BLASTX nr result
ID: Magnolia22_contig00019630
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Magnolia22_contig00019630
(419 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
OMO92476.1 hypothetical protein CCACVL1_06836 [Corchorus capsula... 150 3e-44
GAV67225.1 zf-CCHC domain-containing protein/rve domain-containi... 149 1e-42
ABA98367.2 retrotransposon protein, putative, Ty1-copia subclass... 133 1e-37
BAA22288.1 polyprotein [Oryza australiensis] 134 1e-37
CBI20118.3 unnamed protein product, partial [Vitis vinifera] 133 3e-37
CAN82637.1 hypothetical protein VITISV_028818 [Vitis vinifera] 132 6e-37
AAM74249.1 Putative retroelement [Oryza sativa Japonica Group] 130 8e-37
AAP52343.2 retrotransposon protein, putative, Ty1-copia subclass... 130 8e-37
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 128 1e-36
KYP72325.1 Retrovirus-related Pol polyprotein from transposon TN... 124 1e-36
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 131 2e-36
CAN66873.1 hypothetical protein VITISV_021427 [Vitis vinifera] 129 3e-36
KYP47168.1 Retrovirus-related Pol polyprotein from transposon TN... 131 4e-36
CAN66710.1 hypothetical protein VITISV_006397 [Vitis vinifera] 131 5e-36
KYP33726.1 Retrovirus-related Pol polyprotein from transposon TN... 122 5e-36
KYP31709.1 Retrovirus-related Pol polyprotein from transposon TN... 122 5e-36
AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-clas... 131 6e-36
JAU83095.1 Retrovirus-related Pol polyprotein from transposon TN... 129 7e-36
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic... 127 2e-35
AAD17357.1 contains similarity to retrovirus-related polyprotein... 132 2e-35
>OMO92476.1 hypothetical protein CCACVL1_06836 [Corchorus capsularis]
Length = 949
Score = 150 bits (380), Expect(2) = 3e-44
Identities = 71/103 (68%), Positives = 84/103 (81%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L ++IK+LR+DRG EY SE FK C+ GI+RQ T+ TPQQNGVAERRNRTLLDMVRSM
Sbjct: 676 LGQSIKVLRTDRGREYLSEKFKELCDEKGILRQLTILGTPQQNGVAERRNRTLLDMVRSM 735
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTP 6
MAQANL ++WGDALLTA Y+LN VPSKS+ TPYE+W+G P
Sbjct: 736 MAQANLPISYWGDALLTATYVLNSVPSKSVSSTPYELWTGEKP 778
Score = 55.1 bits (131), Expect(2) = 3e-44
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQL 313
FIDD+ R+G+VYLISHKSEA +CF Y A VENQL
Sbjct: 642 FIDDFTRFGHVYLISHKSEALNCFRLYVALVENQL 676
>GAV67225.1 zf-CCHC domain-containing protein/rve domain-containing
protein/RVT_2 domain-containing protein/gag_pre-integrs
domain-containing protein/UBN2_2 domain-containing
protein, partial [Cephalotus follicularis]
Length = 980
Score = 149 bits (377), Expect(2) = 1e-42
Identities = 71/102 (69%), Positives = 83/102 (81%)
Frame = -1
Query: 308 KNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSMMA 129
+N+KIL++DRG EY S F CE GI RQ T+ YTPQQNGVAERRNRTLLDMVRSMMA
Sbjct: 556 RNLKILQTDRGREYLSAQFNKLCELKGIKRQLTIPYTPQQNGVAERRNRTLLDMVRSMMA 615
Query: 128 QANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
QANL +FWGDALLTA YILN+VPS+S+ TPYE+W+ R P+
Sbjct: 616 QANLPISFWGDALLTAAYILNKVPSQSVLSTPYELWNNREPN 657
Score = 51.2 bits (121), Expect(2) = 1e-42
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQ 316
FIDDY R+G V+L++H+SEA DCF ++ AE ENQ
Sbjct: 520 FIDDYSRFGQVFLLAHRSEALDCFKRFIAESENQ 553
>ABA98367.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 133 bits (335), Expect(2) = 1e-37
