BLASTX nr result
ID: Gardenia21_contig00005643
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Gardenia21_contig00005643
(2051 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CDO99584.1| unnamed protein product [Coffea canephora] 1036 0.0
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein... 765 0.0
ref|XP_009799534.1| PREDICTED: RNA polymerase-associated protein... 759 0.0
ref|XP_009623037.1| PREDICTED: RNA polymerase-associated protein... 758 0.0
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein... 758 0.0
ref|XP_011096256.1| PREDICTED: RNA polymerase-associated protein... 750 0.0
ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein... 740 0.0
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ... 734 0.0
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 731 0.0
ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein... 727 0.0
ref|XP_011027887.1| PREDICTED: RNA polymerase-associated protein... 724 0.0
ref|XP_010646904.1| PREDICTED: RNA polymerase-associated protein... 723 0.0
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop... 721 0.0
ref|XP_008453742.1| PREDICTED: RNA polymerase-associated protein... 719 0.0
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein... 713 0.0
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop... 712 0.0
ref|XP_011047833.1| PREDICTED: RNA polymerase-associated protein... 711 0.0
ref|XP_011047832.1| PREDICTED: RNA polymerase-associated protein... 711 0.0
ref|XP_010100559.1| RNA polymerase-associated protein RTF1-like ... 709 0.0
ref|XP_014509564.1| PREDICTED: protein RTF1 homolog [Vigna radia... 708 0.0
>emb|CDO99584.1| unnamed protein product [Coffea canephora]
Length = 631
Score = 1036 bits (2679), Expect = 0.0
Identities = 529/610 (86%), Positives = 543/610 (89%), Gaps = 4/610 (0%)
Frame = -2
Query: 1885 GRTGESERRRRKVPXXXXXXXXXXXXXXXXXXXSNRKPSGSQVPLKKRLDPLERDEDDSN 1706
GRTGESERRRRKVP SNRKPSGSQVPLKKRLDPLERDEDDSN
Sbjct: 16 GRTGESERRRRKVPYSDDESDSKDDDYDDDHAYSNRKPSGSQVPLKKRLDPLERDEDDSN 75
Query: 1705 HEEDGYHEGDSDDNSVGSDLYKDEDDRKKLAQMSELQREMILADRASTRSDREMHEKFAK 1526
HEEDGYHEGDSDD+SVGSDLYKDEDDRKKLAQMSELQREMILADRASTRSDREMHEKFAK
Sbjct: 76 HEEDGYHEGDSDDDSVGSDLYKDEDDRKKLAQMSELQREMILADRASTRSDREMHEKFAK 135
Query: 1525 KRKGSPTQTHSRVVRSSTRFXXXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGT 1346
KRKGSPTQTHSR VRSSTRF ALNEIRAKRMRQQDPEAHRKLRDATRDGSG+
Sbjct: 136 KRKGSPTQTHSRAVRSSTRFADRTAAKDDALNEIRAKRMRQQDPEAHRKLRDATRDGSGS 195
Query: 1345 RGYSPVKRRPFTAATIGSPTQSGSVSHSDEEESTGDGGMADSDEEKTSAESKWPTYEDIK 1166
RGYSPVKRRPFTAATIGSPT+SGS SHSDEEESTGDGGMADSDE+KTSAESKWPTYEDIK
Sbjct: 196 RGYSPVKRRPFTAATIGSPTRSGSASHSDEEESTGDGGMADSDEDKTSAESKWPTYEDIK 255
Query: 1165 EITIRRSKLAKWFMEPFFEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLD 986
EITIRRSKLAKWFMEPFFEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLD
Sbjct: 256 EITIRRSKLAKWFMEPFFEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLD 315
Query: 985 NKTTYKYLNVVWGNENTAARWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKK 806
NKTTYKYLNVVWGNEN+AARWQMAMISDSPPAKEEYDQWVREVER GGRMPSK EVLEKK
Sbjct: 316 NKTTYKYLNVVWGNENSAARWQMAMISDSPPAKEEYDQWVREVERSGGRMPSKLEVLEKK 375
Query: 805 EAIQKTNSFVYSAETVKQMLQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIK 626
EAIQKTNSFVYSAETVKQMLQEKKSATWRPLNVAAEKDRLR EME+AK NDELEVERIK
Sbjct: 376 EAIQKTNSFVYSAETVKQMLQEKKSATWRPLNVAAEKDRLRTEMEVAKINNDELEVERIK 435
Query: 625 ARLQELEASRQAHEMDKKAVRLAEMNRKNRVENFKNASGLKQVSAS----EAGYDPFSRR 458
ARLQELEASRQAHEMDKKA+RLAEMNRKNRVENFKNASGLK V+AS EAGYDPFSRR
Sbjct: 436 ARLQELEASRQAHEMDKKAIRLAEMNRKNRVENFKNASGLKPVNASLKAGEAGYDPFSRR 495
Query: 457 WTRSRNYYVKNPNNGEXXXXXXXXXXXXXXXXXDGTVGVSSKTGKXXXXXAEDGKLVDTR 278
WTRSRNYYVKNP +GE +GT VS++ GK A+DGKLVDT
Sbjct: 496 WTRSRNYYVKNPIDGEATAADGEATAASAVNNRNGTAVVSTEMGKAATATADDGKLVDTS 555
Query: 277 APVDQGRESNMLHGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRH 98
APVDQGRESNMLHGF+LEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRH
Sbjct: 556 APVDQGRESNMLHGFKLEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRH 615
Query: 97 ALTLTVSDYK 68
ALTLTVSDYK
Sbjct: 616 ALTLTVSDYK 625
>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
lycopersicum]
Length = 645
Score = 765 bits (1975), Expect = 0.0
Identities = 404/585 (69%), Positives = 466/585 (79%), Gaps = 14/585 (2%)
Frame = -2
Query: 1780 RKPSGSQVPLKKRLDPLERDEDDSNHEE----DGYHEGDSDDNSVGSDLYKDEDDRKKLA 1613
RK SGSQVPLKKRLDP ERD+D S+H E DGY +SDD+S+GSDLYKD+DDR+KLA
Sbjct: 57 RKLSGSQVPLKKRLDPQERDDDHSSHGEGNDGDGYGN-ESDDDSIGSDLYKDDDDRQKLA 115
Query: 1612 QMSELQREMILADRASTRSDREMHEKF----AKKRKGSPTQTHSRVVRSSTRFXXXXXXX 1445
QM+EL+REMIL DRA+ +SDR +H+K A+ RK S +HSR +RSSTR
Sbjct: 116 QMTELEREMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADR 175
Query: 1444 XXALNEIRAKRMRQQ-DPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGS-PTQSGSV 1271
ALNEIRAKR RQQ DPE KLRDA R GSG+RGYSP+KRR FTAA++GS PT+ S
Sbjct: 176 DDALNEIRAKRARQQQDPEGQFKLRDAARKGSGSRGYSPIKRRSFTAASLGSSPTRGESD 235
Query: 1270 SHSDEEESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFEDLIVGC 1091
SHS+E +S+ D GM DSD++K+S ES+ PT+EDIKEI+IRRSKLAKWFMEPFF++LIVGC
Sbjct: 236 SHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELIVGC 295
Query: 1090 FVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAARWQMAM 911
FVRVGIG++R GPIYRLCVVRNVD SDP+R YKL+NKTT K+LNVVWGNEN+AARWQMAM
Sbjct: 296 FVRVGIGRSRSGPIYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENSAARWQMAM 355
Query: 910 ISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQMLQEKKS 731
ISDSPP ++E+DQWVREVER GGRMPSKQ+VLEKKEAIQK+N+FVYSA+TVKQMLQ+KKS
Sbjct: 356 ISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKS 415
Query: 730 ATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAVRLAEM 551
ATWRPLNVAAEKDRLRR+ME+AK KNDE EVERIKARLQELE SR+ E D KA RLAEM
Sbjct: 416 ATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELEDSRKVQEKDDKARRLAEM 475
Query: 550 NRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEXXXXXXXXX 383
NRKNRVENFKNAS L+ V+ A EAGYDPFSRRWTRS NY+ K +NGE
Sbjct: 476 NRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKGASNGEAAAAAALAA 535
Query: 382 XXXXXXXXDGTVGVSSKTGKXXXXXAEDGKLVDTRAPVDQGRESNMLHGFELEINLDPLE 203
G+++ T A GKLVDT APVDQG ESN LH F+L I+L L+
Sbjct: 536 EDNNGAGGTADGGMAA-TAAALQAAAGAGKLVDTNAPVDQGTESNTLHDFDLPISLAVLQ 594
Query: 202 NFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
FGG++G QAGFMARKQRIEATVGC VPENDGRRHALTL+VSDYK
Sbjct: 595 KFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLSVSDYK 639
