BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00019032
         (667 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009119466.1| PREDICTED: uncharacterized protein LOC103844...   106   2e-22
gb|ABK28199.1| unknown [Arabidopsis thaliana]                         106   5e-22
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali...   106   5e-22
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali...   105   1e-21
ref|XP_009344908.1| PREDICTED: uncharacterized protein LOC103936...    82   1e-21
ref|XP_008341993.1| PREDICTED: uncharacterized protein LOC103404...    80   2e-21
ref|XP_008344356.1| PREDICTED: putative ribonuclease H protein A...    80   2e-21
ref|XP_009107495.1| PREDICTED: putative ribonuclease H protein A...   108   3e-21
gb|AID60103.1| hypothetical protein [Brassica napus]                  107   6e-21
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...   103   9e-20
gb|AIK35195.1| LINE-type retrotransposon LIb DNA [Ipomoea batatas]     89   5e-19
ref|XP_009147282.1| PREDICTED: putative ribonuclease H protein A...   100   1e-18
ref|XP_009124282.1| PREDICTED: putative ribonuclease H protein A...    99   2e-18
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...    99   2e-18
ref|XP_009150833.1| PREDICTED: putative ribonuclease H protein A...    97   7e-18
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ...    97   9e-18
ref|NP_680382.1| polynucleotidyl transferase, ribonuclease H-lik...    97   9e-18
ref|XP_008357106.1| PREDICTED: putative ribonuclease H protein A...    69   1e-17
ref|XP_009115103.1| PREDICTED: putative ribonuclease H protein A...    97   1e-17
ref|XP_009101981.1| PREDICTED: putative ribonuclease H protein A...    97   1e-17

>ref|XP_009119466.1| PREDICTED: uncharacterized protein LOC103844431 [Brassica rapa]
          Length = 1834

 Score =  106 bits (265), Expect(2) = 2e-22
 Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
 Frame = +1

Query: 19   QSEVGKRRELYWPMLFQQVVYWAWSARNELIH----KGSDRMMKVKPEVLIQQALLAQEL 186
            QS  G+R    WP +F   V+W W  R   +     K  DR+  VK +   Q+  LA   
Sbjct: 1596 QSANGER----WPTMFALTVWWCWKWRCGYVFGETGKCPDRVKFVKDKT--QEVTLANNK 1649

Query: 187  NTQKGGMGVKQVKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSAN 366
                  +G+++ +++ W +P  GW KLN DGAS+ NPG A+AGG++RDE G W  GF+ N
Sbjct: 1650 LRLHLAVGLREERHIKWRRPSNGWCKLNTDGASRGNPGLATAGGVMRDENGEWQGGFAVN 1709

Query: 367  IGKASNVAAELWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
            IG  S   AELW +              + VE DS   +  +K G
Sbjct: 1710 IGICSATLAELWGVYYGFVIAWENGIRRLEVEVDSATVVGFLKTG 1754



 Score = 26.6 bits (57), Expect(2) = 2e-22
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 557  RDWECSMEHIWRKNGC-ADHLAKKGWRLKMDVTIF 658
            RDW   + H++R+  C AD LA   + L   V  F
Sbjct: 1774 RDWLVKISHVYREANCLADGLANYAFSLSFGVHYF 1808


>gb|ABK28199.1| unknown [Arabidopsis thaliana]
          Length = 315

 Score =  106 bits (265), Expect(2) = 5e-22
 Identities = 63/168 (37%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
 Frame = +1

Query: 22  SEVGKRR---ELYWPMLFQQVVYWAWSARNELIH----KGSDRMMKVKPEVLIQQALLAQ 180
           + +G RR   E  W  LF   ++WAW  R   I     K  DR+  +K   L ++  +A 
Sbjct: 69  ANLGDRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKD--LARETSMAH 126

