BLASTX nr result
ID: Gardenia21_contig00024488
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Gardenia21_contig00024488
(918 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003620942.1| photosystem I assembly protein ycf3 [Medicag... 127 9e-27
gb|ERN02875.1| hypothetical protein AMTR_s00334p00015220 [Ambore... 126 3e-26
ref|XP_003599571.2| photosystem I assembly protein ycf3 [Medicag... 124 1e-25
pir||A05190 hypothetical protein 77 - common tobacco chloroplast... 117 2e-23
ref|YP_817483.1| photosystem I assembly protein ycf3 [Coffea ara... 109 3e-21
ref|XP_013443688.1| 30S ribosomal protein S4, putative [Medicago... 103 2e-20
ref|YP_009172278.1| hypothetical chloroplast RF34 (chloroplast) ... 105 4e-20
gb|AIS35684.1| hypothetical chloroplast RF34 (chloroplast) [Mese... 105 4e-20
ref|YP_009143640.1| photosystem I assembly protein Ycf3 (chlorop... 105 4e-20
gb|AJP62111.1| photosystem I assembly protein Ycf3 (chloroplast)... 105 4e-20
ref|YP_008999936.1| hypothetical chloroplast RF34 (chloroplast) ... 105 4e-20
ref|YP_007353916.1| photosystem I assembly protein Ycf3 (chlorop... 105 4e-20
ref|YP_005089335.1| ycf3 gene product (chloroplast) [Silene vulg... 105 4e-20
ref|YP_003359360.2| photosystem I assembly protein Ycf3 (chlorop... 105 4e-20
ref|YP_009000107.1| hypothetical chloroplast RF34 (chloroplast) ... 105 4e-20
gb|ABU85615.1| photosystem I assembly protein ycf3 [Scaevola aem... 105 4e-20
ref|YP_004376422.1| Ycf3 protein [Olea europaea subsp. europaea]... 105 4e-20
ref|YP_009144114.1| photosystem I assembly protein Ycf3 (chlorop... 105 5e-20
gb|AFB70727.1| photosystem I assembly protein Ycf3, partial (chl... 105 5e-20
ref|NP_054934.1| photosystem I assembly protein Ycf3 [Spinacia o... 105 6e-20
>ref|XP_003620942.1| photosystem I assembly protein ycf3 [Medicago truncatula]
gi|355495957|gb|AES77160.1| photosystem I assembly
protein ycf3 [Medicago truncatula]
Length = 70
Score = 127 bits (320), Expect = 9e-27
Identities = 60/66 (90%), Positives = 63/66 (95%)
Frame = -3
Query: 808 ETLKYGSKGRD*PTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWL 629
ETLKYGSKGR+ TYSDRGEQAIRQGDSEIAE+WFDQAAEYWKQAI+LTPGNYIEA NWL
Sbjct: 4 ETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNWL 63
Query: 628 KITGRF 611
KITGRF
Sbjct: 64 KITGRF 69
>gb|ERN02875.1| hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda]
Length = 70
Score = 126 bits (316), Expect = 3e-26
Identities = 60/69 (86%), Positives = 63/69 (91%)
Frame = -3
Query: 817 MR*ETLKYGSKGRD*PTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAH 638
MR ETLKYGSKGR+ YSDRGEQAIRQGDSEIAEAWFDQAAEYWKQA++LTPGNYIEA
Sbjct: 1 MRSETLKYGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGNYIEAQ 60
Query: 637 NWLKITGRF 611
NWLKIT RF
Sbjct: 61 NWLKITRRF 69
>ref|XP_003599571.2| photosystem I assembly protein ycf3 [Medicago truncatula]
gi|657392475|gb|AES69822.2| photosystem I assembly
protein ycf3 [Medicago truncatula]
Length = 70
Score = 124 bits (311), Expect = 1e-25
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = -3
Query: 808 ETLKYGSKGRD*PTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWL 629
ETLKYGSKGR+ T SDRGEQAIRQGDSEIAE+WFDQAAEYWKQAI+LTPGNYIEA NWL
Sbjct: 4 ETLKYGSKGRNLLTNSDRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNWL 63
Query: 628 KITGRF 611
KITGRF
Sbjct: 64 KITGRF 69
>pir||A05190 hypothetical protein 77 - common tobacco chloroplast
gi|225199|prf||1211235AD ORF 77
Length = 77
Score = 117 bits (292), Expect = 2e-23
Identities = 62/77 (80%), Positives = 66/77 (85%)
Frame = +2
Query: 638 MRFNIITRSK*YSLFPILSGLIEPSLRYFRISLSNGLFSTVGIGRSIPSLRTVLESFLPH 817
MRFNIIT SK YSLFPILSGLIEPSL FRISL NGLFS GIG SIPSLRTVLE+FLPH
Sbjct: 1 MRFNIITGSKRYSLFPILSGLIEPSLCNFRISLLNGLFSPAGIGSSIPSLRTVLENFLPH 60
Query: 818 TAQQSILLVCRFNLLYL 868
TAQQSILLV F+L ++
Sbjct: 61 TAQQSILLVSHFDLYHI 77
>ref|YP_817483.1| photosystem I assembly protein ycf3 [Coffea arabica]
gi|122153622|sp|A0A336.1|YCF3_COFAR RecName:
Full=Photosystem I assembly protein Ycf3
gi|116242165|gb|ABJ89680.1| photosystem I assembly