>ref|XP_009799534.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nicotiana
sylvestris]
Length = 654
Score = 759 bits (1960), Expect = 0.0
Identities = 404/594 (68%), Positives = 467/594 (78%), Gaps = 22/594 (3%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEE-----DGY-HEGDSDDNSVGSDLYKDEDDRK 1622
NRK SGSQVPLKKRLDP ERD+D S+H E DGY E DSDD+S+GSDLYKDE+DR+
Sbjct: 56 NRKLSGSQVPLKKRLDPPERDDDRSSHGEGDDDGDGYGDERDSDDDSIGSDLYKDEEDRQ 115
Query: 1621 KLAQMSELQREMILADRASTRSDREMHEKFAKK-------RKGSPTQTHSRVVRSSTRFX 1463
KLAQMSEL REMIL DRAS +SDR + EK + K RK S +HSR +RSSTR
Sbjct: 116 KLAQMSELDREMILTDRASKKSDRSLQEKISGKIKNRSQPRKPSSPPSHSRGMRSSTRAL 175
Query: 1462 XXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGS-PT 1286
ALNEIRAKR RQQDPE + KLRDA R GSG RGYSPVKRR FTAA +GS PT
Sbjct: 176 DRAADRDDALNEIRAKRARQQDPEGNWKLRDAGRKGSGGRGYSPVKRRSFTAAALGSSPT 235
Query: 1285 QSGSVSHSDEEESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFED 1106
+ S S S+E +S+GD GM DSD++K S ES+ PT+EDIKEITIRRSKLAKWFMEPFF++
Sbjct: 236 RGESDSRSNEGDSSGDDGMDDSDDDK-SPESQLPTFEDIKEITIRRSKLAKWFMEPFFDE 294
Query: 1105 LIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAAR 926
LIVGCFVRVGIG++R GPIYRLC+VRNVD +DP+R YKL+NKTT+K+LN++WGN+++AAR
Sbjct: 295 LIVGCFVRVGIGRSRSGPIYRLCIVRNVDATDPNRQYKLENKTTFKFLNLIWGNDSSAAR 354
Query: 925 WQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQML 746
WQMAM+SDSPP ++E+DQWV+EVER GGRMPSKQ+VLEKKEAIQK+N+FVYSA+TVKQML
Sbjct: 355 WQMAMVSDSPPLRDEFDQWVKEVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQML 414
Query: 745 QEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAV 566
Q+KKSATWRPLNVAAEKDRLRREME+AK KNDE EVERIKARLQELEASR+A E D KA
Sbjct: 415 QQKKSATWRPLNVAAEKDRLRREMEVAKMKNDEAEVERIKARLQELEASRKAQEKDDKAR 474
Query: 565 RLAEMNRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEXXXX 398
RLAEMNRKNRVENFKNAS L+ V+ A EAGYDPFSRRWTRS NY+ K+ N
Sbjct: 475 RLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKSANEAAVGAS 534
Query: 397 XXXXXXXXXXXXXDGTVGVS----SKTGKXXXXXAEDGKLVDTRAPVDQGRESNMLHGFE 230
+G G++ + T A GKLVDT APVD G ESN LH F+
Sbjct: 535 NGEAAAALAVVDNNGAGGIADGGMAATAAALQAAAGAGKLVDTIAPVDLGTESNTLHDFD 594
Query: 229 LEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
L I+L L+ FGG +G+QAGF+ARKQRIEATVGCRVPENDGRRHALTL+VSDYK
Sbjct: 595 LPISLAVLQKFGGPQGSQAGFIARKQRIEATVGCRVPENDGRRHALTLSVSDYK 648
>ref|XP_009623037.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nicotiana
tomentosiformis]
Length = 654
Score = 758 bits (1958), Expect = 0.0
Identities = 404/594 (68%), Positives = 466/594 (78%), Gaps = 22/594 (3%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEE-----DGY-HEGDSDDNSVGSDLYKDEDDRK 1622
NRK SGSQVPLKKRLDP ERD+D S+H E DGY E DSDD+S+GSDLYKDE+DR+
Sbjct: 56 NRKLSGSQVPLKKRLDPPERDDDRSSHGEGDDDGDGYGDERDSDDDSIGSDLYKDEEDRQ 115
Query: 1621 KLAQMSELQREMILADRASTRSDREMHEKFAKK-------RKGSPTQTHSRVVRSSTRFX 1463
KLAQM+EL REMIL DRAS +SDR + EK + K RK S +HSR +RSSTR
Sbjct: 116 KLAQMTELDREMILTDRASKKSDRSLQEKISGKIKNRSQPRKPSSPPSHSRGMRSSTRAL 175
Query: 1462 XXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGS-PT 1286
ALNEIRAKR RQQDPE + KLRDA R GSG RGYSPVKRR FTAA +GS PT
Sbjct: 176 DRAADRDDALNEIRAKRARQQDPEGNWKLRDAGRKGSGGRGYSPVKRRSFTAAALGSSPT 235
Query: 1285 QSGSVSHSDEEESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFED 1106
+ S S S+E +S+GD GM DSD++K S ES+ PT+EDIKEITIRRSKLAKWFMEPFF++
Sbjct: 236 RGESDSRSNEGDSSGDDGMDDSDDDK-SPESQLPTFEDIKEITIRRSKLAKWFMEPFFDE 294
Query: 1105 LIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAAR 926
LIVGCFVRVGIG++R GPIYRLC+VRNVD +DP+R YKL+NKTT+K+LN+VWGN+++AAR
Sbjct: 295 LIVGCFVRVGIGRSRSGPIYRLCIVRNVDATDPNRQYKLENKTTFKFLNLVWGNDSSAAR 354
Query: 925 WQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQML 746
WQMAM+SDSPP ++E+DQWV+EVER GGRMPSKQ+VLEKKEAIQK+N+FVYSA+TVKQML
Sbjct: 355 WQMAMVSDSPPLRDEFDQWVKEVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQML 414
Query: 745 QEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAV 566
Q+KKSATWRPLNVAAEKDRLRREME+AK KNDE EVE+IKARLQELEASR+A E D KA
Sbjct: 415 QQKKSATWRPLNVAAEKDRLRREMEVAKMKNDEAEVEKIKARLQELEASRKAQEKDDKAR 474
Query: 565 RLAEMNRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEXXXX 398
RLAEMNRKNRVENFKNAS L+ V+ A EAGYDPFSRRWTRS NY+ K+ N
Sbjct: 475 RLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKSANEAAEGAS 534
Query: 397 XXXXXXXXXXXXXDGTVGVS----SKTGKXXXXXAEDGKLVDTRAPVDQGRESNMLHGFE 230
+G G++ T A GKLVDT APVD G ESN LH F+
Sbjct: 535 NGEAAAALAVVDNNGAGGIADGGMEATAAALQAAAGAGKLVDTIAPVDLGTESNTLHDFD 594
Query: 229 LEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
L I+L L+ FGG +G+QAGFMARKQRIEATVGCRVPENDGRRHALTL+VSDYK
Sbjct: 595 LPISLAVLQKFGGPQGSQAGFMARKQRIEATVGCRVPENDGRRHALTLSVSDYK 648
>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
tuberosum]
Length = 652
Score = 758 bits (1956), Expect = 0.0
Identities = 403/592 (68%), Positives = 465/592 (78%), Gaps = 21/592 (3%)
Frame = -2
Query: 1780 RKPSGSQVPLKKRLDPLERDEDDSNHEE----DGYHEGDSDDNSVGSDLYKDEDDRKKLA 1613
RK SGSQVPLKKRLDP ERD+D S+H E DGY +SDD+S+GSDLYKD+DDR+KLA
Sbjct: 57 RKLSGSQVPLKKRLDPQERDDDHSSHGEGNDGDGYGN-ESDDDSIGSDLYKDDDDRQKLA 115
Query: 1612 QMSELQREMILADRASTRSDREMHEKF----AKKRKGSPTQTHSRVVRSSTRFXXXXXXX 1445
QM+EL+REMIL DRA+ +SDR +H+K A+ RK S +HSR +RSSTR
Sbjct: 116 QMTELEREMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADR 175
Query: 1444 XXALNEIRAKRMRQQ-DPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGS-PTQSGSV 1271
ALNEIRAKR RQQ DPE KLRDA R GSG RGYSP+KRR FTAAT+GS PT+ S
Sbjct: 176 DDALNEIRAKRARQQQDPEGQFKLRDAARKGSGGRGYSPIKRRSFTAATLGSSPTRGESD 235
Query: 1270 SHSDEEESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFEDLIVGC 1091
SHS+E +S+ D GM DSD++K+S ES+ PT+EDIKEI+IRRSKLAKWFMEPFF++LIVGC
Sbjct: 236 SHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELIVGC 295
Query: 1090 FVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAARWQMAM 911
FVRVGIG++R GPIYRLCVVRNVD SDP+R YKL+NKTT K+LNVVWGNEN+AARWQMAM
Sbjct: 296 FVRVGIGRSRSGPIYRLCVVRNVDSSDPNRQYKLENKTTSKFLNVVWGNENSAARWQMAM 355
Query: 910 ISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQMLQEKKS 731
+SDSPP ++E+DQWVREVER GGRMPSKQ+VLEKKEAIQK+N+FVYSA+TVKQMLQ+KKS
Sbjct: 356 VSDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKS 415
Query: 730 ATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAVRLAEM 551
ATWRPLNVAAEKDRLRR+ME+AK KNDE EVERIKARLQEL+ SR+ E D KA RLAEM
Sbjct: 416 ATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELDDSRKVQEKDDKARRLAEM 475