Query: 181 EL-NTQKGGMGVKQVKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGF 357
            +  T  GG G +  + + W KP +GW KLN DGAS+ NPG ASAGG+LRDE+G+W  GF
Sbjct: 127 VIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGF 186

Query: 358 SANIGKASNVAAELWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
           + NIG  S   AELW +              + +E DS++ +  +K G
Sbjct: 187 ALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIG 234



 Score = 25.4 bits (54), Expect(2) = 5e-22
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 527 LVAEIKEMMRRDWECSMEHIWRK-NGCADHLAKKGWRLKM 643
           LV    + + RDW   + H++R+ N  AD LA   + L +
Sbjct: 244 LVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPL 283


>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|20197456|gb|AAM15081.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 314

 Score =  106 bits (265), Expect(2) = 5e-22
 Identities = 63/168 (37%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
 Frame = +1

Query: 22  SEVGKRR---ELYWPMLFQQVVYWAWSARNELIH----KGSDRMMKVKPEVLIQQALLAQ 180
           + +G RR   E  W  LF   ++WAW  R   I     K  DR+  +K   L ++  +A 
Sbjct: 69  ANLGDRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKD--LARETSMAH 126

Query: 181 EL-NTQKGGMGVKQVKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGF 357
            +  T  GG G +  + + W KP +GW KLN DGAS+ NPG ASAGG+LRDE+G+W  GF
Sbjct: 127 VIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGF 186

Query: 358 SANIGKASNVAAELWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
           + NIG  S   AELW +              + +E DS++ +  +K G
Sbjct: 187 ALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIG 234



 Score = 25.4 bits (54), Expect(2) = 5e-22
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 527 LVAEIKEMMRRDWECSMEHIWRK-NGCADHLAKKGWRLKM 643
           LV    + + RDW   + H++R+ N  AD LA   + L +
Sbjct: 244 LVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPL 283


>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
          Length = 314

 Score =  105 bits (262), Expect(2) = 1e-21
 Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
 Frame = +1

Query: 22  SEVGKRR---ELYWPMLFQQVVYWAWSARNELIH----KGSDRMMKVKPEVLIQQALLAQ 180
           + +G RR   E  W  LF   ++WAW  R   I     K  DR+  +K   L ++  +A 
Sbjct: 69  ANLGDRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKD--LARETSMAH 126

Query: 181 EL-NTQKGGMGVKQVKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGF 357
            +  T  GG G +  + + W KP +GW KLN DGAS+ NPG ASAGG+LRDE+G+W  GF
Sbjct: 127 VIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGF 186

Query: 358 SANIGKASNVAAELWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIK 495
           + NIG  S   AELW +              + +E DS++ +  +K
Sbjct: 187 ALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLK 232



 Score = 25.4 bits (54), Expect(2) = 1e-21
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 527 LVAEIKEMMRRDWECSMEHIWRK-NGCADHLAKKGWRLKM 643
           LV    + + RDW   + H++R+ N  AD LA   + L +
Sbjct: 244 LVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPL 283


>ref|XP_009344908.1| PREDICTED: uncharacterized protein LOC103936764 [Pyrus x
            bretschneideri]
          Length = 1365

 Score = 82.4 bits (202), Expect(2) = 1e-21
 Identities = 41/151 (27%), Positives = 74/151 (49%)
 Frame = +1

Query: 46   LYWPMLFQQVVYWAWSARNELIHKGSDRMMKVKPEVLIQQALLAQELNTQKGGMGVKQVK 225
            L W ++F   +++ W  RN L+     +      + + Q A    + N        +Q+ 
Sbjct: 1134 LPWNLIFASTLWYCWKGRNNLVFNDGQQPPVSPQKFIFQFARDWYDANKSTSSKPPRQII 1193

Query: 226  YLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAELWV 405
             ++W  PP G  K+N DG+        SAGG++R+ +G W+ GF+AN+G+ + + AELW 
Sbjct: 1194 SIHWIHPPIGRYKINTDGSCNDPFRHISAGGLIRNSEGDWIKGFAANLGRGTIMEAELWG 1253

