BLASTX nr result

ID: Glycyrrhiza34_contig00020402 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza34_contig00020402
         (269 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GAU11164.1 hypothetical protein TSUD_197880 [Trifolium subterran...    65   2e-10
XP_003609674.2 50S ribosome-binding GTPase [Medicago truncatula]...    54   1e-06

>GAU11164.1 hypothetical protein TSUD_197880 [Trifolium subterraneum]
          Length = 901

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 36/61 (59%), Positives = 39/61 (63%)
 Frame = -2

Query: 229 MASNSKAFVSVPATVTTGEFPQVVPLSGSVPIRAPXXXXXXXXXXXXXXDATLSDTASHS 50
           MASNSKAFV     VTTGEFPQ + LSGS+PIRAP              D TLS+TASHS
Sbjct: 1   MASNSKAFVFASPIVTTGEFPQQINLSGSIPIRAPLTVDDSDSDFDLSTDTTLSETASHS 60

Query: 49  D 47
           D
Sbjct: 61  D 61


>XP_003609674.2 50S ribosome-binding GTPase [Medicago truncatula] AES91871.2 50S
           ribosome-binding GTPase [Medicago truncatula]
          Length = 888

 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 34/61 (55%), Positives = 37/61 (60%)
 Frame = -2

Query: 229 MASNSKAFVSVPATVTTGEFPQVVPLSGSVPIRAPXXXXXXXXXXXXXXDATLSDTASHS 50
           MASNSK FVS      +GEFP  + LSGSVPIRAP              DATLS+TASHS
Sbjct: 1   MASNSKPFVSA-----SGEFPLQMNLSGSVPIRAPLTIDNSDSEFDLSSDATLSETASHS 55

Query: 49  D 47
           D
Sbjct: 56  D 56


Top