BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Magnolia22_contig00008491
         (1370 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_008806144.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   515   e-178
XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   513   e-178
XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   513   e-177
XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   513   e-177
XP_010935174.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   511   e-177
XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   498   e-172
XP_009382727.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   496   e-171
XP_020113503.1 RNA pseudouridine synthase 2, chloroplastic isofo...   495   e-171
XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   493   e-170
XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   488   e-168
XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   487   e-167
XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   478   e-164
XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   478   e-164
XP_019186766.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   479   e-164
XP_011628926.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   476   e-163
KZM89696.1 hypothetical protein DCAR_022941 [Daucus carota subsp...   476   e-163
XP_017215057.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   476   e-163
ERM96267.1 hypothetical protein AMTR_s00001p00157430 [Amborella ...   476   e-163
XP_012078835.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   475   e-163
XP_009798870.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   474   e-162

>XP_008806144.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Phoenix dactylifera]
          Length = 439

 Score =  515 bits (1326), Expect = e-178
 Identities = 265/379 (69%), Positives = 299/379 (78%), Gaps = 3/379 (0%)
 Frame = +2

Query: 233  RSNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSH 412
            R N+AGL  EE+V  G+  +RLDSWISSRIQ GVSRARIQSSIRSG V VNGR ++KVSH
Sbjct: 60   RGNHAGLRLEESVEIGAEKTRLDSWISSRIQ-GVSRARIQSSIRSGFVVVNGRTVDKVSH 118

Query: 413  VIKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVN 592
            +IK GD V CT+SELQPLRA  EDIPLDI+YEDA+VLVVNKPAHMVVHPAPGN NGTLV+
Sbjct: 119  IIKGGDMVSCTVSELQPLRAKAEDIPLDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVS 178

Query: 593  GILHHCKLPTVSLLNNVTFSKMEDCS---DNEFDSFSVDQNSDEDISSCICGASIRPGIV 763
             ILHHC+LPT++ ++N   S+ E+CS   DNE D++  DQ+S E +SS    A +RPGIV
Sbjct: 179  AILHHCRLPTIACVSNSKNSESEECSESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIV 238

Query: 764  HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPN 943
            HRLDKGTSGLLVVAKDEHSHAHL+EQFKLHTIHRVY+SL+ GVP PS G I++PIARD N
Sbjct: 239  HRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSN 298

Query: 944  NRIRMAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIP 1123
            NRIRMAAVS  +N RHAR A SRYKVI+VL G G +LVEWRLETGRTHQIRAHAKYLGIP
Sbjct: 299  NRIRMAAVSGTSNSRHARYAASRYKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIP 358

Query: 1124 LLGDEVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRF 1303
            LLGDEVYGGTKSMA                         PCLHA  LGFKHP TGEH+RF
Sbjct: 359  LLGDEVYGGTKSMALSLLRPRTSSSHHGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRF 418

Query: 1304 SCLPPPDFAELLSQLRSIS 1360
            SC PP DFAE+L QL+SIS
Sbjct: 419  SCPPPDDFAEVLDQLQSIS 437


>XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  513 bits (1322), Expect = e-178
 Identities = 272/418 (65%), Positives = 310/418 (74%), Gaps = 5/418 (1%)
 Frame = +2

Query: 131  LLRRNPRYGP-RFSKILRXXXXXXXXXXXXXXXFE----RSNYAGLVFEETVGSGSRISR 295
            LL R+PR    RF ++L                 E    R N+AG+  E+TV   S  SR
Sbjct: 23   LLHRSPRASTSRFFRVLNCSFSSTGESASDYQSSEPQNRRGNFAGVCLEDTVEISSVKSR 82

Query: 296  LDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHVIKMGDKVCCTISELQPLRAI 475
            +DSWISSRI  G+SRAR+QSSI+SGLV+VNGR I+KVSHVI+ GDKV CTI ELQPLRA 
Sbjct: 83   IDSWISSRIP-GISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAE 141

Query: 476  PEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCKLPTVSLLNNVTFSK 655
            PEDIPLDI+YED  VLVVNKPAHMVVHPAPGNANGTLVNGILHHC LP V+L N+   S+
Sbjct: 142  PEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSE 201

Query: 656  MEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 835
             +D SD+E D FS  Q S E+++S IC  S+RPGIVHRLDKGTSGLLVVAKDEHSHAHLS
Sbjct: 202  TDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 261

Query: 836  EQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIRMAAVSSRNNCRHARRAVSRY 1015
            EQFKLHTI+R+YLSL+ GVP  + G I+VPI RD +NRIRMAAV S N+ R AR A SRY
Sbjct: 262  EQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRY 321

Query: 1016 KVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXX 1195
            +V+EVLAG G ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGT++MA          
Sbjct: 322  RVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHS 381

Query: 1196 XXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLPPPDFAELLSQLRSISTDK 1369
                           PCLHAF LGFKHP TGE+M+FSC PP DF E+LSQLRSI  +K
Sbjct: 382  SFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEK 439


>XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  513 bits (1322), Expect = e-177
 Identities = 272/418 (65%), Positives = 310/418 (74%), Gaps = 5/418 (1%)
 Frame = +2

Query: 131  LLRRNPRYGP-RFSKILRXXXXXXXXXXXXXXXFE----RSNYAGLVFEETVGSGSRISR 295
            LL R+PR    RF ++L                 E    R N+AG+  E+TV   S  SR
Sbjct: 23   LLHRSPRASTSRFFRVLNCSFSSTGESASDYQSSEPQNRRGNFAGVCLEDTVEISSVKSR 82