Identities = 67/104 (64%), Positives = 79/104 (75%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
LRK IK LRSD GGEY S F ++ + GIV Q T TPQ NGV+ERRNRTLL+MVRSM
Sbjct: 1031 LRKTIKYLRSDHGGEYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMVRSM 1090
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
M+Q NL +FWG AL TA + LNRVPSKS+ KTPYE+W+G+ PS
Sbjct: 1091 MSQTNLLLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPS 1134
Score = 50.4 bits (119), Expect(2) = 1e-37
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
F DD+ RYGYVYL+ HKSE+F+ F +++ EV+N L K
Sbjct: 997 FTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRK 1033
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 134 bits (338), Expect(2) = 1e-37
Identities = 67/104 (64%), Positives = 81/104 (77%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L K IK LRSDRGGEY S+ F ++ ++ GIV Q T TPQ NGV+ERRNRTLLDMVRSM
Sbjct: 555 LGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSM 614
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
M+Q++L +FWG AL TA LNRVPSKS+ KTPYE+W+G+ PS
Sbjct: 615 MSQSDLPLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPS 658
Score = 49.3 bits (116), Expect(2) = 1e-37
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
F DD+ RYGY+YL+ HKSE+F+ F +++ EV+N L K
Sbjct: 521 FTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGK 557
>CBI20118.3 unnamed protein product, partial [Vitis vinifera]
Length = 1354
Score = 133 bits (334), Expect(2) = 3e-37
Identities = 66/113 (58%), Positives = 83/113 (73%), Gaps = 9/113 (7%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEM---------FKSYCENVGIVRQYTMAYTPQQNGVAERRNR 162
L K IKI+RSD+GGEY F + E GI QYTM TPQQNGVAERRNR
Sbjct: 921 LDKKIKIVRSDQGGEYYGRYDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNR 980
Query: 161 TLLDMVRSMMAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
TL++MVRSMM+ +++ + WG+AL TA+YILNRVPSK++PKTP+E+W+GR PS
Sbjct: 981 TLMEMVRSMMSYSSVPISLWGEALKTAMYILNRVPSKAVPKTPFELWTGRKPS 1033
Score = 49.3 bits (116), Expect(2) = 3e-37
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEKK 304
FIDD RYGYVYL+ KS+A D F + EVE QL+KK
Sbjct: 887 FIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKK 924
>CAN82637.1 hypothetical protein VITISV_028818 [Vitis vinifera]
Length = 1114
Score = 132 bits (332), Expect(2) = 6e-37
Identities = 60/104 (57%), Positives = 75/104 (72%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L KNIK+LRSDRGGEY S F S+CE GI+ + T YTPQ NG+AER+NRT L+MV +M
Sbjct: 446 LGKNIKVLRSDRGGEYFSSEFNSFCEEYGIIHECTAPYTPQHNGIAERKNRTFLEMVNAM 505
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
+ A L+ WG+ALL A YILNR+P K +PYE+W GR P+
Sbjct: 506 LLHAKLNFNLWGEALLIACYILNRIPMKKNEISPYELWKGRKPN 549
Score = 49.3 bits (116), Expect(2) = 6e-37
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
FIDD R+ YV+L+ +KSE F+ F YKAEVENQL K
Sbjct: 412 FIDDCSRFTYVFLLKNKSETFNAFKVYKAEVENQLGK 448
>AAM74249.1 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 130 bits (328), Expect(2) = 8e-37
Identities = 66/104 (63%), Positives = 80/104 (76%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L K IK LRSDRGGEY S F ++ + GIV Q T TPQ NGV++RRNRTLLDMVRSM
Sbjct: 104 LDKTIKYLRSDRGGEYWSLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSM 163
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