Query: 550 NRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPN-------NGEXX 404
NRKNRVENFKNAS L+ V+ A +AGYDPFSRRWTRS NY+ K N NGE
Sbjct: 476 NRKNRVENFKNASELRPVNQLLKAGQAGYDPFSRRWTRSTNYFAKGANEEAEGASNGEVA 535
Query: 403 XXXXXXXXXXXXXXXDGTVGVSSKTGKXXXXXAEDGKLVDTRAPVDQGRESNMLHGFELE 224
G+++ T A GKLVDT APVDQG ESN LH F+L
Sbjct: 536 AAAALAAEDNNGASGTADGGMAA-TAAALQAAAGAGKLVDTNAPVDQGTESNTLHDFDLP 594
Query: 223 INLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
I+L L+ FGG++G QAGFMARKQRIEATVGC VPENDGRRHALTL+VSDYK
Sbjct: 595 ISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLSVSDYK 646
>ref|XP_011096256.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Sesamum
indicum]
Length = 627
Score = 750 bits (1937), Expect = 0.0
Identities = 411/616 (66%), Positives = 465/616 (75%), Gaps = 17/616 (2%)
Frame = -2
Query: 1864 RRRRKVPXXXXXXXXXXXXXXXXXXXSNRKPSGSQVPLKKRLDPLERDEDDSNHE---ED 1694
RRRRK NRKPSGSQVPLKKRLDP +RD+D S+ E +D
Sbjct: 29 RRRRKGSYSDDGSDSKNDDSDGDRAYPNRKPSGSQVPLKKRLDPADRDDDRSSQEGDEDD 88
Query: 1693 GY-HEGDSDDNSVGSDLYKDEDDRKKLAQMSELQREMILADRASTRSDREMHEKFAKK-- 1523
Y HE DSD++SVGSDLYKDEDDR+KL++++EL+REMIL RA+ RSDR++ EK K+
Sbjct: 89 DYDHERDSDNDSVGSDLYKDEDDREKLSKLTELEREMILEARATKRSDRDLTEKLKKRKG 148
Query: 1522 --RKGSPTQTHSRVVRSSTRFXXXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSG 1349
RKGSP + H+R +RS +A+R D E ++ RDA + GSG
Sbjct: 149 QDRKGSPPKAHTRNMRS------------------KAERAGALD-ELVKRRRDAAKGGSG 189
Query: 1348 TRGYSPVKRRPFTAATIGSPTQSGSVSHSDEEESTGDGGMADSDEEKTSAESKWPTYEDI 1169
+R YSPVKRR FTAAT+ SP++S S SHSD E STGDGGMADSD++KTS ESK PTYEDI
Sbjct: 190 SR-YSPVKRRSFTAATLSSPSRSESGSHSDGE-STGDGGMADSDDDKTS-ESKVPTYEDI 246
Query: 1168 KEITIRRSKLAKWFMEPFFEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKL 989
+EITIRRSKLAKWFMEPFF++LIVGCFVRVGIGK+R GPIYRLCVVRNVD +DPD+ YKL
Sbjct: 247 REITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDKQYKL 306
Query: 988 DNKTTYKYLNVVWGNENTAARWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEK 809
DNKTTYKYLNVVWGNE +AARWQMAMISDSPP KEE+DQWVREVER GG MP+KQEVLEK
Sbjct: 307 DNKTTYKYLNVVWGNETSAARWQMAMISDSPPTKEEFDQWVREVERSGGHMPTKQEVLEK 366
Query: 808 KEAIQKTNSFVYSAETVKQMLQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERI 629
KEAIQKTNSFVYSA TVKQMLQEKKSATWRPLNVAAEKDRLRR +E+AK+ DE EVER+
Sbjct: 367 KEAIQKTNSFVYSAATVKQMLQEKKSATWRPLNVAAEKDRLRRALEVAKENEDEAEVERL 426
Query: 628 KARLQELEASRQAHEMDKKAVRLAEMNRKNRVENFKNASGLKQVS----ASEAGYDPFSR 461
KARLQELEASRQ E D KAV+LAEMNR+NRVENF+NAS LK V+ A EAGYDPFSR
Sbjct: 427 KARLQELEASRQPQEKDSKAVKLAEMNRRNRVENFRNASELKPVNTSLKAGEAGYDPFSR 486
Query: 460 RWTRSRNYYVKNPNNGEXXXXXXXXXXXXXXXXXDG-----TVGVSSKTGKXXXXXAEDG 296
RWTRSRNYYV N N GE G GV++ T A G
Sbjct: 487 RWTRSRNYYVANSNGGEAAGETNGDASAALPGSNGGGRVSAEAGVAA-TAAALEAAAGAG 545
Query: 295 KLVDTRAPVDQGRESNMLHGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPE 116
KLVDT APVDQG ESNMLH FEL I+L L+ FGG +GAQAGFMARKQRIEAT+G +VPE
Sbjct: 546 KLVDTSAPVDQGTESNMLHNFELPISLAALQKFGGPQGAQAGFMARKQRIEATLGVKVPE 605
Query: 115 NDGRRHALTLTVSDYK 68
NDGRRHALTLTVSDYK
Sbjct: 606 NDGRRHALTLTVSDYK 621
>ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha
curcas] gi|643703874|gb|KDP20938.1| hypothetical protein
JCGZ_21409 [Jatropha curcas]
Length = 658
Score = 740 bits (1911), Expect = 0.0
Identities = 393/641 (61%), Positives = 469/641 (73%), Gaps = 35/641 (5%)
Frame = -2
Query: 1885 GRTGES---------ERRRRKVPXXXXXXXXXXXXXXXXXXXSNRKPSGSQVPLKKRLDP 1733
GRTG S RRRR+ ++RKPSGSQVPLKKRLDP
Sbjct: 13 GRTGSSGRNRNAHPPSRRRREGSYSDGGSDSRDEDSDDDRGYASRKPSGSQVPLKKRLDP 72
Query: 1732 LERDEDDSNHEEDGYHEG-------DSDDNSVGSDLYKDEDDRKKLAQMSELQREMILAD 1574
ERD+D + EE GY +G SD++ VG DLYKDEDDR+KLAQMSEL+REMIL++
Sbjct: 73 AERDDDQGSQEEGGYDDGASDREGDSSDESDVGDDLYKDEDDRRKLAQMSELEREMILSE 132
Query: 1573 RASTRSDREMHEKFAKKR---------KGSPTQTHSRVVRSSTRFXXXXXXXXXALNEIR 1421
RA + D+ + E+ KR K +P SR VR+S R ALNE+R
Sbjct: 133 RADKKGDKNLTERIRSKRDSERATRSRKETPPLPSSRGVRTSARSADRAAAKDDALNELR 192
Query: 1420 AKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGSPT-QSGSVSHSDEEEST 1244
AKR++QQDPEAHRKLRD +R SG+RG SPV+R+ FT+A++ S + +S S SHS++E ST
Sbjct: 193 AKRLKQQDPEAHRKLRDVSRGTSGSRGVSPVRRKRFTSASLSSSSSESDSRSHSEDEAST 252
Query: 1243 GDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFEDLIVGCFVRVGIGKN 1064
GDGGMADSDE++ S+ TY+DI+E+TIRRSKLAKW MEP+FE+LIVGCFVRVGIG++
Sbjct: 253 GDGGMADSDEDREPG-SEGLTYDDIREVTIRRSKLAKWLMEPWFEELIVGCFVRVGIGRS 311
Query: 1063 RYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAARWQMAMISDSPPAKE 884
+ GPIYRLC+VRNVD +DPDR YKL+NKTTYKYLNV+WGNE++AARWQMAM+SDS P ++
Sbjct: 312 KSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTED 371
Query: 883 EYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQMLQEKKSATWRPLNVA 704
EY QWVREVER GGRMP+KQ++LEKKEAI+K+N+FVYSA TVKQMLQEKKSA+ RPLNVA
Sbjct: 372 EYKQWVREVERSGGRMPTKQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVA 431
Query: 703 AEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAVRLAEMNRKNRVENF 524
AEKDRLRRE+E+A+ K D+ EVERI+AR+QELEASRQA E D KA+RLAEMNRKNR ENF
Sbjct: 432 AEKDRLRRELEVAQMKQDDAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENF 491
Query: 523 KNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEXXXXXXXXXXXXXXXXXD 356
+NAS LK V+ A EAGYDPFSRRWTRSRNYYV P +
Sbjct: 492 RNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSNG 551
Query: 355 GTVGVSSKTG-----KXXXXXAEDGKLVDTRAPVDQGRESNMLHGFELEINLDPLENFGG 191
G ++ G A+ GKLVDT APVDQG ESN LH F+L I+L LE FGG
Sbjct: 552 AATGTLAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHDFDLPISLTALEKFGG 611
Query: 190 AKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
AKGA+AGFMARKQ+IEATVGCRVPENDGRRHALTLTVSDYK
Sbjct: 612 AKGAKAGFMARKQQIEATVGCRVPENDGRRHALTLTVSDYK 652
>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
gi|590624750|ref|XP_007025692.1| PAF1 complex component
isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
PAF1 complex component isoform 1 [Theobroma cacao]
gi|508781058|gb|EOY28314.1| PAF1 complex component
isoform 1 [Theobroma cacao]
Length = 660
Score = 734 bits (1896), Expect = 0.0
Identities = 386/599 (64%), Positives = 455/599 (75%), Gaps = 27/599 (4%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEEDGY------HEGDSDDNS-VGSDLYKDEDDR 1625
+RKPSGSQVPLKKRLDP ERD+D + EE Y HEGDS D S VG DLYK+EDDR
Sbjct: 56 SRKPSGSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDR 115
Query: 1624 KKLAQMSELQREMILADRASTRSDREMHEKFAKKR---------KGSPTQTHSRVVRSST 1472
+KLAQM+EL+RE+IL++RA R D++ EK KR K +P SR VRSS
Sbjct: 116 RKLAQMTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSA 175
