BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00004723
         (3382 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP05599.1| unnamed protein product [Coffea canephora]           1808   0.0  
emb|CDP05596.1| unnamed protein product [Coffea canephora]           1751   0.0  
emb|CDP05598.1| unnamed protein product [Coffea canephora]           1566   0.0  
ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polyme...  1481   0.0  
ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polyme...  1452   0.0  
ref|XP_009623376.1| PREDICTED: probable RNA-dependent RNA polyme...  1434   0.0  
ref|XP_009781107.1| PREDICTED: probable RNA-dependent RNA polyme...  1429   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1428   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1428   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1421   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...  1419   0.0  
ref|XP_012847562.1| PREDICTED: probable RNA-dependent RNA polyme...  1417   0.0  
ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1415   0.0  
ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1414   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1413   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1413   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1410   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1406   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1401   0.0  
ref|XP_002281315.1| PREDICTED: probable RNA-dependent RNA polyme...  1398   0.0  

>emb|CDP05599.1| unnamed protein product [Coffea canephora]
          Length = 1113

 Score = 1808 bits (4683), Expect = 0.0
 Identities = 880/1003 (87%), Positives = 934/1003 (93%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            L YGSSYL+A + +SDLVPRPR YEH M+QIVLNFGCQVSEN FSVL NV NVSVRFGIG
Sbjct: 69   LNYGSSYLRAWEMDSDLVPRPRTYEHHMEQIVLNFGCQVSENRFSVLCNVPNVSVRFGIG 128

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRRGQAAKFLLIQLFGAPRVFEKLEESTFSY 3021
            M+KMYFIL F S +YKLEL  ENLWQIVLHRRGQAAKFLLIQL GAPRVF+KLEESTFSY
Sbjct: 129  MRKMYFILHFRSCDYKLELSDENLWQIVLHRRGQAAKFLLIQLLGAPRVFQKLEESTFSY 188

Query: 3020 FKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGSP 2841
            F+ETPD++W+RTTDFTSSCIGQSSGICLKLP GIKLPNLRDYFPWYKESD QFTLETGSP
Sbjct: 189  FQETPDDRWLRTTDFTSSCIGQSSGICLKLPRGIKLPNLRDYFPWYKESDSQFTLETGSP 248

Query: 2840 YSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIRYIE 2661
            YSYNL LAPIL PPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDP+RR IRYIE
Sbjct: 249  YSYNLVLAPILHPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPQRRDIRYIE 308

Query: 2660 HALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCKVYF 2481
            HALENLY   +CCY+PVQWLKEQY+KYDKL QLP SPTLTL+ GLVYVRRVQVTPCKVYF
Sbjct: 309  HALENLYILNDCCYEPVQWLKEQYDKYDKLLQLPISPTLTLEGGLVYVRRVQVTPCKVYF 368

Query: 2480 CGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKRILS 2301
            CGPEVNVSNRVLRHFSEDI NFLRVSFIDEE NK+FATDLSPRIAAN N+RTKIY+RILS
Sbjct: 369  CGPEVNVSNRVLRHFSEDIGNFLRVSFIDEEGNKMFATDLSPRIAANVNQRTKIYERILS 428

Query: 2300 TLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKYAA 2121
            TLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKYAA
Sbjct: 429  TLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKYAA 488

Query: 2120 RLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAKKCG 1941
            RLGQSFSSSTETLNVG HEIEMIPD+E+RGG+FGASKYVFSDGIGKISAQFAR+VA+KCG
Sbjct: 489  RLGQSFSSSTETLNVGTHEIEMIPDIEVRGGYFGASKYVFSDGIGKISAQFARQVARKCG 548

Query: 1940 LTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPCFLN 1761
              T TPSAFQIRYGGFKGVVAVDPT            KYES+NTKLDVLAWSKYQPCFLN
Sbjct: 549  FITSTPSAFQIRYGGFKGVVAVDPTSSKKLSLRQSMKKYESNNTKLDVLAWSKYQPCFLN 608

Query: 1760 RHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEMLKC 1581
            RHIITLLSTLGVKD+VFEKKQ EAVS+LD ILTDPLRAHEALDLMA GENMNVLKEMLKC
Sbjct: 609  RHIITLLSTLGVKDIVFEKKQCEAVSRLDTILTDPLRAHEALDLMASGENMNVLKEMLKC 668

Query: 1580 GYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQLSS 1401
            GYKPNSEPFLSMMLQTFR SKLLELRTKTRIFIPNGRSM+GCLDETRTLEYGQVF+QLSS
Sbjct: 669  GYKPNSEPFLSMMLQTFRTSKLLELRTKTRIFIPNGRSMIGCLDETRTLEYGQVFVQLSS 728

Query: 1400 AGHRRFYDNSNQYSKENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMVDCVVFPQK 1221
            AGH +FYD+SNQYS++NVILE+KV+VAKNPCLHPGD+RILKA+++PALHHM+DCVVFPQK
Sbjct: 729  AGHGQFYDDSNQYSEQNVILEEKVVVAKNPCLHPGDVRILKAVNLPALHHMMDCVVFPQK 788

Query: 1220 GKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTIEEVEEYFA 1041
            GKRPHPNECSGSDLDGD YFVCWD  LIPP+QDRPMDYTPAPT+QLDHKVTIEEVEEYF 
Sbjct: 789  GKRPHPNECSGSDLDGDTYFVCWDPDLIPPRQDRPMDYTPAPTMQLDHKVTIEEVEEYFT 848

Query: 1040 DYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAEIPPHLRVK 861
            DYIVNNSLGIIANAHT FAD+E LKARSEPCLELAELHSIAVDFPKTG PAEIP HLRVK
Sbjct: 849  DYIVNNSLGIIANAHTVFADREPLKARSEPCLELAELHSIAVDFPKTGVPAEIPSHLRVK 908

Query: 860  EFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHDMEIDGFED 681
            EFPDF+EKSDKP Y+SQRVIGKLFREVK KAP TSS+KSFTKQVARKSYD DME+DGFED
Sbjct: 909  EFPDFMEKSDKPMYDSQRVIGKLFREVKGKAPLTSSIKSFTKQVARKSYDSDMEVDGFED 968

Query: 680  YVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVGMAVRSLR 501
            Y+ EAFDYKSEYDYKLGNLMDYYGI+TEAEILSGGIMKMSRSFDRR DAEAVG A+ SLR
Sbjct: 969  YIAEAFDYKSEYDYKLGNLMDYYGIETEAEILSGGIMKMSRSFDRRNDAEAVGRAMTSLR 1028

Query: 500  KEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNR 372
            KEA+TWFN NGDH  DA AKASAWYHVTYHP++WGCYN+GLNR
Sbjct: 1029 KEAKTWFNTNGDHFGDACAKASAWYHVTYHPKYWGCYNKGLNR 1071


>emb|CDP05596.1| unnamed protein product [Coffea canephora]
          Length = 1112

 Score = 1751 bits (4536), Expect = 0.0
 Identities = 856/1003 (85%), Positives = 923/1003 (92%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            L YGSSYL+A + + DLVPR R++EH M+QIVL+FGCQVS+N FSVL NV NVSVRFGIG
Sbjct: 69   LNYGSSYLRAWEMDVDLVPRARSFEHNMEQIVLHFGCQVSKNRFSVLRNVPNVSVRFGIG 128

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRRGQAAKFLLIQLFGAPRVFEKLEESTFSY 3021
            M+KMYFILRF S +YKLEL YEN+WQIVLHRR  A KFLLIQLFGAPRVF+KLEESTFSY
Sbjct: 129  MRKMYFILRFRSCDYKLELSYENIWQIVLHRRSLAPKFLLIQLFGAPRVFKKLEESTFSY 188

Query: 3020 FKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGSP 2841
            FKETPD+QWVRTTDFTSSCIGQSSGICL+LP GI+LPNL DYF W+KESD QF LETGSP
Sbjct: 189  FKETPDDQWVRTTDFTSSCIGQSSGICLELPRGIQLPNLGDYFAWFKESDSQFFLETGSP 248

Query: 2840 YSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIRYIE 2661
            YSYNL LAPIL PP+GLYLPYGILFKVCCLVQ GCLPGPSLDANFFRLVDP+R  IRYIE
Sbjct: 249  YSYNLVLAPILQPPQGLYLPYGILFKVCCLVQTGCLPGPSLDANFFRLVDPQRIKIRYIE 308

Query: 2660 HALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCKVYF 2481
            HALENLY  KECCY+PVQWLKEQY+KYDKL QLPKSPTLTLDDGLVYVRRVQVTPCKVYF
Sbjct: 309  HALENLYMLKECCYEPVQWLKEQYDKYDKLRQLPKSPTLTLDDGLVYVRRVQVTPCKVYF 368

Query: 2480 CGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKRILS 2301
            CGPEVNVSNRVLR+FSED+DNFLRVSFIDEEWNK+F+TDLSPRIAANEN RT+IY+RILS
Sbjct: 369  CGPEVNVSNRVLRNFSEDLDNFLRVSFIDEEWNKMFSTDLSPRIAANENGRTEIYERILS 428

Query: 2300 TLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKYAA 2121
            TLKNG+VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKYAA
Sbjct: 429  TLKNGMVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKYAA 488

Query: 2120 RLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAKKCG 1941
            RLGQSFSSSTETLNVGRHEIEMI D+E+RGG+FG SKYVFSDGIGK+SAQFAR+VA KCG
Sbjct: 489  RLGQSFSSSTETLNVGRHEIEMISDIEVRGGYFGTSKYVFSDGIGKMSAQFARQVATKCG 548

Query: 1940 LTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPCFLN 1761
            L+ FTPSAFQIRYGGFKGVVAVDPT            KYES NTKLDVLAWSKYQPCFLN
Sbjct: 549  LS-FTPSAFQIRYGGFKGVVAVDPTSSKKLSLRQSMMKYESDNTKLDVLAWSKYQPCFLN 607

Query: 1760 RHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEMLKC 1581
            R +ITLLSTLGVKDVVFEKKQREAV+QLD ILTDPLRA EAL+LMAPGEN NVLKEMLKC
Sbjct: 608  RQLITLLSTLGVKDVVFEKKQREAVAQLDTILTDPLRAREALELMAPGENTNVLKEMLKC 667

Query: 1580 GYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQLSS 1401
            GYKP+SEPFLSMMLQTFRASKLL+LRTKTRIFIP+GRSM+GCLDETRTLEYGQVF+Q SS
Sbjct: 668  GYKPDSEPFLSMMLQTFRASKLLDLRTKTRIFIPDGRSMIGCLDETRTLEYGQVFVQFSS 727

Query: 1400 AGHRRFYDNSNQYSKENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMVDCVVFPQK 1221
            AG R+FYD+S  Y +   IL+  V+VAKNPCLHPGDIRILKA+D+P LHHMVDCVVFPQK
Sbjct: 728  AGCRQFYDDSISYYEHKTILKGTVVVAKNPCLHPGDIRILKAVDLPTLHHMVDCVVFPQK 787

Query: 1220 GKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTIEEVEEYFA 1041
            GKRPH NECSGSDLDGD YFVCWD  LIPP+QD PMDYTPAPT+QL+H+VTIEEVEEYF 
Sbjct: 788  GKRPHTNECSGSDLDGDIYFVCWDPDLIPPRQDEPMDYTPAPTMQLEHEVTIEEVEEYFT 847

Query: 1040 DYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAEIPPHLRVK 861
            +YIVN+SLGIIANAHT FAD+E LKARS+PCLELA L SIAVDFPKTG PAEI  HLRVK
Sbjct: 848  NYIVNDSLGIIANAHTVFADRELLKARSKPCLELARLFSIAVDFPKTGVPAEITSHLRVK 907

Query: 860  EFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHDMEIDGFED 681
            E+PDF+EKSDK TY+SQ VIGKLFREVKE AP TSS++SFT++VARKSYD DME+DGFED
Sbjct: 908  EYPDFMEKSDKTTYDSQHVIGKLFREVKEIAPHTSSIRSFTREVARKSYDIDMEVDGFED 967

