BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00025565
         (620 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containi...   292   3e-77
emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]   292   3e-77
ref|XP_002511861.1| pentatricopeptide repeat-containing protein,...   270   2e-70
gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossyp...   211   1e-52
gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossyp...   208   5e-52

>ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 804

 Score =  292 bits (748), Expect = 3e-77
 Identities = 132/203 (65%), Positives = 163/203 (80%)
 Frame = +3

Query: 6   IGESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFG 185
           +GESI A   K+GY SN FL SALID+YCK G + QG A+F E PT D +CWSSMING+G
Sbjct: 330 LGESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYG 389

Query: 186 INGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWNWFYAMEEKYRISPSL 365
           +NG G+EA+  FSNML+  +KPN +VF+SVLSACSHCGLE+EGW+ F +ME+KY I P L
Sbjct: 390 LNGCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLEHEGWSCFSSMEQKYGIIPKL 449

Query: 366 AHYACMVDMLSRQGNVAAALDFVRSMPIDPDERIWGALLAGCRLAHESFDNTEFVAKQLI 545
            HYACMVD++SR+GN+  AL FV  MP++PD+RIWGALLAGCR  H S +  E VA++LI
Sbjct: 450 PHYACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLAGCRSTHGSIEIAELVAERLI 509

Query: 546 RLDPQNTSYYVMLSNLYAEEGKW 614
            LDPQNTSYYV+LSNLYAE+G+W
Sbjct: 510 GLDPQNTSYYVILSNLYAEQGRW 532



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
 Frame = +3

Query: 9   GESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFGI 188
           G + H  ++K+G  +   + +AL+ MY K G ++    VF++    D+I WS+MI+    
Sbjct: 230 GIAFHGFLLKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAH 289

Query: 189 NGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWN-WFYAMEEKYRISPSL 365
           +     A+  F  M S + +PN I F+S+L ACS  G +  G +   +A +  Y  +  L
Sbjct: 290 SRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFL 349

Query: 366 AHYACMVDMLSRQGNVAAALDFVRSMPIDPDERIWGALLAGCRL------AHESFDN 518
           +  + ++D+  + G +         +P   D   W +++ G  L      A E+F N
Sbjct: 350 S--SALIDLYCKFGRINQGRAIFNEIP-TKDLVCWSSMINGYGLNGCGDEALETFSN 403



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
 Frame = +3

Query: 18  IHAAVIKSGYTSNTFLVSALIDMYCK--IGHVKQGNAVFEENPTLDFICWSSMINGFGIN 191
           I  +VIK G+ S   + +ALI  Y    +G V +   +F + P  D + WS+M++    +
Sbjct: 32  ICGSVIKLGFESEVSVATALIGFYSDYDMGIVWK---IFNQTPIKDLVLWSAMVSACVKS 88

Query: 192 GFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWNWFYAMEEKYRISPSLAH 371
           G   EA   F  M    ++PN +  +S+L AC++ G    G    +    K    P    
Sbjct: 89  GQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFG-KEIHGFSIKKMFHPLTNV 147

Query: 372 YACMVDMLSRQGNVAAALDFVRSMPIDPDERIWGALLAGC------RLAHESFDNTEF 527
           +  +VDM ++  N  A++  V    ++ D   W  ++ GC      R A ++F   +F
Sbjct: 148 HNSLVDMYAKCRNFKASM-LVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQF 204


>emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
          Length = 826

 Score =  292 bits (748), Expect = 3e-77
 Identities = 132/203 (65%), Positives = 163/203 (80%)
 Frame = +3

Query: 6    IGESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFG 185
            +GESI A   K+GY SN FL SALID+YCK G + QG A+F E PT D +CWSSMING+G
Sbjct: 409  LGESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYG 468

Query: 186  INGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWNWFYAMEEKYRISPSL 365
            +NG G+EA+  FSNML+  +KPN +VF+SVLSACSHCGLE+EGW+ F +ME+KY I P L
Sbjct: 469  LNGCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLEHEGWSCFSSMEQKYGIIPKL 528