Query: 1471 RFXXXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGS 1292
R ALNE+RAKR++QQDPEAHRKLRDA+R SG+RG SPVKR+PFTA+++ S
Sbjct: 176 RSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSS 235
Query: 1291 PTQSGSVSHSDEEE--STGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEP 1118
+QS S S S+ E+ STGDGGM DSD+++ PT++DIKEITIRRSKLAKWFMEP
Sbjct: 236 SSQSDSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEP 295
Query: 1117 FFEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNEN 938
FFE+LIVGC+VRVGIG+++ GPIYRLC+VRNVD ++P+R YKL+NKTTYKYLNVVWGNE+
Sbjct: 296 FFEELIVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNES 355
Query: 937 TAARWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETV 758
+AARWQMAMISDSPP +EE+ Q +RE+ER GGRMPSKQ+VLEKKEA+QK +FVYSA TV
Sbjct: 356 SAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATV 415
Query: 757 KQMLQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMD 578
KQMLQEKKS + RPLN+AAEKDRLRR++EIA+ K+DE EVERIK RLQ+LEASRQA E D
Sbjct: 416 KQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKD 475
Query: 577 KKAVRLAEMNRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGE 410
KAVRLAEMNRKNR ENFKNAS LK V+ A EAGYDPFSRRWTRSRNYYV P +
Sbjct: 476 AKAVRLAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGAD 535
Query: 409 XXXXXXXXXXXXXXXXXDGTVGVSSKTGKXXXXXAED-----GKLVDTRAPVDQGRESNM 245
+++ G+ A GKLVDT APVD+G ESNM
Sbjct: 536 AAAVANGDRIGVIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTESNM 595
Query: 244 LHGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
LH FE+ I+L+ L+ FGG +GA AGFMARKQRIEATVGC+VPENDGRRHALTLTVSDYK
Sbjct: 596 LHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDYK 654
>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
gi|223541691|gb|EEF43239.1| RNA polymerase-associated
protein RTF1, putative [Ricinus communis]
Length = 660
Score = 731 bits (1887), Expect = 0.0
Identities = 396/651 (60%), Positives = 472/651 (72%), Gaps = 45/651 (6%)
Frame = -2
Query: 1885 GRTGES---------ERRRRKVPXXXXXXXXXXXXXXXXXXXSNRKPSGSQVPLKKRLDP 1733
GRTG S RRRR+ S+RKPSGSQVPLKKRLDP
Sbjct: 13 GRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPSGSQVPLKKRLDP 72
Query: 1732 LERDEDDSNHEEDGY------HEGDSDDNS-VGSDLYKDEDDRKKLAQMSELQREMILAD 1574
ERD+D + +E Y EGDS D S VG DLYK+EDDR+KLAQMSEL+REMIL++
Sbjct: 73 TERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQMSELEREMILSE 132
Query: 1573 RASTRSDREMHEKFAKKR---------KGSPTQTHSRVVRSSTRFXXXXXXXXXALNEIR 1421
RA + D+ + E+ KR K +P SR VR+S R ALNE++
Sbjct: 133 RADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADRAAAKDDALNELK 192
Query: 1420 AKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGSPT-QSGSVSHSDEEEST 1244
A+R++QQDPEAHRKLRDA+R GSG+RG+SP+KR+ FT+A++ S + +S S SHS++E ST
Sbjct: 193 ARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSSESESRSHSEDEGST 252
Query: 1243 GDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFEDLIVGCFVRVGIGKN 1064
GDGGMADSD++ S+ PT++DI+EITIRRSKLAKWFMEP+FE+LIVGCFVRVGIG++
Sbjct: 253 GDGGMADSDDDGEPG-SQGPTFDDIREITIRRSKLAKWFMEPWFEELIVGCFVRVGIGRS 311
Query: 1063 RYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAARWQMAMISDSPPAKE 884
+ GPIYRLC+VRNVD +DPDR YKL+NKTTYKYLNV+WGNE++AARWQMAMISDS P ++
Sbjct: 312 KSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDSAPTED 371
Query: 883 EYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQMLQEKKSATWRPLNVA 704
EY QWVREVER GGRMP+KQ++LEKKEAI+K+N+FVYSA TVKQMLQEKKSA+ RPLNVA
Sbjct: 372 EYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVA 431
Query: 703 AEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAVRLAEMNRKNRVENF 524
AEKDRLRRE+E+A+ K D+ EVERI+AR+QELEASRQ D KA+RLAEMNRKNR ENF
Sbjct: 432 AEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKDAKAIRLAEMNRKNRAENF 491
Query: 523 KNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEXXXXXXXXXXXXXXXXXD 356
+NAS LK V+ A EAGYDPFSRRWTRSRNYYV P G+
Sbjct: 492 RNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGD--------AAAATNNEAS 543
Query: 355 GTVGVSSKTGKXXXXXAE---------------DGKLVDTRAPVDQGRESNMLHGFELEI 221
GTV V++KT AE GKLVDT APVDQG ESN LH FEL I
Sbjct: 544 GTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHNFELPI 603
Query: 220 NLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
+L L+ FGGA+GAQAGFMARKQRIEAT+GCRV END +RH LTLTVSDYK
Sbjct: 604 SLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDYK 654
>ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Gossypium
raimondii] gi|763802543|gb|KJB69481.1| hypothetical
protein B456_011G025800 [Gossypium raimondii]
gi|763802544|gb|KJB69482.1| hypothetical protein
B456_011G025800 [Gossypium raimondii]
gi|763802545|gb|KJB69483.1| hypothetical protein
B456_011G025800 [Gossypium raimondii]
Length = 660
Score = 727 bits (1876), Expect = 0.0
Identities = 384/599 (64%), Positives = 454/599 (75%), Gaps = 27/599 (4%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEEDGYHEG-------DSDDNSVGSDLYKDEDDR 1625
+RKPSGSQVPLKKRLDP ERD+D + EE Y++ SD++ VG DLYK+E+DR
Sbjct: 56 SRKPSGSQVPLKKRLDPAERDDDQGSQEEGDYNDAGSGRERDSSDESDVGDDLYKNEEDR 115
Query: 1624 KKLAQMSELQREMILADRASTRSDREMHEKFAKKRKGS-PTQTH-------SRVVRSSTR 1469
++LAQ++EL+REMIL++RA R D++ EK KR+ P+++ SR VRSS R
Sbjct: 116 RQLAQLTELEREMILSERADKRGDKKFTEKIRSKRENDRPSRSQRETPPLPSRGVRSSAR 175
Query: 1468 FXXXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGSP 1289
ALNE+RAKR++QQDPEAHRKLRDA+R SG RG SPVKR+PFTA+++ S
Sbjct: 176 SADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGNRGLSPVKRKPFTASSLSSS 235
Query: 1288 TQSGSVSHSDEEE--STGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPF 1115
+QS S S S+ E+ STGDGGM DS++E+ + PT+ DIKEITIRRSKLAKW MEPF
Sbjct: 236 SQSESESRSNSEDEGSTGDGGMVDSEDERGTWGPNGPTFNDIKEITIRRSKLAKWLMEPF 295
Query: 1114 FEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENT 935
FE+LIVGCFVRVGIG+++ G IYRLC+VRNVD +DPDR YKL+NKTTYKYLNVVWGNE++
Sbjct: 296 FEELIVGCFVRVGIGRSKTGAIYRLCMVRNVDATDPDRTYKLENKTTYKYLNVVWGNESS 355
Query: 934 AARWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVK 755
AARWQMAMISDSPP +EE+ Q +REVER GGRMPSKQ+VLEKKEA+QK +FVYSA TVK
Sbjct: 356 AARWQMAMISDSPPLEEEFRQLIREVERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVK 415
Query: 754 QMLQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDK 575
QMLQEKKS++ RPLNVAAEKDRLRR++EIA+ K+D++EVERIK RLQ+LEASRQ+ E D
Sbjct: 416 QMLQEKKSSSSRPLNVAAEKDRLRRDLEIAQSKHDDVEVERIKKRLQQLEASRQSQEKDA 475
Query: 574 KAVRLAEMNRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEX 407
