BLASTX nr result
ID: Gardenia21_contig00050820
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Gardenia21_contig00050820
(236 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACH78595.1| RNA polymerase subunit, partial (chloroplast) [Pl... 64 3e-08
gb|ACH78594.1| RNA polymerase subunit, partial (chloroplast) [Pl... 64 3e-08
gb|ABY57229.1| RpoB [Tortella humilis] 64 6e-08
gb|ABY57227.1| RpoB [Tortella tortuosa] 64 6e-08
gb|ABY57226.1| RpoB [Tortella inflexa] gi|164452785|gb|ABY57228.... 64 6e-08
gb|ABY57224.1| RpoB [Tortella densa] 64 6e-08
gb|ABY57223.1| RpoB [Tortella bambergeri] 64 6e-08
gb|ABY57222.1| RpoB [Tortella bambergeri] 64 6e-08
gb|ABY57221.1| RpoB [Tortella arctica] 64 6e-08
gb|ABY57220.1| RpoB [Tortella arctica] 64 6e-08
gb|ABY57219.1| RpoB [Pleurochaete squarrosa] 64 6e-08
gb|ABY57218.1| RpoB [Pleurochaete luteola] 64 6e-08
gb|ACH78592.1| RNA polymerase subunit, partial (chloroplast) [Di... 63 1e-07
gb|ACH78591.1| RNA polymerase subunit, partial (chloroplast) [Di... 63 1e-07
gb|ACH78590.1| RNA polymerase subunit, partial (chloroplast) [Di... 63 1e-07
gb|ACH78589.1| RNA polymerase subunit, partial (chloroplast) [Di... 63 1e-07
gb|ABY57225.1| RpoB [Tortella fragilis] 63 1e-07
dbj|BAR73113.1| RNA polymerase beta subunit, partial (chloroplas... 62 1e-07
dbj|BAJ07389.1| RNA polymerase beta subunit, partial (chloroplas... 62 1e-07
gb|AGT48612.1| RNA polymerase beta subunit, partial (chloroplast... 62 2e-07
>gb|ACH78595.1| RNA polymerase subunit, partial (chloroplast) [Plagiomnium
cuspidatum] gi|197941982|gb|ACH78596.1| RNA polymerase
subunit, partial (chloroplast) [Plagiomnium drummondii]
Length = 187
Score = 64.3 bits (155), Expect = 3e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
QTFL G A T+ G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 78 QTFLKKGQLLADGAATLKGELALGKNILVAYMPWEGYNFEDAILISE 124
>gb|ACH78594.1| RNA polymerase subunit, partial (chloroplast) [Plagiomnium
cuspidatum]
Length = 187
Score = 64.3 bits (155), Expect = 3e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
QTFL G A T+ G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 78 QTFLKKGQLLADGAATLKGELALGKNILVAYMPWEGYNFEDAILISE 124
>gb|ABY57229.1| RpoB [Tortella humilis]
Length = 194
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 83 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 129
>gb|ABY57227.1| RpoB [Tortella tortuosa]
Length = 194
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 83 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 129
>gb|ABY57226.1| RpoB [Tortella inflexa] gi|164452785|gb|ABY57228.1| RpoB [Tortella
tortuosa var. fleischeri]
Length = 194
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 83 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 129
>gb|ABY57224.1| RpoB [Tortella densa]
Length = 281
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 70 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 116
>gb|ABY57223.1| RpoB [Tortella bambergeri]
Length = 240
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 59 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 105
>gb|ABY57222.1| RpoB [Tortella bambergeri]
Length = 270
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 70 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 116
>gb|ABY57221.1| RpoB [Tortella arctica]
Length = 267
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 67 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 113
>gb|ABY57220.1| RpoB [Tortella arctica]
Length = 270
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 70 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 116
>gb|ABY57219.1| RpoB [Pleurochaete squarrosa]
Length = 281
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 70 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 116
>gb|ABY57218.1| RpoB [Pleurochaete luteola]
Length = 278
Score = 63.5 bits (153), Expect = 6e-08
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A TI G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 69 KTFLKKGQILADGAATIKGELALGKNILVAYMPWEGYNFEDAILISE 115
>gb|ACH78592.1| RNA polymerase subunit, partial (chloroplast) [Dicranum polysetum]
gi|197941976|gb|ACH78593.1| RNA polymerase subunit,
partial (chloroplast) [Dicranum polysetum]
Length = 187
Score = 62.8 bits (151), Expect = 1e-07
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A T+ G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 78 KTFLKKGQILADGAATLKGELALGKNILVAYMPWEGYNFEDAILISE 124
>gb|ACH78591.1| RNA polymerase subunit, partial (chloroplast) [Dicranum flagellare]
Length = 187
Score = 62.8 bits (151), Expect = 1e-07
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A T+ G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 78 KTFLKKGQILADGAATLKGELALGKNILVAYMPWEGYNFEDAILISE 124
>gb|ACH78590.1| RNA polymerase subunit, partial (chloroplast) [Dicranum flagellare]
Length = 187
Score = 62.8 bits (151), Expect = 1e-07
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A T+ G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 78 KTFLKKGQILADGAATLKGELALGKNILVAYMPWEGYNFEDAILISE 124
>gb|ACH78589.1| RNA polymerase subunit, partial (chloroplast) [Dicranum flagellare]
Length = 187
Score = 62.8 bits (151), Expect = 1e-07
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A T+ G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 78 KTFLKKGQILADGAATLKGELALGKNILVAYMPWEGYNFEDAILISE 124
>gb|ABY57225.1| RpoB [Tortella fragilis]
Length = 272
Score = 62.8 bits (151), Expect = 1e-07
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +1
Query: 67 QTFLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
+TFL G A T+ G+L+LGKN+LVAYMP EGYNFEDA+LISE
Sbjct: 72 KTFLKKGQILADGAATLKGELALGKNILVAYMPWEGYNFEDAILISE 118
>dbj|BAR73113.1| RNA polymerase beta subunit, partial (chloroplast) [Halodule
pinifolia]
Length = 161
Score = 62.4 bits (150), Expect = 1e-07
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +1
Query: 73 FLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
++ G A T+DG+L+LGKNVLVAYMP EGYNFEDAVLISE
Sbjct: 77 YIKKGQILADGAATVDGELALGKNVLVAYMPWEGYNFEDAVLISE 121
>dbj|BAJ07389.1| RNA polymerase beta subunit, partial (chloroplast) [Potamogeton
maackianus]
Length = 169
Score = 62.4 bits (150), Expect = 1e-07
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +1
Query: 73 FLVVGFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
++ G A T+DG+L+LGKNVLVAYMP EGYNFEDAVLISE
Sbjct: 77 YIKKGQILADGAATVDGELALGKNVLVAYMPWEGYNFEDAVLISE 121
>gb|AGT48612.1| RNA polymerase beta subunit, partial (chloroplast) [Dryobalanops
oblongifolia]
Length = 116
Score = 62.0 bits (149), Expect = 2e-07
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = +1
Query: 85 GFFYQSAAVTIDGKLSLGKNVLVAYMP*EGYNFEDAVLISE 207
G A T+DG+L+LGKNVLVAYMP EGYNFEDAVLISE
Sbjct: 69 GQILADGAATVDGELALGKNVLVAYMPWEGYNFEDAVLISE 109