Query: 406  IXXXXXXXXXXXXXXVMVETDSKVSIDLIKR 498
            +              V++E DS  ++ LI++
Sbjct: 1254 VFMGLSIAWDEGCRDVILECDSWDAVTLIQK 1284



 Score = 48.1 bits (113), Expect(2) = 1e-21
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +2

Query: 494  KEAMEESPHWNLVAEIKEMMRRDWECSMEHIWRK-NGCADHLAKKGWRLKMDVTIFRSP 667
            K  ++  P +NL+ + KE + ++W C + HI+R+ N  ADH+A  G  L + + +F SP
Sbjct: 1284 KPILDSHPLYNLIIDCKEAIGKNWRCEVTHIYREMNASADHMADLGHGLSLGLHVFVSP 1342


>ref|XP_008341993.1| PREDICTED: uncharacterized protein LOC103404803 [Malus domestica]
          Length = 1433

 Score = 79.7 bits (195), Expect(2) = 2e-21
 Identities = 40/142 (28%), Positives = 70/142 (49%)
 Frame = +1

Query: 46   LYWPMLFQQVVYWAWSARNELIHKGSDRMMKVKPEVLIQQALLAQELNTQKGGMGVKQVK 225
            L W ++F   +++ W  RN        +      +V+ Q A    + N        +Q+ 
Sbjct: 1202 LPWNLIFASTLWYCWKRRNNFXFNNGQQPPVSPLKVIFQFARDWYDANKCXSSKPPRQII 1261

Query: 226  YLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAELWV 405
             ++W +PP G  K+N DG+ +      SAGG++R+ +G W+ GF+AN+G+ + + AELW 
Sbjct: 1262 SIHWIRPPIGRYKINTDGSCKDXFSHISAGGLIRNSEGDWIXGFAANLGRGTXMEAELWG 1321

Query: 406  IXXXXXXXXXXXXXXVMVETDS 471
            +              V++E DS
Sbjct: 1322 VLMGLTIAWDEGXRDVILECDS 1343



 Score = 50.4 bits (119), Expect(2) = 2e-21
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +2

Query: 494  KEAMEESPHWNLVAEIKEMMRRDWECSMEHIWR-KNGCADHLAKKGWRLKMDVTIFRSP 667
            K  +   P +NL+ + KE + R+W C + HI+R KN  ADH+A  G  L + + +F SP
Sbjct: 1352 KPMLVSHPLYNLILDCKEAIERNWRCEVTHIYREKNASADHMADLGHGLSLGLHVFDSP 1410


>ref|XP_008344356.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
           domestica]
          Length = 348

 Score = 79.7 bits (195), Expect(2) = 2e-21
 Identities = 39/142 (27%), Positives = 69/142 (48%)
 Frame = +1

Query: 46  LYWPMLFQQVVYWAWSARNELIHKGSDRMMKVKPEVLIQQALLAQELNTQKGGMGVKQVK 225
           L W ++F   +++ W  RN        +      +V+ Q A    + N        +Q+ 
Sbjct: 117 LPWNLIFASTLWYCWKRRNNFXFNNGQQPPVSPLKVIFQFARDWYDANKCXSSKPPRQII 176

Query: 226 YLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAELWV 405
            ++W +PP G  K+N DG+ +      SAGG++R+ +G W+ GF+AN+G+ + + AELW 
Sbjct: 177 SIHWIRPPIGRYKINTDGSCKDXFSHISAGGLIRNSEGDWIXGFAANLGRGTXMEAELWG 236

Query: 406 IXXXXXXXXXXXXXXVMVETDS 471
           +              V++E DS
Sbjct: 237 VLMGLTIAWDEGCRDVILECDS 258



 Score = 50.4 bits (119), Expect(2) = 2e-21
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +2

