BLASTX nr result

ID: Glycyrrhiza34_contig00022049 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza34_contig00022049
         (324 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_003629914.2 pentatricopeptide (PPR) repeat protein [Medicago ...    56   8e-07
XP_004504222.1 PREDICTED: pentatricopeptide repeat-containing pr...    56   8e-07

>XP_003629914.2 pentatricopeptide (PPR) repeat protein [Medicago truncatula]
           AET04390.2 pentatricopeptide (PPR) repeat protein
           [Medicago truncatula]
          Length = 700

 Score = 55.8 bits (133), Expect = 8e-07
 Identities = 33/62 (53%), Positives = 38/62 (61%)
 Frame = +3

Query: 138 CTTTPFSTAEGVTTRIRNPKSSPFKTKPHNNSPSLLSQFHHHLKNQRVDEARAVLNQIPS 317
           C TTPF      TT I+NPKSS         S SL   F +HLKNQ++D ARAV N+IPS
Sbjct: 14  CRTTPF------TTLIQNPKSS---------STSLNFTFLNHLKNQKLDSARAVFNKIPS 58

Query: 318 PH 323
           PH
Sbjct: 59  PH 60


>XP_004504222.1 PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Cicer arietinum]
          Length = 708

 Score = 55.8 bits (133), Expect = 8e-07
 Identities = 39/84 (46%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
 Frame = +3

Query: 96  MPKTRPV-IP-------TISECCTTTPFSTAEGVTTRIRNPKSSPFKTKPHNNSPSLLSQ 251
           MPK  P  +P       T S+C TT+        TT I+NPK S         S SL S 
Sbjct: 1   MPKNPPFKVPPFFTTKKTNSKCLTTS-------FTTLIQNPKPS---------STSLNST 44

Query: 252 FHHHLKNQRVDEARAVLNQIPSPH 323
           F +HLKNQR+D ARAV N+IPSPH
Sbjct: 45  FSNHLKNQRLDSARAVFNKIPSPH 68


Top