BLASTX nr result
ID: Jatropha_contig00001256
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00001256
(468 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002313254.1| predicted protein [Populus trichocarpa] gi|1... 64 6e-18
gb|EOX96660.1| DNA-directed RNA polymerase II subunit RPB11 [The... 66 3e-17
emb|CAN70445.1| hypothetical protein VITISV_015574 [Vitis vinifera] 66 4e-17
ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II su... 66 5e-17
ref|XP_002517812.1| DNA-directed RNA polymerase II 13.6 kD polyp... 65 2e-16
gb|EMJ02624.1| hypothetical protein PRUPE_ppa013559mg [Prunus pe... 66 2e-16
ref|XP_004289694.1| PREDICTED: DNA-directed RNA polymerase II su... 66 3e-16
ref|XP_004289695.1| PREDICTED: DNA-directed RNA polymerase II su... 66 4e-16
gb|ESR52329.1| hypothetical protein CICLE_v10033103mg [Citrus cl... 66 5e-16
gb|AFK46555.1| unknown [Lotus japonicus] 62 1e-15
ref|NP_190777.1| non-catalytic subunit of DNA-dependent RNA poly... 63 3e-15
ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]... 63 3e-15
ref|XP_004251169.1| PREDICTED: DNA-directed RNA polymerase II su... 62 4e-15
gb|ESQ45299.1| hypothetical protein EUTSA_v10010833mg [Eutrema s... 63 9e-15
ref|XP_004955770.1| PREDICTED: DNA-directed RNA polymerase II su... 66 1e-14
ref|XP_004489205.1| PREDICTED: DNA-directed RNA polymerase II su... 62 1e-14
gb|AFW72356.1| hypothetical protein ZEAMMB73_054239 [Zea mays] 66 1e-14
gb|AFW72341.1| hypothetical protein ZEAMMB73_270623 [Zea mays] 66 1e-14
ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea ma... 66 1e-14
ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [S... 65 3e-14
>ref|XP_002313254.1| predicted protein [Populus trichocarpa] gi|118484276|gb|ABK94017.1|
unknown [Populus trichocarpa]
gi|222849662|gb|EEE87209.1| DNA-directed RNA polymerase
II 13.6 kDa polypeptide family protein [Populus
trichocarpa] gi|550331237|gb|ERP56915.1| hypothetical
protein POPTR_0009s07520g [Populus trichocarpa]
Length = 116
Score = 63.5 bits (153), Expect(2) = 6e-18
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RD+NVLFAGYKLP+PL+YKI+VRIHTTSQSSP
Sbjct: 52 RDDNVLFAGYKLPHPLKYKIIVRIHTTSQSSP 83
Score = 52.8 bits (125), Expect(2) = 6e-18
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLSNPEG 278
Q YNQAINDLDKELDHLKNAFE +L+N G
Sbjct: 85 QAYNQAINDLDKELDHLKNAFEAELANRPG 114
>gb|EOX96660.1| DNA-directed RNA polymerase II subunit RPB11 [Theobroma cacao]
Length = 169
Score = 66.2 bits (160), Expect(2) = 3e-17
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGYKLP+PLQYKI+VRIHTTSQSSP
Sbjct: 52 RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSP 83
Score = 47.4 bits (111), Expect(2) = 3e-17
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFE 302
Q YNQAINDLDKELDHLKNAFE
Sbjct: 85 QAYNQAINDLDKELDHLKNAFE 106
>emb|CAN70445.1| hypothetical protein VITISV_015574 [Vitis vinifera]
Length = 129
Score = 65.9 bits (159), Expect(2) = 4e-17
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGYKLP+PLQYKI++RIHTTSQSSP
Sbjct: 65 RDENVLFAGYKLPHPLQYKIIIRIHTTSQSSP 96
Score = 47.4 bits (111), Expect(2) = 4e-17
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLS 290
Q YNQAINDLDKELD+LKNAFE +L+
Sbjct: 98 QAYNQAINDLDKELDYLKNAFEVELA 123
>ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
vinifera] gi|296082163|emb|CBI21168.3| unnamed protein