Query: 494 KEAMEESPHWNLVAEIKEMMRRDWECSMEHIWR-KNGCADHLAKKGWRLKMDVTIFRSP 667
           K  +   P +NL+ + KE + R+W C + HI+R KN  ADH+A  G  L + + +F SP
Sbjct: 267 KPMLVSHPLYNLILDCKEAIERNWRCEVTHIYREKNASADHMADLGHGLSLGLHVFDSP 325


>ref|XP_009107495.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
           rapa]
          Length = 305

 Score =  108 bits (270), Expect = 3e-21
 Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
 Frame = +1

Query: 10  NIMQSEVGKRRELYWPMLFQQVVYWAWSARNELIHKGSDRMMKVKPEVLIQQALLAQELN 189
           N+  SEV     L W +LF   V+WAW  R   +  G  R+ + + + + +QA      +
Sbjct: 94  NLSSSEVKTETGL-WVVLFAVAVWWAWKWRCGNVF-GVKRLCRDRVQFVKEQAKEINMCS 151

Query: 190 TQKGGMGVKQV-KYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSAN 366
            +K  + + +V +++ WEKP  GW  +N DGAS+ NPG A+AGG+LRDE GSWL GF  N
Sbjct: 152 AKKEEVRITRVERWIKWEKPLTGWFMVNTDGASRGNPGLATAGGVLRDENGSWLCGFGLN 211

Query: 367 IGKASNVAAELWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
           IG+ S   AELW +              V VE DS V +   + G
Sbjct: 212 IGRCSAPLAELWGVYYGLLIAWQKRVRCVEVEVDSAVVVGFFQTG 256


>gb|AID60103.1| hypothetical protein [Brassica napus]
          Length = 620

 Score =  107 bits (267), Expect = 6e-21
 Identities = 59/154 (38%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
 Frame = +1

Query: 52  WPMLFQQVVYWAWSARNELIH----KGSDRMMKVKPEVLIQQALLAQELNTQKGGMGVKQ 219
           WP LF   V+W W  R   +     K  DR+  VK +   Q+ + A +   +   +GV  
Sbjct: 389 WPSLFALTVWWCWKWRCGYVFGEIGKCRDRVRFVKDKA--QEVIKANKKVREPSAIGVHV 446

Query: 220 VKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAEL 399
            + + W  P  GW+KLN DGAS+ NPG A+AGG LRDE+G W+ GFS NIG  S   AEL
Sbjct: 447 ERQIAWFVPENGWVKLNTDGASRGNPGLATAGGALRDEEGKWIGGFSLNIGICSAPLAEL 506

Query: 400 WVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
           W +              + VE DSK  +  +K G
Sbjct: 507 WGVYYGLCIAWDKGIRKLEVEVDSKSVVGFLKTG 540


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 676

 Score =  103 bits (257), Expect = 9e-20
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
 Frame = +1

Query: 10  NIMQSEVGKRRELYWPMLFQQVVYWAWSARNELIHKGSDRMMKVKPEVLIQQALLAQELN 189
           N+ +    +RR   WP LF   V+W W  R   +  G D   + + + L       +  +
Sbjct: 433 NLKERSDSERRS--WPTLFALTVWWGWKWRCGYVF-GEDSRCRDRVKFLKSAVAEVEAAH 489

Query: 190 TQKGGMGVKQV---KYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFS 360
               G   + V   + + W KP +GW+ +N DGAS  NPG+A+AGG++RDE GSWL GF+
Sbjct: 490 LAANGDAREDVLVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFA 549

Query: 361 ANIGKASNVAAELWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRGHG 507
            NIG  S   AELW +              V +E DS + +  ++ G G
Sbjct: 550 LNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIG 598


>gb|AIK35195.1| LINE-type retrotransposon LIb DNA [Ipomoea batatas]
          Length = 1836

 Score = 88.6 bits (218), Expect(2) = 5e-19
 Identities = 45/151 (29%), Positives = 73/151 (48%)
 Frame = +1