M+Q +L +FWG AL TAV+ +NRVPSKS+ KTPYE+W+G+ PS
Sbjct: 164 MSQTDLPLSFWGYALETAVFTVNRVPSKSMDKTPYEIWTGKRPS 207
Score = 50.4 bits (119), Expect(2) = 8e-37
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
F DD+ RYGYVYL+ HKSE+F+ F ++ EV+N L+K
Sbjct: 70 FTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDK 106
>AAP52343.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 130 bits (328), Expect(2) = 8e-37
Identities = 66/104 (63%), Positives = 80/104 (76%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L K IK LRSDRGGEY S F ++ + GIV Q T TPQ NGV++RRNRTLLDMVRSM
Sbjct: 104 LDKTIKYLRSDRGGEYWSLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSM 163
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
M+Q +L +FWG AL TAV+ +NRVPSKS+ KTPYE+W+G+ PS
Sbjct: 164 MSQTDLPLSFWGYALETAVFTVNRVPSKSMDKTPYEIWTGKRPS 207
Score = 50.4 bits (119), Expect(2) = 8e-37
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
F DD+ RYGYVYL+ HKSE+F+ F ++ EV+N L+K
Sbjct: 70 FTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDK 106
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 128 bits (321), Expect(2) = 1e-36
Identities = 64/104 (61%), Positives = 79/104 (75%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L K IK LRSDRGGE+ S+ F ++ + GIV Q T TPQ NGV+ER NRTLLDMVR M
Sbjct: 643 LGKTIKSLRSDRGGEFLSQEFGNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMVRLM 702
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
M+Q++L FWG AL TA + LNRVPSKS+ KTPYE+W+G++PS
Sbjct: 703 MSQSDLPLYFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKSPS 746
Score = 52.8 bits (125), Expect(2) = 1e-36
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
F DDY RYGY+YL+ HKSE+F+ F +++ EV+NQL K
Sbjct: 609 FTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGK 645
>KYP72325.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 565
Score = 124 bits (310), Expect(2) = 1e-36
Identities = 56/104 (53%), Positives = 73/104 (70%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L K+IKILRSDRGGEY+S + E GI+ + T Y PQ NG+AER+NRTLLDM+ +M
Sbjct: 140 LEKSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAM 199
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
+ + L WG+AL TA +ILNR+P K+ KTPYE+W R P+
Sbjct: 200 LISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPN 243
Score = 57.0 bits (136), Expect(2) = 1e-36
Identities = 27/37 (72%), Positives = 30/37 (81%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
FIDD+ +Y YVYLI HKSE F+ F YKAEVENQLEK
Sbjct: 106 FIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLEK 142
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 131 bits (329), Expect(2) = 2e-36
Identities = 62/102 (60%), Positives = 78/102 (76%)
Frame = -1
Query: 308 KNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSMMA 129
K+IK LRSDRGGEY S++F + GIV Q T TPQ NGV+ERRNRTLLDMVRSMM+
Sbjct: 201 KSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSMMS 260
Query: 128 QANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
+L + FWG AL T+ ++LNR PSKS+ KTPYE+W+G+ P+
Sbjct: 261 HTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKVPN 302
Score = 48.9 bits (115), Expect(2) = 2e-36
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
F DD+ RYGYVYL+ HKS++F+ F +++ EV+NQ K
Sbjct: 165 FTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGK 201
>CAN66873.1 hypothetical protein VITISV_021427 [Vitis vinifera]
Length = 1473