product [Vitis vinifera]
Length = 116
Score = 65.9 bits (159), Expect(2) = 5e-17
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGYKLP+PLQYKI++RIHTTSQSSP
Sbjct: 52 RDENVLFAGYKLPHPLQYKIIIRIHTTSQSSP 83
Score = 47.4 bits (111), Expect(2) = 5e-17
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLS 290
Q YNQAINDLDKELD+LKNAFE +L+
Sbjct: 85 QAYNQAINDLDKELDYLKNAFEVELA 110
>ref|XP_002517812.1| DNA-directed RNA polymerase II 13.6 kD polypeptide, putative
[Ricinus communis] gi|223543084|gb|EEF44619.1|
DNA-directed RNA polymerase II 13.6 kD polypeptide,
putative [Ricinus communis]
Length = 156
Score = 65.1 bits (157), Expect(2) = 2e-16
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGY+LP+PLQYKI+VRIHTTSQSSP
Sbjct: 52 RDENVLFAGYRLPHPLQYKIIVRIHTTSQSSP 83
Score = 45.8 bits (107), Expect(2) = 2e-16
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLSNPEG 278
Q YNQAINDLDKELDHLK+AFE + P+G
Sbjct: 85 QAYNQAINDLDKELDHLKSAFE-ECLRPKG 113
>gb|EMJ02624.1| hypothetical protein PRUPE_ppa013559mg [Prunus persica]
Length = 116
Score = 66.2 bits (160), Expect(2) = 2e-16
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGYKLP+PLQYKI+VRIHTTSQSSP
Sbjct: 52 RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSP 83
Score = 44.7 bits (104), Expect(2) = 2e-16
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLS 290
Q YNQAINDLDKELDHLK+ FE +++
Sbjct: 85 QAYNQAINDLDKELDHLKSCFEAEVA 110
>ref|XP_004289694.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Fragaria vesca subsp. vesca]
Length = 134
Score = 66.2 bits (160), Expect(2) = 3e-16
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGYKLP+PLQYKI+VRIHTTSQSSP
Sbjct: 52 RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSP 83
Score = 44.3 bits (103), Expect(2) = 3e-16
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQL 293
Q YNQAINDLDKELDHLK+ FE L
Sbjct: 85 QAYNQAINDLDKELDHLKSNFEVML 109
>ref|XP_004289695.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Fragaria vesca subsp. vesca]
Length = 118
Score = 66.2 bits (160), Expect(2) = 4e-16
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGYKLP+PLQYKI+VRIHTTSQSSP
Sbjct: 52 RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSP 83
Score = 43.9 bits (102), Expect(2) = 4e-16
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLS 290
Q YNQAINDLDKELDHLK+ FE +++
Sbjct: 85 QAYNQAINDLDKELDHLKSNFEAEVA 110
>gb|ESR52329.1| hypothetical protein CICLE_v10033103mg [Citrus clementina]
Length = 116
Score = 66.2 bits (160), Expect(2) = 5e-16
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGYKLP+PLQYKI+VRIHTTSQSSP
Sbjct: 52 RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSP 83
Score = 43.5 bits (101), Expect(2) = 5e-16
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLS 290
Q YNQAINDLDKELD LK+AFE +L+
Sbjct: 85 QAYNQAINDLDKELDTLKSAFEAELA 110
>gb|AFK46555.1| unknown [Lotus japonicus]
Length = 116
Score = 62.0 bits (149), Expect(2) = 1e-15
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RD NVLFAGYKLP+PLQYKI+VRIHT SQSSP
Sbjct: 52 RDPNVLFAGYKLPHPLQYKIIVRIHTASQSSP 83
Score = 46.2 bits (108), Expect(2) = 1e-15
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFE 302
Q YNQ+INDLDKELDHLKNAFE
Sbjct: 85 QAYNQSINDLDKELDHLKNAFE 106
>ref|NP_190777.1| non-catalytic subunit of DNA-dependent RNA polymerases II, IV and V
[Arabidopsis thaliana]