Query: 40   RELYWPMLFQQVVYWAWSARNELIHKGSDRMMKVKPEVLIQQALLAQELNTQKGGMGVKQ 219
            R + W ++F  +++  W  RN  +            ++  Q+A  AQ       G    +
Sbjct: 1605 RGISWRLIFPYILWNMWKGRNNQVFNNVCTNGNAIVKIAEQEASEAQRFLLPHAGPLRAR 1664

Query: 220  VKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAEL 399
              ++ W  P  G++K+N DGA + N G ASAGG+LRD  G+W+ GFS NIG  ++  AEL
Sbjct: 1665 QLWIPWSPPQPGFVKMNSDGAMKANSGMASAGGLLRDHMGNWIVGFSTNIGHTNSFLAEL 1724

Query: 400  WVIXXXXXXXXXXXXXXVMVETDSKVSIDLI 492
            W                ++ ETDS+  + ++
Sbjct: 1725 WGFREGLVIAKNRGYNHIIAETDSEAVVQVL 1755



 Score = 33.1 bits (74), Expect(2) = 5e-19
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 521  WNLVAEIKEMMRRDWECSMEHIWRK-NGCADHLAKKGWRLKMDVTIFRSP 667
            + L+A+ K ++ +  EC + H +R+ N CADHLA  G  +    T +  P
Sbjct: 1766 FTLLADCKSLIHQFQECRIMHTFREGNQCADHLANIGQSITSGTTWWDHP 1815


>ref|XP_009147282.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
           rapa]
          Length = 308

 Score =  100 bits (248), Expect = 1e-18
 Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
 Frame = +1

Query: 52  WPMLFQQVVYWAWSARNELIH----KGSDRMMKVKPEVLIQQALLAQELNTQKGGMGVKQ 219
           W +LF   V+W W  R   +     K  DR+  VK +    + +LA +       +GV+ 
Sbjct: 77  WAILFALTVWWCWKWRCGYVFGETGKCRDRVKFVKDKA--HEVVLANKKLKHHLAVGVRV 134

Query: 220 VKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAEL 399
            K ++W +P   W K+N DGAS+ NPG A+AGG+LRDE G W  GF+ NIG  S   AEL
Sbjct: 135 EKRISWIRPANSWCKMNTDGASRGNPGLATAGGVLRDEYGEWKGGFAVNIGICSASLAEL 194

Query: 400 WVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
           W +              + VE DS   +D ++ G
Sbjct: 195 WGVYYGLCIAWDRGIRRLEVEVDSASVVDFLRTG 228


>ref|XP_009124282.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
          Length = 1011

 Score = 99.4 bits (246), Expect = 2e-18
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
 Frame = +1

Query: 22   SEVGKRRELYWPMLFQQVVYWAWSAR-NELIHKGS---DRMMKVKPEVLIQQALLAQELN 189
            S+ G   E+ WP  F   V+W W  R   +  K S   DR+  ++   L ++ + A E  
Sbjct: 770  SDNGTGSEIPWPTTFALAVWWGWKWRCGNIFGKNSLWRDRVGFLRN--LAKEVMSANEAE 827

Query: 190  TQKGGMGVKQVKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANI 369
                 +  +  + + W  P  GW+KLN DG+S  NPG A+AGG+LR+ +G W  GF+ NI
Sbjct: 828  KGNSNVDHRTERMVGWAPPRSGWMKLNTDGSSHGNPGAATAGGVLRNGEGEWCGGFALNI 887

Query: 370  GKASNVAAELWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRGHGRKSSL 522
            G+   + AELW +              + +E DS+V ++ +  G G   SL
Sbjct: 888  GRCGALLAELWGVYYGLVAAWEKGIRRLELEVDSQVVVEFLTIGIGDTHSL 938