Query: 296  LDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHVIKMGDKVCCTISELQPLRAI 475
            +DSWISSRI  G+SRAR+QSSI+SGLV+VNGR I+KVSHVI+ GDKV CTI ELQPLRA 
Sbjct: 83   IDSWISSRIP-GISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAE 141

Query: 476  PEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCKLPTVSLLNNVTFSK 655
            PEDIPLDI+YED  VLVVNKPAHMVVHPAPGNANGTLVNGILHHC LP V+L N+   S+
Sbjct: 142  PEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSE 201

Query: 656  MEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 835
             +D SD+E D FS  Q S E+++S IC  S+RPGIVHRLDKGTSGLLVVAKDEHSHAHLS
Sbjct: 202  TDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 261

Query: 836  EQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIRMAAVSSRNNCRHARRAVSRY 1015
            EQFKLHTI+R+YLSL+ GVP  + G I+VPI RD +NRIRMAAV S N+ R AR A SRY
Sbjct: 262  EQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRY 321

Query: 1016 KVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXX 1195
            +V+EVLAG G ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGT++MA          
Sbjct: 322  RVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHS 381

Query: 1196 XXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLPPPDFAELLSQLRSISTDK 1369
                           PCLHAF LGFKHP TGE+M+FSC PP DF E+LSQLRSI  +K
Sbjct: 382  SFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEK 439


>XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  513 bits (1322), Expect = e-177
 Identities = 272/418 (65%), Positives = 310/418 (74%), Gaps = 5/418 (1%)
 Frame = +2

Query: 131  LLRRNPRYGP-RFSKILRXXXXXXXXXXXXXXXFE----RSNYAGLVFEETVGSGSRISR 295
            LL R+PR    RF ++L                 E    R N+AG+  E+TV   S  SR
Sbjct: 23   LLHRSPRASTSRFFRVLNCSFSSTGESASDYQSSEPQNRRGNFAGVCLEDTVEISSVKSR 82

Query: 296  LDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHVIKMGDKVCCTISELQPLRAI 475
            +DSWISSRI  G+SRAR+QSSI+SGLV+VNGR I+KVSHVI+ GDKV CTI ELQPLRA 
Sbjct: 83   IDSWISSRIP-GISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAE 141

Query: 476  PEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCKLPTVSLLNNVTFSK 655
            PEDIPLDI+YED  VLVVNKPAHMVVHPAPGNANGTLVNGILHHC LP V+L N+   S+
Sbjct: 142  PEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSE 201

Query: 656  MEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 835
             +D SD+E D FS  Q S E+++S IC  S+RPGIVHRLDKGTSGLLVVAKDEHSHAHLS
Sbjct: 202  TDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 261

Query: 836  EQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIRMAAVSSRNNCRHARRAVSRY 1015
            EQFKLHTI+R+YLSL+ GVP  + G I+VPI RD +NRIRMAAV S N+ R AR A SRY
Sbjct: 262  EQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRY 321

Query: 1016 KVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXX 1195
            +V+EVLAG G ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGT++MA          
Sbjct: 322  RVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHS 381

Query: 1196 XXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLPPPDFAELLSQLRSISTDK 1369
                           PCLHAF LGFKHP TGE+M+FSC PP DF E+LSQLRSI  +K
Sbjct: 382  SFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEK 439


>XP_010935174.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Elaeis guineensis]
          Length = 449

 Score =  511 bits (1317), Expect = e-177
 Identities = 276/418 (66%), Positives = 309/418 (73%), Gaps = 9/418 (2%)
 Frame = +2

Query: 131  LLRRNPRYGPRFSKILRXXXXXXXXXXXXXXXFERS------NYAGLVFEETVGSGSRIS 292
            LLRR+PR   R SK L                F+R       N+AGL  EE V  G+  +
Sbjct: 33   LLRRDPR--DRVSKAL-CSSTSTSSRDSNPEPFQRQQRVITGNHAGLRLEERVEIGAEKT 89

Query: 293  RLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHVIKMGDKVCCTISELQPLRA 472
            RLDSWISSRI+  VSRARIQSSIRSGLVTVNGR ++KVSH+IK GD V CT+SELQPLRA
Sbjct: 90   RLDSWISSRIET-VSRARIQSSIRSGLVTVNGRTVDKVSHIIKGGDMVSCTVSELQPLRA 148

Query: 473  IPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCKLPTVSLLNNVTFS 652
              EDIPLDI+YEDAHVLVVNKPAHMVVHPAPGNANGTLVN ILHHC+LPT++ +N    S
Sbjct: 149  EAEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPTIACVNKSKIS 208

Query: 653  KMEDCS---DNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLDKGTSGLLVVAKDEHSH 823
            + EDCS   D+E D++  DQ+S E ISS    A +RPGIVHRLDKGTSGLLVVAKDEHSH
Sbjct: 209  ESEDCSESSDSEMDNYYFDQSSVEGISSENSEALVRPGIVHRLDKGTSGLLVVAKDEHSH 268

Query: 824  AHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIRMAAVSSRNNCRHARRA 1003
            AHL+EQFKLHTIHRVY+SL+ GVP PS G I++PIARD NNRIRMAAV   +N RHAR A
Sbjct: 269  AHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMAAVLGTSNSRHARYA 328

Query: 1004 VSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXX 1183
             SRYKVIE+L   G ALVEWRLETGRTHQIRAHAKY+GIPLLGDEVYGGTKSMA      
Sbjct: 329  ASRYKVIELLGRGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRP 388