gi|3219858|sp|Q38859.1|NRPBB_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
11; AltName: Full=DNA-directed RNA polymerase II 13.6
kDa polypeptide; AltName: Full=DNA-directed RNA
polymerase II subunit J; AltName: Full=DNA-directed RNA
polymerase II subunit RPB11; Short=RNA polymerase II
subunit B11 gi|881501|gb|AAB02849.1| RNA polymerase II
13.6 kDa subunit [Arabidopsis thaliana]
gi|4678938|emb|CAB41329.1| DNA-directed RNA polymerase
II 13.6K chain [Arabidopsis thaliana]
gi|29029080|gb|AAO64919.1| At3g52090 [Arabidopsis
thaliana] gi|332645368|gb|AEE78889.1| non-catalytic
subunit of DNA-dependent RNA polymerases II, IV and V
[Arabidopsis thaliana]
Length = 116
Score = 63.2 bits (152), Expect(2) = 3e-15
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGY+LP+PL+YKI+VRIHTTSQSSP
Sbjct: 52 RDENVLFAGYQLPHPLKYKIIVRIHTTSQSSP 83
Score = 43.9 bits (102), Expect(2) = 3e-15
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLS 290
Q YNQAINDLDKELD+LKN FE +++
Sbjct: 85 QAYNQAINDLDKELDYLKNQFEAEVA 110
>ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
gi|297323680|gb|EFH54101.1| ATRPB13.6 [Arabidopsis
lyrata subsp. lyrata]
Length = 116
Score = 63.2 bits (152), Expect(2) = 3e-15
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGY+LP+PL+YKI+VRIHTTSQSSP
Sbjct: 52 RDENVLFAGYQLPHPLKYKIIVRIHTTSQSSP 83
Score = 43.9 bits (102), Expect(2) = 3e-15
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLS 290
Q YNQAINDLDKELD+LKN FE +++
Sbjct: 85 QAYNQAINDLDKELDYLKNQFEAEVA 110
>ref|XP_004251169.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Solanum lycopersicum] gi|565346226|ref|XP_006340167.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 11-like [Solanum tuberosum]
Length = 116
Score = 61.6 bits (148), Expect(2) = 4e-15
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RD+NVLFAGYKLP+PLQYKIL+RI TTSQSSP
Sbjct: 52 RDDNVLFAGYKLPHPLQYKILLRIQTTSQSSP 83
Score = 45.1 bits (105), Expect(2) = 4e-15
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLS 290
Q YNQAINDLDKELDHLK+ FE +L+
Sbjct: 85 QAYNQAINDLDKELDHLKSQFEGELA 110
>gb|ESQ45299.1| hypothetical protein EUTSA_v10010833mg [Eutrema salsugineum]
Length = 116
Score = 63.2 bits (152), Expect(2) = 9e-15
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RDENVLFAGY+LP+PL+YKI+VRIHTTSQSSP
Sbjct: 52 RDENVLFAGYQLPHPLKYKIIVRIHTTSQSSP 83
Score = 42.4 bits (98), Expect(2) = 9e-15
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLS 290
Q YNQAINDLDKEL++LKN FE +++
Sbjct: 85 QAYNQAINDLDKELEYLKNQFEAEVA 110
>ref|XP_004955770.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Setaria italica] gi|514825448|ref|XP_004987377.1|
PREDICTED: DNA-directed RNA polymerase II subunit
RPB11-like [Setaria italica]
Length = 120
Score = 65.9 bits (159), Expect(2) = 1e-14
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSPSKYITK 352
RD NVLFAGYKLP+PLQYKI+VRIHTTSQSSP++ T+
Sbjct: 52 RDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYTQ 89
Score = 39.3 bits (90), Expect(2) = 1e-14
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQLSNPE 281
Q Y QA+NDLDKEL++LK AFE + + E
Sbjct: 85 QAYTQAVNDLDKELEYLKQAFEVEKNRYE 113
>ref|XP_004489205.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Cicer
arietinum] gi|502152948|ref|XP_004509165.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB11-like
isoform X1 [Cicer arietinum]