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
 Frame = +1

Query: 52  WPMLFQQVVYWAWSARNELIHKGS----DRMMKVKPEVLIQQALLAQELNTQKGGMGVKQ 219
           WP +F   V+W W  R   I  G+    DR+  +K   L ++  +A     +   + V +
Sbjct: 90  WPTVFVMAVWWGWKWRCGNIFGGNGKCRDRVKFIKD--LAEEVAIANAF-VKGNEVRVSR 146

Query: 220 VKYL-NWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAE 396
           V+ L +W  P  GW+KLN DGAS+ NPG A+AGG+LRD  G+W+ GF+ NIG  S   AE
Sbjct: 147 VERLVSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAE 206

Query: 397 LWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
           LW +              V +E DSK+ +  +  G
Sbjct: 207 LWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTG 241


>ref|XP_009150833.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
           rapa]
          Length = 188

 Score = 97.4 bits (241), Expect = 7e-18
 Identities = 45/93 (48%), Positives = 56/93 (60%)
 Frame = +1

Query: 223 KYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAELW 402
           +++ WEKPP GW K+N DGAS+ NPG A+AGG+LRDE GSWL GF  NIG+ S   AELW
Sbjct: 16  RWIKWEKPPTGWFKVNTDGASRGNPGLATAGGVLRDENGSWLCGFGLNIGRCSAPLAELW 75

Query: 403 VIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
            +              V VE DS V +   + G
Sbjct: 76  GVYYGLLIAWQKGVRCVEVEVDSAVVVGFFQTG 108


>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 308

 Score = 97.1 bits (240), Expect = 9e-18
 Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 4/157 (2%)
 Frame = +1

Query: 43  ELYWPMLFQQVVYWAWSARNELIH----KGSDRMMKVKPEVLIQQALLAQELNTQKGGMG 210
           ++ W  +F  +++W W  R   I     K  DR+  VK  V+  +   A   N   G   
Sbjct: 74  DIPWSTIFAVIIWWGWKWRCSNIFGENTKCRDRVKFVKEWVV--EVYRAHLGNALVGSTQ 131

Query: 211 VKQVKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVA 390
            +  + + W  P  GW+K+N DGAS+ NPG ASAGG+LRD +G+W  GFS NIG+ S   
Sbjct: 132 PRVERLIGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQH 191

Query: 391 AELWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
           AELW +              V +E DS+  +  +K G
Sbjct: 192 AELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTG 228


>ref|NP_680382.1| polynucleotidyl transferase, ribonuclease H-like superfamily
           protein [Arabidopsis thaliana]
           gi|332007502|gb|AED94885.1| polynucleotidyl transferase,
           ribonuclease H-like superfamily protein [Arabidopsis
           thaliana]
          Length = 258

 Score = 97.1 bits (240), Expect = 9e-18
 Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 4/157 (2%)
 Frame = +1

Query: 43  ELYWPMLFQQVVYWAWSARNELIH----KGSDRMMKVKPEVLIQQALLAQELNTQKGGMG 210
           ++ W  +F  +++W W  R   I     K  DR+  VK  V+  +   A   N   G   
Sbjct: 74  DIPWSTIFAVIIWWGWKWRCSNIFGENTKCRDRVKFVKEWVV--EVYRAHLGNALVGSTQ 131

Query: 211 VKQVKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVA 390
            +  + + W  P  GW+K+N DGAS+ NPG ASAGG+LRD +G+W  GFS NIG+ S   
Sbjct: 132 PRVERLIGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQH 191

Query: 391 AELWVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
           AELW +              V +E DS+  +  +K G
Sbjct: 192 AELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTG 228


>ref|XP_008357106.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
           domestica]
          Length = 246

 Score = 68.9 bits (167), Expect(2) = 1e-17
 Identities = 36/151 (23%), Positives = 72/151 (47%)
 Frame = +1

