BLASTX nr result

ID: Glycyrrhiza24_contig00031837 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00031837
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW86835.1| hypothetical protein ZEAMMB73_214691 [Zea mays]         86   4e-15
ref|XP_003588352.1| NADH dehydrogenase subunit [Medicago truncat...    82   5e-14
ref|YP_588284.1| hypothetical protein ZeamMp020 [Zea mays subsp....    63   2e-08

>gb|AFW86835.1| hypothetical protein ZEAMMB73_214691 [Zea mays]
          Length = 77

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 53/84 (63%), Positives = 57/84 (67%)
 Frame = -1

Query: 287 MEKVDKTDSHFPVEKMGSFFVLHFSSNKYGKRIILKTFLTHQPFPS*SRVL*SEPARSES 108
           M+KV KTDSHF +EKMGSFFV    S K  KRIILKT L   PF     V       +  
Sbjct: 1   MDKVGKTDSHFSIEKMGSFFV----STK--KRIILKTLLN--PFVGPCIVSDPNLPGASP 52

Query: 107 PIEASEVGEPYDGQLSPAVRRGLS 36
           P+EASEVGEPYDGQLSPAVRRGLS
Sbjct: 53  PLEASEVGEPYDGQLSPAVRRGLS 76


>ref|XP_003588352.1| NADH dehydrogenase subunit [Medicago truncatula]
            gi|355477400|gb|AES58603.1| NADH dehydrogenase subunit
            [Medicago truncatula]
          Length = 1094

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 48/86 (55%), Positives = 49/86 (56%)
 Frame = -3

Query: 258  FPSRKDGFLFRLAFLIEQIRKKNHIENVPNPPTLSFVEPCIVIRTCPERVSHRGK*SW*A 79
            FP  K G  F L F     RK N+IENVPNPPTLSFVEPCIVIRTCPE            
Sbjct: 972  FPVEKMGSFFVLHF---SSRKNNNIENVPNPPTLSFVEPCIVIRTCPE------------ 1016

Query: 78   V*WATISCGSERTQLLVSTPFRGGPF 1
                        TQLLVSTPFRGGPF
Sbjct: 1017 ------------TQLLVSTPFRGGPF 1030



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/29 (96%), Positives = 28/29 (96%)
 Frame = -1

Query: 290  GMEKVDKTDSHFPVEKMGSFFVLHFSSNK 204
            GMEKVDKTDSHFPVEKMGSFFVLHFSS K
Sbjct: 961  GMEKVDKTDSHFPVEKMGSFFVLHFSSRK 989


>ref|YP_588284.1| hypothetical protein ZeamMp020 [Zea mays subsp. mays]
           gi|94502700|ref|YP_588308.1| hypothetical protein
           ZeamMp046 [Zea mays subsp. mays]
           gi|40795138|gb|AAR91182.1| hypothetical protein
           (mitochondrion) [Zea mays] gi|40795139|gb|AAR91183.1|
           hypothetical protein (mitochondrion) [Zea mays]
          Length = 99

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 34/66 (51%), Positives = 39/66 (59%)
 Frame = -2

Query: 301 FYREGWRKWTKQTRISQSKRWVPFSSCISHRTNTEKESY*KRS*PTNPFLRRAVYCNPNL 122
           FYR GW KW KQT I QSKRWVPFSS    R N  + +        NPF+   +  +PNL
Sbjct: 19  FYRGGWIKWAKQTHIFQSKRWVPFSS--RQRKNHLENA-------PNPFVGPCIVSDPNL 69

Query: 121 PGASLP 104
           PGAS P
Sbjct: 70  PGASPP 75



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/52 (57%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
 Frame = -1

Query: 182 KTFLTHQPFPS*SRVL*SEP--ARSESPIEASEVGEPYDGQLSPAVRRGLSC 33
           K  L + P P     + S+P    +  P+EASEVGEPYDGQLSPAVRRGLSC
Sbjct: 48  KNHLENAPNPFVGPCIVSDPNLPGASPPLEASEVGEPYDGQLSPAVRRGLSC 99


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