Query: 1184 XXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLPPPDFAELLSQLRSI 1357
                               PCLHA  LGFKHP TGE++RFSC PP DFAE+L QL+SI
Sbjct: 389  RTSSSHHGHLSQILSKLQRPCLHASSLGFKHPHTGEYLRFSCPPPDDFAEVLDQLQSI 446


>XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Vitis vinifera] CBI18920.3 unnamed protein product,
            partial [Vitis vinifera]
          Length = 433

 Score =  498 bits (1282), Expect = e-172
 Identities = 268/416 (64%), Positives = 303/416 (72%), Gaps = 3/416 (0%)
 Frame = +2

Query: 131  LLRRNPRYGPRFSKILRXXXXXXXXXXXXXXXFERSNYAGLVFEETV---GSGSRISRLD 301
            L  RNP+   R  +ILR                 R+NYAG+  EETV    S S   RLD
Sbjct: 22   LFPRNPKSCSRVFRILRACSNSTDEPLVSVSG-RRTNYAGVRLEETVVDVNSDSGKLRLD 80

Query: 302  SWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHVIKMGDKVCCTISELQPLRAIPE 481
            SWISSRI  G+SRAR+QSSIRSGLV+VN R ++KVSHVI+ GDKV CTISELQPLRA PE
Sbjct: 81   SWISSRII-GISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPE 139

Query: 482  DIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCKLPTVSLLNNVTFSKME 661
            DIPLDI+YED HVLVVNKPAHMVVHPAPGNA+GTLVNGILHHC LPTV+L N    S+ +
Sbjct: 140  DIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVALPNRD--SEED 197

Query: 662  DCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQ 841
            D SD+EF+SF+  QN         C  +IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQ
Sbjct: 198  DISDDEFNSFAAGQNCGT------CETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQ 251

Query: 842  FKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIRMAAVSSRNNCRHARRAVSRYKV 1021
            FKLH+IHRVY+SL+SGVP P  G +++P+ RDPNNRIRM AV   +N   AR A SRYKV
Sbjct: 252  FKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKV 311

Query: 1022 IEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXX 1201
            IE+LA  G ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MA            
Sbjct: 312  IEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSH 371

Query: 1202 XXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLPPPDFAELLSQLRSISTDK 1369
                         PCLHA  LGF HP+TG+++ FSC PP DFAE+LS LR IST+K
Sbjct: 372  HGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEK 427


>XP_009382727.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Musa acuminata subsp. malaccensis] XP_009382728.1
            PREDICTED: RNA pseudouridine synthase 2, chloroplastic
            isoform X1 [Musa acuminata subsp. malaccensis]
          Length = 440

 Score =  496 bits (1276), Expect = e-171
 Identities = 252/379 (66%), Positives = 289/379 (76%), Gaps = 3/379 (0%)
 Frame = +2

Query: 233  RSNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSH 412
            R N+AG+  EE V  G+  +R+DSWISSRI+ GVSRARIQSSIRSGLV VNGR +NKVSH
Sbjct: 57   RVNHAGVRLEERVEVGAEKTRIDSWISSRIR-GVSRARIQSSIRSGLVAVNGRTVNKVSH 115

Query: 413  VIKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVN 592
            +IK GD V C IS+L PL+A PED+PLDI+YED HV+VVNKPAHMVVHPAPGNANGTLVN
Sbjct: 116  IIKGGDMVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVN 175

Query: 593  GILHHCKLPTVSLLNNVTFSKMEDCS---DNEFDSFSVDQNSDEDISSCICGASIRPGIV 763
             ILHHC+LP  +  NN+  S  E+CS   D++ +    DQ+S E++      A +RPGIV
Sbjct: 176  AILHHCRLPIRAFANNIQISDTEECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIV 235

Query: 764  HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPN 943
            HRLDKGTSGLLVVAKD+HSHAHL+EQFK HTIHRVY+SL+SGVP PSYG I++PIARD N
Sbjct: 236  HRLDKGTSGLLVVAKDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSN 295

Query: 944  NRIRMAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIP 1123
            NRIRM AVS  NN RHAR A SRYKVIE   G G ALV+WRLETGRTHQIRAHAKYLGIP
Sbjct: 296  NRIRMVAVSGLNNSRHARYAASRYKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIP 355

Query: 1124 LLGDEVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRF 1303
            LLGDEVYGGTK MA                         PCLHAF +GFKHP TGE ++F
Sbjct: 356  LLGDEVYGGTKDMALSLLRPRTPPTYHGHLSNIISKLQRPCLHAFSIGFKHPHTGEFLQF 415

Query: 1304 SCLPPPDFAELLSQLRSIS 1360
            SC PP DF+++L QLRSIS
Sbjct: 416  SCPPPDDFSKVLDQLRSIS 434


>XP_020113503.1 RNA pseudouridine synthase 2, chloroplastic isoform X1 [Ananas
            comosus] OAY68405.1 RNA pseudouridine synthase 2,
            chloroplastic [Ananas comosus]
          Length = 430

 Score =  495 bits (1275), Expect = e-171
 Identities = 262/418 (62%), Positives = 308/418 (73%), Gaps = 4/418 (0%)
 Frame = +2

Query: 122  AKTLLRRNPRYGPRFSKILRXXXXXXXXXXXXXXXFE-RSNYAGLVFEETVGSGSRISRL 298
            A + LRRNPRY     ++LR                  RS++AG   EE V  GS  SRL
Sbjct: 14   ALSSLRRNPRY-----RVLRAMCSSSALDPDPNPSPRLRSSHAGARLEEAVEVGSGRSRL 68

