BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00028440
         (240 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    95   7e-19
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]            92   3e-18
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...    91   1e-16
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...    91   1e-16
emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]    88   1e-16

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score = 94.7 bits (234), Expect(2) = 7e-19
 Identities = 41/66 (62%), Positives = 55/66 (83%)
 Frame = -1

Query: 237  MSRIPYVSAVGNLMYAMICTRAYIGFALGVMSKYLSNPGKEH*ESVKWIIKYLRGTTDKC 58
            M+++PY SAVG+LMYAM+CTR  I  A+GV+S++L NPGKEH E+VKWI++YLRGTT  C
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 57   IFAGGA 40
            +  GG+
Sbjct: 1166 LCFGGS 1171



 Score = 23.9 bits (50), Expect(2) = 7e-19
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 46   GSSIMQSKLQKCIAL 2
            G+   QSKLQKC+AL
Sbjct: 1203 GAISWQSKLQKCVAL 1217


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score = 92.4 bits (228), Expect(2) = 3e-18
 Identities = 41/64 (64%), Positives = 53/64 (82%)
 Frame = -1

Query: 237  MSRIPYVSAVGNLMYAMICTRAYIGFALGVMSKYLSNPGKEH*ESVKWIIKYLRGTTDKC 58
            M RIPY SAVG+LMYAM+CTR  I  A+GV+S++LSNPGKEH ++VKWI++YLRGT+  C
Sbjct: 1107 MERIPYASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLC 1166

Query: 57   IFAG 46
            +  G
Sbjct: 1167 LCFG 1170



 Score = 24.3 bits (51), Expect(2) = 3e-18
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 61   VHLCRGSSIMQSKLQKCIAL 2
            ++   G+   QSKLQKC+AL
Sbjct: 1199 INFSGGAVSWQSKLQKCVAL 1218


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 38/65 (58%), Positives = 53/65 (81%)
 Frame = -1

Query: 240  YMSRIPYVSAVGNLMYAMICTRAYIGFALGVMSKYLSNPGKEH*ESVKWIIKYLRGTTDK 61
            YMSR+PY SAVG+LMYAM+C+R  + +A+ ++S+Y+SNPGKEH  +V+WI +YLRGTT  
Sbjct: 1111 YMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYS 1170

Query: 60   CIFAG 46
            C+  G
Sbjct: 1171 CLKFG 1175


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 38/65 (58%), Positives = 53/65 (81%)
 Frame = -1

Query: 240  YMSRIPYVSAVGNLMYAMICTRAYIGFALGVMSKYLSNPGKEH*ESVKWIIKYLRGTTDK 61
            YMSR+PY SAVG+LMYAM+C+R  + +A+ ++S+Y+SNPGKEH  +V+WI +YLRGTT  
Sbjct: 1111 YMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYS 1170

Query: 60   CIFAG 46
            C+  G
Sbjct: 1171 CLKFG 1175


>emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]
          Length = 1207

 Score = 88.2 bits (217), Expect(2) = 1e-16
 Identities = 40/66 (60%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
 Frame = -1

Query: 237  MSRIPYVSAVGNLMYAMICTRAYIGFALGVMSKYLSNPGKEH*ESVKWIIKYLRGTTD-K 61
            M R+PY SAVG+LMYAM+CTR  I +A+GV+S++LSNPG+ H E+VKWI++YLRGT+  K
Sbjct: 958  MRRVPYASAVGSLMYAMVCTRPDIAYAIGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLK 1017

Query: 60   CIFAGG 43
              F  G
Sbjct: 1018 LTFGSG 1023



 Score = 22.7 bits (47), Expect(2) = 1e-16
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 46   GSSIMQSKLQKCIAL 2
            G+   QS+LQKC+AL
Sbjct: 1055 GAVSWQSRLQKCVAL 1069