Score = 129 bits (325), Expect(2) = 3e-36
Identities = 59/104 (56%), Positives = 74/104 (71%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L KNIK+LRSDRG EY S F S+CE GI+ + T YTPQ NG+AER+NRT L+MV M
Sbjct: 556 LXKNIKVLRSDRGXEYFSSEFNSFCEEYGIIHECTAPYTPQHNGIAERKNRTFLEMVNXM 615
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
+ A L+ WG+ALLTA +ILNR+P K +PYE+W GR P+
Sbjct: 616 LLHAKLNFNLWGEALLTACHILNRIPMKKKEISPYELWKGRKPN 659
Score = 49.7 bits (117), Expect(2) = 3e-36
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
FIDD R+ YV+L+ +KSE F+ F YKAEVENQL K
Sbjct: 522 FIDDCSRFTYVFLLKNKSETFNAFKVYKAEVENQLXK 558
>KYP47168.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan] KYP47194.1 Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Cajanus cajan]
KYP47195.1 Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Cajanus cajan]
Length = 181
Score = 131 bits (329), Expect = 4e-36
Identities = 64/124 (51%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = -1
Query: 371 TNLRLLIVFLNIKLRWKISLRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQ 192
T L + +F K + K IK+LRSDRG EYTS F +CE+ GI RQ T+ YTPQ
Sbjct: 30 TKLEVFGIFKKFKTLVEKQSGKQIKVLRSDRGKEYTSFEFDKFCEDEGIDRQITVRYTPQ 89
Query: 191 QNGVAERRNRTLLDMVRSMMAQANLSTTFWGDALLTAVYILNRVPSKSI-PKTPYEMWSG 15
QNGV+ER+NRT+++M RSM+ + L TFW +A+ T VY+LNR P+K++ KTP E WSG
Sbjct: 90 QNGVSERKNRTVMEMARSMLKEKGLPNTFWAEAVYTVVYLLNRCPTKAVRDKTPIEAWSG 149
Query: 14 RTPS 3
+ PS
Sbjct: 150 KKPS 153
>CAN66710.1 hypothetical protein VITISV_006397 [Vitis vinifera]
Length = 1105
Score = 131 bits (329), Expect(2) = 5e-36
Identities = 59/104 (56%), Positives = 75/104 (72%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L KNIK+LRSDRGGEY S F S+CE GI+ + T YTPQ NG+AER+NRT L+MV +M
Sbjct: 349 LGKNIKVLRSDRGGEYFSSEFNSFCEEYGIIHECTAPYTPQHNGIAERKNRTFLEMVNAM 408
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
+ A L+ WG+AL TA +ILNR+P K +PYE+W GR P+
Sbjct: 409 LLHAKLNFNLWGEALFTACHILNRIPMKKNEISPYELWKGRKPN 452
Score = 47.4 bits (111), Expect(2) = 5e-36
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
FID+ R+ YV+L+ +KSE F+ F YK EVENQL K
Sbjct: 315 FIDBXSRFTYVFLLKNKSETFNAFKVYKTEVENQLGK 351
>KYP33726.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 880
Score = 122 bits (307), Expect(2) = 5e-36
Identities = 55/104 (52%), Positives = 73/104 (70%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L ++IKILRSDRGGEY+S + E GI+ + T Y PQ NG+AER+NRTLLDM+ +M
Sbjct: 470 LERSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAM 529
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
+ + L WG+AL TA +ILNR+P K+ KTPYE+W R P+
Sbjct: 530 LISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPN 573
Score = 55.8 bits (133), Expect(2) = 5e-36
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
FIDD+ +Y YVYLI HKSE F+ F YKAEVENQLE+
Sbjct: 436 FIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLER 472
>KYP31709.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 714
Score = 122 bits (307), Expect(2) = 5e-36
Identities = 55/104 (52%), Positives = 73/104 (70%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L ++IKILRSDRGGEY+S + E GI+ + T Y PQ NG+AER+NRTLLDM+ +M
Sbjct: 468 LERSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAM 527
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
+ + L WG+AL TA +ILNR+P K+ KTPYE+W R P+
Sbjct: 528 LISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPN 571