Query: 680  YVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVGMAVRSLR 501
            YVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVGMAVRSLR
Sbjct: 968  YVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVGMAVRSLR 1027

Query: 500  KEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNR 372
            KEARTWFNRNG HSDDA+AKASAWY+VTYHPR+WGCYNEGLNR
Sbjct: 1028 KEARTWFNRNGGHSDDAFAKASAWYYVTYHPRYWGCYNEGLNR 1070


>emb|CDP05598.1| unnamed protein product [Coffea canephora]
          Length = 1131

 Score = 1566 bits (4055), Expect = 0.0
 Identities = 776/1006 (77%), Positives = 865/1006 (85%), Gaps = 3/1006 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            L YGSSYL+A + + D  P P  YEH M+QI LNFGC VSEN FSVLWNV NVSVRFGIG
Sbjct: 69   LCYGSSYLRASEDDKDWFPWPITYEHHMEQIDLNFGCPVSENRFSVLWNVANVSVRFGIG 128

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRRGQAAKFLLIQLFGAPRVFEKLEESTFSY 3021
            MK+MYFIL+F S +YKLEL  EN+WQIVLHR GQAA+FLLIQL GAPR+ +KLEES + Y
Sbjct: 129  MKRMYFILQFHSHDYKLELSRENIWQIVLHRGGQAAEFLLIQLSGAPRISKKLEESPYRY 188

Query: 3020 FKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGSP 2841
            FKETP +QWVRTTDFTSSCIGQSSGICLKLP GI+LPNL DYFPWYKESD QF LE G P
Sbjct: 189  FKETPYDQWVRTTDFTSSCIGQSSGICLKLPPGIQLPNLGDYFPWYKESDSQFMLENGFP 248

Query: 2840 YSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIRYIE 2661
            YS NL L PIL PP+GLY+PY ILF+VCCLVQ GCLPGPSLDANFF LVDP+R  ++YIE
Sbjct: 249  YSDNLVLVPILRPPQGLYVPYEILFQVCCLVQTGCLPGPSLDANFFGLVDPQRIDVKYIE 308

Query: 2660 HALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCKVYF 2481
            HALE L+T KECCY+PVQWLKEQY+KYDKL +LPKS T TL D LV VRRVQVTPCKVYF
Sbjct: 309  HALEKLHTLKECCYEPVQWLKEQYDKYDKLRRLPKSRTRTLADRLVDVRRVQVTPCKVYF 368

Query: 2480 CGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKRILS 2301
            CGPEV VSNRVLRHFSE IDNFL VSF DEE NK+F +DLSPR  ANEN RT+IY+RILS
Sbjct: 369  CGPEVIVSNRVLRHFSEYIDNFLIVSFTDEERNKMFPSDLSPRKGANENGRTEIYERILS 428

Query: 2300 TLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKYAA 2121
            TLKNGIVIGDK+F+FLA+SSSQL++NSVWMFASRP LTAADIR WMGDFS IRNVAK+AA
Sbjct: 429  TLKNGIVIGDKEFQFLAYSSSQLKENSVWMFASRPDLTAADIRRWMGDFSEIRNVAKHAA 488

Query: 2120 RLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAKKCG 1941
            RLGQSF SS ETLNVG +EIE IPD+++R  +    +YVFSDGIGKISAQFAR+VA K G
Sbjct: 489  RLGQSFGSSRETLNVGNNEIETIPDIKVRDAYRSTVEYVFSDGIGKISAQFARQVATKYG 548

Query: 1940 LTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPCFLN 1761
            L++ TPSAFQIRYGGFKGVVAVDPT            KYES+NTKLDVL +SKYQPCFLN
Sbjct: 549  LSS-TPSAFQIRYGGFKGVVAVDPTSSKKLSLRLSMKKYESNNTKLDVLQFSKYQPCFLN 607

Query: 1760 RHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEMLKC 1581
            R IITLLSTLGV+DVVFEKKQREAV+QLD ILTDP +AHEAL LMAPG+  NVLKEMLKC
Sbjct: 608  RQIITLLSTLGVEDVVFEKKQREAVAQLDTILTDPAKAHEALKLMAPGQISNVLKEMLKC 667

Query: 1580 GYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQLSS 1401
            GYKP+SEPFLSMMLQ FRASKLL+LRTKTRIFIPNGR MMGCLDETRTLEYGQVF+Q S 
Sbjct: 668  GYKPDSEPFLSMMLQAFRASKLLDLRTKTRIFIPNGRLMMGCLDETRTLEYGQVFVQFSG 727

Query: 1400 AGHRRFYDNSNQYSKENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMVDCVVFPQK 1221
            AG  +FYD+S  YSK N+ILE+KV VAKNPCLHPGDIRIL+A+DVP LHHMVDC+VFPQK
Sbjct: 728  AGRGQFYDDSIPYSKHNIILEEKVAVAKNPCLHPGDIRILEAVDVPELHHMVDCIVFPQK 787

Query: 1220 GKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTIEEVEEYFA 1041
            GKRPHPNECSGSDLDGD YFV WD  LIPP+QD PMDYTP   +QLDH+V IEEVEEYFA
Sbjct: 788  GKRPHPNECSGSDLDGDIYFVGWDADLIPPRQDEPMDYTPVRPMQLDHEVIIEEVEEYFA 847

Query: 1040 DYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAEIPPHLRVK 861
            DYI+N++LG I++AHTAFAD +  KARS+PCL+LA LHSIAVD+PKTG PAEIP HLRV+
Sbjct: 848  DYIMNDTLGTISHAHTAFADLQPQKARSKPCLKLAMLHSIAVDYPKTGVPAEIPSHLRVR 907

Query: 860  EFPDFLEKSDKPTYESQRVIGKLFREVKE---KAPFTSSVKSFTKQVARKSYDHDMEIDG 690
            +FPDF+EK ++ TYESQ VIGKLFREVKE   KAPFTSS++SFT++VAR+S+D DME+DG
Sbjct: 908  KFPDFMEKPERQTYESQNVIGKLFREVKEKAPKAPFTSSIESFTREVARRSFDADMEVDG 967

Query: 689  FEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVGMAVR 510
             EDYVDEA  YKSEYDYKLGNLMDYY  KTEAEILSGG+M +S+S DRR DAEAVGMAV 
Sbjct: 968  VEDYVDEALVYKSEYDYKLGNLMDYYSKKTEAEILSGGMMWVSKSLDRRNDAEAVGMAVT 1027

Query: 509  SLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNR 372
            SL KEAR+WF+RN  HSDDAYAKASAWYHVTYHP +WG  N GLNR
Sbjct: 1028 SLMKEARSWFDRNVGHSDDAYAKASAWYHVTYHPDYWGRCNAGLNR 1073


>ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Sesamum indicum]
            gi|747058682|ref|XP_011075688.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Sesamum indicum]
            gi|747058684|ref|XP_011075689.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Sesamum indicum]
          Length = 1115

 Score = 1481 bits (3833), Expect = 0.0
 Identities = 725/1011 (71%), Positives = 836/1011 (82%), Gaps = 7/1011 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LYYG+SYL+  +S+SD+V  PR Y H+M+Q+ LNFGCQ S   FSVLW V +VSV+FG G
Sbjct: 69   LYYGTSYLRVWESDSDIVHNPRTYVHEMEQVTLNFGCQTSREKFSVLWKVASVSVKFGTG 128

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVL-HRRGQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            MKKM+F+L   S EYKL+L YEN+WQIVL H  GQ AK LLIQLFGAPR+++K+ ES +S
Sbjct: 129  MKKMHFLLCHNSVEYKLQLSYENIWQIVLYHPHGQTAKLLLIQLFGAPRIYKKVSESIYS 188

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            YF ET D+QW+RTTDFT SCIGQ+SG+CL+LP G++LPN +D+F +Y +S+  F LE G+
Sbjct: 189  YFSETQDDQWIRTTDFTPSCIGQASGLCLELPYGMRLPNFQDHFVYYSKSENPFHLERGA 248

Query: 2843 PYSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIRYI 2664
            P+S+NL L PIL PPRG  LPY ILFKVC LVQ GCLPGP LDA FF+LV+P+R   +Y+
Sbjct: 249  PFSHNLDLVPILHPPRGFELPYRILFKVCSLVQTGCLPGPKLDARFFQLVNPQRINTKYV 308

Query: 2663 EHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCKVY 2484
            EHALE LY  KECCYDP  WL EQY KY    + P SP ++L DGLVYV RVQVTP KVY
Sbjct: 309  EHALEKLYYLKECCYDPTTWLMEQYEKYRTAKEQPTSPVISLGDGLVYVHRVQVTPTKVY 368

Query: 2483 FCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIA-ANENRRTKIYKRI 2307
            F GPEVNVSNRVLRH+S+ IDNFLRVSF+DEEW+K+++TDLSPR+A A+EN +TK+Y+RI
Sbjct: 369  FSGPEVNVSNRVLRHYSDYIDNFLRVSFVDEEWDKMYSTDLSPRVASADENGKTKLYERI 428

Query: 2306 LSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKY 2127
            L TL+ GI IG+K FEFLAFSSSQLRDNS+WMFA    L A  IR WMGDF  IRNVAKY
Sbjct: 429  LKTLREGIRIGNKNFEFLAFSSSQLRDNSLWMFAPTNNLNAHYIRQWMGDFRSIRNVAKY 488

Query: 2126 AARLGQSFSSSTETLNVGRHEIEMIPDVE-IRGGHFGASKYVFSDGIGKISAQFARRVAK 1950
            AARLGQSF SSTETL+VG+HEIE IPD+E +RGG    +KY+FSDGIGKISA+FARRVA 
Sbjct: 489  AARLGQSFGSSTETLSVGQHEIERIPDIEAVRGG----TKYIFSDGIGKISAEFARRVAV 544

Query: 1949 KCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPC 1770
            +CG+   TPSAFQIRYGG+KGVVAVDPT            KY+S NTKLDVLAWSKYQPC
Sbjct: 545  RCGVKNSTPSAFQIRYGGYKGVVAVDPTSSVKLSLRSSMLKYQSENTKLDVLAWSKYQPC 604

Query: 1769 FLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEM 1590
            FLNR IITLLSTLGVKD  FE+KQREAV+QLD IL DPLRA EALDLMAPGEN N+LKEM
Sbjct: 605  FLNRQIITLLSTLGVKDHAFERKQREAVAQLDDILVDPLRAQEALDLMAPGENTNILKEM 664

Query: 1589 LKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQ 1410
            LKCGYKP+ EPFLSMMLQTFRASKLL+LR K RIF+P GR MMGCLDET TLEYG+VF+Q
Sbjct: 665  LKCGYKPDGEPFLSMMLQTFRASKLLDLRLKARIFVPQGRQMMGCLDETGTLEYGEVFVQ 724

Query: 1409 LSSAGHRRFYDNS---NQYSKE-NVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMVD 1242
             S A  R+F + S   N Y  E N I++ KV+VAKNPCLHPGD+R+LKA+DV ALHHMVD
Sbjct: 725  FSGALRRQFNEESIMFNDYMSEYNYIVKGKVVVAKNPCLHPGDVRVLKAVDVEALHHMVD 784

Query: 1241 CVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTIE 1062
            CVVFP+KG RPHPNECSGSDLDGD YFVCWD  LIPP+Q  PMDY PAPT  LDH VTIE
Sbjct: 785  CVVFPKKGMRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVSPMDYDPAPTTGLDHDVTIE 844

Query: 1061 EVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAEI 882
            EVEEYF +YIVN+SLGII+NAHT FAD+E+  A SE CLELA L SIAVDFPKTG PAEI
Sbjct: 845  EVEEYFTNYIVNDSLGIISNAHTVFADKEESMALSESCLELARLFSIAVDFPKTGVPAEI 904

