BLASTX nr result
ID: Jatropha_contig00002042
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00002042
(569 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN7... 362 4e-98
gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloropla... 356 2e-96
ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia util... 353 2e-95
gb|AEX58446.1| RNA polymerase beta' subunit (chloroplast) [Theob... 352 3e-95
gb|AGW04734.1| RNA polymerase beta chain [Orthosia scoparia] 351 6e-95
gb|AGW04657.1| RNA polymerase beta chain [Matelea biflora] 351 6e-95
gb|ADZ74725.1| RNA polymerase beta subunit [Gossypium sturtianum] 351 6e-95
gb|ADZ74638.1| RNA polymerase beta subunit [Gossypium stocksii] 351 6e-95
gb|ADZ74467.1| RNA polymerase beta subunit [Gossypium herbaceum] 351 6e-95
gb|ADZ74380.1| RNA polymerase beta subunit [Gossypium bickii] 351 6e-95
gb|ADZ74293.1| RNA polymerase beta subunit [Gossypium anomalum] 351 6e-95
ref|YP_006503599.1| RNA polymerase beta'' subunit (chloroplast) ... 351 6e-95
ref|YP_006503433.1| RNA polymerase beta'' subunit (chloroplast) ... 351 6e-95
ref|YP_006503350.1| RNA polymerase beta'' subunit (chloroplast) ... 351 6e-95
ref|YP_006503267.1| RNA polymerase beta'' subunit (chloroplast) ... 351 6e-95
ref|YP_006303481.1| RNA polymerase beta'' subunit (chloroplast) ... 351 6e-95
ref|YP_005087683.1| RNA polymerase beta'' subunit (chloroplast) ... 351 6e-95
gb|ABV65761.1| RNA polymerase beta'' subunit, partial (chloropla... 351 6e-95
gb|ABD93849.1| RNA polymerase beta chain [Chloranthus multistachys] 351 6e-95
gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata] 351 8e-95
>ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN72682.1| rpoC2 [Jatropha
curcas]
Length = 1394
Score = 362 bits (928), Expect = 4e-98
Identities = 188/189 (99%), Positives = 188/189 (99%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE
Sbjct: 1128 VHGHYGEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 1187
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1188 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1247
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA
Sbjct: 1248 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 1307
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1308 RVLAKAALR 1316
>gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloroplast) [Eucryphia
lucida]
Length = 1280
Score = 356 bits (914), Expect = 2e-96
Identities = 184/189 (97%), Positives = 187/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKRVEGWNE
Sbjct: 1086 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNE 1145
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1146 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1205
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA
Sbjct: 1206 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 1265
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1266 RVLAKAALR 1274
>ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia utilis]
gi|501418813|gb|AGL94690.1| RNA polymerase beta' subunit
[Prinsepia utilis]
Length = 1384
Score = 353 bits (905), Expect = 2e-95
Identities = 179/189 (94%), Positives = 187/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRS+DSIS++LEKRVEGWNE
Sbjct: 1111 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRVEGWNE 1170
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1171 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1230
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVFSPGEL+GLLRAERTGRALEE+ICYRA+LLGIT+ASLNTQSFISEASFQETA
Sbjct: 1231 SEDGMSNVFSPGELVGLLRAERTGRALEESICYRAVLLGITKASLNTQSFISEASFQETA 1290
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1291 RVLAKAALR 1299
>gb|AEX58446.1| RNA polymerase beta' subunit (chloroplast) [Theobroma grandiflorum]
Length = 1391
Score = 352 bits (904), Expect = 3e-95
Identities = 181/189 (95%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKRVEGWNE
Sbjct: 1116 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNE 1175
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1176 CITRILGIPWGFVIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1235
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1236 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1295
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1296 RVLAKAALR 1304
>gb|AGW04734.1| RNA polymerase beta chain [Orthosia scoparia]
Length = 1379
Score = 351 bits (901), Expect = 6e-95
Identities = 181/189 (95%), Positives = 185/189 (97%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEIFYEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1114 VHGHYGEIFYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1173
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF I AELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1174 CITRILGIPWGFFISAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1233
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SED MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA
Sbjct: 1234 SEDRMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 1293
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1294 RVLAKAALR 1302
>gb|AGW04657.1| RNA polymerase beta chain [Matelea biflora]
Length = 1377
Score = 351 bits (901), Expect = 6e-95
Identities = 181/189 (95%), Positives = 185/189 (97%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEIFYEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1113 VHGHYGEIFYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1172
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF I AELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1173 CITRILGIPWGFFISAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1232
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SED MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA
Sbjct: 1233 SEDRMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 1292
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1293 RVLAKAALR 1301
>gb|ADZ74725.1| RNA polymerase beta subunit [Gossypium sturtianum]
Length = 1393
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1118 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1177
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1178 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1237
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1238 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1297
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1298 RVLAKAALR 1306
>gb|ADZ74638.1| RNA polymerase beta subunit [Gossypium stocksii]
Length = 1391
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1116 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1175
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1176 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1235
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1236 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1295
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1296 RVLAKAALR 1304
>gb|ADZ74467.1| RNA polymerase beta subunit [Gossypium herbaceum]
Length = 1393
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1118 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1177
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1178 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1237
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1238 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1297
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1298 RVLAKAALR 1306