Query: 299  DSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHVIKMGDKVCCTISELQPLRAIP 478
            D+W++SRI+ GVSRARIQSSIRSGLV VNGR ++KVSH++K GD + CT+SELQPLRA  
Sbjct: 69   DAWLASRIR-GVSRARIQSSIRSGLVAVNGRTVDKVSHMVKGGDMISCTVSELQPLRAEA 127

Query: 479  EDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCKLPTVSLLNNVTFSKM 658
            EDIPLDI+YED HVLVVNKPAHMVVHPAPGNANGTLVN ILHHC+LP V+ +N+ T S+ 
Sbjct: 128  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPMVTCVNDSTMSES 187

Query: 659  E---DCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLDKGTSGLLVVAKDEHSHAH 829
            +   D SD E D +  DQ S E++S  +  A +RPGIVHRLDKGTSGLLVVAKDEHSHAH
Sbjct: 188  DESLDSSDEEIDVYHADQFSTEELSLEVPEALVRPGIVHRLDKGTSGLLVVAKDEHSHAH 247

Query: 830  LSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIRMAAVSSRNNCRHARRAVS 1009
            L+EQFK HTI+RVY+SL++GVP P    I++PIARDPNNR+RM A+S  N+ RHAR A S
Sbjct: 248  LAEQFKQHTINRVYISLTTGVPNPYSARIEIPIARDPNNRVRMVAISGSNH-RHARYAAS 306

Query: 1010 RYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXX 1189
            RY+VIEVLAG G ALV+WRLETGRTHQIRAHAKYLG+PLLGDEVYGGTKSMA        
Sbjct: 307  RYEVIEVLAGGGSALVKWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLKPRT 366

Query: 1190 XXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLPPPDFAELLSQLRSIST 1363
                             PCLHA  LGF+HPQTGE +RFSC PP DF+E++ QLR I+T
Sbjct: 367  PSSHHGHLSHMISKLDRPCLHALSLGFEHPQTGEFLRFSCPPPDDFSEVVDQLRGINT 424


>XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Juglans regia]
          Length = 446

 Score =  493 bits (1270), Expect = e-170
 Identities = 254/379 (67%), Positives = 283/379 (74%)
 Frame = +2

Query: 233  RSNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSH 412
            R+N+ G+  E+TV   S   RLDSWISSRI  G+SRAR+QSSIRSGLV VNGR ++KVSH
Sbjct: 64   RANFGGVQLEDTVSLNSGKLRLDSWISSRI-GGISRARVQSSIRSGLVAVNGRVVDKVSH 122

Query: 413  VIKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVN 592
             +K GDKV CTISELQPLRA+PEDIPLDI++ED HVLVVNKPAHMVVHPAPGNA GTLVN
Sbjct: 123  NVKTGDKVNCTISELQPLRAVPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVN 182

Query: 593  GILHHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRL 772
            G+LHHC  P V+  N    S  ED SD+E  SFS  QN ++ + S   GASIRPGIVHRL
Sbjct: 183  GVLHHCSPPVVAFSNEEVLSDAEDISDDELSSFSAGQNPNDGLYSRRSGASIRPGIVHRL 242

Query: 773  DKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRI 952
            DKGTSGLLVVAKDEHSHA+LSEQFKLHTI R+Y+SL+SGVP P  G ++VPI RD NNRI
Sbjct: 243  DKGTSGLLVVAKDEHSHANLSEQFKLHTIQRLYVSLTSGVPSPMAGRVEVPIGRDLNNRI 302

Query: 953  RMAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLG 1132
            RMAA+   N  R AR A SRYKVIE+LAG   ALVEWRLETGRTHQIRAHAKYLGIPLLG
Sbjct: 303  RMAAIPGSNISRQARHAASRYKVIEILAGGSSALVEWRLETGRTHQIRAHAKYLGIPLLG 362

Query: 1133 DEVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCL 1312
            DEVYGGTKSMA                         PCLHA  LGF HP T E++ F C 
Sbjct: 363  DEVYGGTKSMALSLLRPRTPPSRHGQLLQLVSRLERPCLHALALGFMHPHTMENVYFQCP 422

Query: 1313 PPPDFAELLSQLRSISTDK 1369
            PP DFAE+L QLR I T K
Sbjct: 423  PPADFAEILGQLRKIGTVK 441


>XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Citrus sinensis]
          Length = 421

 Score =  488 bits (1256), Expect = e-168
 Identities = 255/378 (67%), Positives = 286/378 (75%)
 Frame = +2

Query: 236  SNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHV 415
            +NYAG+  EETV + +   RLD+WISSRI +G+SRAR+QSSIRSGLV++NG+ ++KVSH 
Sbjct: 53   ANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHN 111

Query: 416  IKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNG 595
            +K GD V CTISELQPLRA  EDIPLDI+YED +VLVVNKPAHMVVHPAPGNA GTLVNG
Sbjct: 112  VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171

Query: 596  ILHHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLD 775
            ILHHC LPT++  N   FS  ED SD            DE+ SS I GASIRPGIVHRLD
Sbjct: 172  ILHHCSLPTLASSNQEAFSDAEDISD------------DEEFSSSISGASIRPGIVHRLD 219

Query: 776  KGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIR 955
            KGTSGLLVVAKDEHSHAHLSEQFKLHTI RVY+SL+SGVP  S G I+VPI+RDPNNRIR
Sbjct: 220  KGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIR 279