protein ycf3 [Coffea arabica]
Length = 168
Score = 109 bits (272), Expect = 3e-21
Identities = 50/50 (100%), Positives = 50/50 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRFG 608
RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRFG
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRFG 168
>ref|XP_013443688.1| 30S ribosomal protein S4, putative [Medicago truncatula]
gi|657371732|gb|KEH17713.1| 30S ribosomal protein S4,
putative [Medicago truncatula]
Length = 336
Score = 103 bits (256), Expect(2) = 2e-20
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = -3
Query: 781 RD*PTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
R+ YSDRGEQAI +GDSEIAEAWFDQAAEYWKQAI+LTPGNYIEA NWLKIT RF
Sbjct: 277 REGTAYSDRGEQAILEGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITKRF 333
Score = 24.3 bits (51), Expect(2) = 2e-20
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -1
Query: 810 RKLSSTVLREG 778
RKLSSTVLREG
Sbjct: 269 RKLSSTVLREG 279
>ref|YP_009172278.1| hypothetical chloroplast RF34 (chloroplast) [Colobanthus quitensis]
gi|930616905|gb|ALF99642.1| hypothetical chloroplast
RF34 (chloroplast) [Colobanthus quitensis]
Length = 168
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRF 167
>gb|AIS35684.1| hypothetical chloroplast RF34 (chloroplast) [Mesembryanthemum
crystallinum]
Length = 169
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRF 168
>ref|YP_009143640.1| photosystem I assembly protein Ycf3 (chloroplast) [Salicornia
brachiata] gi|836613930|ref|YP_009143724.1| photosystem
I assembly protein Ycf3 (chloroplast) [Salicornia
europaea] gi|836642804|ref|YP_009143808.1| photosystem I
assembly protein Ycf3 (chloroplast) [Salicornia
bigelovii] gi|648933084|gb|AIC37025.1| photosystem I
assembly protein Ycf3 (chloroplast) [Salicornia
brachiata] gi|648933169|gb|AIC37109.1| photosystem I
assembly protein Ycf3 (chloroplast) [Salicornia
europaea] gi|648933254|gb|AIC37193.1| photosystem I
assembly protein Ycf3 (chloroplast) [Salicornia
bigelovii]
Length = 168
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRF 167
>gb|AJP62111.1| photosystem I assembly protein Ycf3 (chloroplast) [Dianthus
longicalyx]
Length = 169
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRF 168
>ref|YP_008999936.1| hypothetical chloroplast RF34 (chloroplast) (chloroplast)
[Agrostemma githago] gi|576312302|ref|YP_009000186.1|
hypothetical chloroplast RF34 (chloroplast)
(chloroplast) [Silene paradoxa]
gi|555944022|gb|AGZ17926.1| hypothetical chloroplast
RF34 (chloroplast) [Agrostemma githago]
gi|555944275|gb|AGZ18176.1| hypothetical chloroplast
RF34 (chloroplast) [Silene paradoxa]
Length = 168
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRF 167
>ref|YP_007353916.1| photosystem I assembly protein Ycf3 (chloroplast) [Tectona grandis]
gi|438687605|emb|CCP47131.1| photosystem I assembly
protein Ycf3 (chloroplast) [Tectona grandis]
gi|438688289|emb|CCP47220.1| photosystem I assembly
protein Ycf3 (chloroplast) [Tectona grandis]
gi|438688413|emb|CCP47309.1| photosystem I assembly
protein Ycf3 (chloroplast) [Tectona grandis]
Length = 169
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITGRF 168
>ref|YP_005089335.1| ycf3 gene product (chloroplast) [Silene vulgaris]
gi|374249789|ref|YP_005089418.1| ycf3 gene product
(chloroplast) [Silene noctiflora]
gi|374249878|ref|YP_005089506.1| ycf3 gene product
(chloroplast) [Silene conica]
gi|374249951|ref|YP_005089578.1| ycf3 gene product
(chloroplast) [Silene latifolia]
gi|575925640|ref|YP_009000025.1| hypothetical
chloroplast RF34 (chloroplast) (chloroplast) [Silene
conoidea] gi|329755449|gb|AEC04013.1| hypothetical
chloroplast RF34 (chloroplast) [Silene conica]
gi|329755522|gb|AEC04085.1| hypothetical chloroplast
RF34 (chloroplast) [Silene latifolia]
gi|329755606|gb|AEC04168.1| hypothetical chloroplast
RF34 (chloroplast) [Silene noctiflora]
gi|329755687|gb|AEC04248.1| hypothetical chloroplast
RF34 (chloroplast) [Silene vulgaris]
gi|555944112|gb|AGZ18015.1| hypothetical chloroplast
RF34 (chloroplast) [Silene conoidea]