gi|502152950|ref|XP_004509166.1| PREDICTED: DNA-directed
RNA polymerase II subunit RPB11-like isoform X2 [Cicer
arietinum]
Length = 116
Score = 62.0 bits (149), Expect(2) = 1e-14
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSP 370
RD NVLFAGYKLP+PLQYKI+VRIHT SQSSP
Sbjct: 52 RDPNVLFAGYKLPHPLQYKIIVRIHTASQSSP 83
Score = 43.1 bits (100), Expect(2) = 1e-14
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFEYQL 293
Q YNQ+INDLDKELD LKN FE +L
Sbjct: 85 QAYNQSINDLDKELDQLKNGFEAEL 109
>gb|AFW72356.1| hypothetical protein ZEAMMB73_054239 [Zea mays]
Length = 68
Score = 65.9 bits (159), Expect(2) = 1e-14
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSPSKYITK 352
RD NVLFAGYKLP+PLQYKI+VRIHTTSQSSP++ T+
Sbjct: 5 RDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYTQ 42
Score = 38.9 bits (89), Expect(2) = 1e-14
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFE 302
Q Y QAINDLDKEL++LK AFE
Sbjct: 38 QAYTQAINDLDKELEYLKQAFE 59
>gb|AFW72341.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 112
Score = 65.9 bits (159), Expect(2) = 1e-14
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSPSKYITK 352
RD NVLFAGYKLP+PLQYKI+VRIHTTSQSSP++ T+
Sbjct: 52 RDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYTQ 89
Score = 38.9 bits (89), Expect(2) = 1e-14
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFE 302
Q Y QAINDLDKEL++LK AFE
Sbjct: 85 QAYTQAINDLDKELEYLKQAFE 106
>ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea mays]
gi|194696560|gb|ACF82364.1| unknown [Zea mays]
gi|194699868|gb|ACF84018.1| unknown [Zea mays]
gi|194706942|gb|ACF87555.1| unknown [Zea mays]
gi|195615212|gb|ACG29436.1| DNA-directed RNA polymerase
II subunit J [Zea mays] gi|195628620|gb|ACG36140.1|
DNA-directed RNA polymerase II subunit J [Zea mays]
gi|195656859|gb|ACG47897.1| DNA-directed RNA polymerase
II subunit J [Zea mays] gi|413937791|gb|AFW72342.1|
DNA-directed RNA polymerase II subunit J isoform 1 [Zea
mays] gi|413937792|gb|AFW72343.1| DNA-directed RNA
polymerase II subunit J isoform 2 [Zea mays]
gi|413937793|gb|AFW72344.1| DNA-directed RNA polymerase
II subunit J isoform 3 [Zea mays]
gi|413937794|gb|AFW72345.1| DNA-directed RNA polymerase
II subunit J isoform 4 [Zea mays]
gi|413937795|gb|AFW72346.1| DNA-directed RNA polymerase
II subunit J isoform 5 [Zea mays]
Length = 120
Score = 65.9 bits (159), Expect(2) = 1e-14
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSPSKYITK 352
RD NVLFAGYKLP+PLQYKI+VRIHTTSQSSP++ T+
Sbjct: 52 RDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYTQ 89
Score = 38.9 bits (89), Expect(2) = 1e-14
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFE 302
Q Y QAINDLDKEL++LK AFE
Sbjct: 85 QAYTQAINDLDKELEYLKQAFE 106
>ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
gi|241938640|gb|EES11785.1| hypothetical protein
SORBIDRAFT_06g001360 [Sorghum bicolor]
Length = 117
Score = 64.7 bits (156), Expect(2) = 3e-14
Identities = 29/34 (85%), Positives = 33/34 (97%)
Frame = -1
Query: 465 RDENVLFAGYKLPYPLQYKILVRIHTTSQSSPSK 364
RD NVLFAGYKLP+PLQYKI+VRIHTTSQSSP++
Sbjct: 52 RDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQ 85
Score = 38.9 bits (89), Expect(2) = 3e-14
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = -3
Query: 367 QVYNQAINDLDKELDHLKNAFE 302
Q Y+QA+NDLDKEL++LK AFE
Sbjct: 85 QAYSQAVNDLDKELEYLKQAFE 106