Query: 46  LYWPMLFQQVVYWAWSARNELIHKGSDRMMKVKPEVLIQQALLAQELNTQKGGMGVKQVK 225
           L W ++F   +++ W  RN  +     +      + + Q A    + N        +Q+ 
Sbjct: 15  LPWNLIFASTLWYCWKGRNNFVFNNGQQSPVSPHKFIFQFARDWYDANKCSYSKPPRQII 74

Query: 226 YLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAELWV 405
            ++W +PP G  K+N+D   +      SA G++R+ +G  + GF+AN+G+ + + AELW 
Sbjct: 75  SIHWIRPPIGRYKINIDEGCKDPFSHISARGLIRNSEGDGIKGFAANLGRGTIMEAELWG 134

Query: 406 IXXXXXXXXXXXXXXVMVETDSKVSIDLIKR 498
           +              V+++ DS  ++ LI++
Sbjct: 135 VFMGLSIAWDEGCKDVILKCDSWDAVILIQK 165



 Score = 48.5 bits (114), Expect(2) = 1e-17
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = +2

Query: 494 KEAMEESPHWNLVAEIKEMMRRDWECSMEHIWRKNGC-ADHLAKKGWRLKMDVTIFRSP 667
           K  +   P +NL+ + K+ + ++W+C + HI+R+N   ADH+A  G+ L + + +F SP
Sbjct: 165 KRILVSHPLYNLIIDCKKAIEKNWKCEVTHIYRENNASADHMADLGYGLSLGLHVFVSP 223


>ref|XP_009115103.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
           rapa]
          Length = 308

 Score = 96.7 bits (239), Expect = 1e-17
 Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 3/160 (1%)
 Frame = +1

Query: 52  WPMLFQQVVYWAWSARNELIHKGSDRMMKVKPEVL---IQQALLAQELNTQKGGMGVKQV 222
           W   F   V+W W  R   +  G +R+ K + + L     + + A++  ++K   G +  
Sbjct: 77  WATTFSLAVWWGWKWRCGNVF-GDNRLWKDRVKFLRNLATEVMAAKDAESRKWDRGGRTE 135

Query: 223 KYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAELW 402
             + W  P  GW+KLN DGAS  NPG A+AGG+LR+  G W  GF  NIG+ S   AELW
Sbjct: 136 IMIGWTPPRVGWMKLNTDGASHGNPGLATAGGVLRNGDGEWCGGFVLNIGRCSAPLAELW 195

Query: 403 VIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRGHGRKSSL 522
            +              + VE DSK+ ++ +  G G    L
Sbjct: 196 GVYYGLVIAWEKGISRLEVEVDSKMVVEFLTMGIGETHPL 235


>ref|XP_009101981.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
          Length = 1235

 Score = 96.7 bits (239), Expect = 1e-17
 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
 Frame = +1

Query: 52   WPMLFQQVVYWAWSARNELIH----KGSDRMMKVKPEVLIQQALLAQELNTQKGGMGVKQ 219
            WP LF   V+W W  R   +     K  DR+  V+ +   ++ L A +        G++ 
Sbjct: 1004 WPTLFALTVWWCWKWRCGYVFGEVGKCRDRVEFVRDKA--KEVLAAYKNLRVHSPGGLRV 1061

Query: 220  VKYLNWEKPPQGWIKLNVDGASQHNPGEASAGGILRDEQGSWLAGFSANIGKASNVAAEL 399
             K + W +P   W+KLN DGA++ NPG A+AGG++RDE G+W  GF+ NIG  S   AEL
Sbjct: 1062 EKQIAWHRPESNWVKLNTDGAARGNPGLATAGGVVRDEYGTWRGGFAINIGICSAPLAEL 1121

Query: 400  WVIXXXXXXXXXXXXXXVMVETDSKVSIDLIKRG 501
            W +              V VE DS+  +  ++ G
Sbjct: 1122 WGVYYGLCIAWDRGFRRVEVEVDSECVVGFLQTG 1155