits (461), Expect = 2e-43
 Identities = 126/317 (39%), Positives = 156/317 (49%), Gaps = 4/317 (1%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTGTSQNQ 765
            F  K   G  LGY   ++A+RVFNK T +VEV+  VVFDE+     E    + TG   N 
Sbjct: 1066 FAPKTVEGFLLGYDPNTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDETG---ND 1122

Query: 764  TGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCSSSTDPE 585
                +  R+ + I      E EE    QD                     P+ S+   P 
Sbjct: 1123 EAPCVALRN-MSIGDVCPKESEELPSAQDQ--------------------PSSSTQASPP 1161

Query: 584  TSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRRRWVDA- 408
            T  E     E  VD++ +   +     PQ                 EE+     R   A 
Sbjct: 1162 TQNED----EAQVDEVEDQANE----PPQDDGIDQGGDANDQDKEDEEQRPPHPRVHQAI 1213

Query: 407  ---HPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEELNE 237
               HP D I+G+   GV TR ++             EP  VEEAL D DWV AMQEELN 
Sbjct: 1214 QQDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNN 1273

Query: 236  FKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDETYA 57
            F RNEVW LV RP +Q V+  KWVFRNK+DE+  V RNKARLVAKGY Q EG+D+ ETYA
Sbjct: 1274 FTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYA 1332

Query: 56   PVARLEAIRLFLAYAAH 6
            PVARLE+IR+ LAYA +
Sbjct: 1333 PVARLESIRILLAYATY 1349


>gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Zea mays]
          Length = 1604

 Score =  182 bits (461), Expect = 2e-43
 Identities = 126/317 (39%), Positives = 156/317 (49%), Gaps = 4/317 (1%)
 Frame = -1

Query: 944  FDSKADPGIFLGYSEISKAFRVFNKKTHIVEVTPHVVFDESICEYRETQPDESTGTSQNQ 765
            F  K   G  LGY   ++A+RVFNK T +VEV+  VVFDE+     E    + TG   N 
Sbjct: 1066 FAPKTVEGFLLGYDPNTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDETG---ND 1122

Query: 764  TGSNMQFRDEILIWSPTDLEEEEAQPVQDSNSQIPPIQQGGMNQGGTEAPPTCSSSTDPE 585
                +  R+ + I      E EE    QD                     P+ S+   P 
Sbjct: 1123 EAPCVALRN-MSIGDVCPKESEELPSAQDQ--------------------PSSSTQASPP 1161

Query: 584  TSMEPAINAELSVDQLAEHLQQLNPFTPQSLXXXXXXXXXXXPILTEEEISRRRRWVDA- 408
            T  E     E  VD++ +   +     PQ                 EE+     R   A 
Sbjct: 1162 TQNED----EAQVDEVEDQANE----PPQDDGIDQGGDANDQDKEDEEQRPPHPRVHQAI 1213

Query: 407  ---HPEDLIVGNPRAGVKTRRQIGEXXXXXXXXXXSEPKTVEEALADPDWVTAMQEELNE 237
               HP D I+G+   GV TR ++             EP  VEEAL D DWV AMQEELN 
Sbjct: 1214 QQDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNN 1273

Query: 236  FKRNEVWSLVDRPTHQGVIDVKWVFRNKRDENAEVIRNKARLVAKGYCQQEGIDYDETYA 57
            F RNEVW LV RP +Q V+  KWVFRNK+DE+  V RNKARLVAKGY Q EG+D+ ETYA
Sbjct: 1274 FTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYA 1332

Query: 56   PVARLEAIRLFLAYAAH 6
            PVARLE+IR+ LAYA +
Sbjct: 1333 PVARLESIRILLAYATY 1349