BLASTX nr result

ID: Forsythia22_contig00062833 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00062833
         (235 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...    65   1e-08
gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam...    59   1e-06
emb|CAN80993.1| hypothetical protein VITISV_022128 [Vitis vinifera]    57   6e-06
emb|CAN72704.1| hypothetical protein VITISV_016225 [Vitis vinifera]    56   8e-06

>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Erythranthe guttatus]
          Length = 598

 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 32/52 (61%), Positives = 37/52 (71%)
 Frame = -1

Query: 232 GGKL*PRSQKCIFMGYPQGSKGYRIGLKVPIKGYKVVISRVVIFNKDDMPCL 77
           G KL PR  KCIF+GYP G KGYR+ LK    GYK++ISR VIFN+   PCL
Sbjct: 386 GDKLEPRFVKCIFLGYPDGVKGYRLWLKGDF-GYKIIISRDVIFNESGFPCL 436


>gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
           19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
           score: 12.35) [Arabidopsis thaliana]
           gi|7267184|emb|CAB77896.1| putative transposon protein
           [Arabidopsis thaliana]
          Length = 1104

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 34/76 (44%), Positives = 47/76 (61%)
 Frame = -1

Query: 229 GKL*PRSQKCIFMGYPQGSKGYRIGLKVPIKGYKVVISRVVIFNKDDMPCLIESACYDAD 50
           GKL PR  K +F+GYPQG+KGY++ L   I   K VISR V+FN+D +   ++S   D D
Sbjct: 557 GKLKPRVLKGVFLGYPQGTKGYKVWL---IDEEKCVISRNVVFNEDSVFKDLQSGSKDED 613

Query: 49  STHYKNTQQQVELEMP 2
            T     + Q+E+E P
Sbjct: 614 ET--VTQESQIEIETP 627


>emb|CAN80993.1| hypothetical protein VITISV_022128 [Vitis vinifera]
          Length = 1017

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = -1

Query: 229 GKL*PRSQKCIFMGYPQGSKGYRIGLKVPIKGYKVVISRVVIFNKDDM 86
           GKL PRS KCIF+GYP+G KGYR+  K    G K++ISR V+FN++++
Sbjct: 176 GKLKPRSIKCIFLGYPEGVKGYRLWYK-ESPGVKIIISRDVMFNENEI 222


>emb|CAN72704.1| hypothetical protein VITISV_016225 [Vitis vinifera]
          Length = 817

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = -1

Query: 229 GKL*PRSQKCIFMGYPQGSKGYRIGLKVPIKGYKVVISRVVIFNKDDM 86
           GKL PRS KCIF+G+P+G KGYR+  K    G K++ISR V+FN+++M
Sbjct: 236 GKLEPRSIKCIFLGHPEGVKGYRLWNK-ESPGVKIIISRDVVFNENEM 282


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