>gb|ADZ74380.1| RNA polymerase beta subunit [Gossypium bickii]
Length = 1393
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1118 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1177
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1178 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1237
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1238 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1297
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1298 RVLAKAALR 1306
>gb|ADZ74293.1| RNA polymerase beta subunit [Gossypium anomalum]
Length = 1393
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1118 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1177
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1178 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1237
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1238 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1297
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1298 RVLAKAALR 1306
>ref|YP_006503599.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium robinsonii]
gi|335354657|gb|AEH43273.1| RNA polymerase beta'' subunit
[Gossypium robinsonii]
Length = 1395
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1120 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1179
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1180 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1239
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1240 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1299
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1300 RVLAKAALR 1308
>ref|YP_006503433.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium
capitis-viridis] gi|335354489|gb|AEH43107.1| RNA
polymerase beta'' subunit (chloroplast) [Gossypium
capitis-viridis]
Length = 1393
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1118 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1177
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1178 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1237
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1238 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1297
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1298 RVLAKAALR 1306
>ref|YP_006503350.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium somalense]
gi|394830878|ref|YP_006503516.1| RNA polymerase beta''
subunit (chloroplast) [Gossypium areysianum]
gi|335354405|gb|AEH43024.1| RNA polymerase beta'' subunit
[Gossypium somalense] gi|335354573|gb|AEH43190.1| RNA
polymerase beta'' subunit (chloroplast) [Gossypium
areysianum]
Length = 1393
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1118 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1177
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1178 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1237
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1238 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1297
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1298 RVLAKAALR 1306
>ref|YP_006503267.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium incanum]
gi|335354321|gb|AEH42941.1| RNA polymerase beta'' subunit
[Gossypium incanum]
Length = 1391
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1116 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1175
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1176 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1235
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1236 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1295
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1296 RVLAKAALR 1304
>ref|YP_006303481.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium gossypioides]
gi|329317061|gb|AEB90420.1| RNA polymerase beta'' subunit
(chloroplast) [Gossypium gossypioides]
Length = 1394
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1119 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1178
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1179 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1238
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1239 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1298
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1299 RVLAKAALR 1307
>ref|YP_005087683.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium raimondii]
gi|318084640|gb|ADV39112.1| RNA polymerase beta'' subunit
(chloroplast) [Gossypium raimondii]
Length = 1393
Score = 351 bits (901), Expect = 6e-95
Identities = 179/189 (94%), Positives = 186/189 (98%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE
Sbjct: 1118 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNE 1177
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1178 CITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1237
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 1238 SEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 1297
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 1298 RVLAKAALR 1306
>gb|ABV65761.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ochna
mossambicensis]
Length = 1268
Score = 351 bits (901), Expect = 6e-95
Identities = 181/189 (95%), Positives = 185/189 (97%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSISI+LEKRVEGWNE
Sbjct: 1076 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRVEGWNE 1135
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CI RILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 1136 CIPRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 1195
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVFSPGELIGLLRAERTGRALEEAICYR ILLGIT+ASLNTQSFISEASFQETA
Sbjct: 1196 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRVILLGITKASLNTQSFISEASFQETA 1255
Query: 28 RVLAKAALR 2
RVL+KAALR
Sbjct: 1256 RVLSKAALR 1264
>gb|ABD93849.1| RNA polymerase beta chain [Chloranthus multistachys]
Length = 827
Score = 351 bits (901), Expect = 6e-95
Identities = 183/189 (96%), Positives = 185/189 (97%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSISI+LEKRVEGWNE
Sbjct: 636 VHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRVEGWNE 695
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
ITRILGIPWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV
Sbjct: 696 RITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 755
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA
Sbjct: 756 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 815
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 816 RVLAKAALR 824
>gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata]
Length = 861
Score = 351 bits (900), Expect = 8e-95
Identities = 180/189 (95%), Positives = 185/189 (97%)
Frame = -2
Query: 568 VHGH*GEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNE 389
VHGH GEI YEGDTLVTF+YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKRVEGWNE
Sbjct: 663 VHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRVEGWNE 722
Query: 388 CITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLV 209
CITRILGIPWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSK+LV
Sbjct: 723 CITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKMLV 782
Query: 208 SEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETA 29
S DGMSNVFSPGELIGLLRAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETA
Sbjct: 783 SGDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETA 842
Query: 28 RVLAKAALR 2
RVLAKAALR
Sbjct: 843 RVLAKAALR 851