Query: 366  AHYACMVDMLSRQGNVAAALDFVRSMPIDPDERIWGALLAGCRLAHESFDNTEFVAKQLI 545
             HYACMVD++SR+GN+  AL FV  MP++PD+RIWGALLAGCR  H S +  E VA++LI
Sbjct: 529  PHYACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLAGCRSTHGSIEIAELVAERLI 588

Query: 546  RLDPQNTSYYVMLSNLYAEEGKW 614
             LDPQNTSYYV+LSNLYAE+G+W
Sbjct: 589  GLDPQNTSYYVILSNLYAEQGRW 611



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
 Frame = +3

Query: 9   GESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFGI 188
           G + H  ++K+G  +   + +AL+ MY K G ++    VF++    D+I WS+MI+    
Sbjct: 309 GIAFHGFLLKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAH 368

Query: 189 NGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWN-WFYAMEEKYRISPSL 365
           +     A+  F  M S + +PN I F+S+L ACS  G +  G +   +A +  Y  +  L
Sbjct: 369 SRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFL 428

Query: 366 AHYACMVDMLSRQGNVAAALDFVRSMPIDPDERIWGALLAGCRL------AHESFDN 518
           +  + ++D+  + G +         +P   D   W +++ G  L      A E+F N
Sbjct: 429 S--SALIDLYCKFGRINQGRAIFNEIP-TKDLVCWSSMINGYGLNGCGDEALETFSN 482



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
 Frame = +3

Query: 18  IHAAVIKSGYTSNTFLVSALIDMYCK--IGHVKQGNAVFEENPTLDFICWSSMINGFGIN 191
           I  +VIK G+ S   + +ALI  Y    +G V +   +F + P  D + WS+M++    +
Sbjct: 111 ICGSVIKLGFESEVSVATALIGFYSDYDMGIVWK---IFNQTPIKDLVLWSAMVSACVKS 167

Query: 192 GFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWNWFYAMEEKYRISPSLAH 371
           G   EA   F  M    ++PN +  +S+L AC++ G    G    +    K    P    
Sbjct: 168 GQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFG-KEIHGFSIKKMFHPLTNV 226

Query: 372 YACMVDMLSRQGNVAAALDFVRSMPIDPDERIWGALLAGC------RLAHESFDNTEF 527
           +  +VDM ++  N  A++  V    ++ D   W  ++ GC      R A ++F   +F
Sbjct: 227 HNSLVDMYAKCRNFKASM-LVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQF 283


>ref|XP_002511861.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549041|gb|EEF50530.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 751

 Score =  270 bits (689), Expect = 2e-70
 Identities = 125/206 (60%), Positives = 160/206 (77%), Gaps = 1/206 (0%)
 Frame = +3

Query: 6   IGESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFG 185
           +GESIH  + K+G++SN FL SALID+YCK G VK+G AVF+E  T D ICWSSMING+ 
Sbjct: 330 LGESIHGFITKAGHSSNAFLNSALIDLYCKFGSVKKGKAVFDEISTKDLICWSSMINGYA 389

Query: 186 INGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWNWFYAMEEKYRISPSL 365
           +NG G EA+  F++ML+   KPN  VFLS+LS CS CGLE+EG  WFY M+EKYR++P L
Sbjct: 390 LNGCGSEALETFADMLNWGFKPNETVFLSILSVCSQCGLEHEGRKWFYYMQEKYRLAPKL 449

Query: 366 AHYACMVDMLSRQGNVAAALDFVRSMPIDPDERIWGALLAGCRLAHE-SFDNTEFVAKQL 542
           +HYACMVD+LSR G++  AL FV+ MP+ PD+RIWGA+LAGCR   + S +  EFV +QL
Sbjct: 450 SHYACMVDLLSRHGHIEEALMFVKKMPVVPDKRIWGAVLAGCRSRGDGSIEVAEFVVRQL 509

Query: 543 IRLDPQNTSYYVMLSNLYAEEGKWKE 620
             LDP+NTSYYV L +LYAE+G+WK+
Sbjct: 510 SALDPENTSYYVTLLDLYAEQGRWKD 535



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 32/102 (31%), Positives = 51/102 (50%)
 Frame = +3

Query: 9   GESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFGI 188
           G   HA + K+G++    + +AL+ MY K         VF++    D I WS+MI+ +  
Sbjct: 230 GLGFHAYIEKNGFSGYVSVGTALLQMYGKFSKFSSAWLVFDQLNYKDLIAWSAMISVYAR 289