Score = 55.8 bits (133), Expect(2) = 5e-36
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
FIDD+ +Y YVYLI HKSE F+ F YKAEVENQLE+
Sbjct: 434 FIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLER 470
>AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA93176.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 131 bits (330), Expect(2) = 6e-36
Identities = 66/104 (63%), Positives = 78/104 (75%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L K IK LRSDRGGEY S F ++ + GIV Q T TPQ NGV+ERRNRTLLDMVRSM
Sbjct: 440 LGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSM 499
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
M+Q +L +FWG L TA + LNRVPSKS+ KTPYE+W+G+ PS
Sbjct: 500 MSQTDLPLSFWGYTLETAAFTLNRVPSKSVDKTPYEIWTGKRPS 543
Score = 46.6 bits (109), Expect(2) = 6e-36
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
F +D+ RYGYVYL+ HKS++F+ F +++ EV+N L K
Sbjct: 406 FTNDFSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGK 442
>JAU83095.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Noccaea caerulescens]
Length = 138
Score = 129 bits (324), Expect = 7e-36
Identities = 62/104 (59%), Positives = 76/104 (73%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L K IK LRSDRGGEY S+ F + GIV Q T TPQ NGV+ERRNRTLLDMVRSM
Sbjct: 24 LGKTIKALRSDRGGEYLSQAFNDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSM 83
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
M+ +L +FWG A+ T+ + LNR PSKS+ KTPYE+W+G+ P+
Sbjct: 84 MSHTDLPLSFWGYAIETSAFTLNRCPSKSVQKTPYEIWTGKVPN 127
>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
AAX92956.1 retrotransposon protein, putative, Ty1-copia
sub-class [Oryza sativa Japonica Group] ABA92827.2
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1184
Score = 127 bits (320), Expect(2) = 2e-35
Identities = 65/104 (62%), Positives = 76/104 (73%)
Frame = -1
Query: 314 LRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMVRSM 135
L K IK LRSDRGGEY S F ++ + GIV Q T TPQ NGV+E RNRTLLDMVRSM
Sbjct: 531 LGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSM 590
Query: 134 MAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
M+Q NL +FWG AL T + LN VPSKS+ KTPYE+W+G+ PS
Sbjct: 591 MSQTNLLLSFWGYALETTAFTLNSVPSKSVDKTPYEIWTGKRPS 634
Score = 48.9 bits (115), Expect(2) = 2e-35
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
F DD+ RYGYVYL+ HKSE+F+ F ++ EV+N L K
Sbjct: 497 FTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGK 533
>AAD17357.1 contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] CAB77943.1 putative transposon protein
[Arabidopsis thaliana]
Length = 769
Score = 132 bits (332), Expect(2) = 2e-35
Identities = 64/107 (59%), Positives = 81/107 (75%)
Frame = -1
Query: 323 KISLRKNIKILRSDRGGEYTSEMFKSYCENVGIVRQYTMAYTPQQNGVAERRNRTLLDMV 144
K L K+IK LRSDRGGEY S++F + GIV Q T TPQ NGV+ERRN+TLLDMV
Sbjct: 228 KNKLGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQGNGVSERRNQTLLDMV 287
Query: 143 RSMMAQANLSTTFWGDALLTAVYILNRVPSKSIPKTPYEMWSGRTPS 3
RSMM+ +L ++FWG AL T V++LNR PSKS+ KTPYE+W+G+ P+
Sbjct: 288 RSMMSHTDLPSSFWGYALETYVFMLNRCPSKSVEKTPYEIWTGKVPN 334
Score = 44.3 bits (103), Expect(2) = 2e-35
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = -3
Query: 417 FIDDYLRYGYVYLISHKSEAFDCFLKYKAEVENQLEK 307
F DD+ RYGYVYL+ HK E+F+ +++ EV+N+L K
Sbjct: 197 FTDDFNRYGYVYLMKHKLESFEKSKEFQNEVKNKLGK 233