KAVRLAEMNRKNRVENFKNASGLK V+ A EAGYDPFSRRWTRSRNYY G+
Sbjct: 476 KAVRLAEMNRKNRVENFKNASGLKPVNTGLKAGEAGYDPFSRRWTRSRNYYNAKAPGGDA 535
Query: 406 XXXXXXXXXXXXXXXXDGTVGVS------SKTGKXXXXXAEDGKLVDTRAPVDQGRESNM 245
G + + T A GKLVDT APVD+G ESNM
Sbjct: 536 AAVANGDTNGAIGSGNGNDAGAAAAEAGRAATAAALQEAAGAGKLVDTNAPVDEGTESNM 595
Query: 244 LHGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
LH FEL I+LD L FGG +GA AGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK
Sbjct: 596 LHDFELPISLDVLRKFGGHEGAVAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 654
>ref|XP_011027887.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Populus
euphratica]
Length = 662
Score = 724 bits (1869), Expect = 0.0
Identities = 381/601 (63%), Positives = 453/601 (75%), Gaps = 29/601 (4%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEEDGY-------HEGDSDDNSVGSDLYKDEDDR 1625
NRKPSGSQVPLKKRL+ ERDE++ + +E Y G SD++ +G DLYKDEDDR
Sbjct: 57 NRKPSGSQVPLKKRLETNERDEEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDR 116
Query: 1624 KKLAQMSELQREMILADRASTRSDREMHEKFAKKR---------KGSPTQTHSRVVRSST 1472
KKLAQMSEL RE+ILADRA + D+ + EK KR K +P +R VRSS
Sbjct: 117 KKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSTRGVRSSA 176
Query: 1471 RFXXXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATI-G 1295
R ALNE+RAKR++QQDPEAHRKLRD +R +G+RG+S VK+ FT+A++
Sbjct: 177 RSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSS 236
Query: 1294 SPTQSGSVSHSDEEESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPF 1115
S ++SGS SHS++E STGDGGMADSDE+ S+ PTYEDIKEITIRR+KLAKWFMEP+
Sbjct: 237 SSSESGSRSHSEDEGSTGDGGMADSDED-VEPGSQGPTYEDIKEITIRRTKLAKWFMEPW 295
Query: 1114 FEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENT 935
FE+LI+GCFVRVGIG++R GP+YRLC+VRNVD ++PD+ YKL+NK+TYKYLNV WG + +
Sbjct: 296 FEELIIGCFVRVGIGRSRSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTS 355
Query: 934 AARWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVK 755
AARWQMAM+SDS P +EEY QWVREVE GGGR+PSKQ++LEKKEAI+K+N+FVYSA TVK
Sbjct: 356 AARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVK 415
Query: 754 QMLQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDK 575
QMLQEKKSA+ RPLNVAAEKDRLRRE+EIA+ K+DE EVERI AR++ELEASRQA D
Sbjct: 416 QMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRQAKVKDA 475
Query: 574 KAVRLAEMNRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEX 407
KA+RLAEMNRKNRVENF+NAS +K V+ A EAGYDPFSRRWTRSRNYYV P +
Sbjct: 476 KAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADD 535
Query: 406 XXXXXXXXXXXXXXXXDG---TVGVSSKTG-----KXXXXXAEDGKLVDTRAPVDQGRES 251
GV S+ G A+ GKLVDT APVDQG ES
Sbjct: 536 PDATKISEANEAVAVAASNQVVAGVMSEAGVAATAAALEAAADAGKLVDTSAPVDQGTES 595
Query: 250 NMLHGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDY 71
N +H FE+EI+L L+ FGG +GAQAGFMARKQRIEATVGCRVPENDGRRHALTLTV DY
Sbjct: 596 NTMHSFEIEISLTALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDY 655
Query: 70 K 68
K
Sbjct: 656 K 656
>ref|XP_010646904.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Vitis
vinifera]
Length = 658
Score = 723 bits (1867), Expect = 0.0
Identities = 389/598 (65%), Positives = 453/598 (75%), Gaps = 26/598 (4%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEE---DGY-HEGDS-DDNSVGSDLYKDEDDRKK 1619
+RKPSGSQVPLKKRLDP ERD+D + EE DG HEGDS DD+ VGSDLYK+EDDR++
Sbjct: 56 SRKPSGSQVPLKKRLDPTERDDDHGSPEEGDDDGSDHEGDSSDDSDVGSDLYKNEDDRQQ 115
Query: 1618 LAQMSELQREMILADRASTRSDREMHEKFAKKR--------KGSPTQTHSRVVRSSTRFX 1463
LAQ++EL+REMIL DRA+ ++D+++HEK KR K SP SR VRSS R
Sbjct: 116 LAQLTELEREMILTDRATKKTDKKLHEKLRSKRGKEKTQSRKESPPLQLSRGVRSSARSA 175
Query: 1462 XXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGSPTQ 1283
ALNE+RAKR++ QDPEAHRKLRDA+R GS RG+SPVKRR FTAA++ S +Q
Sbjct: 176 DRAAAKDDALNELRAKRLKHQDPEAHRKLRDASRGGSSNRGFSPVKRRAFTAASLSSSSQ 235
Query: 1282 SGSV--SHSDEEESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFE 1109
S S S S++E STGDG M DSD+++ S PT+EDIK ITIRRSKLAKWFMEPFFE
Sbjct: 236 SESDGGSRSEDEGSTGDGAMVDSDDDR-GIGSDVPTFEDIKSITIRRSKLAKWFMEPFFE 294
Query: 1108 DLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAA 929
+LIVGCFVRVGIGK+R GPIYRLC+VRNVD SDPDR Y+L+NKTTYKYLN VWGNEN++A
Sbjct: 295 ELIVGCFVRVGIGKSRSGPIYRLCMVRNVDASDPDRHYQLENKTTYKYLNCVWGNENSSA 354
Query: 928 RWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQM 749
RWQMAM+SDS P EE++QWV+EVER G RM +KQ++LEK+EAIQKTN FVYSA T KQM
Sbjct: 355 RWQMAMVSDSGPLMEEFNQWVKEVERSGSRMLTKQDILEKREAIQKTNMFVYSAATGKQM 414
Query: 748 LQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKA 569
LQEKKS + RPLN+ AEKDRLRREME+A K+D+ EVERI RLQ+LEASR++ E D KA
Sbjct: 415 LQEKKSVSSRPLNIVAEKDRLRREMEVALSKHDQAEVERINTRLQQLEASRRSKEKDAKA 474
Query: 568 VRLAEMNRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGE--X 407
+RLAEMNRKNR ENFKNAS K+V+ A EAGYDPFSRRWTRSRNYYV P G+
Sbjct: 475 IRLAEMNRKNRAENFKNASESKRVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGGDEAA 534
Query: 406 XXXXXXXXXXXXXXXXDGTVGVSSKTG-----KXXXXXAEDGKLVDTRAPVDQGRESNML 242
+GT G ++ G A+ GKLVDT APVDQG ESN L
Sbjct: 535 AVANGEAPAAFVGAGSNGTGGKGAEVGVAATAAALEAAADAGKLVDTSAPVDQGTESNTL 594
Query: 241 HGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
H FEL I+L L+ FGG +GA AGFMARKQRIEATVGCRVPENDGRRHALTLTV DYK
Sbjct: 595 HDFELPISLAGLQKFGGPQGALAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDYK 652
>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
gi|222848649|gb|EEE86196.1| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 662
Score = 721 bits (1861), Expect = 0.0
Identities = 381/601 (63%), Positives = 451/601 (75%), Gaps = 29/601 (4%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEEDGY-------HEGDSDDNSVGSDLYKDEDDR 1625
NRKPSGSQVPLKKRL+ ERD ++ + +E Y G SD++ +G DLYKDEDDR
Sbjct: 57 NRKPSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDR 116
Query: 1624 KKLAQMSELQREMILADRASTRSDREMHEKFAKKR---------KGSPTQTHSRVVRSST 1472
KKLAQMSEL RE+ILADRA + D+ + EK KR K +P SR VRSS
Sbjct: 117 KKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSA 176
Query: 1471 RFXXXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATI-G 1295
R ALNE+RAKR++QQDPEAHRKLRD +R +G+RG+S VK+ FT+A++
Sbjct: 177 RSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSS 236
Query: 1294 SPTQSGSVSHSDEEESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPF 1115
S ++SGS SHS++E STGDGGMADSDE+ SK PTYEDIKEITIRR+KLAKWFMEP+
Sbjct: 237 SSSESGSRSHSEDEGSTGDGGMADSDED-VEPGSKGPTYEDIKEITIRRTKLAKWFMEPW 295
Query: 1114 FEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENT 935