Query: 956  MAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGD 1135
            MAA+   N    AR A SRYKVIE+LAG G ALVEWRLETGRTHQIRAHAKY+GIPLLGD
Sbjct: 280  MAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGD 339

Query: 1136 EVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLP 1315
            EVYGGTK+MA                         PCLHA  LGF HP T E ++FSC P
Sbjct: 340  EVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPP 399

Query: 1316 PPDFAELLSQLRSISTDK 1369
            P DFAE+LSQLR I T+K
Sbjct: 400  PADFAEILSQLREIGTEK 417


>XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Ziziphus
            jujuba]
          Length = 442

 Score =  487 bits (1254), Expect = e-167
 Identities = 253/379 (66%), Positives = 286/379 (75%)
 Frame = +2

Query: 233  RSNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSH 412
            R+NY+G+  EETV   SR  RLDSWISSR+ +G+SRAR+QSSIRSGLV+VNGR ++KVSH
Sbjct: 70   RNNYSGVRLEETVAVDSRKLRLDSWISSRV-SGISRARVQSSIRSGLVSVNGRIVDKVSH 128

Query: 413  VIKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVN 592
             +K GD+V CTISELQPLRA PE+IPLDI+YED HVLVVNKPAHMVVHPAPGNA GTLVN
Sbjct: 129  NVKAGDRVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVN 188

Query: 593  GILHHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRL 772
            GILHHC LPTV+  N+   S  ED  D+    FSVDQ      SS  C AS+RPGIVHRL
Sbjct: 189  GILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQ------SSSTCQASVRPGIVHRL 242

Query: 773  DKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRI 952
            DKGTSGLLVVAK+E SHAHLS+QFKLHTIHRVY+SL+SGVP P  G +D+PI RD NNRI
Sbjct: 243  DKGTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRI 302

Query: 953  RMAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLG 1132
            RM A+      +  R A SRYKVIEVLAG G ALVEWRLETGRTHQIRAHAK+LGIPLLG
Sbjct: 303  RMTAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLG 362

Query: 1133 DEVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCL 1312
            DE+YGGTKSMA                         PCLHA  L FKHP TG+++ FSC 
Sbjct: 363  DELYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCP 422

Query: 1313 PPPDFAELLSQLRSISTDK 1369
            PP DFAE+L+QLR  ST K
Sbjct: 423  PPSDFAEILNQLRKFSTAK 441


>XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum lycopersicum]
          Length = 431

 Score =  478 bits (1231), Expect = e-164
 Identities = 246/379 (64%), Positives = 290/379 (76%)
 Frame = +2

Query: 233  RSNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSH 412
            RSNY+G+  EETV S +   RLDSW+SSRI +GVSRAR+QSSIRSGLV+VNGR  +KVSH
Sbjct: 52   RSNYSGVKLEETVDSKTGKLRLDSWVSSRI-DGVSRARVQSSIRSGLVSVNGRVTDKVSH 110

Query: 413  VIKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVN 592
            ++K GDKV CTI++L+PLRA PEDIPLDI+YED HVLVVNKPAHMVVHPAPGNA GTLV+
Sbjct: 111  MVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVS 170

Query: 593  GILHHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRL 772
            GILHHC LPTVS       S  ED SD+E + FS +++ + D SS +C +S+RPGIVHRL
Sbjct: 171  GILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRL 230

Query: 773  DKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRI 952
            DKGTSGLLVVAK+EHS A L+EQFK HTI RVY+S++ GVP    G +D+PI RD NNRI
Sbjct: 231  DKGTSGLLVVAKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRI 290

Query: 953  RMAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLG 1132
            RMAA+        +R AVSRYKVIE LAG G ALVEWRLETGRTHQIRAHAK+LGIPL+G
Sbjct: 291  RMAAIPGTPKSGKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMG 350

Query: 1133 DEVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCL 1312
            DEVYGGTK+MA                         PCLHA  LGF+HP TGE++ F+ L
Sbjct: 351  DEVYGGTKNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRL 410

Query: 1313 PPPDFAELLSQLRSISTDK 1369
            PPPDFAE+LS+LR+I T+K
Sbjct: 411  PPPDFAEILSELRAIKTEK 429


>XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 436

 Score =  478 bits (1231), Expect = e-164
 Identities = 246/379 (64%), Positives = 290/379 (76%)
 Frame = +2

Query: 233  RSNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSH 412
            RSNY+G+  EETV S +   RLDSW+SSRI +GVSRAR+QSSIRSGLV+VNGR  +KVSH
Sbjct: 52   RSNYSGVKLEETVDSKTGKLRLDSWVSSRI-DGVSRARVQSSIRSGLVSVNGRVTDKVSH 110

Query: 413  VIKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVN 592
            ++K GDKV CTI++L+PLRA PEDIPLDI+YED HVLVVNKPAHMVVHPAPGNA GTLV+
Sbjct: 111  MVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVS 170

Query: 593  GILHHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRL 772
            GILHHC LPTVS       S  ED SD+E + FS +++ + D SS +C +S+RPGIVHRL
Sbjct: 171  GILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRL 230

Query: 773  DKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRI 952
            DKGTSGLLVVAK+EHS A L+EQFK HTI RVY+S++ GVP    G +D+PI RD NNRI
Sbjct: 231  DKGTSGLLVVAKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRI 290

Query: 953  RMAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLG 1132
            RMAA+        +R AVSRYKVIE LAG G ALVEWRLETGRTHQIRAHAK+LGIPL+G
Sbjct: 291  RMAAIPGTPKSGKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMG 350