gi|916444559|gb|AKZ24475.1| photosystem I assembly
protein Ycf3 (plastid) [Silene vulgaris]
Length = 168
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRF 167
>ref|YP_003359360.2| photosystem I assembly protein Ycf3 (chloroplast) [Olea europaea]
gi|363413086|gb|ADA69927.2| photosystem I assembly
protein Ycf3 (chloroplast) [Olea europaea]
Length = 167
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 118 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITGRF 166
>ref|YP_009000107.1| hypothetical chloroplast RF34 (chloroplast) (chloroplast) [Silene
chalcedonica] gi|166235536|gb|ABY85451.1| ycf3 protein
[Silene chalcedonica] gi|555944195|gb|AGZ18097.1|
hypothetical chloroplast RF34 (chloroplast) [Silene
chalcedonica]
Length = 168
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRF 167
>gb|ABU85615.1| photosystem I assembly protein ycf3 [Scaevola aemula]
Length = 168
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRF 167
>ref|YP_004376422.1| Ycf3 protein [Olea europaea subsp. europaea]
gi|334700283|ref|YP_004563782.1| Ycf3 protein [Olea
europaea subsp. cuspidata]
gi|334701620|ref|YP_004564005.1| Ycf3 protein [Olea
woodiana subsp. woodiana]
gi|334701889|ref|YP_004564498.1| Ycf3 protein [Olea
europaea subsp. maroccana]
gi|404474412|ref|YP_006665781.1| hypothetical
chloroplast RF34 (chloroplast) [Elodea canadensis]
gi|731971832|ref|YP_009110603.1| Ycf3 protein
(chloroplast) [Hesperelaea palmeri]
gi|110456718|gb|ABG74821.1| YCF3 protein [Jasminum
subhumile] gi|290488948|gb|ADD30858.1| putative RF3
protein (chloroplast) [Ilex cornuta]
gi|291059254|gb|ADD72090.1| hypothetical chloroplast
RF34 (chloroplast) [Olea europaea]
gi|328795434|emb|CBR30316.1| Ycf3 protein [Olea europaea
subsp. europaea] gi|334084402|emb|CBR23831.1| Ycf3
protein [Olea europaea subsp. cuspidata]
gi|334084488|emb|CBR24622.1| Ycf3 protein [Olea europaea
subsp. europaea] gi|334084574|emb|CBR30407.1| Ycf3
protein [Olea europaea subsp. europaea]
gi|334084660|emb|CBS29351.1| Ycf3 protein [Olea woodiana
subsp. woodiana] gi|334084865|emb|CBS29241.1| Ycf3
protein [Olea europaea subsp. maroccana]
gi|334084951|emb|CBJ04299.1| Ycf3 protein [Olea europaea
subsp. cuspidata] gi|334085037|emb|CBR23739.1| Ycf3
protein [Olea europaea subsp. cuspidata]
gi|374094597|gb|AEY84653.1| hypothetical chloroplast
RF34 (chloroplast) [Elodea canadensis]
gi|510934405|emb|CCQ09103.1| Ycf3 protein (chloroplast)
[Olea europaea subsp. europaea]
gi|725798287|emb|CED79763.1| Ycf3 protein (chloroplast)
[Hesperelaea palmeri]
Length = 168
Score = 105 bits (263), Expect = 4e-20
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITGRF 167
>ref|YP_009144114.1| photosystem I assembly protein Ycf3 (chloroplast) [Wollemia
nobilis] gi|814936740|gb|AKE36587.1| photosystem I
assembly protein Ycf3 (chloroplast) [Wollemia nobilis]
Length = 180
Score = 105 bits (262), Expect = 5e-20
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = -3
Query: 769 TYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRFG 608
TY DRGEQAIRQGD EIAEAWFDQAAEYWKQAI+L P NYIEA NWLKITGRFG
Sbjct: 126 TYPDRGEQAIRQGDPEIAEAWFDQAAEYWKQAIALAPSNYIEAQNWLKITGRFG 179
>gb|AFB70727.1| photosystem I assembly protein Ycf3, partial (chloroplast) [Mollugo
verticillata]
Length = 217
Score = 105 bits (262), Expect = 5e-20
Identities = 47/49 (95%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSE+AEAWFDQAAEYWKQAI+LTPGNYIEAHNWLKITGRF
Sbjct: 168 RGEQAIRQGDSEVAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRF 216
>ref|NP_054934.1| photosystem I assembly protein Ycf3 [Spinacia oleracea]
gi|18203267|sp|Q9M3M5.1|YCF3_SPIOL RecName:
Full=Photosystem I assembly protein Ycf3
gi|7636107|emb|CAB88727.1| ycf3 protein (chloroplast)
[Spinacia oleracea]
Length = 165
Score = 105 bits (261), Expect = 6e-20
Identities = 47/49 (95%), Positives = 49/49 (100%)
Frame = -3
Query: 757 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIEAHNWLKITGRF 611
RGEQAIRQGDSEIAEAWFDQAAEYWKQA++LTPGNYIEAHNWLKITGRF
Sbjct: 116 RGEQAIRQGDSEIAEAWFDQAAEYWKQALTLTPGNYIEAHNWLKITGRF 164