FE+LI+GCFVRVGIG+++ GP+YRLC+VRNVD ++PD+ YKL+NK+TYKYLNV WG + +
Sbjct: 296 FEELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTS 355
Query: 934 AARWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVK 755
AARWQMAM+SDS P +EEY QWVREVE GGGR+PSKQ++LEKKEAI+K+N+FVYSA TVK
Sbjct: 356 AARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVK 415
Query: 754 QMLQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDK 575
QMLQEKKSA+ RPLNVAAEKDRLRRE+EIA+ K+DE EVERI AR++ELEASR A D
Sbjct: 416 QMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKDA 475
Query: 574 KAVRLAEMNRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEX 407
KA+RLAEMNRKNRVENF+NAS +K V+ A EAGYDPFSRRWTRSRNYYV P +
Sbjct: 476 KAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADD 535
Query: 406 XXXXXXXXXXXXXXXXDG---TVGVSSKTG-----KXXXXXAEDGKLVDTRAPVDQGRES 251
GV S+ G A+ GKLVDT APVDQG ES
Sbjct: 536 PVATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGTES 595
Query: 250 NMLHGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDY 71
N +H FELEI+L L+ FGG +GAQAGFMARKQRIEATVGCRVPENDGRRHALTLTV DY
Sbjct: 596 NTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDY 655
Query: 70 K 68
K
Sbjct: 656 K 656
>ref|XP_008453742.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
melo] gi|659107574|ref|XP_008453743.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog [Cucumis melo]
Length = 660
Score = 719 bits (1855), Expect = 0.0
Identities = 389/600 (64%), Positives = 447/600 (74%), Gaps = 28/600 (4%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEED------GYHEGDSDDNS-VGSDLYKDEDDR 1625
+RKPSGSQVPLKKRLDP ERD+D + EE HEGDS D S VG DLYKD+DDR
Sbjct: 56 SRKPSGSQVPLKKRLDPTERDDDGGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDR 115
Query: 1624 KKLAQMSELQREMILADRASTRSDREMHE---------KFAKKRKGSPTQTHSRVVRSST 1472
+KLA MSELQREMIL+DRAS ++D+ ++E K A RK +P SR+ RSS
Sbjct: 116 RKLAGMSELQREMILSDRASKKNDKHLYESLRAKMDKGKTAPSRKETPPLPSSRI-RSSA 174
Query: 1471 RFXXXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGS 1292
R ALNE+RAKR++QQDPEAHRKLRDA+R S R +SP KR+PFTA ++ S
Sbjct: 175 RSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNSNNRRFSPTKRKPFTAPSLSS 234
Query: 1291 PTQSGSVSH--SDEEESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEP 1118
+QS S S SD+E STGDGGM DSD+E++ S PT+EDIKEITIRRSKLAKW MEP
Sbjct: 235 SSQSESESRFQSDDEGSTGDGGMIDSDDERSMPGSDGPTFEDIKEITIRRSKLAKWLMEP 294
Query: 1117 FFEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNEN 938
FFE+LIVGCFVRVGIG++R GPIYRLC+VRNVD ++PDR YKL+NK T+KYLNV+WGNEN
Sbjct: 295 FFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEN 354
Query: 937 TAARWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETV 758
+AARWQMAM+SDS P ++EY QWV+EVER GGRM SKQ+VLEKK+AIQK N+FVYSA TV
Sbjct: 355 SAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDVLEKKDAIQKVNNFVYSAATV 414
Query: 757 KQMLQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMD 578
KQMLQ+KKSA+ RPLN+AAEKDRLRREM++A KNDE EVERIK RLQ+LEASR+ D
Sbjct: 415 KQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKGRLQQLEASRRLQMKD 474
Query: 577 KKAVRLAEMNRKNRVENFKNAS---GLKQVSASEAGYDPFSRRWTRSRNYYVKN---PNN 416
KA+RLAEMNRKNRVENFKNAS LK + A EAGYDPFSRRWTRSRNYYV N N
Sbjct: 475 AKAIRLAEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANG 534
Query: 415 GEXXXXXXXXXXXXXXXXXDGTVGVS----SKTGKXXXXXAEDGKLVDTRAPVDQGRESN 248
G G S + T A GKLVDT APVD G ESN
Sbjct: 535 AAEAAGNSDTVTPALESTRTGAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESN 594
Query: 247 MLHGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
LH FEL I+L L+ FGGA GAQAGF+ARKQRIEATVG +VPENDGRRHALTLTVSDYK
Sbjct: 595 SLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYK 654
>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
sativus] gi|778690563|ref|XP_011653135.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog [Cucumis
sativus] gi|700198089|gb|KGN53247.1| hypothetical protein
Csa_4G038650 [Cucumis sativus]
Length = 660
Score = 713 bits (1840), Expect = 0.0
Identities = 385/600 (64%), Positives = 447/600 (74%), Gaps = 28/600 (4%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEED------GYHEGDSDDNS-VGSDLYKDEDDR 1625
+RKPSGSQVPLKKRLDP ERD+D + EE EGDS D S VG DLYKD+DDR
Sbjct: 56 SRKPSGSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDR 115
Query: 1624 KKLAQMSELQREMILADRASTRSDREMHE---------KFAKKRKGSPTQTHSRVVRSST 1472
+KLA MSELQREMIL+DRAS ++D+ ++E K A RK +P SR+ RSS
Sbjct: 116 RKLAGMSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRI-RSSA 174
Query: 1471 RFXXXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGS 1292
R ALNE+RAKR++QQDPEAHRKLRDA+R + +R +SP KR+PFTA ++ S
Sbjct: 175 RSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSS 234
Query: 1291 PTQSGSVSH--SDEEESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEP 1118
+QS S S SD+E STGDGGM DSD+E++ S PT+EDIKE+TIRRSKLAKW MEP
Sbjct: 235 SSQSESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEP 294
Query: 1117 FFEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNEN 938
FFE+LIVGCFVRVGIG++R GPIYRLC+VRNVD ++PDR YKL+NK T+KYLNV+WGNE
Sbjct: 295 FFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEA 354
Query: 937 TAARWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETV 758
+AARWQMAM+SDS P ++EY QWV+EVER GGRM SKQ++LEKKEAIQK N+FVYSA TV
Sbjct: 355 SAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATV 414
Query: 757 KQMLQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMD 578
KQMLQ+KKSA+ RPLN+AAEKDRLRREM++A KNDE EVERIK RLQ+LEASR+ D
Sbjct: 415 KQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKD 474
Query: 577 KKAVRLAEMNRKNRVENFKNAS---GLKQVSASEAGYDPFSRRWTRSRNYYVKNPN--NG 413
KA+RLAEMNRKNRVENFKNAS LK + A EAGYDPFSRRWTRSRNYYV N NG
Sbjct: 475 AKAIRLAEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANG 534
Query: 412 EXXXXXXXXXXXXXXXXXDGTVGVSSKTGKXXXXXAED-----GKLVDTRAPVDQGRESN 248
G +S G A + GKLVDT APVD G ESN
Sbjct: 535 AAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESN 594
Query: 247 MLHGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
LH FEL I+L L+ FGGA GAQAGF+ARKQRIEATVG +VPENDGRRHALTLTVSDYK
Sbjct: 595 SLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYK 654
>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
gi|550327599|gb|EEE97240.2| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 664
Score = 712 bits (1837), Expect = 0.0
Identities = 385/647 (59%), Positives = 462/647 (71%), Gaps = 41/647 (6%)
Frame = -2
Query: 1885 GRTGESERRRRKVPXXXXXXXXXXXXXXXXXXXSN----------RKPSGSQVPLKKRLD 1736