Query: 1133 DEVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCL 1312
            DEVYGGTK+MA                         PCLHA  LGF+HP TGE++ F+ L
Sbjct: 351  DEVYGGTKNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRL 410

Query: 1313 PPPDFAELLSQLRSISTDK 1369
            PPPDFAE+LS+LR+I T+K
Sbjct: 411  PPPDFAEILSELRAIKTEK 429


>XP_019186766.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Ipomoea nil]
          Length = 453

 Score =  479 bits (1232), Expect = e-164
 Identities = 250/378 (66%), Positives = 284/378 (75%)
 Frame = +2

Query: 236  SNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHV 415
            +NY+G+  EETV   S   RLDSWISSRI +GVSRAR+QSSIRSGLVTVNGR I+KVSH 
Sbjct: 75   TNYSGVKLEETVEPSSGKLRLDSWISSRI-DGVSRARVQSSIRSGLVTVNGRIIDKVSHT 133

Query: 416  IKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNG 595
            +K GDKV CTI+ELQPL A PED+PLDI+YED HVLVVNKPAHMVVHPAPGN  GTLVNG
Sbjct: 134  VKRGDKVNCTIAELQPLTAEPEDMPLDIVYEDDHVLVVNKPAHMVVHPAPGNPTGTLVNG 193

Query: 596  ILHHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLD 775
            ILHHC LP  S       S  E   D+E  +FS +Q+      S I  ASIRPGIVHRLD
Sbjct: 194  ILHHCSLPVASFPYQEVLSDGEAALDDELSTFSSEQDYVGGDYSAIGEASIRPGIVHRLD 253

Query: 776  KGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIR 955
            KGTSGLLVVAKDE+SHAHL+EQFK H+I RVY++L+ GVP P+ G ID+PI RDPNNR+R
Sbjct: 254  KGTSGLLVVAKDEYSHAHLAEQFKKHSIKRVYVALTCGVPTPASGRIDIPIGRDPNNRLR 313

Query: 956  MAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGD 1135
            MAA+S  +     R A SRYKVIE+LAG G ALVEWRLETGRTHQIRAHAKYLGIPLLGD
Sbjct: 314  MAAISGFSKNGKTRHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGD 373

Query: 1136 EVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLP 1315
            EVYGGTKSMA                         PCLHA  LGF+HP+TGE++ F+ LP
Sbjct: 374  EVYGGTKSMALSLLQQRNPSEFHGKLLQLISRLERPCLHALTLGFRHPKTGENVHFTQLP 433

Query: 1316 PPDFAELLSQLRSISTDK 1369
            P DFAE+LS LR+IST+K
Sbjct: 434  PTDFAEVLSDLRTISTEK 451


>XP_011628926.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Amborella
            trichopoda]
          Length = 437

 Score =  476 bits (1226), Expect = e-163
 Identities = 246/372 (66%), Positives = 279/372 (75%)
 Frame = +2

Query: 242  YAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHVIK 421
            Y GL FE +V  GS+  R+DSW+S+RI + VSRARIQSSIR G V VNG PI KVSH++K
Sbjct: 67   YGGLQFESSVAVGSKKERIDSWLSARIGD-VSRARIQSSIRQGFVKVNGLPITKVSHIVK 125

Query: 422  MGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNGIL 601
            +GD V CT+S LQPL+A PED+PLDIIYED HVLVVNKPAHMVVHPAPGNANGTLVNGIL
Sbjct: 126  VGDMVDCTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGIL 185

Query: 602  HHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLDKG 781
            HHC LP   L +    S+ +D  DN    F+ D  S +      C +SIRPGIVHRLDKG
Sbjct: 186  HHCTLPAFGLPDGELTSESDDECDNGLTMFNPDPISTQ------CRSSIRPGIVHRLDKG 239

Query: 782  TSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIRMA 961
            TSGLLVVAK+EHSHAHLSEQFKLHTIHR Y+SL+ GVP PS G I++PIARD NNRIRMA
Sbjct: 240  TSGLLVVAKNEHSHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMA 299

Query: 962  AVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEV 1141
            AVS +NN R AR A SRY V+EVLAG G ALVEWRL+TGRTHQIR HAKY+G PLLGDEV
Sbjct: 300  AVSGQNNTRKARLATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEV 359

Query: 1142 YGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLPPP 1321
            YGGTKSMA                         PCLHAF LGFKHP + E++ F+C PPP
Sbjct: 360  YGGTKSMALSRLRPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPP 419

Query: 1322 DFAELLSQLRSI 1357
            DFAE+L QL+SI
Sbjct: 420  DFAEVLRQLQSI 431


>KZM89696.1 hypothetical protein DCAR_022941 [Daucus carota subsp. sativus]
          Length = 429

 Score =  476 bits (1225), Expect = e-163
 Identities = 244/378 (64%), Positives = 281/378 (74%)
 Frame = +2

Query: 236  SNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHV 415
            SNYAG+  EE+V S +   RLD+WISSRI +G+SRAR+QS+I+SGLVTVNGR I+KVSH 
Sbjct: 42   SNYAGVALEESVNSTTTKVRLDTWISSRI-DGISRARVQSTIKSGLVTVNGRIIDKVSHK 100

Query: 416  IKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNG 595
            +K GDKV CTISELQPL+A P+DIPLDI+YED H+LVVNKP HMVVHPAPGNA GTLVN 
Sbjct: 101  LKSGDKVSCTISELQPLKAQPQDIPLDILYEDDHLLVVNKPPHMVVHPAPGNATGTLVNA 160