Query: 881  PPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHDM 702
            P HLRVKE+PDF++K DK  YES+RVIGKL+REVK+ AP T+S KSFTK+VAR+SYD DM
Sbjct: 905  PSHLRVKEYPDFMDKPDKTAYESKRVIGKLYREVKDIAPHTTSSKSFTKEVARRSYDPDM 964

Query: 701  EIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVG 522
            E+DGF+DY+DEAFDYK+EYDYKLGNLM+YYGIKTEAEILSGGIMK S++FDRRKDAEA+G
Sbjct: 965  EVDGFKDYIDEAFDYKTEYDYKLGNLMEYYGIKTEAEILSGGIMKTSKTFDRRKDAEAIG 1024

Query: 521  MAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            +AVRSLR EAR+WF + G  SDD YAKASAWYHVTYHP FWG YNEGL RD
Sbjct: 1025 VAVRSLRNEARSWF-KKGSESDDPYAKASAWYHVTYHPDFWGSYNEGLKRD 1074


>ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1452 bits (3758), Expect = 0.0
 Identities = 718/1015 (70%), Positives = 830/1015 (81%), Gaps = 11/1015 (1%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            ++YG +YLKAR+ + D++P+PRA+ H MD+I L+FGCQ+S+  F VLW   NVSV+FG G
Sbjct: 70   VWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAINVSVKFGSG 129

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVL-HRRGQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            ++K YF L   S EYKLEL YEN+WQI L H RGQ  KFLLIQL GAP+++EK       
Sbjct: 130  LRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEKDVPVLSY 189

Query: 3023 YFKETPDEQWVRTTDFTSSC-IGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETG 2847
            YFKE PD+QWVR  DFT SC IGQS  +CL+LP G +LPN R+ F +YKE+DG+F LE+G
Sbjct: 190  YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESG 249

Query: 2846 SPYSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIRY 2667
            S YS+NL L PIL PP+G  LP+ ILFK+  LVQNGCL GP+LD +FFRLVDP R  I +
Sbjct: 250  SSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISF 309

Query: 2666 IEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCKV 2487
            IEHALE LY  KECCY+PV+WL EQY  Y K P +  SP ++LD GLVYVRRVQ+TPCKV
Sbjct: 310  IEHALEKLYHLKECCYEPVRWLSEQYRTYVKKP-VAGSPAISLDTGLVYVRRVQITPCKV 368

Query: 2486 YFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKRI 2307
            YFCGPEVNVSNRVLR++ EDIDNFLRVSF+DE   K+ +T +SPR++  E RRT +Y+RI
Sbjct: 369  YFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMS-KEGRRTGVYRRI 427

Query: 2306 LSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKY 2127
            LS L+NGIVIGDKKF+FLAFSSSQLRDNS WMFASRPGLTAA+IR+WMGDFS+IRNVAKY
Sbjct: 428  LSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKY 487

Query: 2126 AARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAKK 1947
            AARLGQSFSSS ETL V + EIE IPD+EI   H G + YVFSDGIGKIS Q A RVA K
Sbjct: 488  AARLGQSFSSSKETLKVAKDEIENIPDIEI---HKGRTTYVFSDGIGKISPQLAHRVAIK 544

Query: 1946 CGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPCF 1767
            CG  + TPSAFQIRYGG+KGVVAVDPT            KYES NT LDVLAWSKYQP F
Sbjct: 545  CGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSF 604

Query: 1766 LNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEML 1587
            LNR +ITLLSTLGVKD VFEKKQR AV QLD IL DP+ A EAL+LM+PGEN NVLKEML
Sbjct: 605  LNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEML 664

Query: 1586 KCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQL 1407
             CGYKP++EPFLSMMLQTFRA+KLLELRTKTRIF+PNGRSMMGCLDETRTLEYG+VF+Q+
Sbjct: 665  MCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQI 724

Query: 1406 SSAGHRRFYDNSNQYS-----KENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMVD 1242
            S  G R+ + +S  +       +N ILE K++VAKNPCLHPGD+R+L A++VP LHHMVD
Sbjct: 725  SGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVD 784

Query: 1241 CVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTIE 1062
            CVVFPQKGKRPHPNECSGSDLDGD YFVCWDR LIPPQQ  PMDYTPAPT  LDH V IE
Sbjct: 785  CVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIE 844

Query: 1061 EVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAEI 882
            EVEEYF +YIVN+SLGIIANAHT FAD+E  KA  +PC ELA+L SIAVDFPKTG PAEI
Sbjct: 845  EVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEI 904

Query: 881  PPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHDM 702
            P +LRVKE+PDF+EK+DKPTYESQ VIGKLFREVK+ AP   +++SFT+ VAR+SYD DM
Sbjct: 905  PRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDM 964

Query: 701  EIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVG 522
            E+ GFEDYV +AF YKSEYDYKLGNLMDYYGIKTE+EILSG IM+MS+SFDRRKDAEA+G
Sbjct: 965  EVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIG 1024

Query: 521  MAVRSLRKEARTWFNRNG----DHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            +AV+SLRKEARTWFN+ G      +DD YAKASAWYHVTYHP +WGCYNEG++RD
Sbjct: 1025 LAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRD 1079


>ref|XP_009623376.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Nicotiana
            tomentosiformis] gi|697138603|ref|XP_009623378.1|
            PREDICTED: probable RNA-dependent RNA polymerase 1
            [Nicotiana tomentosiformis]
            gi|697138605|ref|XP_009623379.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nicotiana
            tomentosiformis] gi|697138607|ref|XP_009623380.1|
            PREDICTED: probable RNA-dependent RNA polymerase 1
            [Nicotiana tomentosiformis]
          Length = 1116

 Score = 1434 bits (3713), Expect = 0.0
 Identities = 708/1012 (69%), Positives = 830/1012 (82%), Gaps = 8/1012 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LYYG SYLKA +  +D+V +PR Y   MD + LNFGCQ+S+  F+VL + K+VS++FGIG
Sbjct: 69   LYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS-KDVSIKFGIG 126

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            +KK+YF L   S +YKL+L YEN+WQ+VLHR  GQ A+FLL+QLFGAPR++++LE+S +S
Sbjct: 127  LKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEDSCYS 186

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            +FKETPD+QWVRTTDFT S IG SS +CL+   G++LPN  + F +YKES  QF L+TG 
Sbjct: 187  FFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKESMNQFILQTGF 246

Query: 2843 PYSYN--LALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIR 2670
             +S++  LAL PI+  P G+ LPY ILFK+  L+Q+GC PG +L+ NFF+LVDPRRR I 
Sbjct: 247  TFSFSQKLALVPIVHLPEGVELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIA 306

Query: 2669 YIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCK 2490
             IEHALE LY  KECCYDPV+WL EQY++Y K  QLPKSP++TLDDGLVYVRRV VTPCK
Sbjct: 307  CIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPSITLDDGLVYVRRVVVTPCK 366

Query: 2489 VYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKR 2310
            VYFCGPEVNVSNRVLR++SEDI+NFLRVSF+DEEW K+ +TDL PR +     RT IY+R
Sbjct: 367  VYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGNGTRTDIYER 426

Query: 2309 ILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAK 2130
            ILSTL+NG +IGDK+FEFLAFSSSQLRDNSVWMFASRPGLTA DIRTWMGDF +IRNVAK
Sbjct: 427  ILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAK 486

Query: 2129 YAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAK 1950
            YAARLGQSF SS ETL+VGRHE+E+IPDV         + Y+FSDGIGKISA FA RVA 
Sbjct: 487  YAARLGQSFGSSRETLSVGRHEVEVIPDVVCS---LHGTNYIFSDGIGKISADFAHRVAI 543

Query: 1949 KCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPC 1770
            KCGL  +TPS+FQIRYGG+KGVVAVDP             KYES+N KLDVL WSKYQPC
Sbjct: 544  KCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPC 602

Query: 1769 FLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEM 1590
            +LNR ++TLLSTLGV D V E+KQ EAV QLDAIL D L+A EAL+LM+PGEN N+LKEM
Sbjct: 603  YLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEM 662

Query: 1589 LKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQ 1410
            L CGY P++EPFLSMMLQTFRASKLL+LRT+TRIFIPNGR+MMGCLDE+RTLEYGQVF+Q
Sbjct: 663  LNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQ 722

Query: 1409 LSSAGHRRFYDNSNQYSKE-----NVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMV 1245
             S AG R+FY+ S+ ++       + IL+  V+VAKNPCLHPGDIR+L+A+DVPALHHMV
Sbjct: 723  FSRAGRRQFYEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMV 782

Query: 1244 DCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTI 1065
            DCVVFPQKGKRPHPNECSGSDLDGD YFVCWD  LIPP+Q +PMDYTPAPT QLDH VTI
Sbjct: 783  DCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPTTQLDHDVTI 842

Query: 1064 EEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAE 885
            EEVEEYF +YIVN+SLGIIANAH  FAD+E   A S+PC +LA+L SIAVDFPKTG PAE
Sbjct: 843  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAE 902

Query: 884  IPPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHD 705
            IP  LR KE+PDF+EK DKPTY S++VIGKLF++VK K P  SS+ +FT+ VARKSYD D
Sbjct: 903  IPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSD 962

Query: 704  MEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAV 525
            M +DGFEDY+DEAF YKSEYD KLGNLMDYYGIKTEAEILSGGIMK S++FDRRKDAEA+
Sbjct: 963  MIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAI 1022

Query: 524  GMAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            G+AVR LRKEAR WF R  D  DD  AKASAWYHVTYH  +WG YNEGL RD
Sbjct: 1023 GVAVRCLRKEARAWFKRRSD-IDDMLAKASAWYHVTYHHTYWGLYNEGLKRD 1073


>ref|XP_009781107.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Nicotiana
            sylvestris] gi|698458664|ref|XP_009781108.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 [Nicotiana
            sylvestris] gi|698458668|ref|XP_009781109.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 [Nicotiana
            sylvestris]
          Length = 1116

 Score = 1429 bits (3699), Expect = 0.0
 Identities = 706/1012 (69%), Positives = 829/1012 (81%), Gaps = 8/1012 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LYYG+SYLKA +  +D+V +PR Y   MD + LNFGC +S+  F+VL + K VSV+FGIG
Sbjct: 69   LYYGTSYLKAWEMKTDIV-QPRTYVQHMDGVTLNFGCLISDKKFAVLGS-KGVSVKFGIG 126

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            +KK+YF L   S +YKL+L YEN+WQ+VLHR  GQ A+FLL+QLFGAPR++++LE S +S
Sbjct: 127  LKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEGSCYS 186

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            +FKETPD+QWVRTTDFT+S IG SS +CL+   G +LPN  + F +YKES  Q  L+TG 
Sbjct: 187  FFKETPDDQWVRTTDFTTSWIGLSSSLCLEFRNGGRLPNFSESFFYYKESVSQVILQTGF 246

Query: 2843 PYSY--NLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIR 2670
             +S+  NLAL PI+  P G+ LPY ILFK+  L+Q+GC PG +L+ NFF+LVDPRRR I 
Sbjct: 247  TFSFSQNLALVPIVHLPEGVELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIA 306

Query: 2669 YIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCK 2490
             IEHALE LY  KECCYDPV+WL EQY++Y    QLPKSP++TLDDGLVYVRRV VTPCK
Sbjct: 307  CIEHALEKLYYLKECCYDPVRWLTEQYDEYLNRRQLPKSPSITLDDGLVYVRRVLVTPCK 366

Query: 2489 VYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKR 2310
            VYFCGPEVNVSNRVLR++SEDIDNFLRVSF+DEEW K+ +TDL  R ++    RT IY+R
Sbjct: 367  VYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLTRASSGNGIRTDIYER 426

Query: 2309 ILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAK 2130
            ILSTL+NG +IGDK+FEFLAFSSSQLRDNSVWMFASRPGLTA DIRTWMGDF +IRNVAK
Sbjct: 427  ILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFQQIRNVAK 486