GRTG+S R R +P + RKPSGSQVPLKKRL+
Sbjct: 13 GRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKPSGSQVPLKKRLE 72
Query: 1735 PLERDEDDSNHEEDGYHEG-------DSDDNSVGSDLYKDEDDRKKLAQMSELQREMILA 1577
ERD++ + EE Y +G SD + +G DLYKDEDDR+KLAQMSEL RE+ILA
Sbjct: 73 TNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLAQMSELDRELILA 132
Query: 1576 DRASTRSDREMHEKFAKKR---------KGSPTQTHSRVVRSSTRFXXXXXXXXXALNEI 1424
DRA + D+ + EK KR K +P SR VRSS R ALNE+
Sbjct: 133 DRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSADRAAAKDDALNEL 192
Query: 1423 RAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGSPT---QSGSVSHSDEE 1253
RAKR++QQDPEAHRKLRDA+R +G+RG++ VK+ FT+A + S + +SGS SHS++E
Sbjct: 193 RAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSSSESESGSRSHSEDE 252
Query: 1252 ESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFEDLIVGCFVRVGI 1073
STGDGGMADSDE+ S+ PTYEDIKEITIRR+KLAKWFMEP+FE+LI+GCFVRVGI
Sbjct: 253 GSTGDGGMADSDEDGDPG-SRGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRVGI 311
Query: 1072 GKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAARWQMAMISDSPP 893
G+++ GP+YRLC+VRNVD ++PD+ YKL+NK+TYKYLNV WG +++AARWQMAM+SDS P
Sbjct: 312 GRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSAARWQMAMVSDSAP 371
Query: 892 AKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQMLQEKKSATWRPL 713
+EEY QWVRE ERGGGR+PSKQ++LEKKEAI+K+N+FVYSA TVKQMLQEKKSA+ RPL
Sbjct: 372 TEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPL 431
Query: 712 NVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAVRLAEMNRKNRV 533
NVAAEKDRLRRE+EIA+ ++DE EVERI+AR+ ELEASRQA D KA+RLAEMNRKNRV
Sbjct: 432 NVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKDAKALRLAEMNRKNRV 491
Query: 532 ENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEXXXXXXXXXXXXXXX 365
ENF+NAS LK ++ A EAGYDPFSRRWTRSRNYYV NP G+
Sbjct: 492 ENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGDDAVAASNSEANDTAA 551
Query: 364 XXDG---TVGVSSKTGKXXXXXAED-----GKLVDTRAPVDQGRESNMLHGFELEINLDP 209
D G S++G A D GKLVDT APVDQG ESN +H FELEI+L
Sbjct: 552 VADSDHVVAGAMSESGVAATAAALDAAADAGKLVDTSAPVDQGTESNTMHNFELEISLIA 611
Query: 208 LENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
L+ F G +GA AGFMARKQRIEA VGC+V ENDGRRHALTLTV DYK
Sbjct: 612 LQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTVGDYK 658
>ref|XP_011047833.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X2
[Populus euphratica] gi|743908750|ref|XP_011047834.1|
PREDICTED: RNA polymerase-associated protein RTF1 homolog
isoform X2 [Populus euphratica]
gi|743908752|ref|XP_011047836.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog isoform X2
[Populus euphratica]
Length = 666
Score = 711 bits (1835), Expect = 0.0
Identities = 388/648 (59%), Positives = 464/648 (71%), Gaps = 42/648 (6%)
Frame = -2
Query: 1885 GRTGESERRRRKVPXXXXXXXXXXXXXXXXXXXSN----------RKPSGSQVPLKKRLD 1736
GRTG+S R R +P + RKPSGSQVPLKKRL+
Sbjct: 15 GRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKPSGSQVPLKKRLE 74
Query: 1735 PLERDEDDSNHEE----DG--YHEGDSDDNS-VGSDLYKDEDDRKKLAQMSELQREMILA 1577
ERD++ EE DG Y EG+S D S +G DLYKDEDDR+KLAQMSEL RE+ILA
Sbjct: 75 TNERDDEGGGQEEGDYDDGGSYREGESSDASDIGDDLYKDEDDRQKLAQMSELDRELILA 134
Query: 1576 DRASTRSDREMHEKFAKKR---------KGSPTQTHSRVVRSSTRFXXXXXXXXXALNEI 1424
DRA + D+ + EK KR K +P R VRSS R ALNE+
Sbjct: 135 DRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSLRGVRSSARSADRAAAKDDALNEL 194
Query: 1423 RAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGSPT---QSGSVSHSDEE 1253
RAKR++QQDPEAHRKLRDA+R +G+RG++ VK+ FT+A + S + +SGS SHS++E
Sbjct: 195 RAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSSSESESGSRSHSEDE 254
Query: 1252 ESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFEDLIVGCFVRVGI 1073
STGDGGMADSDE+ S+ PTYEDIKEITIRR+KLAKWFMEP+FE+LI+GCFVRVGI
Sbjct: 255 GSTGDGGMADSDEDGDPG-SQGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRVGI 313
Query: 1072 GKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAARWQMAMISDSPP 893
G+++ GP+YRLC+VRNVD ++PD+ YKL+NK+T+KYLNV WG +++AARWQMAM+SDS P
Sbjct: 314 GRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTFKYLNVTWGADSSAARWQMAMVSDSAP 373
Query: 892 AKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQMLQEKKSATWRPL 713
+EEY QWVRE ERGGGR+PSKQ++LEKKEAI+K+N+FVYSA TVKQMLQEKKSA+ RPL
Sbjct: 374 TEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPL 433
Query: 712 NVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAVRLAEMNRKNRV 533
NVAAEKDRLRRE+EIA+ K+DE EVERI+AR+ ELEASRQA D KA+RLAEMNRKNRV
Sbjct: 434 NVAAEKDRLRRELEIAQSKHDEAEVERIEARILELEASRQAKVKDAKAIRLAEMNRKNRV 493
Query: 532 ENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNP---------NNGEXXXXXX 392
ENF+NAS LK ++ A EAGYDPFSRRWTRSRNYYV NP +N E
Sbjct: 494 ENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGADAAAASNSEANDTAA 553
Query: 391 XXXXXXXXXXXDGTVGVSSKTGKXXXXXAEDGKLVDTRAPVDQGRESNMLHGFELEINLD 212
GV++ T A+ GKLVDT APVDQG ESN +H FELEI+L
Sbjct: 554 VADSHHVVAGAMSVSGVAA-TAAALDAAADAGKLVDTSAPVDQGTESNTMHNFELEISLI 612
Query: 211 PLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
L+ F G +GA AGFMARKQRIEATVGC+V ENDGRRHALTLTV DYK
Sbjct: 613 ALQKFRGPQGAHAGFMARKQRIEATVGCQVRENDGRRHALTLTVGDYK 660
>ref|XP_011047832.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Populus euphratica]
Length = 695
Score = 711 bits (1835), Expect = 0.0
Identities = 388/648 (59%), Positives = 464/648 (71%), Gaps = 42/648 (6%)
Frame = -2
Query: 1885 GRTGESERRRRKVPXXXXXXXXXXXXXXXXXXXSN----------RKPSGSQVPLKKRLD 1736
GRTG+S R R +P + RKPSGSQVPLKKRL+
Sbjct: 44 GRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKPSGSQVPLKKRLE 103
Query: 1735 PLERDEDDSNHEE----DG--YHEGDSDDNS-VGSDLYKDEDDRKKLAQMSELQREMILA 1577
ERD++ EE DG Y EG+S D S +G DLYKDEDDR+KLAQMSEL RE+ILA
Sbjct: 104 TNERDDEGGGQEEGDYDDGGSYREGESSDASDIGDDLYKDEDDRQKLAQMSELDRELILA 163
Query: 1576 DRASTRSDREMHEKFAKKR---------KGSPTQTHSRVVRSSTRFXXXXXXXXXALNEI 1424
DRA + D+ + EK KR K +P R VRSS R ALNE+
Sbjct: 164 DRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSLRGVRSSARSADRAAAKDDALNEL 223
Query: 1423 RAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGSPT---QSGSVSHSDEE 1253
RAKR++QQDPEAHRKLRDA+R +G+RG++ VK+ FT+A + S + +SGS SHS++E
Sbjct: 224 RAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSSSESESGSRSHSEDE 283
Query: 1252 ESTGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFEDLIVGCFVRVGI 1073
STGDGGMADSDE+ S+ PTYEDIKEITIRR+KLAKWFMEP+FE+LI+GCFVRVGI
Sbjct: 284 GSTGDGGMADSDEDGDPG-SQGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRVGI 342