Query: 596  ILHHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLD 775
            ILHHC LP  S       S  +D S  E  S+S D    E   S +  ASIRPGIVHRLD
Sbjct: 161  ILHHCCLPVASFPIMEIPSDEDDVSQGEISSYSADDTYLEPSFSGLTEASIRPGIVHRLD 220

Query: 776  KGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIR 955
            KGTSGLLVVAKDEHSHAHLSEQFK  T+ RVY+SL+ GVP+P+ G +++PI+RD NNRIR
Sbjct: 221  KGTSGLLVVAKDEHSHAHLSEQFKQRTVQRVYISLTCGVPFPALGRVNIPISRDLNNRIR 280

Query: 956  MAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGD 1135
            MAAV     C   R A SR++VIE+LAG GCALVEWRLETGRTHQIRAHAKYLGIPLLGD
Sbjct: 281  MAAVVGSGKCGKTRHAASRFRVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGD 340

Query: 1136 EVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLP 1315
            EVYGGTKS+A                         PCLHA  LGF HP T + + FSCLP
Sbjct: 341  EVYGGTKSLALDRLQQKNSSNLPGKLLQLISNLERPCLHALTLGFMHPHTRKQVHFSCLP 400

Query: 1316 PPDFAELLSQLRSISTDK 1369
            P DFAE+LS LRS++T+K
Sbjct: 401  PVDFAEVLSVLRSVNTEK 418


>XP_017215057.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Daucus carota
            subsp. sativus]
          Length = 431

 Score =  476 bits (1225), Expect = e-163
 Identities = 244/378 (64%), Positives = 281/378 (74%)
 Frame = +2

Query: 236  SNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHV 415
            SNYAG+  EE+V S +   RLD+WISSRI +G+SRAR+QS+I+SGLVTVNGR I+KVSH 
Sbjct: 46   SNYAGVALEESVNSTTTKVRLDTWISSRI-DGISRARVQSTIKSGLVTVNGRIIDKVSHK 104

Query: 416  IKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNG 595
            +K GDKV CTISELQPL+A P+DIPLDI+YED H+LVVNKP HMVVHPAPGNA GTLVN 
Sbjct: 105  LKSGDKVSCTISELQPLKAQPQDIPLDILYEDDHLLVVNKPPHMVVHPAPGNATGTLVNA 164

Query: 596  ILHHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLD 775
            ILHHC LP  S       S  +D S  E  S+S D    E   S +  ASIRPGIVHRLD
Sbjct: 165  ILHHCCLPVASFPIMEIPSDEDDVSQGEISSYSADDTYLEPSFSGLTEASIRPGIVHRLD 224

Query: 776  KGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIR 955
            KGTSGLLVVAKDEHSHAHLSEQFK  T+ RVY+SL+ GVP+P+ G +++PI+RD NNRIR
Sbjct: 225  KGTSGLLVVAKDEHSHAHLSEQFKQRTVQRVYISLTCGVPFPALGRVNIPISRDLNNRIR 284

Query: 956  MAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGD 1135
            MAAV     C   R A SR++VIE+LAG GCALVEWRLETGRTHQIRAHAKYLGIPLLGD
Sbjct: 285  MAAVVGSGKCGKTRHAASRFRVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGD 344

Query: 1136 EVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLP 1315
            EVYGGTKS+A                         PCLHA  LGF HP T + + FSCLP
Sbjct: 345  EVYGGTKSLALDRLQQKNSSNLPGKLLQLISNLERPCLHALTLGFMHPHTRKQVHFSCLP 404

Query: 1316 PPDFAELLSQLRSISTDK 1369
            P DFAE+LS LRS++T+K
Sbjct: 405  PVDFAEVLSVLRSVNTEK 422


>ERM96267.1 hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  476 bits (1226), Expect = e-163
 Identities = 246/372 (66%), Positives = 279/372 (75%)
 Frame = +2

Query: 242  YAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHVIK 421
            Y GL FE +V  GS+  R+DSW+S+RI + VSRARIQSSIR G V VNG PI KVSH++K
Sbjct: 67   YGGLQFESSVAVGSKKERIDSWLSARIGD-VSRARIQSSIRQGFVKVNGLPITKVSHIVK 125

Query: 422  MGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNGIL 601
            +GD V CT+S LQPL+A PED+PLDIIYED HVLVVNKPAHMVVHPAPGNANGTLVNGIL
Sbjct: 126  VGDMVDCTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGIL 185

Query: 602  HHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLDKG 781
            HHC LP   L +    S+ +D  DN    F+ D  S +      C +SIRPGIVHRLDKG
Sbjct: 186  HHCTLPAFGLPDGELTSESDDECDNGLTMFNPDPISTQ------CRSSIRPGIVHRLDKG 239

Query: 782  TSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIRMA 961
            TSGLLVVAK+EHSHAHLSEQFKLHTIHR Y+SL+ GVP PS G I++PIARD NNRIRMA
Sbjct: 240  TSGLLVVAKNEHSHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMA 299

Query: 962  AVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEV 1141
            AVS +NN R AR A SRY V+EVLAG G ALVEWRL+TGRTHQIR HAKY+G PLLGDEV
Sbjct: 300  AVSGQNNTRKARLATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEV 359

Query: 1142 YGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLPPP 1321
            YGGTKSMA                         PCLHAF LGFKHP + E++ F+C PPP
Sbjct: 360  YGGTKSMALSRLRPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPP 419