Query: 2129 YAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAK 1950
            YAARLGQSF SS ETL+VGRHE E+IPDV         + Y+FSDGIGKISA FARRVA 
Sbjct: 487  YAARLGQSFGSSRETLSVGRHEAEVIPDVVCS---LHGTNYIFSDGIGKISADFARRVAI 543

Query: 1949 KCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPC 1770
            KCGL  +TPS+FQIRYGG+KGVVAVDP             KYES+N KLDVL WSKYQPC
Sbjct: 544  KCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPC 602

Query: 1769 FLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEM 1590
            +LNR ++TLLSTLGVKD VFE+KQ EAV QLDAIL D L+A EAL+LM+PGEN N+LKEM
Sbjct: 603  YLNRQLVTLLSTLGVKDDVFEQKQNEAVEQLDAILHDSLKAQEALELMSPGENTNILKEM 662

Query: 1589 LKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQ 1410
            L CGY P++EPFLSMMLQTFRASKLL+LRT++RIFIPNGR+MMGCLDE+RTLEYGQVF+Q
Sbjct: 663  LNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQ 722

Query: 1409 LSSAGHRRFYDNSNQYSKE-----NVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMV 1245
             +  G R+FY+ S+ ++       N ILE  V+VAKNPCLHPGDIR+L+A+DVPALHHMV
Sbjct: 723  FTGTGRRQFYEESHPFNDSGSTNCNFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMV 782

Query: 1244 DCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTI 1065
            DCVVFPQKGKRPHPNECSGSDLDGD YFVCWD  LIPP+Q +PMDYTPAP+ QLDH VTI
Sbjct: 783  DCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSTQLDHDVTI 842

Query: 1064 EEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAE 885
            EEV+EYF +YIVN+SLGIIANAH  FAD+E   A S+PC +LA+L SIAVDFPKTG PAE
Sbjct: 843  EEVQEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAE 902

Query: 884  IPPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHD 705
            IP  LR KE+PDF+EK DKPTY S++VIGKLF++VK+K P  SS+ +FT  VARKSYD D
Sbjct: 903  IPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIATFTMDVARKSYDGD 962

Query: 704  MEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAV 525
            M ++GFEDY+DEAF YKSEYD KLGNLMDYYG+KTEAEILSGGIMK S++FDRRKDAEA+
Sbjct: 963  MIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGVKTEAEILSGGIMKASKTFDRRKDAEAI 1022

Query: 524  GMAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            G+AVRSLRKEARTWF +  D  DD  AKASAWYHVTYH  +WG YNEGL RD
Sbjct: 1023 GIAVRSLRKEARTWFKKRSD-IDDMLAKASAWYHVTYHHTYWGLYNEGLKRD 1073


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1428 bits (3697), Expect = 0.0
 Identities = 706/1013 (69%), Positives = 828/1013 (81%), Gaps = 9/1013 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LYYG SYLKA +  + +V +PR Y   MD + LNFGCQ+S+  F+VL + K VS++FGIG
Sbjct: 69   LYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS-KVVSIKFGIG 126

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            +KK+YF L + S +YKL+L YEN+WQ+VLHR  GQ A+FLL+QL GAPR++++LE+S +S
Sbjct: 127  LKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIYKRLEDSCYS 186

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            +FKETPD+QWVRTTDFT S IG SS +CL+   G++LPN  + F +YKES  Q  L+TG 
Sbjct: 187  FFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGVRLPNFSESFFYYKESANQVILQTGF 246

Query: 2843 PYSYN---LALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYI 2673
             +S++   LAL PI+  P G+ LPY ILFK+  L+Q+GC PG +L+ NFF+LVDPRRR I
Sbjct: 247  TFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNI 306

Query: 2672 RYIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPC 2493
              IEHALE LY  KECCYDPV+WL EQY++Y K  QLPKSP++TLDDGLVYVRRV VTPC
Sbjct: 307  ACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPC 366

Query: 2492 KVYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYK 2313
            KVYFCGPEVNVSNRVLR++SEDIDNFLRVSF+DEEW K+ +TDL PR +     RT IY 
Sbjct: 367  KVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGVRTDIYL 426

Query: 2312 RILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVA 2133
            RILSTL+NG VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA DIRTWMG F +IRNVA
Sbjct: 427  RILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVA 486

Query: 2132 KYAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVA 1953
            KYAARLGQSF SS ETL+VGRHE+E+IPDV         + Y+FSDGIGKISA FARRVA
Sbjct: 487  KYAARLGQSFGSSRETLSVGRHEVEVIPDVVCS---LHGTNYIFSDGIGKISADFARRVA 543

Query: 1952 KKCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQP 1773
             KCGL  +TPS FQIRYGG+KGVVAVDP             KYES+N KLDVL WSKYQP
Sbjct: 544  VKCGLQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQP 602

Query: 1772 CFLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKE 1593
            C+LNR ++TLLSTLGVKD VFE+KQ EAV QLDAIL D L+A EAL+LM+PGEN N+LKE
Sbjct: 603  CYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKE 662

Query: 1592 MLKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFI 1413
            ML CGY P++EPFLSMMLQTFRASKLL+LRT++RIFIPNGR+MMGCLDE+RTLEYGQVF+
Sbjct: 663  MLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFV 722

Query: 1412 QLSSAGHRRFYDNSNQYSKE-----NVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHM 1248
            Q +  G R+FY+ S+ ++       + ILE  V+VAKNPCLHPGDIR+L+A+DVPALHHM
Sbjct: 723  QFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHM 782

Query: 1247 VDCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVT 1068
            VDCVVFPQKGKRPHPNECSGSDLDGD YFVCWD  L+PP+Q +PMDYTPAP+ QLDH VT
Sbjct: 783  VDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVT 842

Query: 1067 IEEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPA 888
            IEEVEEYF +YIVN+SLGIIANAH  FAD+E   A S+PC +LA+L SIAVDFPKTG PA
Sbjct: 843  IEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPA 902

Query: 887  EIPPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDH 708
            EIP  LR KE+PDF+EK DKPTY S++VIGKLF++VK+K P  SS+ +FT  VARKSYD 
Sbjct: 903  EIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDG 962

Query: 707  DMEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEA 528
            DM ++GFEDY+DEAF YKSEYD KLGNLMDYYGIKTEAEILSGGIMK S++FDRRKDA+A
Sbjct: 963  DMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDADA 1022

Query: 527  VGMAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            +G+AVRSLRKEARTWF R  D  DD  AKASAWYHVTYH  +WG YNEGL RD
Sbjct: 1023 IGVAVRSLRKEARTWFKRRSD-IDDMLAKASAWYHVTYHHTYWGFYNEGLKRD 1074


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1428 bits (3697), Expect = 0.0
 Identities = 704/1012 (69%), Positives = 827/1012 (81%), Gaps = 8/1012 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LYYG SYLKA +  +D+V +PR Y   MD + LNFGCQ+S+  F+VL + K+VS++FGIG
Sbjct: 69   LYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS-KDVSIKFGIG 126

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            +KK+YF L   S +YKL+L YEN+WQ+VLHR  GQ A+FLL+QLFGAPR++++LE+S +S
Sbjct: 127  LKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEDSCYS 186

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            +FKETPD+QWVRTTDFT S IG SS +CL+   G++LPN  + F +YKES  QF L+TG 
Sbjct: 187  FFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKESMNQFILQTGF 246

Query: 2843 PYSYN--LALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIR 2670
             +S++  LAL PI+  P G+ LPY ILFK+  L+Q+GC PG +L+ NFF+LVDPRRR I 
Sbjct: 247  TFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIA 306

Query: 2669 YIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCK 2490
             IEHALE LY  KECCYDPV+WL EQY++Y K  QLPKSP +TLDDGLVYVRRV VTPCK
Sbjct: 307  CIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCK 366

Query: 2489 VYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKR 2310
            VYFCGPEVNVSNRVLR++SEDI+NFLRVSF+DEEW K+ +TDL PR +     RT IY+R
Sbjct: 367  VYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGNGTRTDIYER 426

Query: 2309 ILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAK 2130
            ILSTL+NG +IGDK+FEFLAFSSSQLRDNSVWMFASRPGLTA DIRTWMGDF +IRNVAK
Sbjct: 427  ILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAK 486

Query: 2129 YAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAK 1950
            YAARLGQSF SS ETL+VGRHE+E+IPDV         + Y+FSDGIGKISA FA RV  
Sbjct: 487  YAARLGQSFGSSRETLSVGRHEVEVIPDVACS---LHGTNYIFSDGIGKISADFAHRVTI 543

Query: 1949 KCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPC 1770
            KCGL  +TPS+FQIRYGG+KGVVAVDP             KYES+N KLDVL WSKYQPC
Sbjct: 544  KCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPC 602

Query: 1769 FLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEM 1590
            +LNR ++TLLSTLGV D V E+KQ EAV QLDAIL D L+A EAL+LM+PGEN N+LKEM
Sbjct: 603  YLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEM 662

Query: 1589 LKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQ 1410
            L CGY P++EPFLSMMLQTFRASKLL+LRT+TRIFIPNGR+MMGCLDE+RTLEYGQVF+Q
Sbjct: 663  LNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQ 722

Query: 1409 LSSAGHRRFYDNSNQYSKE-----NVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMV 1245
             S AG R+F++ S+ ++       + IL+  V+VAKNPCLHPGDIR+L+A+DVPALHHMV
Sbjct: 723  FSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMV 782

Query: 1244 DCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTI 1065
            DCVVFPQKGKRPHPNECSGSDLDGD YFVCWD  LIPP+Q + MDYTPAPT QLDH VTI
Sbjct: 783  DCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTI 842

Query: 1064 EEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAE 885
            EEVEEYF +YI+N+SLGIIANAH  FAD+E   A S+PC +LA+L SIAVDFPKTG PAE
Sbjct: 843  EEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAE 902

Query: 884  IPPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHD 705
            IP  LR KE+PDF+EK DKPTY S++VIGKLF++VK K P  SS+ +FT+ VARKSYD D
Sbjct: 903  IPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSD 962

Query: 704  MEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAV 525
            M +DGFEDY+DEAF YKSEYD KLGNLMDYYGIKTEAEILSGGIMK S++FDRRKDAEA+
Sbjct: 963  MIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAI 1022

Query: 524  GMAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            G+AVR LRKEAR WF R  D  DD  AKASAWYHVTYH  +WG YNEGL RD
Sbjct: 1023 GVAVRCLRKEARAWFKRRSD-IDDMLAKASAWYHVTYHHTYWGLYNEGLKRD 1073


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1421 bits (3678), Expect = 0.0
 Identities = 700/1023 (68%), Positives = 826/1023 (80%), Gaps = 19/1023 (1%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            L+YG SYL AR+   D VPRPR + H M+ I L+FGC++S   F+VLW   NV+V FG G
Sbjct: 72   LWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWRGVNVTVNFGFG 131

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLH-RRGQAAKFLLIQLFGAPRVFEK------- 3045
            M+K+ F+L     EY+LEL YEN+W+I LH  R Q  K+LLIQL GAPR+F+K       
Sbjct: 132  MRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDL 191

Query: 3044 -LEESTFSYFKETPDEQWVRTTDFT-SSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESD 2871
              E   F++FKE PD+QWVRTTDFT S+ IGQS+G+C++LP  ++LP+ ++ F +YKES+
Sbjct: 192  LYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESE 251

Query: 2870 GQFTLETGSPYSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVD 2691
             +F LETGS YS +L L PI+ PP G+ LPY ILFK+  LVQNGC+ GP LD+NF+RLVD
Sbjct: 252  DRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVD 311

Query: 2690 PRRR--YIRYIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYV 2517
            P R    I  IEHAL+ LY  KECCY+P +WL +QY KY      P SP ++LDDGLVYV
Sbjct: 312  PYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYV 371