Query: 1072 GKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAARWQMAMISDSPP 893
G+++ GP+YRLC+VRNVD ++PD+ YKL+NK+T+KYLNV WG +++AARWQMAM+SDS P
Sbjct: 343 GRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTFKYLNVTWGADSSAARWQMAMVSDSAP 402
Query: 892 AKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQMLQEKKSATWRPL 713
+EEY QWVRE ERGGGR+PSKQ++LEKKEAI+K+N+FVYSA TVKQMLQEKKSA+ RPL
Sbjct: 403 TEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPL 462
Query: 712 NVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAVRLAEMNRKNRV 533
NVAAEKDRLRRE+EIA+ K+DE EVERI+AR+ ELEASRQA D KA+RLAEMNRKNRV
Sbjct: 463 NVAAEKDRLRRELEIAQSKHDEAEVERIEARILELEASRQAKVKDAKAIRLAEMNRKNRV 522
Query: 532 ENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNP---------NNGEXXXXXX 392
ENF+NAS LK ++ A EAGYDPFSRRWTRSRNYYV NP +N E
Sbjct: 523 ENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGADAAAASNSEANDTAA 582
Query: 391 XXXXXXXXXXXDGTVGVSSKTGKXXXXXAEDGKLVDTRAPVDQGRESNMLHGFELEINLD 212
GV++ T A+ GKLVDT APVDQG ESN +H FELEI+L
Sbjct: 583 VADSHHVVAGAMSVSGVAA-TAAALDAAADAGKLVDTSAPVDQGTESNTMHNFELEISLI 641
Query: 211 PLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
L+ F G +GA AGFMARKQRIEATVGC+V ENDGRRHALTLTV DYK
Sbjct: 642 ALQKFRGPQGAHAGFMARKQRIEATVGCQVRENDGRRHALTLTVGDYK 689
>ref|XP_010100559.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
gi|587894274|gb|EXB82802.1| RNA polymerase-associated
protein RTF1-like protein [Morus notabilis]
Length = 658
Score = 709 bits (1829), Expect = 0.0
Identities = 379/598 (63%), Positives = 446/598 (74%), Gaps = 26/598 (4%)
Frame = -2
Query: 1783 NRKPSGSQVPLKKRLDPLERDEDDSNHEED-----GYHEGDSDDNSVGSDLYKDEDDRKK 1619
NRKPSGSQVPLKKRLDP E D+D + EE EGDS+ + VGSDLYKD+DDR+K
Sbjct: 56 NRKPSGSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSESD-VGSDLYKDDDDRRK 114
Query: 1618 LAQMSELQREMILADRASTRSDREMHEKFAKK--RKGSPTQTHSRV------VRSSTRFX 1463
LA+M+ELQREMIL DRAS + D+ + EK K KG TQ+ VRSS R
Sbjct: 115 LAEMTELQREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKETPLPSSRVRSSARSA 174
Query: 1462 XXXXXXXXALNEIRAKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGSPTQ 1283
ALNE+RAKR++QQDPEAH KLRDA+R GSG+R KR+ +TA ++ S +Q
Sbjct: 175 DRAAAKDDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQ 234
Query: 1282 SGSVSHSDEEE--STGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFE 1109
S S S S E+ STGDGGM DSD+E+ S+ T++DIKE+T+RRSKLAKW MEPFFE
Sbjct: 235 SDSESESQSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFE 294
Query: 1108 DLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAA 929
+LIVGCFVRVGIG+++ GPIYRLC+VRNVD S+PDR YKLDNK T+KYLNVVWGNEN+AA
Sbjct: 295 ELIVGCFVRVGIGRSKSGPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAA 354
Query: 928 RWQMAMISDSPPAKEEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQM 749
RWQMAM+SDS P +EE+ QWVREVER GGRMP+K ++L+KKE+I+K N+FVYSA TVKQM
Sbjct: 355 RWQMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQM 414
Query: 748 LQEKKSATWRPLNVAAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKA 569
LQEKKSA+ RPLN+A EKDRLRRE+E+A+ KNDE+EV+RIK RLQELEASR+A + D KA
Sbjct: 415 LQEKKSASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAKA 474
Query: 568 VRLAEMNRKNRVENFKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNN-GEXX 404
+RLAEMNRKNRVENFKNAS LK V+ A EAGYDPFSRRWTRSRNYYV P E
Sbjct: 475 IRLAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVKEDS 534
Query: 403 XXXXXXXXXXXXXXXDGTVGVSSK------TGKXXXXXAEDGKLVDTRAPVDQGRESNML 242
+G G+ + T A+ GKLVDT APVDQG SNML
Sbjct: 535 GANAGNNGASTDAENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVSNML 594
Query: 241 HGFELEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
H FEL I+L L+ FGG +GAQAGFMARKQRIEATVGCRVPENDGRRHALTL+V DYK
Sbjct: 595 HNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLSVGDYK 652
>ref|XP_014509564.1| PREDICTED: protein RTF1 homolog [Vigna radiata var. radiata]
gi|951010508|ref|XP_014509566.1| PREDICTED: protein RTF1
homolog [Vigna radiata var. radiata]
Length = 657
Score = 708 bits (1827), Expect = 0.0
Identities = 388/642 (60%), Positives = 469/642 (73%), Gaps = 36/642 (5%)
Frame = -2
Query: 1885 GRTGESERRRRKVPXXXXXXXXXXXXXXXXXXXSN---------RKPSGSQVPLKKRLDP 1733
GRTG S R R +P + RKPSGSQVPLKKRLDP
Sbjct: 13 GRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSGSQVPLKKRLDP 72
Query: 1732 LERDEDDSNHEE----DGY--HEGDSDDNS-VGSDLYKDEDDRKKLAQMSELQREMILAD 1574
ERD+D + E+ DG H+GDS D S +G DLYKDEDDR+KL++M+ELQREMIL+D
Sbjct: 73 SERDDDLGSQEDADDDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSD 132
Query: 1573 RASTRSDREMHEKFAKKR---------KGSPTQTHSRVVRSSTRFXXXXXXXXXALNEIR 1421
RA+ + D+ + K A KR K SP + SR+ R+S R ALNE+R
Sbjct: 133 RATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSRM-RASAR-SADRSAKNDALNELR 190
Query: 1420 AKRMRQQDPEAHRKLRDATRDGSGTRGYSPVKRRPFTAATIGSPT--QSGSVSHSDEEES 1247
AKR++QQDPEAHRKLR+A+R+ +G R +SP KR+PFT+ ++ S + +S S SHSD+E S
Sbjct: 191 AKRLKQQDPEAHRKLREASRN-AGPRHFSPPKRKPFTSTSLSSSSHSESESRSHSDDEGS 249
Query: 1246 TGDGGMADSDEEKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFEDLIVGCFVRVGIGK 1067
TGDGG+ DSD+++ A S+ P+++DIKEITIRRSKLAKWFMEPFFE+LIVGCFVRVGIG+
Sbjct: 250 TGDGGIGDSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGR 309
Query: 1066 NRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENTAARWQMAMISDSPPAK 887
++ PIYRLC+V+NVD S+PDR YKL+NKTTYKYLNVVWGNE++AARWQMAM+SDS P +
Sbjct: 310 SKTAPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSVPLE 369
Query: 886 EEYDQWVREVERGGGRMPSKQEVLEKKEAIQKTNSFVYSAETVKQMLQEKKSATWRPLNV 707
EE+ QWV+EV+R GGRMP+KQ+VLEKK+AIQK +FVYSA TVKQMLQEKKSA+ RPLNV
Sbjct: 370 EEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNV 429
Query: 706 AAEKDRLRREMEIAKDKNDELEVERIKARLQELEASRQAHEMDKKAVRLAEMNRKNRVEN 527
AAEKDRLRRE+EIA+ K+D+ EVERI+ARLQELEASRQA + D KA++LAEMNRKNR EN
Sbjct: 430 AAEKDRLRRELEIAQSKHDDAEVERIRARLQELEASRQAKQKDAKALKLAEMNRKNRFEN 489
Query: 526 FKNASGLKQVS----ASEAGYDPFSRRWTRSRNYYVKNPNNGEXXXXXXXXXXXXXXXXX 359
FKNAS LK V+ A EAGYDPFSRRWTRSRNYY P
Sbjct: 490 FKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVNGVVVGPGSN 549
Query: 358 DGTVGVSSKTG-----KXXXXXAEDGKLVDTRAPVDQGRESNMLHGFELEINLDPLENFG 194
V V+++ G A+ GKLVDT APVDQG ESNMLH FEL I+L L+ +G
Sbjct: 550 SAGVPVTAEAGMVATAAALEAAADAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYG 609
Query: 193 GAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYK 68
GA+GAQAGFMARKQRIEATVG RV ENDGRRH+LTL+VSDYK
Sbjct: 610 GAQGAQAGFMARKQRIEATVGFRVSENDGRRHSLTLSVSDYK 651