Query: 1322 DFAELLSQLRSI 1357
            DFAE+L QL+SI
Sbjct: 420  DFAEVLRQLQSI 431


>XP_012078835.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha
            curcas] XP_012078836.1 PREDICTED: RNA pseudouridine
            synthase 2, chloroplastic [Jatropha curcas]
          Length = 426

 Score =  475 bits (1223), Expect = e-163
 Identities = 256/414 (61%), Positives = 286/414 (69%)
 Frame = +2

Query: 128  TLLRRNPRYGPRFSKILRXXXXXXXXXXXXXXXFERSNYAGLVFEETVGSGSRISRLDSW 307
            +   RNPR  P  SK+L                 +R NYAGL  EETV + S   RLDSW
Sbjct: 26   SFFHRNPRVFPS-SKLLLRMFTVCSGSSEKQNQNQRINYAGLRLEETVEAKSGKLRLDSW 84

Query: 308  ISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSHVIKMGDKVCCTISELQPLRAIPEDI 487
            ISSRI +G+SRAR+QSSI+SGLV VNGR ++KVSH +K+GDKV CTISELQPLRA  EDI
Sbjct: 85   ISSRI-SGISRARVQSSIKSGLVAVNGRVVDKVSHSVKVGDKVICTISELQPLRAEAEDI 143

Query: 488  PLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCKLPTVSLLNNVTFSKMEDC 667
            PLDIIYED H+LVVNKP HMVVHPAPGN  GTLVNGILHHC LPTV   +    S +ED 
Sbjct: 144  PLDIIYEDDHLLVVNKPPHMVVHPAPGNPTGTLVNGILHHCSLPTVVTSSQEVLSDVEDI 203

Query: 668  SDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFK 847
            SD            DE   S  C +S+RPGIVHRLDKGTSGLLVVAKDEH+HAHLSEQFK
Sbjct: 204  SD------------DEGSCSSSCVSSVRPGIVHRLDKGTSGLLVVAKDEHAHAHLSEQFK 251

Query: 848  LHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRIRMAAVSSRNNCRHARRAVSRYKVIE 1027
             HTI RVY+SL+SGVP    G ID+PI RD NNRIRMAA+S      HAR A SRYKVIE
Sbjct: 252  QHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMAAISGPVKQGHARHAASRYKVIE 311

Query: 1028 VLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXXX 1207
            +LAG G ALVEWRLETGRTHQIRAHAKY+GIPLLGDEVYG T  MA              
Sbjct: 312  ILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGSTTGMALSLLRPRIPASFQN 371

Query: 1208 XXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCLPPPDFAELLSQLRSISTDK 1369
                       PCLHA  LGF HP+TG+ + FSC PPPDFA +LSQLR +  +K
Sbjct: 372  QLSSLLSGLERPCLHALSLGFTHPRTGKEINFSCPPPPDFAGVLSQLREMDMEK 425


>XP_009798870.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            sylvestris]
          Length = 431

 Score =  474 bits (1219), Expect = e-162
 Identities = 247/379 (65%), Positives = 284/379 (74%)
 Frame = +2

Query: 233  RSNYAGLVFEETVGSGSRISRLDSWISSRIQNGVSRARIQSSIRSGLVTVNGRPINKVSH 412
            RSNY+G+  EETV   +   RLDSW+SSRI NG+SRAR+QSSIRSGLV+VNGR  +KVSH
Sbjct: 52   RSNYSGVKLEETVDVKTGKLRLDSWVSSRI-NGISRARVQSSIRSGLVSVNGRVTDKVSH 110

Query: 413  VIKMGDKVCCTISELQPLRAIPEDIPLDIIYEDAHVLVVNKPAHMVVHPAPGNANGTLVN 592
             +K GDKV CTI++L+PLRA PEDIPLDI+YED HVLVVNKPAHMVVHPAPGNA GTLV+
Sbjct: 111  TVKGGDKVNCTIADLKPLRAEPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVS 170

Query: 593  GILHHCKLPTVSLLNNVTFSKMEDCSDNEFDSFSVDQNSDEDISSCICGASIRPGIVHRL 772
            GILHHC LPTVS       S +ED SD+E + FS DQ+     SS +C  S+RPGIVHRL
Sbjct: 171  GILHHCSLPTVSFPGEEVLSDVEDDSDDELNLFSTDQSPYGVDSSVVCEPSVRPGIVHRL 230

Query: 773  DKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYLSLSSGVPYPSYGVIDVPIARDPNNRI 952
            DKGTSGLLVVAK E S A+L+EQFK HTI RVY+S++ GVP    G ID+PI RD NNRI
Sbjct: 231  DKGTSGLLVVAKTEQSLANLAEQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRI 290

Query: 953  RMAAVSSRNNCRHARRAVSRYKVIEVLAGVGCALVEWRLETGRTHQIRAHAKYLGIPLLG 1132
            RM A+   +    AR A SRYKVIE LAG G ALVEWRLETGRTHQIRAHAKYLGIPLLG
Sbjct: 291  RMIAIPGSHKGGRARNAASRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLG 350

Query: 1133 DEVYGGTKSMAXXXXXXXXXXXXXXXXXXXXXXXXXPCLHAFRLGFKHPQTGEHMRFSCL 1312
            DEVYGGTK+MA                         PCLHA  LGF+HP TGE++ F+ L
Sbjct: 351  DEVYGGTKNMALSLLQPKTPPRSHGKLSQLISGIERPCLHALTLGFRHPYTGENIHFTRL 410

Query: 1313 PPPDFAELLSQLRSISTDK 1369
            PP DFAE+LS+LR+IST+K
Sbjct: 411  PPADFAEVLSELRAISTEK 429