Query: 2516 RRVQVTPCKVYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPR-IAAN 2340
             RVQVTP +VYFCGPE+NVSNRVLRHF  DIDNFLR+SFIDE+ +K+ +TDLSPR  +A 
Sbjct: 372  HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 431

Query: 2339 ENRRTKIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMG 2160
            +  RT+IY RILSTL+NGI+IGD+KFEFLAFSSSQLR++S WMFASR GLTAA+IR WMG
Sbjct: 432  DITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMG 491

Query: 2159 DFSRIRNVAKYAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKI 1980
            +F  IRNVAKYAARLGQSFSSS ETL+V   EIE+IPDV+I     G +KYVFSDGIGK+
Sbjct: 492  NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE---IGKTKYVFSDGIGKV 548

Query: 1979 SAQFARRVAKKCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLD 1800
            SA+FAR+VA KCGL    PSAFQIRYGG+KGVVA DPT            KYES  TKLD
Sbjct: 549  SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLD 608

Query: 1799 VLAWSKYQPCFLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAP 1620
            VLAWSKYQPCFLNR +I+LLSTLG+ D +FEKKQREAV QLDAILTDPL+A EAL+LM+P
Sbjct: 609  VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 668

Query: 1619 GENMNVLKEMLKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 1440
            GEN N+LKE+L CGYKP++EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR
Sbjct: 669  GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 728

Query: 1439 TLEYGQVFIQLSSAGHRRFYDNSNQYS----KENVILEDKVIVAKNPCLHPGDIRILKAI 1272
            TL YGQVF+Q+S AG+R+ +  S+ +S    ++  I++  V+VAKNPCLHPGD+R+LKA+
Sbjct: 729  TLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 788

Query: 1271 DVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPT 1092
            +VPALHHMVDCVVFPQKG RPHPNECSGSDLDGD YFVCWD  LIPPQQD PMDYTPA +
Sbjct: 789  NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQS 848

Query: 1091 VQLDHKVTIEEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVD 912
            +QLDH V IE+VEEYF +YIVN+SLGIIANAHT FAD+E  KARSEPCL+LAE  SIAVD
Sbjct: 849  MQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVD 908

Query: 911  FPKTGAPAEIPPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQ 732
            FPKTG PAEIPPHL VKE+PDF+EK DKPTYESQ VIGKLFR VK+ AP TS ++ FTK+
Sbjct: 909  FPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKE 968

Query: 731  VARKSYDHDMEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSF 552
            VAR+SYD DME+DGFED++D+A  +K  YDYKLGNLMDYYGIKTEAEIL+G IMKMS+SF
Sbjct: 969  VARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSF 1028

Query: 551  DRRKDAEAVGMAVRSLRKEARTWFNR--NGDHSDDAYAKASAWYHVTYHPRFWGCYNEGL 378
             +R+DAEA+GMAVR+LRKEAR WF      D  DDAYAKASAWYHVTYHP +WGCYN G+
Sbjct: 1029 TKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNHGM 1088

Query: 377  NRD 369
            NRD
Sbjct: 1089 NRD 1091


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score = 1419 bits (3672), Expect = 0.0
 Identities = 700/1011 (69%), Positives = 825/1011 (81%), Gaps = 8/1011 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LY+GSSYLKA +  +D+V + RAY  QMD I LNFGCQ+S++ F+VL + + VS++FGIG
Sbjct: 69   LYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLGSTE-VSIQFGIG 126

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            +KK +F L   S +YKL+L YEN+WQ+VLHR  GQ A+FLLIQLFGAPR++++LE S +S
Sbjct: 127  LKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYS 186

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            +FKETPD+QWVRTTDF  S IG SS +CL+   G++LPN  + F  Y E +   TL+TG 
Sbjct: 187  FFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGF 246

Query: 2843 PY--SYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIR 2670
             +  S   AL P + PP G+ +PY ILFK+  LVQ+GC+PGP+L+  FFRLVDPRRR + 
Sbjct: 247  TFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRNVA 306

Query: 2669 YIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCK 2490
             IEHALE LY  KECCYDPV+WL EQY+ Y K  Q PKSP++TLDDGLVYVRRV VTPCK
Sbjct: 307  CIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCK 366

Query: 2489 VYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKR 2310
            VYFCGPEVNVSNRVLR++SEDIDNFLRVSF+DEEW KL++TDL P+ +     RT IY+R
Sbjct: 367  VYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGSGVRTNIYER 426

Query: 2309 ILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAK 2130
            ILSTL+ G VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA DIR WMGDFS+I+NVAK
Sbjct: 427  ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAK 486

Query: 2129 YAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAK 1950
            YAARLGQSF SS ETL+V RHEIE+IPDV++ G     + YVFSDGIGKIS  FA RVA 
Sbjct: 487  YAARLGQSFGSSRETLSVLRHEIEVIPDVKVHG-----TSYVFSDGIGKISGDFAHRVAS 541

Query: 1949 KCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPC 1770
            KCGL  +TPSAFQIRYGG+KGVV VDP             KYES N KLDVL WSKYQPC
Sbjct: 542  KCGLQ-YTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPC 600

Query: 1769 FLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEM 1590
            +LNR +ITLLSTLGVKD V E+KQ+EAV QLDAIL D L+A EAL+LM+PGEN N+LK M
Sbjct: 601  YLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAM 660

Query: 1589 LKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQ 1410
            L CGYKP++EPFLSMMLQTFRASKLL+LRT++RIFIPNGR+MMGCLDE+RTLEYGQVF+Q
Sbjct: 661  LNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQ 720

Query: 1409 LSSAGHRRFYD-----NSNQYSKENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMV 1245
             + AGH  F D     N+++ +  N IL+  V+VAKNPCLHPGDIR+LKA++V ALHHMV
Sbjct: 721  FTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMV 780

Query: 1244 DCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTI 1065
            DCVVFPQKGKRPHPNECSGSDLDGD YFVCWD+ +IPP+Q +PM+Y PAP++QLDH VTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTI 840

Query: 1064 EEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAE 885
            EEVEEYF +YIVN+SLGIIANAH  FAD+E   A S+PC +LAEL SIAVDFPKTG PAE
Sbjct: 841  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 900

Query: 884  IPPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHD 705
            IP  LR KE+PDF++K DK +Y S+RVIGKLFR+VK+KAP  SS+ +FT+ VAR+SYD D
Sbjct: 901  IPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDAD 960

Query: 704  MEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAV 525
            ME+DGFEDY+DEAFDYK+EYD KLGNLMDYYGIKTEAEILSGGIMK S++FDRRKDAEA+
Sbjct: 961  MEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAI 1020

Query: 524  GMAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNR 372
             +AVR+LRKEAR WF R  D  DD   KASAWYHVTYHP +WGCYN+GL R
Sbjct: 1021 SVAVRALRKEARAWFKRRND-IDDMLPKASAWYHVTYHPTYWGCYNQGLKR 1070


>ref|XP_012847562.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Erythranthe
            guttatus] gi|848895047|ref|XP_012847563.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 [Erythranthe
            guttatus] gi|604316686|gb|EYU28878.1| hypothetical
            protein MIMGU_mgv1a000505mg [Erythranthe guttata]
          Length = 1110

 Score = 1417 bits (3669), Expect = 0.0
 Identities = 691/1009 (68%), Positives = 820/1009 (81%), Gaps = 5/1009 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LYYG+SYLKA +S+ D+V  PR + H+M+ + LNFGCQ+S + FSVLW  ++V+V+FG G
Sbjct: 69   LYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWKGESVTVKFGTG 128

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            MKKM+F LR  S EYK++L YEN+WQIVL+   GQ++K L+IQLFGAPR+++KL  S +S
Sbjct: 129  MKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPRIYKKLSGSVYS 188

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            YF  T D+QWVRTTDFT S IGQSS +CL+LP G++LPN RD F +YKES+  F LETG 
Sbjct: 189  YFMVTQDDQWVRTTDFTQSLIGQSSSLCLQLPYGMRLPNFRDNFLYYKESETPFRLETGV 248

Query: 2843 PYSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIRYI 2664
            P+S+N  L PI+ PP  + LPY +LFKVC LVQ GCLPGP LD +FF LV+P +  IRYI
Sbjct: 249  PFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPGPKLDRSFFDLVNPAKHDIRYI 308

Query: 2663 EHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCKVY 2484
            EHALE LY  KECCY+P  WLKEQY +Y    + PKSP + LDDGLVYV RVQVTP +VY
Sbjct: 309  EHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPAICLDDGLVYVHRVQVTPTRVY 368

Query: 2483 FCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAA-NENRRTKIYKRI 2307
            F GPEVNVSNRVLRH+ + IDNFLRVSF+DEEW+K+++TDLSPR+AA +EN+RTK+Y+R+
Sbjct: 369  FSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYSTDLSPRVAAGDENKRTKLYERV 428

Query: 2306 LSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKY 2127
            +S L++G+ IGD+KF+FLAFSSSQLRDNS+WMFA   GL A  IR WMGDFS IRNVAKY
Sbjct: 429  ISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDGLNADGIREWMGDFSSIRNVAKY 488

Query: 2126 AARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAKK 1947
            AARLGQSF SSTETL+V + EIE I DV+        ++Y FSDGIGKIS  FAR+VA K
Sbjct: 489  AARLGQSFGSSTETLSVSKREIEEIQDVK------NGTEYTFSDGIGKISEDFARQVAAK 542

Query: 1946 CGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPCF 1767
            CG+ + TPSAFQIRYGG+KGVVAVDP+            KY+S NTKLDVLAWSKYQPCF
Sbjct: 543  CGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSMLKYQSDNTKLDVLAWSKYQPCF 602

Query: 1766 LNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEML 1587
            LNR IITLLSTLGVKD VFEK+QREAV+QLD +L DP+RA EALDLM+PGEN ++LKEML
Sbjct: 603  LNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMRAQEALDLMSPGENTHILKEML 662

Query: 1586 KCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQL 1407
            KCGY+P+ EPFLSMMLQTFRASKLL+LR K R+FIP  R MMGCLDET  L+YGQVF++ 
Sbjct: 663  KCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKARQMMGCLDETGILKYGQVFVRY 722

Query: 1406 SSAGHRRFYDNSNQYSKENVILED---KVIVAKNPCLHPGDIRILKAIDVPALHHMVDCV 1236
            S A  R  +D+S   S  N   +    KV+VAKNPCLHPGD+R+L A+DVP L HMVDCV
Sbjct: 723  SGAVKRGLFDDSYDNSTANERFDPVRGKVVVAKNPCLHPGDVRVLTAVDVPELRHMVDCV 782

Query: 1235 VFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTIEEV 1056
            VFP+ GKRPHPNECSGSDLDGD YFVCWD  LIP +Q  PMDY PAPT +LDH VTIEEV
Sbjct: 783  VFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTKQVEPMDYNPAPTTRLDHDVTIEEV 842

Query: 1055 EEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAEIPP 876
            E+YF +YIVN+SLGIIANAHT FAD+E L A SEPCLELA L SIAVDF KTG PAEIPP
Sbjct: 843  EDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEPCLELARLFSIAVDFNKTGIPAEIPP 902

Query: 875  HLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHDMEI 696
            HLRVKE+PDF+EK DK  Y S RVIGKLFREVK+ AP TSS +SFTK+VAR+SYD DME+
Sbjct: 903  HLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIAPQTSSFRSFTKEVARRSYDPDMEV 962

Query: 695  DGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVGMA 516
            DGFED++DEAF +K+EYDYKLGNLM+YYG+KTEAE+LSGGIMKMS++FDRRKDAEA+G A
Sbjct: 963  DGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAEVLSGGIMKMSKTFDRRKDAEAIGAA 1022

Query: 515  VRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            VRSLR EAR+WF + G  +DD YAKASAWY+VTYHP ++GCYNEG+ RD
Sbjct: 1023 VRSLRNEARSWF-KKGTEADDVYAKASAWYYVTYHPDYFGCYNEGMKRD 1070


>ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus
            euphratica]
          Length = 1132

 Score = 1415 bits (3663), Expect = 0.0
 Identities = 703/1024 (68%), Positives = 823/1024 (80%), Gaps = 20/1024 (1%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            L+YG SYL AR  + D++P+PR+  H M+ + L+FG Q S+  FS +W+  NVSV FG+G
Sbjct: 70   LWYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLG 129

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHR-RGQAAKFLLIQLFGAPRVFEK------- 3045
            M+K++F L     EYKL L +EN+WQI LHR RGQ  K+LLIQL+GAPR++E+       
Sbjct: 130  MRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYEREVPSSLN 189

Query: 3044 -LEESTFSYFKETPDEQWVRTTDFTSSC-IGQSSGICLKLPCGIKLPNLRDYFPWYKESD 2871
              E+   +YF++ PDEQWVRTTDFT SC IG SS +CL+LP  ++LPN  + F +YKE++
Sbjct: 190  LFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPNFNENFFYYKENE 249

Query: 2870 GQFTLETGSPYSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVD 2691
            G F LE+GS +S N  L PI+ P  G+ LPY ILF+V  LVQNGCL G  LD  F+RLVD
Sbjct: 250  GTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVD 309

Query: 2690 PRRRYIRYIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRR 2511
            P R  +R IEHALE LY  KECCY+P +W  EQY KY      P+SP L+LD GLVYV +
Sbjct: 310  PNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPVLSLDAGLVYVYK 369

Query: 2510 VQVTPCKVYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAA-NEN 2334
            VQ+TPCKV+FCGPEVN+SNRVLR + E+IDNFLRVSF+DEE  K+ +TD+SPR ++ NE 
Sbjct: 370  VQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHSTDVSPRTSSRNEL 429

Query: 2333 RRTKIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDF 2154
            RRT IY RILSTL+NGIVIGDKKFEFLAFSSSQLR+NS WMFASR GLTAADIR WMG F
Sbjct: 430  RRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRRWMGSF 489

Query: 2153 SRIRNVAKYAARLGQSFSSSTETLNVGRHEIEMIPDVEI-RGGHFGASKYVFSDGIGKIS 1977
             +IRNVA+YAARLGQSFSSSTETL+V RHEIE+I D+E+ RGG    ++Y+FSDGIGKIS
Sbjct: 490  HQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSRGG----TRYLFSDGIGKIS 545

Query: 1976 AQFARRVAKKCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDV 1797
            A+FAR+VA KCG   FTPSAFQIRY G+KGVVAVDPT            KYES NTKLDV
Sbjct: 546  AEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYESENTKLDV 605

Query: 1796 LAWSKYQPCFLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPG 1617
            LA SKYQPCFLNR +ITLLSTLGV D  FE+KQREAV QLDAILTDPLRA EAL LM+PG
Sbjct: 606  LAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQEALVLMSPG 665

Query: 1616 ENMNVLKEMLKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 1437
            EN N+LKEML CGY+P++EPFLSMMLQTFRASKLLELRTKTRIFIPNGR MMGCLDETRT
Sbjct: 666  ENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMMGCLDETRT 725

Query: 1436 LEYGQVFIQLSSAGHRRFYDNSNQYSKEN----VILEDKVIVAKNPCLHPGDIRILKAID 1269
            LE+GQVF+Q S +  R  YD+S+ +S+       ++E  V+VAKNPCLHPGD+RILKA+D
Sbjct: 726  LEHGQVFVQFSGSRFRNLYDSSDVFSERGRGQCYLIEGSVVVAKNPCLHPGDVRILKAVD 785

Query: 1268 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTV 1089
            VPALHHMVDCVVFPQKG RPHPN+CSGSDLDGD YFVCWD  LIP QQ  PMDYTP PT+
Sbjct: 786  VPALHHMVDCVVFPQKGPRPHPNQCSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPTL 845

Query: 1088 QLDHKVTIEEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDF 909
            QLDH VTIEEVEEYF +YIVN+SLGIIANAHTAFAD+E LKA SEPCLELA   SIAVDF
Sbjct: 846  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELARKFSIAVDF 905

Query: 908  PKTGAPAEIPPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQV 729
            PKTG PAEIP +LRV+E+PDF+EK DKP+YES+ VIGKLFREVK+ AP TSS++SFT  V
Sbjct: 906  PKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDV 965

Query: 728  ARKSYDHDMEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFD 549
            AR+ YD DME+DGFEDY+D+AF YKS YDYKLGNLM+YYGIKTEAE+LSG  MKMS+SF 
Sbjct: 966  ARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFT 1025

Query: 548  RRKDAEAVGMAVRSLRKEARTWFNRNG----DHSDDAYAKASAWYHVTYHPRFWGCYNEG 381
            +++DAEA+GMAVRSLRKEAR+WFN  G      +DD  AKASAWYHVTYH  +WGCYNEG
Sbjct: 1026 KKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEG 1085

Query: 380  LNRD 369
            +NRD
Sbjct: 1086 MNRD 1089


>ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Populus
            euphratica]
          Length = 1132

 Score = 1414 bits (3660), Expect = 0.0
 Identities = 703/1024 (68%), Positives = 822/1024 (80%), Gaps = 20/1024 (1%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            L+YG SYL AR  + D++P+PR+  H M+ + L+FG Q S+  FS +W+  NVSV FG+G
Sbjct: 70   LWYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLG 129

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHR-RGQAAKFLLIQLFGAPRVFEK------- 3045
            M+K++F L     EYKL L +EN+WQI LHR RGQ  K+LLIQL+GAPR++E+       
Sbjct: 130  MRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYEREVPSSLN 189

Query: 3044 -LEESTFSYFKETPDEQWVRTTDFTSSC-IGQSSGICLKLPCGIKLPNLRDYFPWYKESD 2871
              E+   +YF++ PDEQWVRTTDFT SC IG SS +CL+LP  ++LPN  + F +YKE++
Sbjct: 190  LFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPNFNENFFYYKENE 249

Query: 2870 GQFTLETGSPYSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVD 2691
            G F LE+GS +S N  L PI+ P  G+ LPY ILF+V  LVQNGCL G  LD  F+RLVD
Sbjct: 250  GTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVD 309

Query: 2690 PRRRYIRYIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRR 2511
            P R  +R IEHALE LY  KECCY+P +W  EQY KY      P+SP L+LD GLVYV +
Sbjct: 310  PNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPVLSLDAGLVYVYK 369

Query: 2510 VQVTPCKVYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAA-NEN 2334
            VQ+TPCKV+FCGPEVN+SNRVLR + E+IDNFLRVSF+DEE  K+ +TD+SPR ++ NE 
Sbjct: 370  VQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHSTDVSPRTSSRNEL 429

Query: 2333 RRTKIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDF 2154
            RRT IY RILSTL+NGIVIGDKKFEFLAFSSSQLR+NS WMFASR GLTAADIR WMG F
Sbjct: 430  RRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRRWMGSF 489

Query: 2153 SRIRNVAKYAARLGQSFSSSTETLNVGRHEIEMIPDVEI-RGGHFGASKYVFSDGIGKIS 1977
             +IRNVA+YAARLGQSFSSSTETL+V RHEIE+I D+E+ RGG    ++Y+FSDGIGKIS
Sbjct: 490  HQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSRGG----TRYLFSDGIGKIS 545

Query: 1976 AQFARRVAKKCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDV 1797
            A+FAR+VA KCG   FTPSAFQIRY G+KGVVAVDPT            KYES NTKLDV
Sbjct: 546  AEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYESENTKLDV 605

Query: 1796 LAWSKYQPCFLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPG 1617
            LA SKYQPCFLNR +ITLLSTLGV D  FE+KQREAV QLDAILTDPLRA EAL LM+PG
Sbjct: 606  LAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQEALVLMSPG 665

Query: 1616 ENMNVLKEMLKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 1437
            EN N+LKEML CGY+P++EPFLSMMLQTFRASKLLELRTKTRIFIPNGR MMGCLDETRT
Sbjct: 666  ENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMMGCLDETRT 725

Query: 1436 LEYGQVFIQLSSAGHRRFYDNSNQYSKEN----VILEDKVIVAKNPCLHPGDIRILKAID 1269
            LE+GQVF+Q S +  R  YD+S+ +S+       ++E  V+VAKNPCLHPGD+RILKA+D
Sbjct: 726  LEHGQVFVQFSGSRFRNLYDSSDVFSERGRGQCYLIEGSVVVAKNPCLHPGDVRILKAVD 785

Query: 1268 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTV 1089
            VPALHHMVDCVVFPQKG RPHP ECSGSDLDGD YFVCWD  LIP QQ  PMDYTP PT+
Sbjct: 786  VPALHHMVDCVVFPQKGPRPHPKECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPTL 845

Query: 1088 QLDHKVTIEEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDF 909
            QLDH VTIEEVEEYF +YIVN+SLGIIANAHTAFAD+E LKA SEPCLELA   SIAVDF
Sbjct: 846  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELARKFSIAVDF 905

Query: 908  PKTGAPAEIPPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQV 729
            PKTG PAEIP +LRV+E+PDF+EK DKP+YES+ VIGKLFREVK+ AP TSS++SFT  V
Sbjct: 906  PKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDV 965

Query: 728  ARKSYDHDMEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFD 549
            AR+ YD DME+DGFEDY+D+AF YKS YDYKLGNLM+YYGIKTEAE+LSG  MKMS+SF 
Sbjct: 966  ARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFT 1025

Query: 548  RRKDAEAVGMAVRSLRKEARTWFNRNG----DHSDDAYAKASAWYHVTYHPRFWGCYNEG 381
            +++DAEA+GMAVRSLRKEAR+WFN  G      +DD  AKASAWYHVTYH  +WGCYNEG
Sbjct: 1026 KKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEG 1085

Query: 380  LNRD 369
            +NRD
Sbjct: 1086 MNRD 1089


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score = 1413 bits (3658), Expect = 0.0
 Identities = 701/1013 (69%), Positives = 825/1013 (81%), Gaps = 9/1013 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LY+GSSYLKAR+  +DLV      +H MD I LNFGCQ+S++ F+VL + + VS++FGIG
Sbjct: 69   LYFGSSYLKAREMETDLVQLWEYVDH-MDGITLNFGCQISDDKFAVLGSTE-VSIKFGIG 126

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            +KK +F L   S +YKL+L YEN+WQ+VLHR  GQ A+FLLIQLFGAPR++++LE S +S
Sbjct: 127  LKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYS 186

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            +FKETPD+QWVRTTDF  S IG SS +CL+   G+ LPN ++ F  Y E +   TL+TG 
Sbjct: 187  FFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGF 246

Query: 2843 PY--SYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIR 2670
             +  S   AL P + PP G+ +PY ILFK+  LVQ+GC+PGP+L+  FFRLVDP+RR + 
Sbjct: 247  TFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVA 306

Query: 2669 YIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCK 2490
             IE ALE LY  KECCYDPV+WL EQY+ Y K  Q PKSP++ LDDGLVYVRRV VTPCK
Sbjct: 307  CIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCK 366

Query: 2489 VYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKR 2310
            VYFCGPEVNVSNRVLR++SEDIDNFLRVSF+DEEW KL++TDL P+ +     RT IY+R
Sbjct: 367  VYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYER 426

Query: 2309 ILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAK 2130
            ILSTL+ G VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA DIRTWMGDFS+I+NVAK
Sbjct: 427  ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAK 486

Query: 2129 YAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAK 1950
            YAARLGQSF SSTETL+V RHEIE+IPDV++ G     + YVFSDGIGKISA FARRVA 
Sbjct: 487  YAARLGQSFGSSTETLSVLRHEIEVIPDVKVHG-----TSYVFSDGIGKISADFARRVAS 541