Query: 189 NGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEG 314
            G   +A+  +  M S   K N + F+S+L ACS  G +  G
Sbjct: 290 GGKPYDALNIYRQMQSTNEKANEVTFVSLLQACSALGAQELG 331


>gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  211 bits (536), Expect = 1e-52
 Identities = 92/204 (45%), Positives = 143/204 (70%)
 Frame = +3

Query: 9    GESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFGI 188
            G+ IH  ++++GY+S+  + +AL+D+Y K G +     +F+  P+ D + W+ MI+G+G+
Sbjct: 451  GKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGM 510

Query: 189  NGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWNWFYAMEEKYRISPSLA 368
            +G+G EAI  F+ M    I+P+ + F+S+L ACSH GL  +GW +FY M+  + I P L 
Sbjct: 511  HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 570

Query: 369  HYACMVDMLSRQGNVAAALDFVRSMPIDPDERIWGALLAGCRLAHESFDNTEFVAKQLIR 548
            HYACMVD+LSR GN++ A +F+ ++PI PD  IWGALL GCR+ H+  +  E VA+++  
Sbjct: 571  HYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHD-IELAEKVAERVFE 629

Query: 549  LDPQNTSYYVMLSNLYAEEGKWKE 620
            L+P+NT YYV+L+N+YAE  KW+E
Sbjct: 630  LEPENTGYYVLLANIYAEAEKWEE 653



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
 Frame = +3

Query: 6   IGESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFG 185
           +G+++H+  IKS +       + L+DMY K G +     VFE+    + + W+SMI G+ 
Sbjct: 269 LGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 186 INGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWNWFYAMEEKYRISPSL 365
            +G  + AIR    M    +K + +   S+L AC+  G    G +  +   +   +  +L
Sbjct: 329 RDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKD-VHDYIKANNMESNL 387

Query: 366 AHYACMVDMLSRQGNVAAALDFVRSM-------------PIDPDERIWGALLAGC 491
                ++DM ++ G++  A     +M              + PD R    +L  C
Sbjct: 388 FVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPAC 442


>gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  208 bits (530), Expect = 5e-52
 Identities = 92/204 (45%), Positives = 141/204 (69%)
 Frame = +3

Query: 9   GESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFGI 188
           G+ IH  ++++GY+S+  + +AL+D+Y K G +     +F+  P+ D + W+ MI G+G+
Sbjct: 313 GKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGM 372

Query: 189 NGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWNWFYAMEEKYRISPSLA 368
           +G+G EAI  F+ M    I+P+ + F+S+L ACSH GL  +GW +FY M+  + I P L 
Sbjct: 373 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 432

Query: 369 HYACMVDMLSRQGNVAAALDFVRSMPIDPDERIWGALLAGCRLAHESFDNTEFVAKQLIR 548
           HYACMVD+LSR GN++ A  F+ ++PI PD  IWGALL GCR+ H+  +  E VA+++  
Sbjct: 433 HYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHD-IELAEKVAERVFE 491

Query: 549 LDPQNTSYYVMLSNLYAEEGKWKE 620
           L+P+NT YYV+L+N+YAE  KW+E
Sbjct: 492 LEPENTGYYVLLANIYAEAEKWEE 515



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
 Frame = +3

Query: 6   IGESIHAAVIKSGYTSNTFLVSALIDMYCKIGHVKQGNAVFEENPTLDFICWSSMINGFG 185
           +G+++H+  IKS +       + L+DMY K G +     VFE+    + + W+SMI G+ 
Sbjct: 131 LGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 190

Query: 186 INGFGEEAIRCFSNMLSLEIKPNGIVFLSVLSACSHCGLEYEGWNWFYAMEEKYRISPSL 365
            +G+ + AI     M    +K + +   S+L AC+  G    G +  +   +   ++ +L
Sbjct: 191 RDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD-VHDYIKANNMASNL 249

Query: 366 AHYACMVDMLSRQGNVAAALDFVRSM-------------PIDPDERIWGALLAGC 491
                ++DM ++ G++  A     +M              + PD R    +L  C
Sbjct: 250 FVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPAC 304