Query: 1949 KCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPC 1770
            KCGL   TPSAFQIRYGG+KGVVAVDP             KYES N KLDVL WSKYQPC
Sbjct: 542  KCGL-QHTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPC 600

Query: 1769 FLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEM 1590
            +LNR ++TLLSTLGVKD V E+KQ+EAV QLDAIL D L+A EAL+LM+PGEN N+LK M
Sbjct: 601  YLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAM 660

Query: 1589 LKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQ 1410
            L CGY P++EPFLSMMLQTFRASKLL+LRTK+RIFIPNGR MMGCLDE+RTLEYGQVF+Q
Sbjct: 661  LNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQ 720

Query: 1409 LSSAGHRRFYD-----NSNQYSKENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMV 1245
             + +GHR F +     N+++ +  N IL+  V+VAKNPCLHPGDIR+L+A+DVPALHHMV
Sbjct: 721  FTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMV 780

Query: 1244 DCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTI 1065
            DCVVFPQKGKRPHPNECSGSDLDGD YFVCWD+ +IPP+Q + M+Y PAP++QLDH VTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTI 840

Query: 1064 EEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAE 885
            EEVEEYF +YIVN+SLGIIANAH  FAD+E   A S+PC +LAEL SIAVDFPKTG PAE
Sbjct: 841  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAE 900

Query: 884  IPPHLRVKEFPDFLEK-SDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDH 708
            IPP LR KE+PDF++K  DK TY S+RVIGKL+R+VK+KAP  SS   FT+ VAR+SYD 
Sbjct: 901  IPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDA 960

Query: 707  DMEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEA 528
            D+E+DGFEDY+DEAFDYK+EYD KLGNLMDYYGIKTEAEILSGGIMK S++FDRRKDAEA
Sbjct: 961  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEA 1020

Query: 527  VGMAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            + +AVR+LRKEARTWF R  D  DD   KASAWYHVTYHP +WGCYN+GL RD
Sbjct: 1021 ISIAVRALRKEARTWFKRRND-IDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score = 1413 bits (3657), Expect = 0.0
 Identities = 700/1013 (69%), Positives = 826/1013 (81%), Gaps = 9/1013 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LY+GSSYLKA +  +D+V + RAY   MD I LNFGCQ+S++ F+VL + + VS++FGIG
Sbjct: 69   LYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVLGSTE-VSIKFGIG 126

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            +KK +F L   S +YKL+L YEN+WQ+VLHR  GQ A+FLLIQLFGAPR++++LE S +S
Sbjct: 127  LKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYS 186

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            +FKETPD+QWVRTTDF  S IG SS +CL+   G+ LPN ++ F  Y E +   TL+TG 
Sbjct: 187  FFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGF 246

Query: 2843 PY--SYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIR 2670
             +  S   AL P + PP G+ +PY ILFK+  LVQ+GC+PGP+L+ NFFRLVDP+RR + 
Sbjct: 247  TFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQRRNVA 306

Query: 2669 YIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCK 2490
             IE ALE LY  KECCYDPV+WL EQY+ Y K  Q PKSP++ LDDGLVYVRRV VTPCK
Sbjct: 307  CIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCK 366

Query: 2489 VYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKR 2310
            VYFCGPEVNVSNRVLR++SEDIDNFLRVSF+DEEW KL++TDL P+ +     RT IY R
Sbjct: 367  VYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYVR 426

Query: 2309 ILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAK 2130
            ILSTL+ G VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA DIRTWMGDFS+I+NVAK
Sbjct: 427  ILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAK 486

Query: 2129 YAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAK 1950
            YAARLGQSF SS ETL+V RHEIE+IPDV++ G     + YVFSDGIGKISA FARRVA 
Sbjct: 487  YAARLGQSFGSSKETLSVLRHEIEIIPDVKVHG-----TSYVFSDGIGKISADFARRVAS 541

Query: 1949 KCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPC 1770
            KCGL  +TPSAFQIRYGG+KGVVAVDP             KYES N KLDVL WSKYQPC
Sbjct: 542  KCGL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPC 600

Query: 1769 FLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEM 1590
            FLNR ++TLLSTLGVKD V E+KQ+EAV QLDAIL D L+A EAL+LM+PGEN N+LK M
Sbjct: 601  FLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAM 660

Query: 1589 LKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQ 1410
            L CGY P++EPFLSMMLQTFRASKLL+LRT++RIFIPNGR+MMGCLDE+RTLEYGQVF+Q
Sbjct: 661  LNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQ 720

Query: 1409 LSSAGHRRFYD-----NSNQYSKENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMV 1245
             + +GHR F +     N+++ +  N IL+  V+VAKNPCLHPGDIR+L+A+DVPALHHMV
Sbjct: 721  FTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMV 780

Query: 1244 DCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTI 1065
            DCVVFPQKGKRPHPNECSGSDLDGD YFVCWD+ +IPP+Q + M+Y PAP++QLDH VTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTI 840

Query: 1064 EEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAE 885
            EEVEEYF +YIVN+SLGIIANAH  FAD+E   A S+PC +LAEL SIAVDFPKTG PAE
Sbjct: 841  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 900

Query: 884  IPPHLRVKEFPDFLEK-SDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDH 708
            IP  LR KE+PDF++K  DK TY S+RVIGKL+R+VK+KAP  SS   FT+ VAR+SYD 
Sbjct: 901  IPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDA 960

Query: 707  DMEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEA 528
            D+E+DGFEDY+DEAFDYK+EYD KLGNLMDYYGIKTEAEILSGGIMK S++FDRRKDAEA
Sbjct: 961  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEA 1020

Query: 527  VGMAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            + +AVR+LRKEARTWF R  D  DD   KASAWYHVTYHP +WGCYN+GL RD
Sbjct: 1021 ISIAVRALRKEARTWFKRRND-IDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score = 1410 bits (3651), Expect = 0.0
 Identities = 699/1013 (69%), Positives = 827/1013 (81%), Gaps = 9/1013 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LY+GSSYLKA +  +D+V + RAY   MD I LNFGCQ+SE+ F+VL + + VS++FGIG
Sbjct: 69   LYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLGSTE-VSIKFGIG 126

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            +KK +F L   S +YKL+L YEN+WQ+VLHR  GQ A+FLLIQLFGAPR++++LE S +S
Sbjct: 127  LKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYS 186

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            +FKETPD+QWVRTTDFT S IG SS +CL+   G+ LPN ++ F  Y E +   TL+TG 
Sbjct: 187  FFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGF 246

Query: 2843 PY--SYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIR 2670
             +  S   AL P + PP G+ +PY ILFK+  LVQ+GC+PGP+L+  FFRLVDP+RR + 
Sbjct: 247  TFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVA 306

Query: 2669 YIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCK 2490
             IE ALE LY  KECCYDPV+WL EQY+ Y K  Q PKSP++TLDDGLVYVRRV VTPCK
Sbjct: 307  CIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCK 366

Query: 2489 VYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKR 2310
            VYFCGPEVNVSNRVLR++SEDIDNFLRVSF+DEEW KL++T+L P+ +     RT IY+R
Sbjct: 367  VYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYER 426

Query: 2309 ILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAK 2130
            ILSTL+ G VIGDKKFEFLAFSSSQLRDNSVWMFASR GLT  DIR+WMGDFS+I+NVAK
Sbjct: 427  ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAK 486

Query: 2129 YAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAK 1950
            YAARLGQSF SS ETL+V RHEIE+IPDV++ G     + YVFSDGIGKISA FARRVA 
Sbjct: 487  YAARLGQSFGSSRETLSVLRHEIEVIPDVKVHG-----TSYVFSDGIGKISADFARRVAS 541

Query: 1949 KCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPC 1770
            KCGL  +TPSAFQIRYGG+KGVVAVDP             KYES N KLDVL WSKYQPC
Sbjct: 542  KCGL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPC 600

Query: 1769 FLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEM 1590
            +LNR ++TLLSTLGVKD V E+KQ+EAV QLDAIL D L+A EAL+LM+PGEN N+LK M
Sbjct: 601  YLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAM 660

Query: 1589 LKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQ 1410
            L CGY P++EPFLSMMLQTFRASKLL+LRT++RIFIPNGR+MMGCLDE+RTLEYGQVF+Q
Sbjct: 661  LNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQ 720

Query: 1409 LSSAGHRRFYD-----NSNQYSKENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMV 1245
             + AGHR F +     N+++ +  N IL+  V+VAKNPCLHPGDIR+L+A+DVPALHHMV
Sbjct: 721  FTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMV 780

Query: 1244 DCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTI 1065
            DCVVFPQKGKRPHPNECSGSDLDGD YFVCWD+ +IPP+Q + M+Y PAP++QLDH VTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTI 840

Query: 1064 EEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAE 885
            EEVEEYF +YIVN+SLGIIANAH  FAD+E   A S+PC +LAEL SIAVDFPKTG PAE
Sbjct: 841  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 900

Query: 884  IPPHLRVKEFPDFLEK-SDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDH 708
            IP  LR KE+PDF++K  DK TY S+RVIGKLFR+VK+KAP  SS+  FT+ VAR+SYD 
Sbjct: 901  IPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDA 960

Query: 707  DMEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEA 528
            D+E+DGFEDY+DEAFDYK+EYD KLGNLMDYYGIKTEAEILSGGIMK S++FDRRKDAEA
Sbjct: 961  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEA 1020

Query: 527  VGMAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            + +AVR+LRKEARTWF R  D  DD   KASAWYHVTYHP +WGCYN+GL RD
Sbjct: 1021 ISVAVRALRKEARTWFKRRND-IDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1406 bits (3640), Expect = 0.0
 Identities = 695/1024 (67%), Positives = 821/1024 (80%), Gaps = 20/1024 (1%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            L+YG SYL AR  + D++P+PR++ H M+ + L+FG Q S+  FS +W+  NVSV FG+G
Sbjct: 70   LWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLG 129

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHR-RGQAAKFLLIQLFGAPRVFEK------- 3045
            M+K++F L     EYKL L +EN+WQI LHR RGQ  K+LLIQL+GAPR++E+       
Sbjct: 130  MRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSN 189

Query: 3044 -LEESTFSYFKETPDEQWVRTTDFTSSC-IGQSSGICLKLPCGIKLPNLRDYFPWYKESD 2871
              E+   +YF++ PDEQWVRTTDFT SC IG SS +CL+LP  ++LPN  + F +YKE++
Sbjct: 190  VFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENE 249

Query: 2870 GQFTLETGSPYSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVD 2691
            G F LE+G  +S N  L PI+ P  G+ LPY ILF+V  LVQNGCL G  LD  F+RLVD
Sbjct: 250  GTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVD 309

Query: 2690 PRRRYIRYIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRR 2511
            P R  +R IE+ALE LY  KECCY+P +W  EQY KY      P+SP L+LD GLVYV +
Sbjct: 310  PNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYK 369

Query: 2510 VQVTPCKVYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAA-NEN 2334
            VQ+TPCKV+FCGPEVNVSNRVLR + EDIDNFLRVSF+DEE  K+ +TD+SPR ++ NE 
Sbjct: 370  VQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNEL 429

Query: 2333 RRTKIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDF 2154
            RRT IY RILSTL+NGIVIGDKKFEFLAFSSSQLR+NS WMFASR GLTAADIR WMG F
Sbjct: 430  RRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSF 489

Query: 2153 SRIRNVAKYAARLGQSFSSSTETLNVGRHEIEMIPDVEI-RGGHFGASKYVFSDGIGKIS 1977
             +IRNVA+YAARLGQSF SSTETL+V  HEIE+IPD+E+ RGG    ++Y+FSDGIGKIS
Sbjct: 490  HKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGG----TRYLFSDGIGKIS 545

Query: 1976 AQFARRVAKKCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDV 1797
            A+FAR+VA KCG   FTPSAFQIRY G+KGVVAVDPT            KYES NTKLDV
Sbjct: 546  AEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDV 605

Query: 1796 LAWSKYQPCFLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPG 1617
            LA SKYQPCFLNR +ITLLSTLGV D  FE+KQREAV QLDA+LTDPLRA EAL+LM+PG
Sbjct: 606  LAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPG 665

Query: 1616 ENMNVLKEMLKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 1437
            EN N+LKEML CGY+P++EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT
Sbjct: 666  ENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 725

Query: 1436 LEYGQVFIQLSSAGHRRFYDNSNQYSKEN----VILEDKVIVAKNPCLHPGDIRILKAID 1269
            LE+GQVF++ S +  R  YD+S+ +S+       +++  V+VAKNPCLHPGD+RILKA+D
Sbjct: 726  LEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVD 785

Query: 1268 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTV 1089
            VPALHHMVDCVVFPQKG RPHPNECSGSDLDGD YFVCWD  LIP QQ  PMDYTP P +
Sbjct: 786  VPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPL 845

Query: 1088 QLDHKVTIEEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDF 909
            QLDH VTIEEVEEYF +YIVN+SLG+IANAHTA AD+E LKA SEPC+ELA   SIAVDF
Sbjct: 846  QLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDF 905

Query: 908  PKTGAPAEIPPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQV 729
            PKTG PAEIP +LR +E+PDF+EK DKP+YES+ VIGKLFREVK+ AP TSS++SFT  V
Sbjct: 906  PKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDV 965

Query: 728  ARKSYDHDMEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFD 549
            AR+ YD DME+DGFEDY+D+AF YKS YDYKLGNLM+YYGIKTEAE+LSG  MKMS+SF 
Sbjct: 966  ARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFT 1025

Query: 548  RRKDAEAVGMAVRSLRKEARTWFNRNG----DHSDDAYAKASAWYHVTYHPRFWGCYNEG 381
            +++DAEA+GMAVRSL+KEAR+WFN  G      +DD  AKASAWYHVTYH  +WGCYNEG
Sbjct: 1026 KKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEG 1085

Query: 380  LNRD 369
            +NRD
Sbjct: 1086 MNRD 1089


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score = 1401 bits (3627), Expect = 0.0
 Identities = 695/1007 (69%), Positives = 821/1007 (81%), Gaps = 9/1007 (0%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            LY+GSSYLKA +  +D+V    AY   MD I LNFGCQ+S++ F+VL + + VS++FGIG
Sbjct: 69   LYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLGSTE-VSIKFGIG 125

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHRR-GQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            +KK+YF L   S +YKL+L YEN+WQ+VLHR  GQ A+FLLIQLFGAPR++++LE S +S
Sbjct: 126  LKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYS 185

Query: 3023 YFKETPDEQWVRTTDFTSSCIGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETGS 2844
            +FKETPD+QWVRTTDF  S IG SS +CL+   G+ LPN ++ F  Y E +   TL+TG 
Sbjct: 186  FFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGF 245

Query: 2843 PY--SYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIR 2670
             +  S   AL P + PP G+ +PY ILFK+  LVQ+GC+PGPSL+  FFRLVDP+RR + 
Sbjct: 246  TFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVA 305

Query: 2669 YIEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCK 2490
             IE ALE LY  KECCYDPV+WL EQY+ Y K  Q PKSP++TLDDGLVYVRRV VTPCK
Sbjct: 306  CIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCK 365

Query: 2489 VYFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKR 2310
            VYFCGPEVNVSNRVLR++SEDIDNFLRVSF+DEEW KL++T+L P+ +     RT IY+R
Sbjct: 366  VYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYER 425

Query: 2309 ILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAK 2130
            ILST++ G VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA DIRTWMGDFS+I+NVAK
Sbjct: 426  ILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAK 485

Query: 2129 YAARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAK 1950
            YAARLGQSF SS ETL+V RHEIE+IPDV++ G     + YVFSDGIGKISA FARRVA 
Sbjct: 486  YAARLGQSFGSSKETLSVLRHEIEVIPDVKVHG-----TSYVFSDGIGKISADFARRVAS 540

Query: 1949 KCGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPC 1770
            KCGL  +TPSAFQIRYGG+KGVVAVDP             KYES N KLDVL WSKYQPC
Sbjct: 541  KCGL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPC 599

Query: 1769 FLNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEM 1590
            +LNR +ITLLSTLGVKD + E+KQ+EAV QLDAIL D L+A EAL+LM+PGEN N+LK M
Sbjct: 600  YLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAM 659

Query: 1589 LKCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQ 1410
            L CGY P++EPFLSMMLQTFRASKLL+LRTK+RIFIPNGR+MMGCLDE+RTLEYGQVF+Q
Sbjct: 660  LNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQ 719

Query: 1409 LSSAGHRRFYD-----NSNQYSKENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMV 1245
             + AGHR F +     N+++ +  N IL+  V+VAKNPCLHPGDIR+L+A+DVPALHHMV
Sbjct: 720  FTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMV 779

Query: 1244 DCVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTI 1065
            DCVVFPQKGKRPHPNECSGSDLDGD YFVCWD+ +IPP+Q +PM+Y PAP++QLDH VTI
Sbjct: 780  DCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTI 839

Query: 1064 EEVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAE 885
            EEVEEYF +YIVN+SLGII+NAH  FAD+E   A S+PC +LAEL SIAVDFPKTG PAE
Sbjct: 840  EEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAE 899

Query: 884  IPPHLRVKEFPDFLEK-SDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDH 708
            IP   R KE+PDF++K  DK TY S+RVIGKL+R+VK+KAP  SS   FT+ VAR+SYD 
Sbjct: 900  IPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDA 959

Query: 707  DMEIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEA 528
            D+E+DGFEDY+DEAFDYK+EYD KLGNLMDYYGIKTEAEILSGGIMK S++FDRRKDAEA
Sbjct: 960  DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEA 1019

Query: 527  VGMAVRSLRKEARTWFNRNGDHSDDAYAKASAWYHVTYHPRFWGCYN 387
            + +AVR+LRKEARTWF R  D  DD   KASAWYHVTYHP +WGCYN
Sbjct: 1020 ISIAVRALRKEARTWFKRRND-IDDMLPKASAWYHVTYHPTYWGCYN 1065


>ref|XP_002281315.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
            gi|731369199|ref|XP_010650995.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1109

 Score = 1398 bits (3619), Expect = 0.0
 Identities = 699/1015 (68%), Positives = 814/1015 (80%), Gaps = 11/1015 (1%)
 Frame = -3

Query: 3380 LYYGSSYLKARKSNSDLVPRPRAYEHQMDQIVLNFGCQVSENMFSVLWNVKNVSVRFGIG 3201
            L+YG +YLKAR+ + D++P+PR + H MD+I L+FG Q+S   F VLW   NVSV+FG G
Sbjct: 69   LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAINVSVKFGFG 128

Query: 3200 MKKMYFILRFCSREYKLELPYENLWQIVLHR-RGQAAKFLLIQLFGAPRVFEKLEESTFS 3024
            ++K YF L   S EYKLEL  EN+WQI L   RGQ  KFLLIQL  AP+++EK + S  S
Sbjct: 129  LRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEK-DVSALS 187

Query: 3023 YFKETPDEQWVRTTDFTSSC-IGQSSGICLKLPCGIKLPNLRDYFPWYKESDGQFTLETG 2847
            YFKETPD+QWVR  DFT SC IGQSS +CL+LP G +LPN  + F  YKE+D +F LE+G
Sbjct: 188  YFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESG 247

Query: 2846 SPYSYNLALAPILCPPRGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPRRRYIRY 2667
            + +S NL L PI+ PP+G  LP+ ILFK+  LVQNGCL GP+LD NFFR VDP+R  I +
Sbjct: 248  ASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRINISF 307

Query: 2666 IEHALENLYTSKECCYDPVQWLKEQYNKYDKLPQLPKSPTLTLDDGLVYVRRVQVTPCKV 2487
            IEHALE LY  +ECCY+PV+WL EQY  Y    Q+  SP ++LD GLVYVRRVQ+TPCKV
Sbjct: 308  IEHALEKLYYLEECCYEPVRWLHEQYRTYIS-KQVAGSPAISLDTGLVYVRRVQITPCKV 366

Query: 2486 YFCGPEVNVSNRVLRHFSEDIDNFLRVSFIDEEWNKLFATDLSPRIAANENRRTKIYKRI 2307
            YFCGPEVNVSNRVLR++ EDIDNFLRVSF+DE   K+ +T +SPR++ NE RRT +Y+RI
Sbjct: 367  YFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMS-NEGRRTGVYRRI 425

Query: 2306 LSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKY 2127
            LS L+NGIVIGDKKF+FLA SSSQLRDNS WMFASRPGLTAADIR+ MGDFS+IRNVAKY
Sbjct: 426  LSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKY 485

Query: 2126 AARLGQSFSSSTETLNVGRHEIEMIPDVEIRGGHFGASKYVFSDGIGKISAQFARRVAKK 1947
            AARLGQSFSSS ETL V +HEIE+IPD+E    H   + YVFSDGIGKISA+ A RVA K
Sbjct: 486  AARLGQSFSSSKETLKVAKHEIEIIPDIET---HRDGTTYVFSDGIGKISAELAHRVAIK 542

Query: 1946 CGLTTFTPSAFQIRYGGFKGVVAVDPTXXXXXXXXXXXXKYESSNTKLDVLAWSKYQPCF 1767
            CG    TPSAFQIRYGG+KGVVAVDPT            KYES NT LDVL+WSKY+PCF
Sbjct: 543  CGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCF 602

Query: 1766 LNRHIITLLSTLGVKDVVFEKKQREAVSQLDAILTDPLRAHEALDLMAPGENMNVLKEML 1587
            LNR +ITLLSTLGVKD VFEKKQREAV QLD IL DPLRA EAL+LM+PGEN N+LKEML
Sbjct: 603  LNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEML 662

Query: 1586 KCGYKPNSEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEYGQVFIQL 1407
             CGYKP++EPFLSMMLQTFRA+KLLELRTKTRIF+PNGRSMMGCLDETRTLEYG+VF+Q+
Sbjct: 663  MCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQI 722

Query: 1406 SSAGHRRFYDNSNQY-----SKENVILEDKVIVAKNPCLHPGDIRILKAIDVPALHHMVD 1242
            S  G R+ + +S  +       +N ILE KV+VAKNPCLHPGD+RIL A+DVPALHHMVD
Sbjct: 723  SGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVD 782

Query: 1241 CVVFPQKGKRPHPNECSGSDLDGDNYFVCWDRHLIPPQQDRPMDYTPAPTVQLDHKVTIE 1062
            CVVFPQKG RPHP+ECSGSDLDGD YFVCWD  LIPP+Q  PMDYTPAPT  LDH V IE
Sbjct: 783  CVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIE 842

Query: 1061 EVEEYFADYIVNNSLGIIANAHTAFADQEQLKARSEPCLELAELHSIAVDFPKTGAPAEI 882
            EVEEYF +YI N+ LGIIANAHT FAD+E  KA   PC ELA+L SIA++FPKTG PAEI
Sbjct: 843  EVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEI 902

Query: 881  PPHLRVKEFPDFLEKSDKPTYESQRVIGKLFREVKEKAPFTSSVKSFTKQVARKSYDHDM 702
            P HL VKE+PDF+EK++KPTYESQ VIGKLFREVK+ AP    V+SFT+ VA +SYD DM
Sbjct: 903  PFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADM 962

Query: 701  EIDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVG 522
            E+DGFEDYV +AF YKS+YD+KLG+LMD  GI+TE+EILSG IMKMS+SFD+RKDAEA+ 
Sbjct: 963  EVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEAIA 1022

Query: 521  MAVRSLRKEARTWFNRNGD----HSDDAYAKASAWYHVTYHPRFWGCYNEGLNRD 369
            +AVRSLRKEARTWFN+ G      +DD YA ASAWYHVTYHP +WGCYNEG+  D
Sbjct: 1023 LAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHD 1077